0s autopkgtest [11:27:41]: starting date and time: 2024-11-13 11:27:41+0000 0s autopkgtest [11:27:41]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:27:41]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.efl49zg5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade unifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-53.secgroup --name adt-plucky-arm64-unifrac-20241113-112741-juju-7f2275-prod-proposed-migration-environment-2-d72af94a-0ff3-42df-8a4e-4ba31d3c399c --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 67s autopkgtest [11:28:48]: testbed dpkg architecture: arm64 67s autopkgtest [11:28:48]: testbed apt version: 2.9.8 67s autopkgtest [11:28:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 68s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 69s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 69s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 69s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 69s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 69s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 69s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 69s Fetched 1794 kB in 1s (2191 kB/s) 69s Reading package lists... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Calculating upgrade... 74s The following NEW packages will be installed: 74s python3.13-gdbm 74s The following packages will be upgraded: 74s libpython3-stdlib python3 python3-gdbm python3-minimal 74s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 74s Need to get 101 kB of archives. 74s After this operation, 141 kB of additional disk space will be used. 74s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 74s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 74s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 74s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 74s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 75s Fetched 101 kB in 0s (259 kB/s) 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 75s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 75s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 75s Setting up python3-minimal (3.12.7-1) ... 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 75s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 75s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 75s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 75s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 76s Selecting previously unselected package python3.13-gdbm. 76s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 76s Unpacking python3.13-gdbm (3.13.0-2) ... 76s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 76s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 76s Setting up python3.13-gdbm (3.13.0-2) ... 76s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 76s Setting up python3 (3.12.7-1) ... 76s Setting up python3-gdbm:arm64 (3.12.7-1) ... 76s Processing triggers for man-db (2.12.1-3) ... 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 79s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 80s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 80s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 81s Reading package lists... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s Calculating upgrade... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s autopkgtest [11:29:07]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 87s autopkgtest [11:29:08]: @@@@@@@@@@@@@@@@@@@@ apt-source unifrac 88s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (dsc) [2198 B] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (tar) [65.9 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (diff) [7788 B] 88s gpgv: Signature made Sun Sep 8 11:06:50 2024 UTC 88s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found 89s autopkgtest [11:29:10]: testing package unifrac version 1.3-4 89s autopkgtest [11:29:10]: build not needed 91s autopkgtest [11:29:12]: test pybuild-autopkgtest: preparing testbed 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 94s The following additional packages will be installed: 94s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 94s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 94s dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ g++-14 94s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 94s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext hdf5-helpers 94s intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3 94s libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl 94s libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl 94s libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 94s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 94s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 94s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 94s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 94s libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 94s liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev 94s libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev 94s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 94s librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0 94s libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1 94s libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf 94s pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format 94s python3-click python3-colorama python3-dateutil python3-decorator 94s python3-dev python3-h5py python3-h5py-serial python3-hdmedians 94s python3-iniconfig python3-iow python3-natsort python3-numpy 94s python3-packaging python3-pandas python3-pandas-lib python3-patsy 94s python3-pluggy python3-pytest python3-scipy python3-six python3-skbio 94s python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac 94s python3.12-dev python3.13 python3.13-dev python3.13-minimal zlib1g-dev 94s Suggested packages: 94s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 94s cpp-14-doc cython-doc dh-make flit python3-build python3-installer 94s python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 94s gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 94s libcurl4-doc libidn-dev libkrb5-dev libldap2-dev gmp-doc libgmp10-doc 94s libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc libnghttp2-doc 94s p11-kit-doc libssl-doc libstdc++-14-doc libtool-doc gfortran 94s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python-biom-format-doc 94s python-h5py-doc python-natsort-doc gfortran python-numpy-doc 94s python-pandas-doc python-patsy-doc python-scipy-doc python-skbio-doc 94s python-statsmodels-doc python3.13-venv python3.13-doc binfmt-support 94s Recommended packages: 94s libarchive-cpio-perl javascript-common libtasn1-doc libltdl-dev 94s libmail-sendmail-perl python3-matplotlib python3-bottleneck python3-numexpr 94s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 94s python3-tables python3-pil python3-joblib python3-cvxopt 94s The following NEW packages will be installed: 94s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 94s cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper 94s debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ 94s g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 94s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext hdf5-helpers 94s intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3 94s libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl 94s libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl 94s libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 94s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 94s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 94s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 94s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 94s libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 94s liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev 94s libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev 94s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 94s librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0 94s libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1 94s libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf 94s pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format 94s python3-click python3-colorama python3-dateutil python3-decorator 94s python3-dev python3-h5py python3-h5py-serial python3-hdmedians 94s python3-iniconfig python3-iow python3-natsort python3-numpy 94s python3-packaging python3-pandas python3-pandas-lib python3-patsy 94s python3-pluggy python3-pytest python3-scipy python3-six python3-skbio 94s python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac 94s python3.12-dev python3.13 python3.13-dev python3.13-minimal zlib1g-dev 94s 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 144 MB/144 MB of archives. 94s After this operation, 576 MB of additional disk space will be used. 94s Get:1 /tmp/autopkgtest.A2aieS/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [864 B] 95s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 95s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 95s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 95s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 95s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 95s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 95s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 95s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 95s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 96s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 96s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 96s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 96s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 96s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 96s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 96s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 96s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 96s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 96s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 96s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 96s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 96s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 96s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 96s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 96s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 96s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 96s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 97s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 97s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 97s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 97s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 97s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-1ubuntu1 [2355 kB] 97s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 97s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-7build1 [166 kB] 97s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 97s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 97s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 97s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 97s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 97s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 97s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 97s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 97s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 97s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 97s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 97s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-helpers arm64 1.10.10+repack-4ubuntu3 [16.2 kB] 97s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 97s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 97s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build2 [360 kB] 97s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 97s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 97s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 97s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 97s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 97s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 97s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2ubuntu7 [10.1 kB] 97s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2ubuntu7 [335 kB] 97s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 97s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.20.0-1ubuntu2.1 [431 kB] 97s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 97s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2ubuntu1 [24.0 kB] 97s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu1 [22.7 kB] 97s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.19.0-3build1 [90.6 kB] 97s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10-1 [1189 kB] 97s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.6-2ubuntu1 [1132 kB] 97s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 97s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 97s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.3.1-2ubuntu2 [3176 kB] 97s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 97s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [352 kB] 97s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.9.1-2ubuntu2 [491 kB] 97s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.2-2 [128 kB] 97s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 97s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 97s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 97s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4ubuntu3 [118 kB] 97s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4ubuntu3 [87.2 kB] 97s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 97s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4ubuntu3 [31.0 kB] 97s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4ubuntu3 [11.0 kB] 97s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 97s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 97s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 97s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 98s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 98s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 98s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-dev arm64 1.10.10+repack-4ubuntu3 [3043 kB] 98s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 98s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 98s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 98s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 98s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libtmglib3 arm64 3.12.0-3build2 [119 kB] 98s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapacke arm64 3.12.0-3build2 [423 kB] 98s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 98s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 98s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB] 98s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-dev arm64 3.12.7-1 [10.3 kB] 98s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 98s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13 arm64 3.13.0-2 [2262 kB] 98s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-dev arm64 3.13.0-2 [5386 kB] 98s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-all-dev arm64 3.12.7-1 [916 B] 98s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssu0 arm64 1.4-3build2 [147 kB] 98s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssu-dev arm64 1.4-3build2 [8294 B] 98s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 98s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 98s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 99s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 99s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] 99s Get:111 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-dev arm64 3.12.7-1 [26.7 kB] 99s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-dev arm64 3.13.0-2 [507 kB] 99s Get:113 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all-dev arm64 3.12.7-1 [914 B] 99s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 99s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB] 99s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 99s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 99s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB] 99s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-six all 1.16.0-7 [13.1 kB] 99s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-2 [80.3 kB] 99s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 99s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5 [4422 kB] 99s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 99s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 99s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 100s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 100s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmedians arm64 0.14.2-5.1build1 [116 kB] 100s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 100s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 100s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 100s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-patsy all 0.5.6-1 [181 kB] 100s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1 [1627 kB] 100s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels all 0.14.4+dfsg-1 [5010 kB] 100s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-skbio arm64 0.6.2-3 [1391 kB] 100s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iow arm64 1.0.7-1 [388 kB] 100s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 100s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 100s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unifrac arm64 1.3-4 [152 kB] 100s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-exec arm64 0.30 [25.6 kB] 101s Fetched 144 MB in 6s (25.0 MB/s) 101s Selecting previously unselected package libpython3.13-minimal:arm64. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 101s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ... 101s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 101s Selecting previously unselected package python3.13-minimal. 101s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ... 101s Unpacking python3.13-minimal (3.13.0-2) ... 101s Selecting previously unselected package m4. 101s Preparing to unpack .../002-m4_1.4.19-4build1_arm64.deb ... 101s Unpacking m4 (1.4.19-4build1) ... 101s Selecting previously unselected package autoconf. 101s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 101s Unpacking autoconf (2.72-3) ... 101s Selecting previously unselected package autotools-dev. 101s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 101s Unpacking autotools-dev (20220109.1) ... 101s Selecting previously unselected package automake. 101s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 101s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 101s Selecting previously unselected package autopoint. 101s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 101s Unpacking autopoint (0.22.5-2) ... 101s Selecting previously unselected package libisl23:arm64. 101s Preparing to unpack .../007-libisl23_0.27-1_arm64.deb ... 101s Unpacking libisl23:arm64 (0.27-1) ... 101s Selecting previously unselected package libmpc3:arm64. 101s Preparing to unpack .../008-libmpc3_1.3.1-1build2_arm64.deb ... 101s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 101s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 101s Preparing to unpack .../009-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package cpp-14. 101s Preparing to unpack .../010-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 101s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package cpp-aarch64-linux-gnu. 101s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 101s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 101s Selecting previously unselected package cpp. 102s Preparing to unpack .../012-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 102s Unpacking cpp (4:14.1.0-2ubuntu1) ... 102s Selecting previously unselected package libcc1-0:arm64. 102s Preparing to unpack .../013-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libgomp1:arm64. 102s Preparing to unpack .../014-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libitm1:arm64. 102s Preparing to unpack .../015-libitm1_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libasan8:arm64. 102s Preparing to unpack .../016-libasan8_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package liblsan0:arm64. 102s Preparing to unpack .../017-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libtsan2:arm64. 102s Preparing to unpack .../018-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libubsan1:arm64. 102s Preparing to unpack .../019-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libhwasan0:arm64. 102s Preparing to unpack .../020-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libgcc-14-dev:arm64. 102s Preparing to unpack .../021-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 102s Preparing to unpack .../022-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package gcc-14. 102s Preparing to unpack .../023-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 102s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package gcc-aarch64-linux-gnu. 103s Preparing to unpack .../024-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 103s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 103s Selecting previously unselected package gcc. 103s Preparing to unpack .../025-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 103s Unpacking gcc (4:14.1.0-2ubuntu1) ... 103s Selecting previously unselected package libstdc++-14-dev:arm64. 103s Preparing to unpack .../026-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ... 103s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package g++-14-aarch64-linux-gnu. 103s Preparing to unpack .../027-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 103s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package g++-14. 103s Preparing to unpack .../028-g++-14_14.2.0-8ubuntu1_arm64.deb ... 103s Unpacking g++-14 (14.2.0-8ubuntu1) ... 103s Selecting previously unselected package g++-aarch64-linux-gnu. 103s Preparing to unpack .../029-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 103s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 103s Selecting previously unselected package g++. 103s Preparing to unpack .../030-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 103s Unpacking g++ (4:14.1.0-2ubuntu1) ... 103s Selecting previously unselected package build-essential. 103s Preparing to unpack .../031-build-essential_12.10ubuntu1_arm64.deb ... 103s Unpacking build-essential (12.10ubuntu1) ... 103s Selecting previously unselected package cython3. 103s Preparing to unpack .../032-cython3_3.0.11+dfsg-1ubuntu1_arm64.deb ... 103s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 103s Selecting previously unselected package libdebhelper-perl. 103s Preparing to unpack .../033-libdebhelper-perl_13.20ubuntu1_all.deb ... 103s Unpacking libdebhelper-perl (13.20ubuntu1) ... 103s Selecting previously unselected package libtool. 103s Preparing to unpack .../034-libtool_2.4.7-7build1_all.deb ... 103s Unpacking libtool (2.4.7-7build1) ... 103s Selecting previously unselected package dh-autoreconf. 103s Preparing to unpack .../035-dh-autoreconf_20_all.deb ... 103s Unpacking dh-autoreconf (20) ... 103s Selecting previously unselected package libarchive-zip-perl. 103s Preparing to unpack .../036-libarchive-zip-perl_1.68-1_all.deb ... 103s Unpacking libarchive-zip-perl (1.68-1) ... 103s Selecting previously unselected package libfile-stripnondeterminism-perl. 103s Preparing to unpack .../037-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 103s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 103s Selecting previously unselected package dh-strip-nondeterminism. 103s Preparing to unpack .../038-dh-strip-nondeterminism_1.14.0-1_all.deb ... 103s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 103s Selecting previously unselected package debugedit. 103s Preparing to unpack .../039-debugedit_1%3a5.1-1_arm64.deb ... 103s Unpacking debugedit (1:5.1-1) ... 104s Selecting previously unselected package dwz. 104s Preparing to unpack .../040-dwz_0.15-1build6_arm64.deb ... 104s Unpacking dwz (0.15-1build6) ... 104s Selecting previously unselected package gettext. 104s Preparing to unpack .../041-gettext_0.22.5-2_arm64.deb ... 104s Unpacking gettext (0.22.5-2) ... 104s Selecting previously unselected package intltool-debian. 104s Preparing to unpack .../042-intltool-debian_0.35.0+20060710.6_all.deb ... 104s Unpacking intltool-debian (0.35.0+20060710.6) ... 104s Selecting previously unselected package po-debconf. 104s Preparing to unpack .../043-po-debconf_1.0.21+nmu1_all.deb ... 104s Unpacking po-debconf (1.0.21+nmu1) ... 104s Selecting previously unselected package debhelper. 104s Preparing to unpack .../044-debhelper_13.20ubuntu1_all.deb ... 104s Unpacking debhelper (13.20ubuntu1) ... 104s Selecting previously unselected package dh-python. 104s Preparing to unpack .../045-dh-python_6.20241024_all.deb ... 104s Unpacking dh-python (6.20241024) ... 104s Selecting previously unselected package hdf5-helpers. 104s Preparing to unpack .../046-hdf5-helpers_1.10.10+repack-4ubuntu3_arm64.deb ... 104s Unpacking hdf5-helpers (1.10.10+repack-4ubuntu3) ... 104s Selecting previously unselected package libaec0:arm64. 104s Preparing to unpack .../047-libaec0_1.1.3-1_arm64.deb ... 104s Unpacking libaec0:arm64 (1.1.3-1) ... 104s Selecting previously unselected package libblas3:arm64. 104s Preparing to unpack .../048-libblas3_3.12.0-3build2_arm64.deb ... 104s Unpacking libblas3:arm64 (3.12.0-3build2) ... 104s Selecting previously unselected package libbrotli-dev:arm64. 104s Preparing to unpack .../049-libbrotli-dev_1.1.0-2build2_arm64.deb ... 104s Unpacking libbrotli-dev:arm64 (1.1.0-2build2) ... 104s Selecting previously unselected package libidn2-dev:arm64. 104s Preparing to unpack .../050-libidn2-dev_2.3.7-2build2_arm64.deb ... 104s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 104s Selecting previously unselected package libpkgconf3:arm64. 104s Preparing to unpack .../051-libpkgconf3_1.8.1-4_arm64.deb ... 104s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 104s Selecting previously unselected package pkgconf-bin. 104s Preparing to unpack .../052-pkgconf-bin_1.8.1-4_arm64.deb ... 104s Unpacking pkgconf-bin (1.8.1-4) ... 104s Selecting previously unselected package pkgconf:arm64. 104s Preparing to unpack .../053-pkgconf_1.8.1-4_arm64.deb ... 104s Unpacking pkgconf:arm64 (1.8.1-4) ... 104s Selecting previously unselected package libnghttp2-dev:arm64. 104s Preparing to unpack .../054-libnghttp2-dev_1.64.0-1_arm64.deb ... 104s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... 104s Selecting previously unselected package libpsl-dev:arm64. 104s Preparing to unpack .../055-libpsl-dev_0.21.2-1.1build1_arm64.deb ... 104s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ... 104s Selecting previously unselected package libgmpxx4ldbl:arm64. 104s Preparing to unpack .../056-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ... 104s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 104s Selecting previously unselected package libgmp-dev:arm64. 104s Preparing to unpack .../057-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ... 104s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 104s Selecting previously unselected package libevent-2.1-7t64:arm64. 104s Preparing to unpack .../058-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 104s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 104s Selecting previously unselected package libunbound8:arm64. 104s Preparing to unpack .../059-libunbound8_1.20.0-1ubuntu2.1_arm64.deb ... 104s Unpacking libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 104s Selecting previously unselected package libgnutls-dane0t64:arm64. 104s Preparing to unpack .../060-libgnutls-dane0t64_3.8.6-2ubuntu1_arm64.deb ... 104s Unpacking libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 104s Selecting previously unselected package libgnutls-openssl27t64:arm64. 104s Preparing to unpack .../061-libgnutls-openssl27t64_3.8.6-2ubuntu1_arm64.deb ... 104s Unpacking libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 104s Selecting previously unselected package libp11-kit-dev:arm64. 104s Preparing to unpack .../062-libp11-kit-dev_0.25.5-2ubuntu1_arm64.deb ... 104s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 104s Selecting previously unselected package libtasn1-6-dev:arm64. 104s Preparing to unpack .../063-libtasn1-6-dev_4.19.0-3build1_arm64.deb ... 104s Unpacking libtasn1-6-dev:arm64 (4.19.0-3build1) ... 104s Selecting previously unselected package nettle-dev:arm64. 105s Preparing to unpack .../064-nettle-dev_3.10-1_arm64.deb ... 105s Unpacking nettle-dev:arm64 (3.10-1) ... 105s Selecting previously unselected package libgnutls28-dev:arm64. 105s Preparing to unpack .../065-libgnutls28-dev_3.8.6-2ubuntu1_arm64.deb ... 105s Unpacking libgnutls28-dev:arm64 (3.8.6-2ubuntu1) ... 105s Selecting previously unselected package zlib1g-dev:arm64. 105s Preparing to unpack .../066-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 105s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 105s Selecting previously unselected package librtmp-dev:arm64. 105s Preparing to unpack .../067-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ... 105s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 105s Selecting previously unselected package libssl-dev:arm64. 105s Preparing to unpack .../068-libssl-dev_3.3.1-2ubuntu2_arm64.deb ... 105s Unpacking libssl-dev:arm64 (3.3.1-2ubuntu2) ... 105s Selecting previously unselected package libssh2-1-dev:arm64. 105s Preparing to unpack .../069-libssh2-1-dev_1.11.1-1_arm64.deb ... 105s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... 105s Selecting previously unselected package libzstd-dev:arm64. 105s Preparing to unpack .../070-libzstd-dev_1.5.6+dfsg-1_arm64.deb ... 105s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-1) ... 105s Selecting previously unselected package libcurl4-openssl-dev:arm64. 105s Preparing to unpack .../071-libcurl4-openssl-dev_8.9.1-2ubuntu2_arm64.deb ... 105s Unpacking libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 105s Selecting previously unselected package libexpat1-dev:arm64. 105s Preparing to unpack .../072-libexpat1-dev_2.6.2-2_arm64.deb ... 105s Unpacking libexpat1-dev:arm64 (2.6.2-2) ... 105s Selecting previously unselected package libgfortran5:arm64. 105s Preparing to unpack .../073-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 105s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 105s Selecting previously unselected package libsz2:arm64. 105s Preparing to unpack .../074-libsz2_1.1.3-1_arm64.deb ... 105s Unpacking libsz2:arm64 (1.1.3-1) ... 105s Selecting previously unselected package libhdf5-103-1t64:arm64. 105s Preparing to unpack .../075-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 105s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 105s Preparing to unpack .../076-libhdf5-cpp-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 105s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libhdf5-fortran-102t64:arm64. 105s Preparing to unpack .../077-libhdf5-fortran-102t64_1.10.10+repack-4ubuntu3_arm64.deb ... 105s Unpacking libhdf5-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libhdf5-hl-100t64:arm64. 105s Preparing to unpack .../078-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 105s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libhdf5-hl-fortran-100t64:arm64. 105s Preparing to unpack .../079-libhdf5-hl-fortran-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 105s Unpacking libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libhdf5-hl-cpp-100t64:arm64. 105s Preparing to unpack .../080-libhdf5-hl-cpp-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 105s Unpacking libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libjpeg-turbo8:arm64. 105s Preparing to unpack .../081-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 105s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 105s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 105s Preparing to unpack .../082-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 105s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 105s Selecting previously unselected package libjpeg8:arm64. 105s Preparing to unpack .../083-libjpeg8_8c-2ubuntu11_arm64.deb ... 105s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 105s Selecting previously unselected package libjpeg8-dev:arm64. 105s Preparing to unpack .../084-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 105s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 105s Selecting previously unselected package libjpeg-dev:arm64. 105s Preparing to unpack .../085-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 105s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 105s Selecting previously unselected package libaec-dev:arm64. 105s Preparing to unpack .../086-libaec-dev_1.1.3-1_arm64.deb ... 105s Unpacking libaec-dev:arm64 (1.1.3-1) ... 105s Selecting previously unselected package libhdf5-dev. 106s Preparing to unpack .../087-libhdf5-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 106s Unpacking libhdf5-dev (1.10.10+repack-4ubuntu3) ... 106s Selecting previously unselected package libjs-jquery. 106s Preparing to unpack .../088-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 106s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 106s Selecting previously unselected package libjs-underscore. 106s Preparing to unpack .../089-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 106s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 106s Selecting previously unselected package libjs-sphinxdoc. 106s Preparing to unpack .../090-libjs-sphinxdoc_7.4.7-4_all.deb ... 106s Unpacking libjs-sphinxdoc (7.4.7-4) ... 106s Selecting previously unselected package liblapack3:arm64. 106s Preparing to unpack .../091-liblapack3_3.12.0-3build2_arm64.deb ... 106s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 106s Selecting previously unselected package libtmglib3:arm64. 106s Preparing to unpack .../092-libtmglib3_3.12.0-3build2_arm64.deb ... 106s Unpacking libtmglib3:arm64 (3.12.0-3build2) ... 106s Selecting previously unselected package liblapacke:arm64. 106s Preparing to unpack .../093-liblapacke_3.12.0-3build2_arm64.deb ... 106s Unpacking liblapacke:arm64 (3.12.0-3build2) ... 106s Selecting previously unselected package liblbfgsb0:arm64. 106s Preparing to unpack .../094-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 106s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 106s Selecting previously unselected package liblzf1:arm64. 106s Preparing to unpack .../095-liblzf1_3.6-4_arm64.deb ... 106s Unpacking liblzf1:arm64 (3.6-4) ... 106s Selecting previously unselected package libpython3.12-dev:arm64. 106s Preparing to unpack .../096-libpython3.12-dev_3.12.7-3_arm64.deb ... 106s Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... 106s Selecting previously unselected package libpython3-dev:arm64. 106s Preparing to unpack .../097-libpython3-dev_3.12.7-1_arm64.deb ... 106s Unpacking libpython3-dev:arm64 (3.12.7-1) ... 106s Selecting previously unselected package libpython3.13-stdlib:arm64. 106s Preparing to unpack .../098-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 106s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 106s Selecting previously unselected package libpython3.13:arm64. 106s Preparing to unpack .../099-libpython3.13_3.13.0-2_arm64.deb ... 106s Unpacking libpython3.13:arm64 (3.13.0-2) ... 106s Selecting previously unselected package libpython3.13-dev:arm64. 106s Preparing to unpack .../100-libpython3.13-dev_3.13.0-2_arm64.deb ... 106s Unpacking libpython3.13-dev:arm64 (3.13.0-2) ... 107s Selecting previously unselected package libpython3-all-dev:arm64. 107s Preparing to unpack .../101-libpython3-all-dev_3.12.7-1_arm64.deb ... 107s Unpacking libpython3-all-dev:arm64 (3.12.7-1) ... 107s Selecting previously unselected package libssu0:arm64. 107s Preparing to unpack .../102-libssu0_1.4-3build2_arm64.deb ... 107s Unpacking libssu0:arm64 (1.4-3build2) ... 107s Selecting previously unselected package libssu-dev:arm64. 107s Preparing to unpack .../103-libssu-dev_1.4-3build2_arm64.deb ... 107s Unpacking libssu-dev:arm64 (1.4-3build2) ... 107s Selecting previously unselected package libssw0:arm64. 107s Preparing to unpack .../104-libssw0_1.1-15_arm64.deb ... 107s Unpacking libssw0:arm64 (1.1-15) ... 107s Selecting previously unselected package pybuild-plugin-autopkgtest. 107s Preparing to unpack .../105-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 107s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 107s Selecting previously unselected package python3.13. 107s Preparing to unpack .../106-python3.13_3.13.0-2_arm64.deb ... 107s Unpacking python3.13 (3.13.0-2) ... 107s Selecting previously unselected package python3-all. 107s Preparing to unpack .../107-python3-all_3.12.7-1_arm64.deb ... 107s Unpacking python3-all (3.12.7-1) ... 107s Selecting previously unselected package python3.12-dev. 107s Preparing to unpack .../108-python3.12-dev_3.12.7-3_arm64.deb ... 107s Unpacking python3.12-dev (3.12.7-3) ... 107s Selecting previously unselected package python3-dev. 107s Preparing to unpack .../109-python3-dev_3.12.7-1_arm64.deb ... 107s Unpacking python3-dev (3.12.7-1) ... 107s Selecting previously unselected package python3.13-dev. 107s Preparing to unpack .../110-python3.13-dev_3.13.0-2_arm64.deb ... 107s Unpacking python3.13-dev (3.13.0-2) ... 107s Selecting previously unselected package python3-all-dev. 107s Preparing to unpack .../111-python3-all-dev_3.12.7-1_arm64.deb ... 107s Unpacking python3-all-dev (3.12.7-1) ... 107s Selecting previously unselected package python3-numpy. 107s Preparing to unpack .../112-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 107s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 107s Selecting previously unselected package python3-h5py-serial. 107s Preparing to unpack .../113-python3-h5py-serial_3.11.0-5ubuntu1_arm64.deb ... 107s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 107s Selecting previously unselected package python3-h5py. 107s Preparing to unpack .../114-python3-h5py_3.11.0-5ubuntu1_all.deb ... 107s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 107s Selecting previously unselected package python3-colorama. 107s Preparing to unpack .../115-python3-colorama_0.4.6-4_all.deb ... 107s Unpacking python3-colorama (0.4.6-4) ... 107s Selecting previously unselected package python3-click. 107s Preparing to unpack .../116-python3-click_8.1.7-2_all.deb ... 107s Unpacking python3-click (8.1.7-2) ... 107s Selecting previously unselected package python3-six. 107s Preparing to unpack .../117-python3-six_1.16.0-7_all.deb ... 107s Unpacking python3-six (1.16.0-7) ... 107s Selecting previously unselected package python3-dateutil. 107s Preparing to unpack .../118-python3-dateutil_2.9.0-2_all.deb ... 107s Unpacking python3-dateutil (2.9.0-2) ... 107s Selecting previously unselected package python3-tz. 107s Preparing to unpack .../119-python3-tz_2024.1-2_all.deb ... 107s Unpacking python3-tz (2024.1-2) ... 107s Selecting previously unselected package python3-pandas-lib:arm64. 107s Preparing to unpack .../120-python3-pandas-lib_2.2.3+dfsg-5_arm64.deb ... 107s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5) ... 108s Selecting previously unselected package python3-pandas. 108s Preparing to unpack .../121-python3-pandas_2.2.3+dfsg-5_all.deb ... 108s Unpacking python3-pandas (2.2.3+dfsg-5) ... 108s Selecting previously unselected package python3-decorator. 108s Preparing to unpack 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python3-natsort (8.0.2-2) ... 108s Selecting previously unselected package python3-packaging. 108s Preparing to unpack .../128-python3-packaging_24.1-1_all.deb ... 108s Unpacking python3-packaging (24.1-1) ... 108s Selecting previously unselected package python3-patsy. 108s Preparing to unpack .../129-python3-patsy_0.5.6-1_all.deb ... 108s Unpacking python3-patsy (0.5.6-1) ... 108s Selecting previously unselected package python3-statsmodels-lib:arm64. 109s Preparing to unpack .../130-python3-statsmodels-lib_0.14.4+dfsg-1_arm64.deb ... 109s Unpacking python3-statsmodels-lib:arm64 (0.14.4+dfsg-1) ... 109s Selecting previously unselected package python3-statsmodels. 109s Preparing to unpack .../131-python3-statsmodels_0.14.4+dfsg-1_all.deb ... 109s Unpacking python3-statsmodels (0.14.4+dfsg-1) ... 109s Selecting previously unselected package python3-skbio. 109s Preparing to unpack .../132-python3-skbio_0.6.2-3_arm64.deb ... 109s Unpacking python3-skbio (0.6.2-3) ... 109s Selecting previously unselected package python3-iow. 109s Preparing to unpack .../133-python3-iow_1.0.7-1_arm64.deb ... 109s Unpacking python3-iow (1.0.7-1) ... 109s Selecting previously unselected package python3-pluggy. 109s Preparing to unpack .../134-python3-pluggy_1.5.0-1_all.deb ... 109s Unpacking python3-pluggy (1.5.0-1) ... 109s Selecting previously unselected package python3-pytest. 109s Preparing to unpack .../135-python3-pytest_8.3.3-1_all.deb ... 109s Unpacking python3-pytest (8.3.3-1) ... 109s Selecting previously unselected package python3-unifrac. 109s Preparing to unpack .../136-python3-unifrac_1.3-4_arm64.deb ... 109s Unpacking python3-unifrac (1.3-4) ... 109s Selecting previously unselected package dh-exec. 109s Preparing to unpack .../137-dh-exec_0.30_arm64.deb ... 109s Unpacking dh-exec (0.30) ... 109s Selecting previously unselected package autopkgtest-satdep. 109s Preparing to unpack .../138-1-autopkgtest-satdep.deb ... 109s Unpacking autopkgtest-satdep (0) ... 109s Setting up dh-python (6.20241024) ... 109s Setting up libgnutls-openssl27t64:arm64 (3.8.6-2ubuntu1) ... 109s Setting up python3-iniconfig (1.1.1-2) ... 110s Setting up libzstd-dev:arm64 (1.5.6+dfsg-1) ... 110s Setting up hdf5-helpers (1.10.10+repack-4ubuntu3) ... 110s Setting up python3-colorama (0.4.6-4) ... 110s Setting up libarchive-zip-perl (1.68-1) ... 110s Setting up libdebhelper-perl (13.20ubuntu1) ... 110s Setting up m4 (1.4.19-4build1) ... 110s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 110s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 110s Setting up python3-click (8.1.7-2) ... 110s Setting up libaec0:arm64 (1.1.3-1) ... 110s Setting up python3-tz (2024.1-2) ... 110s Setting up python3-natsort (8.0.2-2) ... 111s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ... 111s Setting up python3-six (1.16.0-7) ... 111s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 111s Setting up python3-decorator (5.1.1-5) ... 111s Setting up autotools-dev (20220109.1) ... 111s Setting up libblas3:arm64 (3.12.0-3build2) ... 111s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 111s Setting up python3-packaging (24.1-1) ... 111s Setting up libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 111s Setting up libpkgconf3:arm64 (1.8.1-4) ... 111s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 111s Setting up libexpat1-dev:arm64 (2.6.2-2) ... 111s Setting up libgnutls-dane0t64:arm64 (3.8.6-2ubuntu1) ... 111s Setting up liblzf1:arm64 (3.6-4) ... 111s Setting up libssl-dev:arm64 (3.3.1-2ubuntu2) ... 111s Setting up libmpc3:arm64 (1.3.1-1build2) ... 111s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ... 113s Setting up autopoint (0.22.5-2) ... 113s Setting up pkgconf-bin (1.8.1-4) ... 113s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 113s Setting up libidn2-dev:arm64 (2.3.7-2build2) ... 113s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 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(6.20241024) ... 147s Setting up autopkgtest-satdep (0) ... 147s Processing triggers for systemd (256.5-2ubuntu4) ... 147s Processing triggers for man-db (2.12.1-3) ... 148s Processing triggers for install-info (7.1.1-1) ... 148s Processing triggers for libc-bin (2.40-1ubuntu3) ... 156s (Reading database ... 92179 files and directories currently installed.) 156s Removing autopkgtest-satdep (0) ... 157s autopkgtest [11:30:18]: test pybuild-autopkgtest: pybuild-autopkgtest 157s autopkgtest [11:30:18]: test pybuild-autopkgtest: [----------------------- 157s pybuild-autopkgtest 157s I: pybuild base:311: cd /tmp/autopkgtest.A2aieS/autopkgtest_tmp/build; python3.13 -m pytest --pyargs unifrac 158s ============================= test session starts ============================== 158s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 158s rootdir: /tmp/autopkgtest.A2aieS/autopkgtest_tmp/build 158s plugins: typeguard-4.4.1 158s collected 0 items / 2 errors 158s 158s ==================================== ERRORS ==================================== 158s ______________________ ERROR collecting tests/test_api.py ______________________ 158s ImportError while importing test module '/usr/lib/python3/dist-packages/unifrac/tests/test_api.py'. 158s Hint: make sure your test modules/packages have valid Python names. 158s Traceback: 158s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 158s from . import multiarray 158s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 158s from . import overrides 158s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 158s from numpy.core._multiarray_umath import ( 158s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 158s 158s During handling of the above exception, another exception occurred: 158s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 158s from numpy.__config__ import show as show_config 158s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 158s from numpy.core._multiarray_umath import ( 158s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 158s raise ImportError(msg) 158s E ImportError: 158s E 158s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 158s E 158s E Importing the numpy C-extensions failed. This error can happen for 158s E many reasons, often due to issues with your setup or how NumPy was 158s E installed. 158s E 158s E We have compiled some common reasons and troubleshooting tips at: 158s E 158s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 158s E 158s E Please note and check the following: 158s E 158s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 158s E * The NumPy version is: "1.26.4" 158s E 158s E and make sure that they are the versions you expect. 158s E Please carefully study the documentation linked above for further help. 158s E 158s E Original error was: No module named 'numpy.core._multiarray_umath' 158s 158s The above exception was the direct cause of the following exception: 158s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 158s return _bootstrap._gcd_import(name[level:], package, level) 158s /usr/lib/python3/dist-packages/unifrac/__init__.py:11: in 158s from unifrac._methods import (unweighted, 158s /usr/lib/python3/dist-packages/unifrac/_methods.py:13: in 158s import numpy as np 158s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 158s raise ImportError(msg) from e 158s E ImportError: Error importing numpy: you should not try to import numpy from 158s E its source directory; please exit the numpy source tree, and relaunch 158s E your python interpreter from there. 158s ____________________ ERROR collecting tests/test_methods.py ____________________ 158s ImportError while importing test module '/usr/lib/python3/dist-packages/unifrac/tests/test_methods.py'. 158s Hint: make sure your test modules/packages have valid Python names. 158s Traceback: 158s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 158s from . import multiarray 158s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 158s from . import overrides 158s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 158s from numpy.core._multiarray_umath import ( 158s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 158s 158s During handling of the above exception, another exception occurred: 158s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 158s from numpy.__config__ import show as show_config 158s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 158s from numpy.core._multiarray_umath import ( 158s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 158s raise ImportError(msg) 158s E ImportError: 158s E 158s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 158s E 158s E Importing the numpy C-extensions failed. This error can happen for 158s E many reasons, often due to issues with your setup or how NumPy was 158s E installed. 158s E 158s E We have compiled some common reasons and troubleshooting tips at: 158s E 158s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 158s E 158s E Please note and check the following: 158s E 158s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 158s E * The NumPy version is: "1.26.4" 158s E 158s E and make sure that they are the versions you expect. 158s E Please carefully study the documentation linked above for further help. 158s E 158s E Original error was: No module named 'numpy.core._multiarray_umath' 158s 158s The above exception was the direct cause of the following exception: 158s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 158s return _bootstrap._gcd_import(name[level:], package, level) 158s /usr/lib/python3/dist-packages/unifrac/__init__.py:11: in 158s from unifrac._methods import (unweighted, 158s /usr/lib/python3/dist-packages/unifrac/_methods.py:13: in 158s import numpy as np 158s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 158s raise ImportError(msg) from e 158s E ImportError: Error importing numpy: you should not try to import numpy from 158s E its source directory; please exit the numpy source tree, and relaunch 158s E your python interpreter from there. 158s =============================== warnings summary =============================== 158s ../../../../usr/lib/python3/dist-packages/unifrac/__init__.py:9 158s /usr/lib/python3/dist-packages/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 158s import pkg_resources 158s 158s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 158s =========================== short test summary info ============================ 158s ERROR tests/test_api.py 158s ERROR tests/test_methods.py 158s !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! 158s ========================= 1 warning, 2 errors in 0.40s ========================= 158s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.A2aieS/autopkgtest_tmp/build; python3.13 -m pytest --pyargs unifrac 158s I: pybuild base:311: cd /tmp/autopkgtest.A2aieS/autopkgtest_tmp/build; python3.12 -m pytest --pyargs unifrac 160s ============================= test session starts ============================== 160s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 160s rootdir: /tmp/autopkgtest.A2aieS/autopkgtest_tmp/build 160s plugins: typeguard-4.4.1 160s collected 49 items 160s 165s tests/test_api.py ........................................ [ 81%] 165s tests/test_methods.py ......... [100%] 165s 165s =============================== warnings summary =============================== 165s ../../../../usr/lib/python3/dist-packages/unifrac/__init__.py:9 165s /usr/lib/python3/dist-packages/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 165s import pkg_resources 165s 165s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed 165s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 165s self.assertAlmostEqual(actual[0], expected) 165s 165s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed 165s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 165s self.assertAlmostEqual(actual[0], expected) 165s 165s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted 165s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 165s self.assertAlmostEqual(actual[0], expected) 165s 165s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 165s ======================== 49 passed, 4 warnings in 6.94s ======================== 166s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 166s make: *** [/tmp/fefeYtgaNs/run:4: pybuild-autopkgtest] Error 25 166s pybuild-autopkgtest: error: /tmp/fefeYtgaNs/run pybuild-autopkgtest returned exit code 2 166s autopkgtest [11:30:27]: test pybuild-autopkgtest: -----------------------] 167s autopkgtest [11:30:28]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 167s pybuild-autopkgtest FAIL non-zero exit status 25 167s autopkgtest [11:30:28]: @@@@@@@@@@@@@@@@@@@@ summary 167s pybuild-autopkgtest FAIL non-zero exit status 25 181s virt: nova [W] Skipping flock in bos03-arm64 181s virt: Creating nova instance adt-plucky-arm64-unifrac-20241113-112741-juju-7f2275-prod-proposed-migration-environment-2-d72af94a-0ff3-42df-8a4e-4ba31d3c399c from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...