0s autopkgtest [15:27:19]: starting date and time: 2025-03-15 15:27:19+0000
  0s autopkgtest [15:27:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:27:19]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3rxxfzzw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade uc-echo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-5.secgroup --name adt-plucky-arm64-uc-echo-20250315-152719-juju-7f2275-prod-proposed-migration-environment-15-9507d026-65cf-4ec0-b609-7576631ebaec --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
162s autopkgtest [15:30:01]: testbed dpkg architecture: arm64
162s autopkgtest [15:30:01]: testbed apt version: 2.9.33
163s autopkgtest [15:30:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup
163s autopkgtest [15:30:02]: testbed release detected to be: None
164s autopkgtest [15:30:03]: updating testbed package index (apt update)
164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
165s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
165s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
165s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
165s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
165s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
165s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
165s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
165s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
165s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
165s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
165s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
165s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
165s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
166s Fetched 1094 kB in 1s (808 kB/s)
167s Reading package lists...
168s + lsb_release --codename --short
168s + RELEASE=plucky
168s + cat
168s + [ plucky != trusty ]
168s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
168s Reading package lists...
168s Building dependency tree...
168s Reading state information...
169s Calculating upgrade...
169s Calculating upgrade...
170s The following packages will be upgraded:
170s   python3-jinja2 strace
170s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
170s Need to get 608 kB of archives.
170s After this operation, 11.3 kB of additional disk space will be used.
170s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
171s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
171s Fetched 608 kB in 1s (851 kB/s)
171s (Reading database ... 
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(Reading database ... 117701 files and directories currently installed.)
171s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
171s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
171s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
172s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
172s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
172s Setting up strace (6.13+ds-1ubuntu1) ...
172s Processing triggers for man-db (2.13.0-1) ...
173s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
173s + /usr/lib/apt/apt-helper analyze-pattern ?true
173s + + uname -r
173s sed s/\./\\./g
173s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
173s + apt list ?obsolete
173s + tail -n+2
173s + cut -d/ -f1
173s + grep -v ^linux-.*6\.14\.0-10-generic.*
173s + obsolete_pkgs=linux-headers-6.11.0-8-generic
173s linux-headers-6.11.0-8
173s linux-image-6.11.0-8-generic
173s linux-modules-6.11.0-8-generic
173s linux-tools-6.11.0-8-generic
173s linux-tools-6.11.0-8
173s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
173s Reading package lists...
173s Building dependency tree...
173s Reading state information...
174s Solving dependencies...
174s The following packages will be REMOVED:
174s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
174s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
174s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
174s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
175s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
175s After this operation, 267 MB disk space will be freed.
175s (Reading database ... 
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(Reading database ... 117701 files and directories currently installed.)
175s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
175s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
175s Removing libpython3.12t64:arm64 (3.12.9-1) ...
175s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
175s Removing libnsl2:arm64 (1.3.0-3build3) ...
175s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
175s Removing libunwind8:arm64 (1.6.2-3.1) ...
175s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
176s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
177s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
177s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
177s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
177s /etc/kernel/postrm.d/initramfs-tools:
177s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
178s /etc/kernel/postrm.d/zz-flash-kernel:
178s flash-kernel: Kernel 6.11.0-8-generic has been removed.
178s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
178s /etc/kernel/postrm.d/zz-update-grub:
178s Sourcing file `/etc/default/grub'
178s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
178s Generating grub configuration file ...
178s Found linux image: /boot/vmlinuz-6.14.0-10-generic
178s Found initrd image: /boot/initrd.img-6.14.0-10-generic
179s Warning: os-prober will not be executed to detect other bootable partitions.
179s Systems on them will not be added to the GRUB boot configuration.
179s Check GRUB_DISABLE_OS_PROBER documentation entry.
179s Adding boot menu entry for UEFI Firmware Settings ...
179s done
179s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
179s Processing triggers for libc-bin (2.41-1ubuntu1) ...
179s (Reading database ... 
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(Reading database ... 81650 files and directories currently installed.)
179s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
179s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
179s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
179s + grep -q trusty /etc/lsb-release
179s + [ ! -d /usr/share/doc/unattended-upgrades ]
179s + [ ! -d /usr/share/doc/lxd ]
179s + [ ! -d /usr/share/doc/lxd-client ]
179s + [ ! -d /usr/share/doc/snapd ]
179s + type iptables
179s + cat
179s + chmod 755 /etc/rc.local
179s + . /etc/rc.local
179s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
179s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
179s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
179s + uname -m
179s + [ aarch64 = ppc64le ]
179s + [ -d /run/systemd/system ]
179s + systemd-detect-virt --quiet --vm
179s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
179s + cat
179s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
179s + echo COMPRESS=lz4
179s autopkgtest [15:30:18]: upgrading testbed (apt dist-upgrade and autopurge)
180s Reading package lists...
180s Building dependency tree...
180s Reading state information...
181s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
181s Starting 2 pkgProblemResolver with broken count: 0
181s Done
182s Entering ResolveByKeep
182s 
182s Calculating upgrade...
183s The following packages will be upgraded:
183s   libc-bin libc-dev-bin libc6 libc6-dev locales
183s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
183s Need to get 9530 kB of archives.
183s After this operation, 0 B of additional disk space will be used.
183s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
184s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
184s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
185s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
185s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
187s Preconfiguring packages ...
187s Fetched 9530 kB in 4s (2317 kB/s)
187s (Reading database ... 
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187s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
187s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
187s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
187s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
188s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
188s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
188s Setting up libc6:arm64 (2.41-1ubuntu2) ...
188s (Reading database ... 
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188s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
188s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
188s Setting up libc-bin (2.41-1ubuntu2) ...
188s (Reading database ... 
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188s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
188s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
189s Setting up locales (2.41-1ubuntu2) ...
189s Generating locales (this might take a while)...
191s   en_US.UTF-8... done
191s Generation complete.
191s Setting up libc-dev-bin (2.41-1ubuntu2) ...
191s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
191s Processing triggers for man-db (2.13.0-1) ...
192s Processing triggers for systemd (257.3-1ubuntu3) ...
193s Reading package lists...
194s Building dependency tree...
194s Reading state information...
194s Starting pkgProblemResolver with broken count: 0
194s Starting 2 pkgProblemResolver with broken count: 0
194s Done
195s Solving dependencies...
195s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
195s autopkgtest [15:30:34]: rebooting testbed after setup commands that affected boot
219s autopkgtest [15:30:58]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
222s autopkgtest [15:31:01]: @@@@@@@@@@@@@@@@@@@@ apt-source uc-echo
225s Get:1 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (dsc) [2113 B]
225s Get:2 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (tar) [461 kB]
225s Get:3 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (diff) [8988 B]
225s gpgv: Signature made Wed Jun  5 12:30:13 2024 UTC
225s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
225s gpgv:                issuer "tille@debian.org"
225s gpgv: Can't check signature: No public key
225s dpkg-source: warning: cannot verify inline signature for ./uc-echo_1.12-19.dsc: no acceptable signature found
225s autopkgtest [15:31:04]: testing package uc-echo version 1.12-19
226s autopkgtest [15:31:05]: build not needed
226s autopkgtest [15:31:05]: test runtest: preparing testbed
226s Reading package lists...
227s Building dependency tree...
227s Reading state information...
227s Starting pkgProblemResolver with broken count: 0
227s Starting 2 pkgProblemResolver with broken count: 0
227s Done
228s The following NEW packages will be installed:
228s   libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-decorator python3-numpy
228s   python3-numpy-dev python3-scipy uc-echo
228s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
228s Need to get 23.8 MB of archives.
228s After this operation, 98.8 MB of additional disk space will be used.
228s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB]
228s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
229s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
229s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
229s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB]
231s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB]
231s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB]
231s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB]
236s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 uc-echo arm64 1.12-19 [74.4 kB]
237s Fetched 23.8 MB in 8s (2881 kB/s)
237s Selecting previously unselected package python3-numpy-dev:arm64.
237s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
237s Preparing to unpack .../0-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ...
237s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ...
237s Selecting previously unselected package libblas3:arm64.
237s Preparing to unpack .../1-libblas3_3.12.1-2_arm64.deb ...
237s Unpacking libblas3:arm64 (3.12.1-2) ...
237s Selecting previously unselected package libgfortran5:arm64.
237s Preparing to unpack .../2-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
237s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
237s Selecting previously unselected package liblapack3:arm64.
237s Preparing to unpack .../3-liblapack3_3.12.1-2_arm64.deb ...
237s Unpacking liblapack3:arm64 (3.12.1-2) ...
237s Selecting previously unselected package python3-numpy.
237s Preparing to unpack .../4-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ...
237s Unpacking python3-numpy (1:2.2.3+ds-5) ...
237s Selecting previously unselected package liblbfgsb0:arm64.
237s Preparing to unpack .../5-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ...
237s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
237s Selecting previously unselected package python3-decorator.
237s Preparing to unpack .../6-python3-decorator_5.1.1-5_all.deb ...
237s Unpacking python3-decorator (5.1.1-5) ...
237s Selecting previously unselected package python3-scipy.
237s Preparing to unpack .../7-python3-scipy_1.14.1-4ubuntu2_arm64.deb ...
237s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
238s Selecting previously unselected package uc-echo.
238s Preparing to unpack .../8-uc-echo_1.12-19_arm64.deb ...
238s Unpacking uc-echo (1.12-19) ...
238s Setting up python3-decorator (5.1.1-5) ...
238s Setting up libblas3:arm64 (3.12.1-2) ...
238s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
238s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ...
238s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
238s Setting up liblapack3:arm64 (3.12.1-2) ...
238s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
238s Setting up python3-numpy (1:2.2.3+ds-5) ...
240s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ...
240s Setting up python3-scipy (1.14.1-4ubuntu2) ...
244s Setting up uc-echo (1.12-19) ...
244s Processing triggers for man-db (2.13.0-1) ...
244s Processing triggers for libc-bin (2.41-1ubuntu2) ...
246s autopkgtest [15:31:25]: test runtest: [-----------------------
246s Test for sample data
269s 2025_03_15-15_31_26: Run with parameters: ['/usr/lib/uc-echo/ErrorCorrection.py', '-o', 'output/sample_data.fastq', 'sample_data.txt']
269s 
269s 2025_03_15-15_31_26: Temporary Directory: /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/
269s 
269s 2025_03_15-15_31_26: Starting...
269s 
269s 2025_03_15-15_31_26: Data preprocessing complete.
269s 
269s 2025_03_15-15_31_26: Use parameter k = 15
269s 
269s 2025_03_15-15_31_26: Overlap search range: [38, 50]
269s 
269s 2025_03_15-15_31_26: Error tolerance search range: [0.050000, 0.150000]
269s 
269s 2025_03_15-15_31_26: Total number of hash files: 1
269s 
269s 2025_03_15-15_31_26: /usr/lib/uc-echo/hashing -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -nhash 1 -ihash_st 0 -ihash_ed 1 -K 15 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0
269s 
269s b''
269s 2025_03_15-15_31_28: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/0.hash /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/t_1_0.hash
269s 
269s b''
269s 2025_03_15-15_31_28: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/0.index /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/t_1_0.index
269s 
269s b''
269s 2025_03_15-15_31_28: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/t_1_0.hash /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash
269s 
269s b''
269s 2025_03_15-15_31_28: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/t_1_0.index /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
269s 
269s b''
269s 2025_03_15-15_31_28: /usr/lib/uc-echo/NeighborJoinParam -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 196024 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
269s 
269s b''
269s 2025_03_15-15_31_32: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_1_0_0_0.list
269s 
269s b''
269s 2025_03_15-15_31_32: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_1_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list
269s 
269s b''
269s 2025_03_15-15_31_32: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_38_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_33: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_38_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_34: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_38_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_35: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_40_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_36: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_40_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_37: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_40_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_38: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_42_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_39: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_42_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_40: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_42_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_41: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_41: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_42: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_43: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_46_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_44: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_46_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_45: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_46_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_46: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_48_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_47: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_48_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
269s 
269s b''
269s 2025_03_15-15_31_48: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_48_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_49: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_50_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_49: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_50_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_50: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_50_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(38), np.float64(0.05)), (np.float64(0.18561481981238556), 9))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(38), np.float64(0.1)), (np.float64(0.08050669238864594), 10))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(38), np.float64(0.15000000000000002)), (np.float64(0.0674653484541072), 10))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(40), np.float64(0.05)), (np.float64(0.16540680314588493), 9))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(40), np.float64(0.1)), (np.float64(0.07524134994153966), 10))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(40), np.float64(0.15000000000000002)), (np.float64(0.04913554862227255), 10))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(42), np.float64(0.05)), (np.float64(0.17318357548530208), 8))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(42), np.float64(0.1)), (np.float64(0.07287133664741463), 9))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(42), np.float64(0.15000000000000002)), (np.float64(0.06951233466640981), 9))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(44), np.float64(0.05)), (np.float64(0.15190234890424495), 8))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(44), np.float64(0.1)), (np.float64(0.07362103430296754), 9))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(44), np.float64(0.15000000000000002)), (np.float64(0.041210786504705506), 9))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(46), np.float64(0.05)), (np.float64(0.1661747116608638), 7))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(46), np.float64(0.1)), (np.float64(0.07082303987206366), 8))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(46), np.float64(0.15000000000000002)), (np.float64(0.06701208244754069), 8))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(48), np.float64(0.05)), (np.float64(0.15221559427752018), 7))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(48), np.float64(0.1)), (np.float64(0.07360013388104585), 8))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(48), np.float64(0.15000000000000002)), (np.float64(0.04259444984456105), 8))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(50), np.float64(0.05)), (np.float64(0.15215983254603388), 7))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(50), np.float64(0.1)), (np.float64(0.06593337756230981), 7))
280s 
280s 2025_03_15-15_31_51: Total Variation: ((np.int64(50), np.float64(0.15000000000000002)), (np.float64(0.064772801292618), 7))
280s 
280s 2025_03_15-15_31_51: Estimated Coverage: 9
280s 
280s 2025_03_15-15_31_51: param: h=44 e=0.15000000000000002 cov=9 max_cov=24 min_cov=0
280s 
280s 2025_03_15-15_31_51: h, e, mu selection complete.
280s 
280s 2025_03_15-15_31_51: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_52: EM Iteration 0: relative error = 0.000235350798576072
280s 
280s 2025_03_15-15_31_52: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_53: EM Iteration 1: relative error = 6.577855579460539e-06
280s 
280s 2025_03_15-15_31_53: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_54: EM Iteration 2: relative error = 2.591177699282294e-07
280s 
280s 2025_03_15-15_31_54: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_55: EM Iteration 3: relative error = 2.5646124798903106e-08
280s 
280s 2025_03_15-15_31_55: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_56: EM Iteration 4: relative error = 1.1565933113109722e-09
280s 
280s 2025_03_15-15_31_56: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_57: EM Iteration 5: relative error = 1.2105262006751484e-10
280s 
280s 2025_03_15-15_31_57: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
280s 
280s b''
280s 2025_03_15-15_31_58: EM Iteration 6: relative error = 1.5789472182111667e-11
280s 
280s 2025_03_15-15_31_58: cp /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confmat_0_44_0.150000.txt /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confMatEst.txt
280s 
280s b''
280s 2025_03_15-15_31_58: EM complete.
280s 
280s 2025_03_15-15_31_58: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 24503 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
280s 
280s b''
280s 2025_03_15-15_31_59: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 1_0_0 -ihash_st 24503 -ihash_ed 49006 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_00: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 2_0_0 -ihash_st 49006 -ihash_ed 73509 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_00: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 3_0_0 -ihash_st 73509 -ihash_ed 98012 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_01: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 4_0_0 -ihash_st 98012 -ihash_ed 122515 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_02: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 5_0_0 -ihash_st 122515 -ihash_ed 147018 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_02: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 6_0_0 -ihash_st 147018 -ihash_ed 171521 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_03: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 7_0_0 -ihash_st 171521 -ihash_ed 196024 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/all.index
286s 
286s b''
286s 2025_03_15-15_32_04: /usr/lib/uc-echo/NeighborMerge -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 1_0_0_0 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_1_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_2_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_3_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_4_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_5_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_6_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_7_0_0.list
286s 
286s b''
286s 2025_03_15-15_32_04: rm /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_1_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_2_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_3_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_4_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_5_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_6_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_7_0_0.list
286s 
286s b''
286s 2025_03_15-15_32_04: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_1_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list
286s 
286s b''
286s 2025_03_15-15_32_04: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/confMatEst.txt -max_cov 24 -min_cov 0 -cov 9
286s 
286s b''
286s 2025_03_15-15_32_05: Deleting Neighbor Files...
286s 
286s 2025_03_15-15_32_05: find /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmpj9p10cf0/ -name neighbor* -delete
286s 
286s b''
286s 2025_03_15-15_32_05: Error correction complete.
286s 
286s 2025_03_15-15_32_05: Removing Temporary Directory...
286s 
286s 2025_03_15-15_32_05: Output is in file: output/sample_data.fastq
286s 
286s 2025_03_15-15_32_05: Total running time (h:m:s): 0:00:39.826249
286s 
286s 2025_03_15-15_32_05: End...
286s 
287s Run with 4 threads
302s 2025_03_15-15_32_06: Run with parameters: ['/usr/lib/uc-echo/ErrorCorrection.py', '--ncpu', '4', '-o', 'output/sample_data.fastq', 'sample_data.txt']
302s 
302s 2025_03_15-15_32_06: Temporary Directory: /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/
302s 
302s 2025_03_15-15_32_06: Starting...
302s 
302s 2025_03_15-15_32_06: Data preprocessing complete.
302s 
302s 2025_03_15-15_32_06: Use parameter k = 15
302s 
302s 2025_03_15-15_32_06: Overlap search range: [38, 50]
302s 
302s 2025_03_15-15_32_06: Error tolerance search range: [0.050000, 0.150000]
302s 
302s 2025_03_15-15_32_06: Total number of hash files: 1
302s 
302s 2025_03_15-15_32_06: /usr/lib/uc-echo/hashing -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -nhash 1 -ihash_st 0 -ihash_ed 1 -K 15 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0
302s 
302s b''
302s 2025_03_15-15_32_08: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/0.hash /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/t_1_0.hash
302s 
302s b''
302s 2025_03_15-15_32_08: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/0.index /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/t_1_0.index
302s 
302s b''
302s 2025_03_15-15_32_08: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/t_1_0.hash /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash
302s 
302s b''
302s 2025_03_15-15_32_08: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/t_1_0.index /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
302s 
302s b''
302s 2025_03_15-15_32_08: /usr/lib/uc-echo/NeighborJoinParam -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 196024 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
302s 
302s b''
302s 2025_03_15-15_32_13: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_1_0_0_0.list
302s 
302s b''
302s 2025_03_15-15_32_13: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_1_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list
302s 
302s b''
302s 2025_03_15-15_32_13: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_38_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s 2025_03_15-15_32_13: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_38_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s 2025_03_15-15_32_13: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_38_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s 2025_03_15-15_32_13: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_40_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_15: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_40_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_15: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_40_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_15: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_42_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_15: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_42_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_17: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_42_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_17: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_17: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_17: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_19: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_46_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_19: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_46_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_19: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_46_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_19: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_48_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_21: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_48_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
302s 
302s b''
302s 2025_03_15-15_32_21: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_48_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_21: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.050000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_50_0.050000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_21: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.100000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_50_0.100000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_23: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_50_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -save_stats 1
313s 
313s b''
313s b''
313s b''
313s b''
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(38), np.float64(0.05)), (np.float64(0.18561481981238556), 9))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(38), np.float64(0.1)), (np.float64(0.08050669238864594), 10))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(38), np.float64(0.15000000000000002)), (np.float64(0.0674653484541072), 10))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(40), np.float64(0.05)), (np.float64(0.16540680314588493), 9))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(40), np.float64(0.1)), (np.float64(0.07524134994153966), 10))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(40), np.float64(0.15000000000000002)), (np.float64(0.04913554862227255), 10))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(42), np.float64(0.05)), (np.float64(0.17318357548530208), 8))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(42), np.float64(0.1)), (np.float64(0.07287133664741463), 9))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(42), np.float64(0.15000000000000002)), (np.float64(0.06951233466640981), 9))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(44), np.float64(0.05)), (np.float64(0.15190234890424495), 8))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(44), np.float64(0.1)), (np.float64(0.07362103430296754), 9))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(44), np.float64(0.15000000000000002)), (np.float64(0.041210786504705506), 9))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(46), np.float64(0.05)), (np.float64(0.1661747116608638), 7))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(46), np.float64(0.1)), (np.float64(0.07082303987206366), 8))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(46), np.float64(0.15000000000000002)), (np.float64(0.06701208244754069), 8))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(48), np.float64(0.05)), (np.float64(0.15221559427752018), 7))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(48), np.float64(0.1)), (np.float64(0.07360013388104585), 8))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(48), np.float64(0.15000000000000002)), (np.float64(0.04259444984456105), 8))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(50), np.float64(0.05)), (np.float64(0.15215983254603388), 7))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(50), np.float64(0.1)), (np.float64(0.06593337756230981), 7))
313s 
313s 2025_03_15-15_32_24: Total Variation: ((np.int64(50), np.float64(0.15000000000000002)), (np.float64(0.064772801292618), 7))
313s 
313s 2025_03_15-15_32_24: Estimated Coverage: 9
313s 
313s 2025_03_15-15_32_24: param: h=44 e=0.15000000000000002 cov=9 max_cov=24 min_cov=0
313s 
313s 2025_03_15-15_32_24: h, e, mu selection complete.
313s 
313s 2025_03_15-15_32_24: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_25: EM Iteration 0: relative error = 0.000235350798576072
313s 
313s 2025_03_15-15_32_25: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_26: EM Iteration 1: relative error = 6.577855579460539e-06
313s 
313s 2025_03_15-15_32_26: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_27: EM Iteration 2: relative error = 2.591177699282294e-07
313s 
313s 2025_03_15-15_32_27: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_28: EM Iteration 3: relative error = 2.5646124798903106e-08
313s 
313s 2025_03_15-15_32_28: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_29: EM Iteration 4: relative error = 1.1565933113109722e-09
313s 
313s 2025_03_15-15_32_29: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_30: EM Iteration 5: relative error = 1.2105262006751484e-10
313s 
313s 2025_03_15-15_32_30: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
313s 
313s b''
313s 2025_03_15-15_32_31: EM Iteration 6: relative error = 1.5789472182111667e-11
313s 
313s 2025_03_15-15_32_31: cp /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confmat_0_44_0.150000.txt /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confMatEst.txt
313s 
313s b''
313s 2025_03_15-15_32_31: EM complete.
313s 
313s 2025_03_15-15_32_31: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 24503 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
313s 
313s b''
313s 2025_03_15-15_32_32: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 1_0_0 -ihash_st 24503 -ihash_ed 49006 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_32: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 2_0_0 -ihash_st 49006 -ihash_ed 73509 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_33: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 3_0_0 -ihash_st 73509 -ihash_ed 98012 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_34: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 4_0_0 -ihash_st 98012 -ihash_ed 122515 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_35: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 5_0_0 -ihash_st 122515 -ihash_ed 147018 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_35: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 6_0_0 -ihash_st 147018 -ihash_ed 171521 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_36: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 7_0_0 -ihash_st 171521 -ihash_ed 196024 -max_cov 24 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.hash -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/all.index
319s 
319s b''
319s 2025_03_15-15_32_37: /usr/lib/uc-echo/NeighborMerge -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 1_0_0_0 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_1_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_2_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_3_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_4_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_5_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_6_0_0.list -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_7_0_0.list
319s 
319s b''
319s 2025_03_15-15_32_37: rm /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_1_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_2_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_3_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_4_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_5_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_6_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_7_0_0.list
319s 
319s b''
319s 2025_03_15-15_32_37: mv /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_1_0_0_0.list /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list
319s 
319s b''
319s 2025_03_15-15_32_37: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/neighbors_0_0.list -confMat /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/confMatEst.txt -max_cov 24 -min_cov 0 -cov 9
319s 
319s b''
319s 2025_03_15-15_32_38: Deleting Neighbor Files...
319s 
319s 2025_03_15-15_32_38: find /tmp/autopkgtest.nXkOhA/build.PE7/src/tmp/tmp64dpzw_y/ -name neighbor* -delete
319s 
319s b''
319s 2025_03_15-15_32_38: Error correction complete.
319s 
319s 2025_03_15-15_32_38: Removing Temporary Directory...
319s 
319s 2025_03_15-15_32_38: Output is in file: output/sample_data.fastq
319s 
319s 2025_03_15-15_32_38: Total running time (h:m:s): 0:00:32.304833
319s 
319s 2025_03_15-15_32_38: End...
319s 
320s cleaning up ...
320s autopkgtest [15:32:39]: test runtest: -----------------------]
321s autopkgtest [15:32:40]: test runtest:  - - - - - - - - - - results - - - - - - - - - -
321s runtest              PASS
321s autopkgtest [15:32:40]: @@@@@@@@@@@@@@@@@@@@ summary
321s runtest              PASS
339s nova [W] Using flock in prodstack6-arm64
339s Creating nova instance adt-plucky-arm64-uc-echo-20250315-152719-juju-7f2275-prod-proposed-migration-environment-15-9507d026-65cf-4ec0-b609-7576631ebaec from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
339s nova [W] Timed out waiting for 85b6f7b4-2f55-4026-b4d8-6a66f02195f2 to get deleted.