0s autopkgtest [17:09:21]: starting date and time: 2025-03-15 17:09:21+0000 0s autopkgtest [17:09:21]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:09:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rbjrqxyf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade transrate-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-25.secgroup --name adt-plucky-arm64-transrate-tools-20250315-170920-juju-7f2275-prod-proposed-migration-environment-2-eb7cb420-1045-446f-bc3a-d055fb98c85e --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 187s autopkgtest [17:12:28]: testbed dpkg architecture: arm64 187s autopkgtest [17:12:28]: testbed apt version: 2.9.33 188s autopkgtest [17:12:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 188s autopkgtest [17:12:29]: testbed release detected to be: None 189s autopkgtest [17:12:30]: updating testbed package index (apt update) 189s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 189s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 189s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 189s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 190s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 190s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 190s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 190s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 190s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 190s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 190s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 191s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 191s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 191s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 191s Fetched 1078 kB in 2s (579 kB/s) 192s Reading package lists... 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Calculating upgrade... 193s Calculating upgrade... 194s The following packages will be upgraded: 194s pinentry-curses python3-jinja2 strace 194s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 647 kB of archives. 194s After this operation, 11.3 kB of additional disk space will be used. 194s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 195s Fetched 647 kB in 1s (659 kB/s) 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 196s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 196s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 196s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 196s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 196s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 196s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 196s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 196s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 196s Setting up strace (6.13+ds-1ubuntu1) ... 196s Processing triggers for man-db (2.13.0-1) ... 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 198s Solving dependencies... 198s The following packages will be REMOVED: 198s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 198s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 198s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 198s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 198s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 198s After this operation, 267 MB disk space will be freed. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 198s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 198s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 198s Removing libpython3.12t64:arm64 (3.12.9-1) ... 198s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 198s Removing libnsl2:arm64 (1.3.0-3build3) ... 199s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 199s Removing libunwind8:arm64 (1.6.2-3.1) ... 199s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 199s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 201s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 201s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 201s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 201s /etc/kernel/postrm.d/initramfs-tools: 201s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 201s /etc/kernel/postrm.d/zz-flash-kernel: 201s flash-kernel: Kernel 6.11.0-8-generic has been removed. 201s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 201s /etc/kernel/postrm.d/zz-update-grub: 201s Sourcing file `/etc/default/grub' 201s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 201s Generating grub configuration file ... 201s Found linux image: /boot/vmlinuz-6.14.0-10-generic 201s Found initrd image: /boot/initrd.img-6.14.0-10-generic 202s Warning: os-prober will not be executed to detect other bootable partitions. 202s Systems on them will not be added to the GRUB boot configuration. 202s Check GRUB_DISABLE_OS_PROBER documentation entry. 202s Adding boot menu entry for UEFI Firmware Settings ... 202s done 202s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 202s Processing triggers for libc-bin (2.41-1ubuntu1) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 202s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 202s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 202s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 203s autopkgtest [17:12:44]: upgrading testbed (apt dist-upgrade and autopurge) 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 204s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 204s Starting 2 pkgProblemResolver with broken count: 0 204s Done 204s Entering ResolveByKeep 205s 205s Calculating upgrade... 205s The following packages will be upgraded: 205s libc-bin libc-dev-bin libc6 libc6-dev locales 205s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Need to get 9530 kB of archives. 205s After this operation, 0 B of additional disk space will be used. 205s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 207s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 207s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 210s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 211s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 216s Preconfiguring packages ... 216s Fetched 9530 kB in 10s (924 kB/s) 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 216s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 216s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 216s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 216s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 216s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 216s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 217s Setting up libc6:arm64 (2.41-1ubuntu2) ... 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 217s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 217s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 217s Setting up libc-bin (2.41-1ubuntu2) ... 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 217s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 217s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 217s Setting up locales (2.41-1ubuntu2) ... 218s Generating locales (this might take a while)... 220s en_US.UTF-8... done 220s Generation complete. 220s Setting up libc-dev-bin (2.41-1ubuntu2) ... 220s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 220s Processing triggers for man-db (2.13.0-1) ... 221s Processing triggers for systemd (257.3-1ubuntu3) ... 222s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 223s Solving dependencies... 223s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 223s autopkgtest [17:13:04]: rebooting testbed after setup commands that affected boot 247s autopkgtest [17:13:28]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 250s autopkgtest [17:13:31]: @@@@@@@@@@@@@@@@@@@@ apt-source transrate-tools 253s Get:1 http://ftpmaster.internal/ubuntu plucky/universe transrate-tools 1.0.0-5 (dsc) [2093 B] 253s Get:2 http://ftpmaster.internal/ubuntu plucky/universe transrate-tools 1.0.0-5 (tar) [6167 B] 253s Get:3 http://ftpmaster.internal/ubuntu plucky/universe transrate-tools 1.0.0-5 (diff) [265 kB] 253s gpgv: Signature made Fri Nov 25 21:08:23 2022 UTC 253s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 253s gpgv: issuer "tille@debian.org" 253s gpgv: Can't check signature: No public key 253s dpkg-source: warning: cannot verify inline signature for ./transrate-tools_1.0.0-5.dsc: no acceptable signature found 253s autopkgtest [17:13:34]: testing package transrate-tools version 1.0.0-5 254s autopkgtest [17:13:35]: build not needed 254s autopkgtest [17:13:35]: test run-unit-test: preparing testbed 255s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Starting pkgProblemResolver with broken count: 0 255s Starting 2 pkgProblemResolver with broken count: 0 255s Done 256s The following NEW packages will be installed: 256s libbamtools2.5.2 transrate-tools 256s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 256s Need to get 410 kB of archives. 256s After this operation, 759 kB of additional disk space will be used. 256s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbamtools2.5.2 arm64 2.5.2+dfsg-6build1 [132 kB] 257s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 transrate-tools arm64 1.0.0-5 [278 kB] 257s Fetched 410 kB in 1s (514 kB/s) 257s Selecting previously unselected package libbamtools2.5.2:arm64. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 258s Preparing to unpack .../libbamtools2.5.2_2.5.2+dfsg-6build1_arm64.deb ... 258s Unpacking libbamtools2.5.2:arm64 (2.5.2+dfsg-6build1) ... 258s Selecting previously unselected package transrate-tools. 258s Preparing to unpack .../transrate-tools_1.0.0-5_arm64.deb ... 258s Unpacking transrate-tools (1.0.0-5) ... 258s Setting up libbamtools2.5.2:arm64 (2.5.2+dfsg-6build1) ... 258s Setting up transrate-tools (1.0.0-5) ... 258s Processing triggers for man-db (2.13.0-1) ... 258s Processing triggers for libc-bin (2.41-1ubuntu2) ... 259s autopkgtest [17:13:40]: test run-unit-test: [----------------------- 260s Test 1 260s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 260s NC_045512.2,0.970787,0,29903,0,0,0,0,20434,0.983136 260s Passed 260s 260s Test 2 260s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 260s NC_045512.2,0.937662,0,29903,0,0,0,0,26785,0.997311 260s Passed 260s 260s Test 3 260s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 260s NC_045512.2,0.994069,0,29903,0,0,0,0,27314,0.997307 260s Passed 260s 260s Test 4 260s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 260s NC_045512.2,0.994232,0,29903,0,0,0,0,22889,0.994879 260s Passed 260s 260s autopkgtest [17:13:41]: test run-unit-test: -----------------------] 261s autopkgtest [17:13:42]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 261s run-unit-test PASS 261s autopkgtest [17:13:42]: @@@@@@@@@@@@@@@@@@@@ summary 261s run-unit-test PASS 279s nova [W] Using flock in prodstack6-arm64 279s Creating nova instance adt-plucky-arm64-transrate-tools-20250315-170920-juju-7f2275-prod-proposed-migration-environment-2-eb7cb420-1045-446f-bc3a-d055fb98c85e from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 279s nova [W] Timed out waiting for 834a5115-da29-4b67-b468-6666ede4165c to get deleted.