0s autopkgtest [17:08:38]: starting date and time: 2025-03-15 17:08:38+0000 0s autopkgtest [17:08:38]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:08:38]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ifltkztn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade tortoize --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-2.secgroup --name adt-plucky-arm64-tortoize-20250315-170837-juju-7f2275-prod-proposed-migration-environment-20-5103e657-6b58-45e5-8642-b1f9f27c4e8f --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 177s autopkgtest [17:11:35]: testbed dpkg architecture: arm64 177s autopkgtest [17:11:35]: testbed apt version: 2.9.33 178s autopkgtest [17:11:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 178s autopkgtest [17:11:36]: testbed release detected to be: None 178s autopkgtest [17:11:36]: updating testbed package index (apt update) 179s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 179s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 179s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 180s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 180s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 180s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 180s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 180s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 180s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 180s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 180s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 180s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 181s Fetched 1078 kB in 2s (623 kB/s) 181s Reading package lists... 182s Reading package lists... 183s Building dependency tree... 183s Reading state information... 184s Calculating upgrade... 185s Calculating upgrade... 186s The following packages will be upgraded: 186s pinentry-curses python3-jinja2 strace 186s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 647 kB of archives. 186s After this operation, 11.3 kB of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 187s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 187s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 188s Fetched 647 kB in 1s (566 kB/s) 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 188s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 188s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 188s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 188s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 188s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 188s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 188s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 188s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 189s Setting up strace (6.13+ds-1ubuntu1) ... 189s Processing triggers for man-db (2.13.0-1) ... 190s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Solving dependencies... 191s The following packages will be REMOVED: 191s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 191s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 191s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 191s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 191s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 191s After this operation, 267 MB disk space will be freed. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 191s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 191s Removing libpython3.12t64:arm64 (3.12.9-1) ... 191s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 191s Removing libnsl2:arm64 (1.3.0-3build3) ... 191s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 191s Removing libunwind8:arm64 (1.6.2-3.1) ... 191s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 192s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 194s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 194s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 194s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 194s /etc/kernel/postrm.d/initramfs-tools: 194s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 194s /etc/kernel/postrm.d/zz-flash-kernel: 194s flash-kernel: Kernel 6.11.0-8-generic has been removed. 194s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 194s /etc/kernel/postrm.d/zz-update-grub: 194s Sourcing file `/etc/default/grub' 194s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 194s Generating grub configuration file ... 194s Found linux image: /boot/vmlinuz-6.14.0-10-generic 194s Found initrd image: /boot/initrd.img-6.14.0-10-generic 195s Warning: os-prober will not be executed to detect other bootable partitions. 195s Systems on them will not be added to the GRUB boot configuration. 195s Check GRUB_DISABLE_OS_PROBER documentation entry. 195s Adding boot menu entry for UEFI Firmware Settings ... 195s done 195s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s Processing triggers for libc-bin (2.41-1ubuntu1) ... 196s (Reading database ... autopkgtest [17:11:54]: upgrading testbed (apt dist-upgrade and autopurge) 196s (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 196s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 196s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 196s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 196s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s Entering ResolveByKeep 198s 198s Calculating upgrade... 199s The following packages will be upgraded: 199s libc-bin libc-dev-bin libc6 libc6-dev locales 199s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 9530 kB of archives. 199s After this operation, 0 B of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 201s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 204s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 205s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 211s Preconfiguring packages ... 211s Fetched 9530 kB in 12s (806 kB/s) 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 211s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 211s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 211s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 211s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Setting up libc6:arm64 (2.41-1ubuntu2) ... 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 212s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 212s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 212s Setting up libc-bin (2.41-1ubuntu2) ... 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 212s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 212s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 212s Setting up locales (2.41-1ubuntu2) ... 213s Generating locales (this might take a while)... 215s en_US.UTF-8... done 215s Generation complete. 215s Setting up libc-dev-bin (2.41-1ubuntu2) ... 215s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 215s Processing triggers for man-db (2.13.0-1) ... 216s Processing triggers for systemd (257.3-1ubuntu3) ... 216s Reading package lists... 217s Building dependency tree... 217s Reading state information... 217s Starting pkgProblemResolver with broken count: 0 217s Starting 2 pkgProblemResolver with broken count: 0 217s Done 217s Solving dependencies... 218s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 218s autopkgtest [17:12:16]: rebooting testbed after setup commands that affected boot 241s autopkgtest [17:12:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 244s autopkgtest [17:12:42]: @@@@@@@@@@@@@@@@@@@@ apt-source tortoize 246s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tortoize 2.0.13-1 (dsc) [2122 B] 246s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tortoize 2.0.13-1 (tar) [314 kB] 246s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tortoize 2.0.13-1 (diff) [24.7 kB] 247s gpgv: Signature made Mon Oct 28 10:04:28 2024 UTC 247s gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE 247s gpgv: issuer "maarten@hekkelman.com" 247s gpgv: Can't check signature: No public key 247s dpkg-source: warning: cannot verify inline signature for ./tortoize_2.0.13-1.dsc: no acceptable signature found 247s autopkgtest [17:12:45]: testing package tortoize version 2.0.13-1 247s autopkgtest [17:12:45]: build not needed 248s autopkgtest [17:12:46]: test run-unit-test: preparing testbed 248s Reading package lists... 248s Building dependency tree... 248s Reading state information... 248s Starting pkgProblemResolver with broken count: 0 249s Starting 2 pkgProblemResolver with broken count: 0 249s Done 249s The following NEW packages will be installed: 249s icu-devtools libasan8 libboost-regex-dev libboost-regex1.83-dev 249s libboost-regex1.83.0 libboost1.83-dev libcifpp-data libcifpp-dev libcifpp7 249s libgcc-14-dev libgomp1 libhwasan0 libicu-dev libitm1 liblsan0 249s libstdc++-14-dev libtsan2 libubsan1 libzeep5.1 tortoize zlib1g-dev 249s 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. 249s Need to get 42.8 MB of archives. 249s After this operation, 321 MB of additional disk space will be used. 249s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 250s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 253s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 253s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 253s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 254s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 257s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 258s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 260s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 263s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 266s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 277s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex1.83.0 arm64 1.83.0-4.1ubuntu2 [332 kB] 278s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 291s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex1.83-dev arm64 1.83.0-4.1ubuntu2 [351 kB] 291s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-regex-dev arm64 1.83.0.2ubuntu1 [4486 B] 291s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcifpp-data all 7.0.9-1 [481 kB] 292s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcifpp7 arm64 7.0.9-1 [997 kB] 293s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 294s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcifpp-dev arm64 7.0.9-1 [107 kB] 294s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzeep5.1 arm64 5.1.8-1build1 [625 kB] 295s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 tortoize arm64 2.0.13-1 [780 kB] 296s Preconfiguring packages ... 296s Fetched 42.8 MB in 46s (925 kB/s) 296s Selecting previously unselected package icu-devtools. 296s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 296s Preparing to unpack .../00-icu-devtools_76.1-1ubuntu2_arm64.deb ... 296s Unpacking icu-devtools (76.1-1ubuntu2) ... 296s Selecting previously unselected package libasan8:arm64. 296s Preparing to unpack .../01-libasan8_15-20250222-0ubuntu1_arm64.deb ... 296s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 296s Selecting previously unselected package libgomp1:arm64. 296s Preparing to unpack .../02-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 296s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 296s Selecting previously unselected package libitm1:arm64. 296s Preparing to unpack .../03-libitm1_15-20250222-0ubuntu1_arm64.deb ... 296s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 296s Selecting previously unselected package liblsan0:arm64. 296s Preparing to unpack .../04-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 296s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 296s Selecting previously unselected package libtsan2:arm64. 296s Preparing to unpack .../05-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 296s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 296s Selecting previously unselected package libubsan1:arm64. 296s Preparing to unpack .../06-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 296s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 297s Selecting previously unselected package libhwasan0:arm64. 297s Preparing to unpack .../07-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 297s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 297s Selecting previously unselected package libgcc-14-dev:arm64. 297s Preparing to unpack .../08-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 297s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 297s Selecting previously unselected package libstdc++-14-dev:arm64. 297s Preparing to unpack .../09-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 297s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 297s Selecting previously unselected package libboost1.83-dev:arm64. 297s Preparing to unpack .../10-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 297s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 298s Selecting previously unselected package libboost-regex1.83.0:arm64. 298s Preparing to unpack .../11-libboost-regex1.83.0_1.83.0-4.1ubuntu2_arm64.deb ... 298s Unpacking libboost-regex1.83.0:arm64 (1.83.0-4.1ubuntu2) ... 299s Selecting previously unselected package libicu-dev:arm64. 299s Preparing to unpack .../12-libicu-dev_76.1-1ubuntu2_arm64.deb ... 299s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 299s Selecting previously unselected package libboost-regex1.83-dev:arm64. 299s Preparing to unpack .../13-libboost-regex1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 299s Unpacking libboost-regex1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 299s Selecting previously unselected package libboost-regex-dev:arm64. 299s Preparing to unpack .../14-libboost-regex-dev_1.83.0.2ubuntu1_arm64.deb ... 299s Unpacking libboost-regex-dev:arm64 (1.83.0.2ubuntu1) ... 299s Selecting previously unselected package libcifpp-data. 299s Preparing to unpack .../15-libcifpp-data_7.0.9-1_all.deb ... 299s Unpacking libcifpp-data (7.0.9-1) ... 299s Selecting previously unselected package libcifpp7:arm64. 299s Preparing to unpack .../16-libcifpp7_7.0.9-1_arm64.deb ... 299s Unpacking libcifpp7:arm64 (7.0.9-1) ... 299s Selecting previously unselected package zlib1g-dev:arm64. 299s Preparing to unpack .../17-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 299s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 299s Selecting previously unselected package libcifpp-dev:arm64. 299s Preparing to unpack .../18-libcifpp-dev_7.0.9-1_arm64.deb ... 299s Unpacking libcifpp-dev:arm64 (7.0.9-1) ... 299s Selecting previously unselected package libzeep5.1. 299s Preparing to unpack .../19-libzeep5.1_5.1.8-1build1_arm64.deb ... 299s Unpacking libzeep5.1 (5.1.8-1build1) ... 299s Selecting previously unselected package tortoize. 299s Preparing to unpack .../20-tortoize_2.0.13-1_arm64.deb ... 299s Unpacking tortoize (2.0.13-1) ... 299s Setting up libboost-regex1.83.0:arm64 (1.83.0-4.1ubuntu2) ... 299s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 299s Setting up icu-devtools (76.1-1ubuntu2) ... 299s Setting up libcifpp-data (7.0.9-1) ... 299s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 299s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 299s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libzeep5.1 (5.1.8-1build1) ... 299s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 299s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libcifpp7:arm64 (7.0.9-1) ... 299s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 299s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 299s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 299s Setting up tortoize (2.0.13-1) ... 299s Setting up libboost-regex1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 299s Setting up libboost-regex-dev:arm64 (1.83.0.2ubuntu1) ... 299s Setting up libcifpp-dev:arm64 (7.0.9-1) ... 299s Processing triggers for man-db (2.13.0-1) ... 301s Processing triggers for libc-bin (2.41-1ubuntu2) ... 302s autopkgtest [17:13:40]: test run-unit-test: [----------------------- 302s + pkg=tortoize 302s + testfile=/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz 302s + '[' /tmp/autopkgtest.WdkSUU/autopkgtest_tmp = '' ']' 302s + cd /tmp/autopkgtest.WdkSUU/autopkgtest_tmp 302s + tortoize /usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz 1cbs.json 302s 302s Configuration error: 302s 302s The attempt to retrieve compound information for "ALA" failed. 302s 302s This information is searched for in a CCD file called components.cif or 302s components.cif.gz which should be located in one of the following directories: 302s 302s "/var/cache/libcifpp" 302s "/usr/share/libcifpp" 302s "/usr/share/libcifpp" 302s 302s (Note that you can add a directory to the search paths by setting the 302s LIBCIFPP_DATA_DIR environmental variable) 302s 302s On Linux an optional cron script might have been installed that automatically updates 302s components.cif and mmCIF dictionary files. This script only works when the file 302s libcifpp.conf contains an uncommented line with the text: 302s 302s update=true 302s 302s If you do not have a working cron script, you can manually update the files 302s in /var/cache/libcifpp using the following commands: 302s 302s curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif 302s curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic 302s curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic 302s 302s The current order of compound factory objects is: 302s 302s CCD components.cif resource 302s Unknown compound: ALA 302s Unknown compound: ARG 302s Unknown compound: ASN 302s Unknown compound: ASP 302s Unknown compound: CYS 302s Unknown compound: GLN 302s Unknown compound: GLU 302s Unknown compound: GLY 302s Unknown compound: HOH 302s Unknown compound: ILE 302s Unknown compound: LEU 302s Unknown compound: LYS 302s Unknown compound: MET 302s Unknown compound: PHE 302s Unknown compound: PRO 302s Unknown compound: REA 302s Unknown compound: SER 302s Unknown compound: THR 302s Unknown compound: TRP 302s Unknown compound: TYR 302s Unknown compound: VAL 302s Missing compound information for PRO 302s Missing compound information for ASN 302s Missing compound information for PHE 302s Missing compound information for SER 302s Missing compound information for GLY 302s Missing compound information for TRP 302s Missing compound information for LYS 302s Missing compound information for ILE 302s Missing compound information for ARG 302s Missing compound information for GLU 302s Missing compound information for LEU 302s Missing compound information for VAL 302s Missing compound information for MET 302s Missing compound information for ALA 302s Missing compound information for GLN 302s Missing compound information for ASP 302s Missing compound information for THR 302s Missing compound information for TYR 302s Missing compound information for CYS 302s Missing compound information for REA 302s Missing compound information for HOH 302s + '[' -s 1cbs.json ']' 302s autopkgtest [17:13:40]: test run-unit-test: -----------------------] 303s autopkgtest [17:13:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 303s run-unit-test PASS 303s autopkgtest [17:13:41]: @@@@@@@@@@@@@@@@@@@@ summary 303s run-unit-test PASS 308s nova [W] Using flock in prodstack6-arm64 308s Creating nova instance adt-plucky-arm64-tortoize-20250315-170837-juju-7f2275-prod-proposed-migration-environment-20-5103e657-6b58-45e5-8642-b1f9f27c4e8f from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 308s nova [W] Timed out waiting for a97581a5-58d4-4fd8-98c5-c68c3632c21f to get deleted.