0s autopkgtest [17:06:47]: starting date and time: 2025-03-15 17:06:47+0000 0s autopkgtest [17:06:47]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:06:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p5on6u31/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade tigr-glimmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-19.secgroup --name adt-plucky-arm64-tigr-glimmer-20250315-170647-juju-7f2275-prod-proposed-migration-environment-2-5b90d3ee-bf2c-4471-921f-532536570ec2 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 170s autopkgtest [17:09:37]: testbed dpkg architecture: arm64 170s autopkgtest [17:09:37]: testbed apt version: 2.9.33 170s autopkgtest [17:09:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 170s autopkgtest [17:09:37]: testbed release detected to be: None 171s autopkgtest [17:09:38]: updating testbed package index (apt update) 172s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 172s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 172s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 172s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 172s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 172s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 173s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 173s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 173s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 173s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 173s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 173s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 173s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 173s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 174s Fetched 1078 kB in 2s (669 kB/s) 174s Reading package lists... 175s Reading package lists... 175s Building dependency tree... 175s Reading state information... 176s Calculating upgrade... 176s Calculating upgrade... 177s The following packages will be upgraded: 177s pinentry-curses python3-jinja2 strace 177s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 177s Need to get 647 kB of archives. 177s After this operation, 11.3 kB of additional disk space will be used. 177s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 178s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 178s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 178s Fetched 647 kB in 1s (614 kB/s) 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 178s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 178s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 178s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 178s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 179s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 179s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 179s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 179s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 179s Setting up strace (6.13+ds-1ubuntu1) ... 179s Processing triggers for man-db (2.13.0-1) ... 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Solving dependencies... 181s The following packages will be REMOVED: 181s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 181s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 181s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 181s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 181s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 181s After this operation, 267 MB disk space will be freed. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 181s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 181s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 181s Removing libpython3.12t64:arm64 (3.12.9-1) ... 181s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 181s Removing libnsl2:arm64 (1.3.0-3build3) ... 181s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 181s Removing libunwind8:arm64 (1.6.2-3.1) ... 181s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 182s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 184s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 184s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 184s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 184s /etc/kernel/postrm.d/initramfs-tools: 184s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 184s /etc/kernel/postrm.d/zz-flash-kernel: 184s flash-kernel: Kernel 6.11.0-8-generic has been removed. 184s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 185s /etc/kernel/postrm.d/zz-update-grub: 185s Sourcing file `/etc/default/grub' 185s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 185s Generating grub configuration file ... 185s Found linux image: /boot/vmlinuz-6.14.0-10-generic 185s Found initrd image: /boot/initrd.img-6.14.0-10-generic 185s Warning: os-prober will not be executed to detect other bootable partitions. 185s Systems on them will not be added to the GRUB boot configuration. 185s Check GRUB_DISABLE_OS_PROBER documentation entry. 185s Adding boot menu entry for UEFI Firmware Settings ... 185s done 185s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 186s Processing triggers for libc-bin (2.41-1ubuntu1) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 186s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 186s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 186s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 186s autopkgtest [17:09:53]: upgrading testbed (apt dist-upgrade and autopurge) 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 188s Entering ResolveByKeep 188s 188s Calculating upgrade... 189s The following packages will be upgraded: 189s libc-bin libc-dev-bin libc6 libc6-dev locales 189s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 9530 kB of archives. 189s After this operation, 0 B of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 191s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 191s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 195s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 195s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 201s Preconfiguring packages ... 201s Fetched 9530 kB in 11s (831 kB/s) 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 201s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 201s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 201s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 201s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 201s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 201s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 201s Setting up libc6:arm64 (2.41-1ubuntu2) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 202s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 202s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Setting up libc-bin (2.41-1ubuntu2) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 202s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 202s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Setting up locales (2.41-1ubuntu2) ... 203s Generating locales (this might take a while)... 205s en_US.UTF-8... done 205s Generation complete. 205s Setting up libc-dev-bin (2.41-1ubuntu2) ... 205s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 205s Processing triggers for man-db (2.13.0-1) ... 206s Processing triggers for systemd (257.3-1ubuntu3) ... 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 208s Solving dependencies... 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [17:10:16]: rebooting testbed after setup commands that affected boot 233s autopkgtest [17:10:40]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 236s autopkgtest [17:10:43]: @@@@@@@@@@@@@@@@@@@@ apt-source tigr-glimmer 245s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (dsc) [2104 B] 245s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (tar) [5638 kB] 245s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (diff) [20.5 kB] 245s gpgv: Signature made Sat Oct 16 18:40:48 2021 UTC 245s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 245s gpgv: issuer "emollier@debian.org" 245s gpgv: Can't check signature: No public key 245s dpkg-source: warning: cannot verify inline signature for ./tigr-glimmer_3.02b-6.dsc: no acceptable signature found 245s autopkgtest [17:10:52]: testing package tigr-glimmer version 3.02b-6 246s autopkgtest [17:10:53]: build not needed 247s autopkgtest [17:10:54]: test run-unit-test: preparing testbed 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 248s Starting pkgProblemResolver with broken count: 0 248s Starting 2 pkgProblemResolver with broken count: 0 248s Done 249s The following NEW packages will be installed: 249s tigr-glimmer 249s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 249s Need to get 268 kB of archives. 249s After this operation, 560 kB of additional disk space will be used. 249s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 tigr-glimmer arm64 3.02b-6 [268 kB] 250s Fetched 268 kB in 1s (469 kB/s) 250s Selecting previously unselected package tigr-glimmer. 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 250s Preparing to unpack .../tigr-glimmer_3.02b-6_arm64.deb ... 250s Unpacking tigr-glimmer (3.02b-6) ... 250s Setting up tigr-glimmer (3.02b-6) ... 250s Processing triggers for man-db (2.13.0-1) ... 252s autopkgtest [17:10:59]: test run-unit-test: [----------------------- 252s Begin Test 252s Starting at Sat Mar 15 17:11:00 2025 252s 252s Sequence file = example.fa 252s Excluded regions file = none 252s Circular genome = true 252s Initial minimum gene length = 90 bp 252s Determine optimal min gene length to maximize number of genes 252s Maximum overlap bases = 30 252s Start codons = atg,gtg,ttg 252s Stop codons = taa,tag,tga 252s Sequence length = 149 252s Final minimum gene length = 90 252s Number of genes = 1 252s Total bases = 114 252s Starting at Sat Mar 15 17:11:00 2025 252s 252s Sequence file = example.fa 252s Number of sequences = 4 252s ICM model file = test1.icm 252s Excluded regions file = none 252s List of orfs file = none 252s Input is NOT separate orfs 252s Independent (non-coding) scores are used 252s Circular genome = true 252s Truncated orfs = false 252s Minimum gene length = 100 bp 252s Maximum overlap bases = 30 252s Threshold score = 30 252s Use first start codon = false 252s Start codons = atg,gtg,ttg 252s Start probs = 0.600,0.300,0.100 252s Stop codons = taa,tag,tga 252s GC percentage = 81.4% 252s Ignore score on orfs longer than 3683 252s Analyzing Sequence #1 252s Start Find_Orfs 252s Start Score_Orfs 252s Start Process_Events 252s Start Trace_Back 252s Analyzing Sequence #2 252s Start Find_Orfs 252s Start Score_Orfs 252s Start Process_Events 252s Start Trace_Back 252s Analyzing Sequence #3 252s Start Find_Orfs 252s Start Score_Orfs 252s Start Process_Events 252s Start Trace_Back 252s Analyzing Sequence #4 252s Start Find_Orfs 252s Start Score_Orfs 252s Start Process_Events 252s Start Trace_Back 252s ---------------Passed!---------------------------- 252s autopkgtest [17:10:59]: test run-unit-test: -----------------------] 253s autopkgtest [17:11:00]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 253s run-unit-test PASS 253s autopkgtest [17:11:00]: @@@@@@@@@@@@@@@@@@@@ summary 253s run-unit-test PASS 271s nova [W] Using flock in prodstack6-arm64 271s Creating nova instance adt-plucky-arm64-tigr-glimmer-20250315-170647-juju-7f2275-prod-proposed-migration-environment-2-5b90d3ee-bf2c-4471-921f-532536570ec2 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 271s nova [W] Timed out waiting for f5b63842-75e7-4fda-9606-02a9d4fbae02 to get deleted.