0s autopkgtest [16:48:14]: starting date and time: 2025-03-15 16:48:14+0000 1s autopkgtest [16:48:15]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 1s autopkgtest [16:48:15]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.q_6gi6m4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade tiddit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-23.secgroup --name adt-plucky-arm64-tiddit-20250315-164814-juju-7f2275-prod-proposed-migration-environment-20-09975ab1-f66f-4e91-8903-4a0568051874 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 136s autopkgtest [16:50:30]: testbed dpkg architecture: arm64 136s autopkgtest [16:50:30]: testbed apt version: 2.9.33 137s autopkgtest [16:50:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 137s autopkgtest [16:50:31]: testbed release detected to be: None 138s autopkgtest [16:50:32]: updating testbed package index (apt update) 138s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 138s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 138s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 138s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 138s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 139s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 139s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 139s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 139s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 139s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 139s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 140s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 140s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 140s Fetched 1078 kB in 2s (593 kB/s) 141s Reading package lists... 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 143s Calculating upgrade... 143s Calculating upgrade... 143s The following packages will be upgraded: 143s pinentry-curses python3-jinja2 strace 144s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 647 kB of archives. 144s After this operation, 11.3 kB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 144s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 144s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 145s Fetched 647 kB in 1s (597 kB/s) 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 145s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 145s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 145s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 145s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 145s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 146s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 146s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 146s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 146s Setting up strace (6.13+ds-1ubuntu1) ... 146s Processing triggers for man-db (2.13.0-1) ... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Solving dependencies... 148s The following packages will be REMOVED: 148s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 148s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 148s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 148s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 148s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 148s After this operation, 267 MB disk space will be freed. 148s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 148s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 148s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 148s Removing libpython3.12t64:arm64 (3.12.9-1) ... 148s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 149s Removing libnsl2:arm64 (1.3.0-3build3) ... 149s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 149s Removing libunwind8:arm64 (1.6.2-3.1) ... 149s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 151s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 151s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 151s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 151s /etc/kernel/postrm.d/initramfs-tools: 151s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 151s /etc/kernel/postrm.d/zz-flash-kernel: 151s flash-kernel: Kernel 6.11.0-8-generic has been removed. 151s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 151s /etc/kernel/postrm.d/zz-update-grub: 151s Sourcing file `/etc/default/grub' 151s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 151s Generating grub configuration file ... 152s Found linux image: /boot/vmlinuz-6.14.0-10-generic 152s Found initrd image: /boot/initrd.img-6.14.0-10-generic 152s Warning: os-prober will not be executed to detect other bootable partitions. 152s Systems on them will not be added to the GRUB boot configuration. 152s Check GRUB_DISABLE_OS_PROBER documentation entry. 152s Adding boot menu entry for UEFI Firmware Settings ... 152s done 152s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 152s Processing triggers for libc-bin (2.41-1ubuntu1) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 153s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 153s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 153s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 153s autopkgtest [16:50:47]: upgrading testbed (apt dist-upgrade and autopurge) 153s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 154s Starting 2 pkgProblemResolver with broken count: 0 154s Done 155s Entering ResolveByKeep 156s 156s Calculating upgrade... 156s The following packages will be upgraded: 156s libc-bin libc-dev-bin libc6 libc6-dev locales 156s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 9530 kB of archives. 156s After this operation, 0 B of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 159s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 159s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 162s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 163s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 169s Preconfiguring packages ... 170s Fetched 9530 kB in 12s (772 kB/s) 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 170s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 170s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 170s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 170s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 170s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 170s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 170s Setting up libc6:arm64 (2.41-1ubuntu2) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 171s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 171s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Setting up libc-bin (2.41-1ubuntu2) ... 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 171s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 171s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 171s Setting up locales (2.41-1ubuntu2) ... 172s Generating locales (this might take a while)... 179s en_US.UTF-8... done 179s Generation complete. 179s Setting up libc-dev-bin (2.41-1ubuntu2) ... 179s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 179s Processing triggers for man-db (2.13.0-1) ... 180s Processing triggers for systemd (257.3-1ubuntu3) ... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 183s Starting 2 pkgProblemResolver with broken count: 0 183s Done 183s Solving dependencies... 185s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s autopkgtest [16:51:19]: rebooting testbed after setup commands that affected boot 207s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 214s autopkgtest [16:51:48]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 217s autopkgtest [16:51:51]: @@@@@@@@@@@@@@@@@@@@ apt-source tiddit 222s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-2build1 (dsc) [2105 B] 222s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-2build1 (tar) [19.5 kB] 222s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-2build1 (diff) [1732 kB] 222s gpgv: Signature made Tue Mar 4 16:30:52 2025 UTC 222s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./tiddit_3.6.1+dfsg-2build1.dsc: no acceptable signature found 222s autopkgtest [16:51:56]: testing package tiddit version 3.6.1+dfsg-2build1 223s autopkgtest [16:51:57]: build not needed 224s autopkgtest [16:51:58]: test run-unit-test: preparing testbed 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 225s The following NEW packages will be installed: 225s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 225s python3-joblib python3-numpy python3-numpy-dev python3-pysam samtools tiddit 226s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 12.4 MB of archives. 226s After this operation, 71.4 MB of additional disk space will be used. 226s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 226s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 226s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 227s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 230s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 234s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 234s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 234s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 234s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 235s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pysam arm64 0.23.0+ds-1build1 [3621 kB] 239s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 samtools arm64 1.21-1 [609 kB] 240s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 tiddit arm64 3.6.1+dfsg-2build1 [310 kB] 240s Fetched 12.4 MB in 14s (859 kB/s) 240s Selecting previously unselected package python3-numpy-dev:arm64. 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 241s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 241s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 241s Selecting previously unselected package libblas3:arm64. 241s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 241s Unpacking libblas3:arm64 (3.12.1-2) ... 241s Selecting previously unselected package libgfortran5:arm64. 241s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 241s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package liblapack3:arm64. 241s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 241s Unpacking liblapack3:arm64 (3.12.1-2) ... 241s Selecting previously unselected package python3-numpy. 241s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 241s Unpacking python3-numpy (1:2.2.3+ds-5) ... 241s Selecting previously unselected package libdeflate0:arm64. 241s Preparing to unpack .../05-libdeflate0_1.23-1_arm64.deb ... 241s Unpacking libdeflate0:arm64 (1.23-1) ... 241s Selecting previously unselected package libhtscodecs2:arm64. 241s Preparing to unpack .../06-libhtscodecs2_1.6.1-2_arm64.deb ... 241s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 241s Selecting previously unselected package libhts3t64:arm64. 241s Preparing to unpack .../07-libhts3t64_1.21+ds-1_arm64.deb ... 241s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 241s Selecting previously unselected package python3-joblib. 241s Preparing to unpack .../08-python3-joblib_1.4.2-3_all.deb ... 241s Unpacking python3-joblib (1.4.2-3) ... 241s Selecting previously unselected package python3-pysam. 241s Preparing to unpack .../09-python3-pysam_0.23.0+ds-1build1_arm64.deb ... 241s Unpacking python3-pysam (0.23.0+ds-1build1) ... 241s Selecting previously unselected package samtools. 241s Preparing to unpack .../10-samtools_1.21-1_arm64.deb ... 241s Unpacking samtools (1.21-1) ... 241s Selecting previously unselected package tiddit. 241s Preparing to unpack .../11-tiddit_3.6.1+dfsg-2build1_arm64.deb ... 241s Unpacking tiddit (3.6.1+dfsg-2build1) ... 242s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 242s Setting up python3-joblib (1.4.2-3) ... 242s Setting up libdeflate0:arm64 (1.23-1) ... 242s Setting up libblas3:arm64 (3.12.1-2) ... 242s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 242s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 242s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 242s Setting up libhts3t64:arm64 (1.21+ds-1) ... 242s Setting up liblapack3:arm64 (3.12.1-2) ... 242s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 242s Setting up python3-pysam (0.23.0+ds-1build1) ... 242s Setting up samtools (1.21-1) ... 242s Setting up python3-numpy (1:2.2.3+ds-5) ... 244s Setting up tiddit (3.6.1+dfsg-2build1) ... 244s Processing triggers for man-db (2.13.0-1) ... 245s Processing triggers for libc-bin (2.41-1ubuntu2) ... 246s autopkgtest [16:52:20]: test run-unit-test: [----------------------- 247s + echo 'Test 1' 247s + tiddit --cov --bam normal.bam -o test1 247s Test 1 256s + tiddit --cov -w --bam normal.bam -o test1 261s + for f in test1.* 261s + '[' -s test1.bed ']' 261s + cat test1.bed 261s + tail -20 262s + for f in test1.* 262s + '[' -s test1.wig ']' 262s + cat test1.wig 262s + tail -20 262s hs37d5 35468001 35468501 0.0 262s hs37d5 35468501 35469001 0.0 262s hs37d5 35469001 35469501 0.0 262s hs37d5 35469501 35470001 0.0 262s hs37d5 35470001 35470501 0.0 262s hs37d5 35470501 35471001 0.0 262s hs37d5 35471001 35471501 0.0 262s hs37d5 35471501 35472001 0.0 262s hs37d5 35472001 35472501 0.0 262s hs37d5 35472501 35473001 0.0 262s hs37d5 35473001 35473501 0.0 262s hs37d5 35473501 35474001 0.0 262s hs37d5 35474001 35474501 0.0 262s hs37d5 35474501 35475001 0.0 262s hs37d5 35475001 35475501 0.0 262s hs37d5 35475501 35476001 0.0 262s hs37d5 35476001 35476501 0.0 262s hs37d5 35476501 35477001 0.0 262s hs37d5 35477001 35477501 0.0 262s hs37d5 35477501 35477943 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s 0.0 262s + rm -f ./test1.bed ./test1.wig 262s + echo PASS 262s + echo 'Test 2' 262s + tiddit --cov --bam normal.bam -o test2 262s PASS 262s Test 2 270s + tiddit --cov -w --bam tumor.bam -o test2 276s + for f in test2.* 276s + '[' -s test2.bed ']' 276s + cat test2.bed 276s + tail -20 276s + for f in test2.* 276s + '[' -s test2.wig ']' 276s hs37d5 35468001 35468501 0.0 276s hs37d5 35468501 35469001 0.0 276s hs37d5 35469001 35469501 0.0 276s hs37d5 35469501 35470001 0.0 276s hs37d5 35470001 35470501 0.0 276s hs37d5 35470501 35471001 0.0 276s hs37d5 35471001 35471501 0.0 276s hs37d5 35471501 35472001 0.0 276s hs37d5 35472001 35472501 0.0 276s hs37d5 35472501 35473001 0.0 276s hs37d5 35473001 35473501 0.0 276s hs37d5 35473501 35474001 0.0 276s hs37d5 35474001 35474501 0.0 276s hs37d5 35474501 35475001 0.0 276s hs37d5 35475001 35475501 0.0 276s hs37d5 35475501 35476001 0.0 276s hs37d5 35476001 35476501 0.0 276s hs37d5 35476501 35477001 0.0 276s hs37d5 35477001 35477501 0.0 276s hs37d5 35477501 35477943 0.0 276s + cat test2.wig 276s + tail -20 276s + rm -f ./test2.bed ./test2.wig 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s 0.0 276s + echo PASS 276s PASS 277s autopkgtest [16:52:51]: test run-unit-test: -----------------------] 277s autopkgtest [16:52:51]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 277s run-unit-test PASS 278s autopkgtest [16:52:52]: @@@@@@@@@@@@@@@@@@@@ summary 278s run-unit-test PASS 295s nova [W] Using flock in prodstack6-arm64 295s Creating nova instance adt-plucky-arm64-tiddit-20250315-164814-juju-7f2275-prod-proposed-migration-environment-20-09975ab1-f66f-4e91-8903-4a0568051874 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 295s nova [W] Timed out waiting for eaca1622-b1ff-4d2c-ac31-49ff5f078756 to get deleted.