0s autopkgtest [17:02:42]: starting date and time: 2025-03-15 17:02:42+0000 0s autopkgtest [17:02:42]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:02:42]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g5irysy0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade t-coffee --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-12.secgroup --name adt-plucky-arm64-t-coffee-20250315-170241-juju-7f2275-prod-proposed-migration-environment-15-92b6b856-0678-4bc5-9670-a22cd644fc97 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 174s autopkgtest [17:05:36]: testbed dpkg architecture: arm64 174s autopkgtest [17:05:36]: testbed apt version: 2.9.33 175s autopkgtest [17:05:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 175s autopkgtest [17:05:37]: testbed release detected to be: None 176s autopkgtest [17:05:38]: updating testbed package index (apt update) 176s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 176s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 176s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 177s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 177s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 177s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 177s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 177s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 177s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 177s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 177s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 178s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 178s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 178s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 178s Fetched 1078 kB in 2s (672 kB/s) 179s Reading package lists... 179s + lsb_release --codename --short 179s + RELEASE=plucky 179s + cat 179s + [ plucky != trusty ] 179s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Calculating upgrade... 180s Calculating upgrade... 181s The following packages will be upgraded: 181s pinentry-curses python3-jinja2 strace 181s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 647 kB of archives. 181s After this operation, 11.3 kB of additional disk space will be used. 181s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 182s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 182s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 183s Fetched 647 kB in 1s (526 kB/s) 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 183s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 183s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 183s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 183s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 183s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 183s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 183s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 183s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 183s Setting up strace (6.13+ds-1ubuntu1) ... 183s Processing triggers for man-db (2.13.0-1) ... 184s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 184s + /usr/lib/apt/apt-helper analyze-pattern ?true 184s + uname -r 184s + sed s/\./\\./g 184s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 184s + apt list ?obsolete 184s + + tail -n+2 184s cut -d/ -f1 184s + grep -v ^linux-.*6\.14\.0-10-generic.* 185s + obsolete_pkgs=linux-headers-6.11.0-8-generic 185s linux-headers-6.11.0-8 185s linux-image-6.11.0-8-generic 185s linux-modules-6.11.0-8-generic 185s linux-tools-6.11.0-8-generic 185s linux-tools-6.11.0-8 185s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Solving dependencies... 186s The following packages will be REMOVED: 186s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 186s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 186s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 186s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 186s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 186s After this operation, 267 MB disk space will be freed. 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 186s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 186s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 186s Removing libpython3.12t64:arm64 (3.12.9-1) ... 186s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 186s Removing libnsl2:arm64 (1.3.0-3build3) ... 186s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 186s Removing libunwind8:arm64 (1.6.2-3.1) ... 186s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 187s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 188s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 188s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 188s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 188s /etc/kernel/postrm.d/initramfs-tools: 188s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 189s /etc/kernel/postrm.d/zz-flash-kernel: 189s flash-kernel: Kernel 6.11.0-8-generic has been removed. 189s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 189s /etc/kernel/postrm.d/zz-update-grub: 189s Sourcing file `/etc/default/grub' 189s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 189s Generating grub configuration file ... 189s Found linux image: /boot/vmlinuz-6.14.0-10-generic 189s Found initrd image: /boot/initrd.img-6.14.0-10-generic 189s Warning: os-prober will not be executed to detect other bootable partitions. 189s Systems on them will not be added to the GRUB boot configuration. 189s Check GRUB_DISABLE_OS_PROBER documentation entry. 189s Adding boot menu entry for UEFI Firmware Settings ... 189s done 189s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 190s Processing triggers for libc-bin (2.41-1ubuntu1) ... 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 190s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 190s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 190s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 190s + grep -q trusty /etc/lsb-release 190s + [ ! -d /usr/share/doc/unattended-upgrades ] 190s + [ ! -d /usr/share/doc/lxd ] 190s + [ ! -d /usr/share/doc/lxd-client ] 190s + [ ! -d /usr/share/doc/snapd ] 190s + type iptables 190s + cat 190s + chmod 755 /etc/rc.local 190s + . /etc/rc.local 190s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 190s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 190s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 190s + uname -m 190s + [ aarch64 = ppc64le ] 190s + [ -d /run/systemd/system ] 190s + systemd-detect-virt --quiet --vm 190s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 190s + cat 190s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 190s + echo COMPRESS=lz4 190s autopkgtest [17:05:52]: upgrading testbed (apt dist-upgrade and autopurge) 190s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 191s Starting 2 pkgProblemResolver with broken count: 0 191s Done 192s Entering ResolveByKeep 192s 193s Calculating upgrade... 193s The following packages will be upgraded: 193s libc-bin libc-dev-bin libc6 libc6-dev locales 193s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s Need to get 9530 kB of archives. 193s After this operation, 0 B of additional disk space will be used. 193s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 195s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 198s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 199s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 204s Preconfiguring packages ... 204s Fetched 9530 kB in 11s (869 kB/s) 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 204s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 204s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 205s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 205s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc6:arm64 (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 205s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 205s Setting up libc-bin (2.41-1ubuntu2) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 205s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 205s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 206s Setting up locales (2.41-1ubuntu2) ... 206s Generating locales (this might take a while)... 208s en_US.UTF-8... done 208s Generation complete. 208s Setting up libc-dev-bin (2.41-1ubuntu2) ... 208s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 208s Processing triggers for man-db (2.13.0-1) ... 209s Processing triggers for systemd (257.3-1ubuntu3) ... 210s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Starting pkgProblemResolver with broken count: 0 211s Starting 2 pkgProblemResolver with broken count: 0 211s Done 211s Solving dependencies... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s autopkgtest [17:06:15]: rebooting testbed after setup commands that affected boot 237s autopkgtest [17:06:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 240s autopkgtest [17:06:42]: @@@@@@@@@@@@@@@@@@@@ apt-source t-coffee 247s Get:1 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (dsc) [2391 B] 247s Get:2 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (tar) [3230 kB] 247s Get:3 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (diff) [18.3 kB] 247s gpgv: Signature made Fri Nov 25 10:17:33 2022 UTC 247s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 247s gpgv: issuer "tille@debian.org" 247s gpgv: Can't check signature: No public key 247s dpkg-source: warning: cannot verify inline signature for ./t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc: no acceptable signature found 248s autopkgtest [17:06:50]: testing package t-coffee version 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 248s autopkgtest [17:06:50]: build not needed 249s autopkgtest [17:06:51]: test run-unit-test: preparing testbed 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 250s Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 251s The following NEW packages will be installed: 251s t-coffee t-coffee-examples 251s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 251s Need to get 3532 kB of archives. 251s After this operation, 8046 kB of additional disk space will be used. 251s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 t-coffee arm64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [879 kB] 253s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 t-coffee-examples all 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [2653 kB] 256s Fetched 3532 kB in 5s (764 kB/s) 256s Selecting previously unselected package t-coffee. 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 256s Preparing to unpack .../t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_arm64.deb ... 256s Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 256s Selecting previously unselected package t-coffee-examples. 257s Preparing to unpack .../t-coffee-examples_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_all.deb ... 257s Unpacking t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 257s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 257s Setting up t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 257s Processing triggers for man-db (2.13.0-1) ... 259s autopkgtest [17:07:01]: test run-unit-test: [----------------------- 259s 259s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 259s -full_log S [0] 259s -genepred_score S [0] nsd 259s -run_name S [0] 259s -mem_mode S [0] mem 259s -extend D [1] 1 259s -extend_mode S [0] very_fast_triplet 259s -max_n_pair D [0] 10 259s -seq_name_for_quadruplet S [0] all 259s -compact S [0] default 259s -clean S [0] no 259s -do_self FL [0] 0 259s -do_normalise D [0] 1000 259s -template_file S [0] 259s -setenv S [0] 0 259s -export S [0] 0 259s -template_mode S [0] 259s -flip D [0] 0 259s -remove_template_file D [0] 0 259s -profile_template_file S [0] 259s -in S [0] 259s -seq S [1] sample_rnaseq1.fasta 259s -aln S [0] 259s -method_limits S [0] 259s -method S [0] 259s -lib S [0] 260s -profile S [0] 260s -profile1 S [0] 260s -profile2 S [0] 260s -pdb S [0] 260s -relax_lib D [0] 1 260s -filter_lib D [0] 0 260s -shrink_lib D [0] 0 260s -out_lib W_F [0] no 260s -out_lib_mode S [0] primary 260s -lib_only D [0] 0 260s -outseqweight W_F [0] no 260s -seq_source S [0] ANY 260s -cosmetic_penalty D [0] 0 260s -gapopen D [0] 0 260s -gapext D [0] 0 260s -fgapopen D [0] 0 260s -fgapext D [0] 0 260s -nomatch D [0] 0 260s -newtree W_F [0] default 260s -tree W_F [0] NO 260s -usetree R_F [0] 260s -tree_mode S [0] nj 260s -distance_matrix_mode S [0] ktup 260s -distance_matrix_sim_mode S [0] idmat_sim1 260s -quicktree FL [0] 0 260s -outfile W_F [0] default 260s -maximise FL [1] 1 260s -output S [0] aln html 260s -len D [0] 0 260s -infile R_F [0] 260s -matrix S [0] default 260s -tg_mode D [0] 1 260s -profile_mode S [0] cw_profile_profile 260s -profile_comparison S [0] profile 260s -dp_mode S [0] linked_pair_wise 260s -ktuple D [0] 1 260s -ndiag D [0] 0 260s -diag_threshold D [0] 0 260s -diag_mode D [0] 0 260s -sim_matrix S [0] vasiliky 260s -transform S [0] 260s -extend_seq FL [0] 0 260s -outorder S [0] input 260s -inorder S [0] aligned 260s -seqnos S [0] off 260s -case S [0] keep 260s -cpu D [0] 0 260s -ulimit D [0] -1 260s -maxnseq D [0] -1 260s -maxlen D [0] -1 260s -sample_dp D [0] 0 260s -weight S [0] default 260s -seq_weight S [0] no 260s -align FL [1] 1 260s -mocca FL [0] 0 260s -domain FL [0] 0 260s -start D [0] 0 260s -len D [0] 0 260s -scale D [0] 0 260s -mocca_interactive FL [0] 0 260s -method_evaluate_mode S [0] default 260s -color_mode S [0] new 260s -aln_line_length D [0] 0 260s -evaluate_mode S [0] triplet 260s -get_type FL [0] 0 260s -clean_aln D [0] 0 260s -clean_threshold D [1] 1 260s -clean_iteration D [1] 1 260s -clean_evaluate_mode S [0] t_coffee_fast 260s -extend_matrix FL [0] 0 260s -prot_min_sim D [40] 40 260s -prot_max_sim D [90] 90 260s -prot_trim D [20] 20 260s -prot_min_cov D [40] 40 260s -pdb_type S [0] d 260s -pdb_min_sim D [35] 35 260s -pdb_max_sim D [100] 100 260s -pdb_min_cov D [50] 50 260s -pdb_blast_server W_F [0] EBI 260s -blast W_F [0] 260s -blast_server W_F [0] EBI 260s -pdb_db W_F [0] pdb 260s -protein_db W_F [0] uniref50 260s -method_log W_F [0] no 260s -struc_to_use S [0] 260s -cache W_F [0] use 260s -print_cache FL [0] 0 260s -align_pdb_param_file W_F [0] no 260s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 260s -external_aligner S [0] NO 260s -msa_mode S [0] tree 260s -et_mode S [0] et 260s -master S [0] no 260s -blast_nseq D [0] 0 260s -lalign_n_top D [0] 10 260s -iterate D [0] 0 260s -trim D [0] 0 260s -split D [0] 0 260s -trimfile S [0] default 260s -split D [0] 0 260s -split_nseq_thres D [0] 0 260s -split_score_thres D [0] 0 260s -check_pdb_status D [0] 0 260s -clean_seq_name D [0] 0 260s -seq_to_keep S [0] 260s -dpa_master_aln S [0] 260s -dpa_maxnseq D [0] 0 260s -dpa_min_score1 D [0] 260s -dpa_min_score2 D [0] 260s -dpa_keep_tmpfile FL [0] 0 260s -dpa_debug D [0] 0 260s -multi_core S [0] templates_jobs_relax_msa_evaluate 260s -n_core D [0] 1 260s -thread D [0] 1 260s -max_n_proc D [0] 0 260s -lib_list S [0] 260s -prune_lib_mode S [0] 5 260s -tip S [0] none 260s -rna_lib S [0] 260s -no_warning D [0] 0 260s -run_local_script D [0] 0 260s -proxy S [0] unset 260s -email S [0] 260s -clean_overaln D [0] 0 260s -overaln_param S [0] 260s -overaln_mode S [0] 260s -overaln_model S [0] 260s -overaln_threshold D [0] 0 260s -overaln_target D [0] 0 260s -overaln_P1 D [0] 0 260s -overaln_P2 D [0] 0 260s -overaln_P3 D [0] 0 260s -overaln_P4 D [0] 0 260s -exon_boundaries S [0] 260s -display D [0] 100 260s 260s INPUT FILES 260s Input File (S) sample_rnaseq1.fasta Format fasta_seq 260s Input File (M) proba_pair 260s 260s Identify Master Sequences [no]: 260s 260s Master Sequences Identified 260s INPUT SEQUENCES: 5 SEQUENCES [RNA] 260s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 260s 260s Multi Core Mode: 1 processors: 260s 260s --- Process Method/Library/Aln Ssample_rnaseq1.fasta 260s xxx Retrieved Ssample_rnaseq1.fasta 260s --- Process Method/Library/Aln Mproba_pair 260s xxx Retrieved Mproba_pair 260s 260s All Methods Retrieved 260s 260s MANUAL PENALTIES: gapopen=0 gapext=0 260s 260s Library Total Size: [7026] 260s 260s Library Relaxation: Multi_proc [1] 260s 260s ! [Relax Library][TOT= 5][ 0 %] ! [Relax Library][TOT= 5][ 40 %] ! [Relax Library][TOT= 5][ 60 %] ! [Relax Library][TOT= 5][ 80 %] ! [Relax Library][TOT= 5][100 %] 260s 260s Relaxation Summary: [7026]--->[6316] 260s 260s 260s 260s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 260s 260s MAKE GUIDE TREE 260s [MODE=nj][DONE] 260s 260s PROGRESSIVE_ALIGNMENT [Tree Based] 260s Group 1: AC000104.1-17376_17496 260s Group 2: AC068303.10-12902_12788 260s Group 3: AC097725.2-33800_33915 260s Group 4: AL023594.2-7651_7766 260s Group 5: X15934.1-3_121 260s 260s #Single Thread 260s 260s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 122][PID:1518]#Single Thread 260s 260s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 120][PID:1518]#Single Thread 260s 260s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1518]#Single Thread 260s 260s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 129][PID:1518] 260s 260s 260s ! [Final Evaluation][TOT= 129][ 0 %] ! [Final Evaluation][TOT= 129][ 1 %] ! [Final Evaluation][TOT= 129][ 2 %] ! [Final Evaluation][TOT= 129][ 3 %] ! [Final Evaluation][TOT= 129][ 4 %] ! [Final Evaluation][TOT= 129][ 5 %] ! [Final Evaluation][TOT= 129][ 6 %] ! [Final Evaluation][TOT= 129][ 7 %] ! [Final Evaluation][TOT= 129][ 8 %] ! [Final Evaluation][TOT= 129][ 9 %] ! [Final Evaluation][TOT= 129][ 10 %] ! [Final Evaluation][TOT= 129][ 11 %] ! [Final Evaluation][TOT= 129][ 12 %] ! [Final Evaluation][TOT= 129][ 13 %] ! [Final Evaluation][TOT= 129][ 14 %] ! [Final Evaluation][TOT= 129][ 15 %] ! [Final Evaluation][TOT= 129][ 16 %] ! [Final Evaluation][TOT= 129][ 17 %] ! [Final Evaluation][TOT= 129][ 18 %] ! [Final Evaluation][TOT= 129][ 19 %] ! [Final Evaluation][TOT= 129][ 20 %] ! [Final Evaluation][TOT= 129][ 21 %] ! [Final Evaluation][TOT= 129][ 22 %] ! [Final Evaluation][TOT= 129][ 23 %] ! [Final Evaluation][TOT= 129][ 24 %] ! [Final Evaluation][TOT= 129][ 25 %] ! [Final Evaluation][TOT= 129][ 26 %] ! [Final Evaluation][TOT= 129][ 27 %] ! [Final Evaluation][TOT= 129][ 28 %] ! [Final Evaluation][TOT= 129][ 29 %] ! [Final Evaluation][TOT= 129][ 30 %] ! [Final Evaluation][TOT= 129][ 31 %] ! [Final Evaluation][TOT= 129][ 32 %] ! [Final Evaluation][TOT= 129][ 33 %] ! [Final Evaluation][TOT= 129][ 34 %] ! [Final Evaluation][TOT= 129][ 35 %] ! [Final Evaluation][TOT= 129][ 36 %] ! [Final Evaluation][TOT= 129][ 37 %] ! [Final Evaluation][TOT= 129][ 38 %] ! [Final Evaluation][TOT= 129][ 39 %] ! [Final Evaluation][TOT= 129][ 40 %] ! [Final Evaluation][TOT= 129][ 41 %] ! [Final Evaluation][TOT= 129][ 42 %] ! [Final Evaluation][TOT= 129][ 43 %] ! [Final Evaluation][TOT= 129][ 44 %] ! [Final Evaluation][TOT= 129][ 45 %] ! [Final Evaluation][TOT= 129][ 46 %] ! [Final Evaluation][TOT= 129][ 47 %] ! [Final Evaluation][TOT= 129][ 48 %] ! [Final Evaluation][TOT= 129][ 49 %] ! [Final Evaluation][TOT= 129][ 50 %] ! [Final Evaluation][TOT= 129][ 51 %] ! [Final Evaluation][TOT= 129][ 52 %] ! [Final Evaluation][TOT= 129][ 53 %] ! [Final Evaluation][TOT= 129][ 54 %] ! [Final Evaluation][TOT= 129][ 55 %] ! [Final Evaluation][TOT= 129][ 56 %] ! [Final Evaluation][TOT= 129][ 57 %] ! [Final Evaluation][TOT= 129][ 58 %] ! [Final Evaluation][TOT= 129][ 59 %] ! [Final Evaluation][TOT= 129][ 60 %] ! [Final Evaluation][TOT= 129][ 61 %] ! [Final Evaluation][TOT= 129][ 62 %] ! [Final Evaluation][TOT= 129][ 63 %] ! [Final Evaluation][TOT= 129][ 64 %] ! [Final Evaluation][TOT= 129][ 65 %] ! [Final Evaluation][TOT= 129][ 66 %] ! [Final Evaluation][TOT= 129][ 67 %] ! [Final Evaluation][TOT= 129][ 68 %] ! [Final Evaluation][TOT= 129][ 69 %] ! [Final Evaluation][TOT= 129][ 70 %] ! [Final Evaluation][TOT= 129][ 71 %] ! [Final Evaluation][TOT= 129][ 72 %] ! [Final Evaluation][TOT= 129][ 73 %] ! [Final Evaluation][TOT= 129][ 74 %] ! [Final Evaluation][TOT= 129][ 75 %] ! [Final Evaluation][TOT= 129][ 76 %] ! [Final Evaluation][TOT= 129][ 77 %] ! [Final Evaluation][TOT= 129][ 78 %] ! [Final Evaluation][TOT= 129][ 79 %] ! [Final Evaluation][TOT= 129][ 80 %] ! [Final Evaluation][TOT= 129][ 81 %] ! [Final Evaluation][TOT= 129][ 82 %] ! [Final Evaluation][TOT= 129][ 83 %] ! [Final Evaluation][TOT= 129][ 84 %] ! [Final Evaluation][TOT= 129][ 85 %] ! [Final Evaluation][TOT= 129][ 86 %] ! [Final Evaluation][TOT= 129][ 87 %] ! [Final Evaluation][TOT= 129][ 88 %] ! [Final Evaluation][TOT= 129][ 89 %] ! [Final Evaluation][TOT= 129][ 90 %] ! [Final Evaluation][TOT= 129][ 91 %] ! [Final Evaluation][TOT= 129][ 92 %] ! [Final Evaluation][TOT= 129][ 93 %] ! [Final Evaluation][TOT= 129][ 94 %] ! [Final Evaluation][TOT= 129][ 95 %] ! [Final Evaluation][TOT= 129][ 96 %] ! [Final Evaluation][TOT= 129][ 97 %] ! [Final Evaluation][TOT= 129][ 98 %] ! [Final Evaluation][TOT= 129][ 99 %] ! [Final Evaluation][TOT= 129][100 %] 260s 260s 260s 260s OUTPUT RESULTS 260s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 260s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 260s #### File Type= MSA Format= html Name= sample_rnaseq1.html 260s 260s # Command Line: t_coffee sample_rnaseq1.fasta [PROGRAM:T-COFFEE] 260s # T-COFFEE Memory Usage: Current= 389.466 Mb, Max= 405.465 Mb 260s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 260s # T-COFFEE is available from http://www.tcoffee.org 260s # Register on: https://groups.google.com/group/tcoffee/ 260s #Single Thread 260s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=55, Nseq=5, Len=129 260s 260s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG-----AUCAUGUAAAUCUUUCGCCUUUUAUU 260s AC097725.2-33800_33915 A-CUCUGGUUUCUCUUCAAU---UGUCGAAUAAAUCUUUCGCCUUUUACU 260s X15934.1-3_121 A-GCCGUGUG-AUGAUGACA---UAGCGAACUAUUCUUUCGCCUUUUACU 260s AC000104.1-17376_17496 A-GCCAUGUG-GUGAGCACA---UAGCGAACUAUUCUUUCGCCUUUUACU 260s AL023594.2-7651_7766 G-UCAAAGCA-CUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACC 260s * * * * * * * ******** 260s 260s AC068303.10-12902_12788 AAAGAUUUCCAUGGGGAGGAACA--GUUAUGAGUCUUUAUCCAAUUUCU- 260s AC097725.2-33800_33915 AAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAA-AAUAAUUUUUA 260s X15934.1-3_121 AAAGAAUACCGUGUCA-GCGUCACAAUUAGCGGCAUAC-GCUAGUUUUUG 260s AC000104.1-17376_17496 AAAGAAUACCGUGUGC-UCUCCACGCUAAGUGGCAUAC-GCCUAUUUUUG 260s AL023594.2-7651_7766 AGAAACAGCCGUUUGU-AAGGUGUGCUAAUUUGACUGU--AUAGUUUUUG 260s * * * ** * * * * * *** * 260s 260s AC068303.10-12902_12788 GAGG-CCUCGU-GUUU--CACCA--GGCU 260s AC097725.2-33800_33915 GUAG-UGCCCU-G--U--CGCAA--GACU 260s X15934.1-3_121 GAAGAGUUCUCAAUUU--UGAGG-GCUCU 260s AC000104.1-17376_17496 GAGG-GUUCCCACUUUACUGUGGGUCCCA 260s AL023594.2-7651_7766 UAA--UCUUUU-U-CU--UGAAA--CAUU 260s * 260s 260s 260s 260s 260s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 260s -full_log S [0] 260s -genepred_score S [0] nsd 260s -run_name S [0] 260s -mem_mode S [0] mem 260s -extend D [1] 1 260s -extend_mode S [1] matrix 260s -max_n_pair D [0] 10 260s -seq_name_for_quadruplet S [0] all 260s -compact S [0] default 260s -clean S [0] no 260s -do_self FL [0] 0 260s -do_normalise D [0] 1000 260s -template_file S [0] 260s -setenv S [0] 0 260s -export S [0] 0 260s -template_mode S [0] 260s -flip D [0] 0 260s -remove_template_file D [0] 0 260s -profile_template_file S [0] 260s -in S [1] Xblosum62mt 260s -seq S [1] sample_rnaseq1.fasta 260s -aln S [0] 260s -method_limits S [0] 260s -method S [0] 260s -lib S [0] 260s -profile S [0] 260s -profile1 S [0] 260s -profile2 S [0] 260s -pdb S [0] 260s -relax_lib D [0] 1 260s -filter_lib D [0] 0 260s -shrink_lib D [0] 0 260s -out_lib W_F [0] no 260s -out_lib_mode S [0] primary 260s -lib_only D [0] 0 260s -outseqweight W_F [0] no 260s -seq_source S [0] ANY 260s -cosmetic_penalty D [0] 0 260s -gapopen D [1] -25 260s -gapext D [1] -1 260s -fgapopen D [0] 0 260s -fgapext D [0] 0 260s -nomatch D [0] 0 260s -newtree W_F [0] default 260s -tree W_F [0] NO 260s -usetree R_F [0] 260s -tree_mode S [0] nj 260s -distance_matrix_mode S [1] ktup 260s -distance_matrix_sim_mode S [0] idmat_sim1 260s -quicktree FL [0] 0 260s -outfile W_F [0] default 260s -maximise FL [1] 1 260s -output S [0] aln html 260s -len D [0] 0 260s -infile R_F [0] 260s -matrix S [0] default 260s -tg_mode D [0] 1 260s -profile_mode S [0] cw_profile_profile 260s -profile_comparison S [0] profile 260s -dp_mode S [1] gotoh_pair_wise_lgp 260s -ktuple D [0] 1 260s -ndiag D [0] 0 260s -diag_threshold D [0] 0 260s -diag_mode D [0] 0 260s -sim_matrix S [0] vasiliky 260s -transform S [0] 260s -extend_seq FL [0] 0 260s -outorder S [0] input 260s -inorder S [0] aligned 260s -seqnos S [0] off 260s -case S [0] keep 260s -cpu D [0] 0 260s -ulimit D [0] -1 260s -maxnseq D [1] 10000 260s -maxlen D [0] -1 260s -sample_dp D [0] 0 260s -weight S [0] default 260s -seq_weight S [0] no 260s -align FL [1] 1 260s -mocca FL [0] 0 260s -domain FL [0] 0 260s -start D [0] 0 260s -len D [0] 0 260s -scale D [0] 0 260s -mocca_interactive FL [0] 0 260s -method_evaluate_mode S [0] default 260s -color_mode S [0] new 260s -aln_line_length D [0] 0 260s -evaluate_mode S [0] triplet 260s -get_type FL [0] 0 260s -clean_aln D [0] 0 260s -clean_threshold D [1] 1 260s -clean_iteration D [1] 1 260s -clean_evaluate_mode S [0] t_coffee_fast 260s -extend_matrix FL [0] 0 260s -prot_min_sim D [40] 40 260s -prot_max_sim D [90] 90 260s -prot_trim D [20] 20 260s -prot_min_cov D [40] 40 260s -pdb_type S [0] d 260s -pdb_min_sim D [35] 35 260s -pdb_max_sim D [100] 100 260s -pdb_min_cov D [50] 50 260s -pdb_blast_server W_F [0] EBI 260s -blast W_F [0] 260s -blast_server W_F [0] EBI 260s -pdb_db W_F [0] pdb 260s -protein_db W_F [0] uniref50 260s -method_log W_F [0] no 260s -struc_to_use S [0] 260s -cache W_F [0] use 260s -print_cache FL [0] 0 260s -align_pdb_param_file W_F [0] no 260s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 260s -external_aligner S [0] NO 260s -msa_mode S [0] tree 260s -et_mode S [0] et 260s -master S [0] no 260s -blast_nseq D [0] 0 260s -lalign_n_top D [0] 10 260s -iterate D [1] 0 260s -trim D [0] 0 260s -split D [0] 0 260s -trimfile S [0] default 260s -split D [0] 0 260s -split_nseq_thres D [0] 0 260s -split_score_thres D [0] 0 260s -check_pdb_status D [0] 0 260s -clean_seq_name D [0] 0 260s -seq_to_keep S [0] 260s -dpa_master_aln S [0] 260s -dpa_maxnseq D [1] 0 260s -dpa_min_score1 D [0] 260s -dpa_min_score2 D [0] 260s -dpa_keep_tmpfile FL [0] 0 260s -dpa_debug D [0] 0 260s -multi_core S [0] templates_jobs_relax_msa_evaluate 260s -n_core D [0] 1 260s -thread D [0] 1 260s -max_n_proc D [0] 0 260s -lib_list S [0] 260s -prune_lib_mode S [0] 5 260s -tip S [0] none 260s -rna_lib S [0] 260s -no_warning D [0] 0 260s -run_local_script D [0] 0 260s -proxy S [0] unset 260s -email S [0] 260s -clean_overaln D [0] 0 260s -overaln_param S [0] 260s -overaln_mode S [0] 260s -overaln_model S [0] 260s -overaln_threshold D [0] 0 260s -overaln_target D [0] 0 260s -overaln_P1 D [0] 0 260s -overaln_P2 D [0] 0 260s -overaln_P3 D [0] 0 260s -overaln_P4 D [0] 0 260s -exon_boundaries S [0] 260s -display D [0] 100 260s 260s INPUT FILES 260s Input File (X) blosum62mt 260s Input File (S) sample_rnaseq1.fasta Format fasta_seq 260s Input File (M) proba_pair 260s 260s Identify Master Sequences [no]: 260s 260s Master Sequences Identified 260s INPUT SEQUENCES: 5 SEQUENCES [RNA] 260s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 260s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 260s 260s blosum62mt [matrix] 260s 260s MANUAL PENALTIES: gapopen=-25 gapext=-1 260s 260s Library Total Size: [0] 260s 260s 260s 260s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 260s 260s MAKE GUIDE TREE 260s [MODE=nj][DONE] 260s 260s PROGRESSIVE_ALIGNMENT [Tree Based] 260s Group 1: AC000104.1-17376_17496 260s Group 2: AC068303.10-12902_12788 260s Group 3: AC097725.2-33800_33915 260s Group 4: AL023594.2-7651_7766 260s Group 5: X15934.1-3_121 260s 260s 260s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1557] 260s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1557] 260s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1557] 260s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1557] 260s 260s 260s 260s OUTPUT RESULTS 260s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 260s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 261s #### File Type= MSA Format= html Name= sample_rnaseq1.html 261s 261s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln [PROGRAM:T-COFFEE] 261s # T-COFFEE Memory Usage: Current= 406.848 Mb, Max= 408.019 Mb 261s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 261s # T-COFFEE is available from http://www.tcoffee.org 261s # Register on: https://groups.google.com/group/tcoffee/ 261s #Single Thread 261s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 261s 261s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 261s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 261s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 261s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 261s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 261s * * * * ** **** ******** 261s 261s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 261s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 261s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 261s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 261s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 261s * * * ** * * * * * *** 261s 261s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 261s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 261s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 261s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 261s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 261s * * * 261s 261s 261s 261s 261s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 261s -full_log S [0] 261s -genepred_score S [0] nsd 261s -run_name S [0] 261s -mem_mode S [0] mem 261s -extend D [1] 1 261s -extend_mode S [1] matrix 261s -max_n_pair D [0] 10 261s -seq_name_for_quadruplet S [0] all 261s -compact S [0] default 261s -clean S [0] no 261s -do_self FL [0] 0 261s -do_normalise D [0] 1000 261s -template_file S [0] 261s -setenv S [0] 0 261s -export S [0] 0 261s -template_mode S [0] 261s -flip D [0] 0 261s -remove_template_file D [0] 0 261s -profile_template_file S [0] 261s -in S [1] Xblosum62mt 261s -seq S [1] sample_rnaseq1.fasta 261s -aln S [0] 261s -method_limits S [0] 261s -method S [0] 261s -lib S [0] 261s -profile S [0] 261s -profile1 S [0] 261s -profile2 S [0] 261s -pdb S [0] 261s -relax_lib D [0] 1 261s -filter_lib D [0] 0 261s -shrink_lib D [0] 0 261s -out_lib W_F [0] no 261s -out_lib_mode S [0] primary 261s -lib_only D [0] 0 261s -outseqweight W_F [0] no 261s -seq_source S [0] ANY 261s -cosmetic_penalty D [0] 0 261s -gapopen D [1] -25 261s -gapext D [1] -1 261s -fgapopen D [0] 0 261s -fgapext D [0] 0 261s -nomatch D [0] 0 261s -newtree W_F [0] default 261s -tree W_F [0] NO 261s -usetree R_F [0] 261s -tree_mode S [0] nj 261s -distance_matrix_mode S [1] ktup 261s -distance_matrix_sim_mode S [0] idmat_sim1 261s -quicktree FL [0] 0 261s -outfile W_F [0] default 261s -maximise FL [1] 1 261s -output S [0] aln html 261s -len D [0] 0 261s -infile R_F [0] 261s -matrix S [0] default 261s -tg_mode D [0] 1 261s -profile_mode S [0] cw_profile_profile 261s -profile_comparison S [0] profile 261s -dp_mode S [1] gotoh_pair_wise_lgp 261s -ktuple D [0] 1 261s -ndiag D [1] 10 261s -diag_threshold D [0] 0 261s -diag_mode D [0] 0 261s -sim_matrix S [0] vasiliky 261s -transform S [0] 261s -extend_seq FL [0] 0 261s -outorder S [0] input 261s -inorder S [0] aligned 261s -seqnos S [0] off 261s -case S [0] keep 261s -cpu D [0] 0 261s -ulimit D [0] -1 261s -maxnseq D [1] 10000 261s -maxlen D [0] -1 261s -sample_dp D [0] 0 261s -weight S [0] default 261s -seq_weight S [0] no 261s -align FL [1] 1 261s -mocca FL [0] 0 261s -domain FL [0] 0 261s -start D [0] 0 261s -len D [0] 0 261s -scale D [0] 0 261s -mocca_interactive FL [0] 0 261s -method_evaluate_mode S [0] default 261s -color_mode S [0] new 261s -aln_line_length D [0] 0 261s -evaluate_mode S [0] triplet 261s -get_type FL [0] 0 261s -clean_aln D [0] 0 261s -clean_threshold D [1] 1 261s -clean_iteration D [1] 1 261s -clean_evaluate_mode S [0] t_coffee_fast 261s -extend_matrix FL [0] 0 261s -prot_min_sim D [40] 40 261s -prot_max_sim D [90] 90 261s -prot_trim D [20] 20 261s -prot_min_cov D [40] 40 261s -pdb_type S [0] d 261s -pdb_min_sim D [35] 35 261s -pdb_max_sim D [100] 100 261s -pdb_min_cov D [50] 50 261s -pdb_blast_server W_F [0] EBI 261s -blast W_F [0] 261s -blast_server W_F [0] EBI 261s -pdb_db W_F [0] pdb 261s -protein_db W_F [0] uniref50 261s -method_log W_F [0] no 261s -struc_to_use S [0] 261s -cache W_F [0] use 261s -print_cache FL [0] 0 261s -align_pdb_param_file W_F [0] no 261s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 261s -external_aligner S [0] NO 261s -msa_mode S [0] tree 261s -et_mode S [0] et 261s -master S [0] no 261s -blast_nseq D [0] 0 261s -lalign_n_top D [0] 10 261s -iterate D [1] 0 261s -trim D [0] 0 261s -split D [0] 0 261s -trimfile S [0] default 261s -split D [0] 0 261s -split_nseq_thres D [0] 0 261s -split_score_thres D [0] 0 261s -check_pdb_status D [0] 0 261s -clean_seq_name D [0] 0 261s -seq_to_keep S [0] 261s -dpa_master_aln S [0] 261s -dpa_maxnseq D [1] 0 261s -dpa_min_score1 D [0] 261s -dpa_min_score2 D [0] 261s -dpa_keep_tmpfile FL [0] 0 261s -dpa_debug D [0] 0 261s -multi_core S [0] templates_jobs_relax_msa_evaluate 261s -n_core D [0] 1 261s -thread D [0] 1 261s -max_n_proc D [0] 0 261s -lib_list S [0] 261s -prune_lib_mode S [0] 5 261s -tip S [0] none 261s -rna_lib S [0] 261s -no_warning D [0] 0 261s -run_local_script D [0] 0 261s -proxy S [0] unset 261s -email S [0] 261s -clean_overaln D [0] 0 261s -overaln_param S [0] 261s -overaln_mode S [0] 261s -overaln_model S [0] 261s -overaln_threshold D [0] 0 261s -overaln_target D [0] 0 261s -overaln_P1 D [0] 0 261s -overaln_P2 D [0] 0 261s -overaln_P3 D [0] 0 261s -overaln_P4 D [0] 0 261s -exon_boundaries S [0] 261s -display D [0] 100 261s 261s INPUT FILES 261s Input File (X) blosum62mt 261s Input File (S) sample_rnaseq1.fasta Format fasta_seq 261s Input File (M) proba_pair 261s 261s Identify Master Sequences [no]: 261s 261s Master Sequences Identified 261s INPUT SEQUENCES: 5 SEQUENCES [RNA] 261s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 261s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 261s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 261s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 261s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 261s 261s blosum62mt [matrix] 261s 261s MANUAL PENALTIES: gapopen=-25 gapext=-1 261s 261s Library Total Size: [0] 261s 261s 261s 261s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 261s 261s MAKE GUIDE TREE 261s [MODE=nj][DONE] 261s 261s PROGRESSIVE_ALIGNMENT [Tree Based] 261s Group 1: AC000104.1-17376_17496 261s Group 2: AC068303.10-12902_12788 261s Group 3: AC097725.2-33800_33915 261s Group 4: AL023594.2-7651_7766 261s Group 5: X15934.1-3_121 261s 261s 261s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1600] 261s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1600] 261s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1600] 261s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1600] 261s 261s 261s 261s OUTPUT RESULTS 261s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 261s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 261s #### File Type= MSA Format= html Name= sample_rnaseq1.html 261s 261s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln -ndiag 10 [PROGRAM:T-COFFEE] 261s # T-COFFEE Memory Usage: Current= 406.849 Mb, Max= 408.021 Mb 261s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 261s # T-COFFEE is available from http://www.tcoffee.org 261s # Register on: https://groups.google.com/group/tcoffee/ 261s #Single Thread 261s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 261s 261s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 261s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 261s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 261s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 261s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 261s * * * * ** **** ******** 261s 261s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 261s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 261s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 261s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 261s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 261s * * * ** * * * * * *** 261s 261s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 261s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 261s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 261s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 261s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 261s * * * 261s 261s 261s 261s 261s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 261s -full_log S [0] 261s -genepred_score S [0] nsd 261s -run_name S [0] 261s -mem_mode S [0] mem 261s -extend D [1] 1 261s -extend_mode S [0] very_fast_triplet 261s -max_n_pair D [0] 10 261s -seq_name_for_quadruplet S [0] all 261s -compact S [0] default 261s -clean S [0] no 261s -do_self FL [0] 0 261s -do_normalise D [0] 1000 261s -template_file S [0] 261s -setenv S [0] 0 261s -export S [0] 0 261s -template_mode S [0] 261s -flip D [0] 0 261s -remove_template_file D [0] 0 261s -profile_template_file S [0] 261s -in S [0] 261s -seq S [1] proteases_small.fasta 261s -aln S [1] g0.aln g5.aln g10.aln g15.aln 261s -method_limits S [0] 261s -method S [0] 261s -lib S [0] 261s -profile S [0] 261s -profile1 S [0] 261s -profile2 S [0] 261s -pdb S [0] 261s -relax_lib D [0] 1 261s -filter_lib D [0] 0 261s -shrink_lib D [0] 0 261s -out_lib W_F [0] no 261s -out_lib_mode S [0] primary 261s -lib_only D [0] 0 261s -outseqweight W_F [0] no 261s -seq_source S [0] ANY 261s -cosmetic_penalty D [0] 0 261s -gapopen D [0] 0 261s -gapext D [0] 0 261s -fgapopen D [0] 0 261s -fgapext D [0] 0 261s -nomatch D [0] 0 261s -newtree W_F [0] default 261s -tree W_F [0] NO 261s -usetree R_F [0] 261s -tree_mode S [0] nj 261s -distance_matrix_mode S [0] ktup 261s -distance_matrix_sim_mode S [0] idmat_sim1 261s -quicktree FL [0] 0 261s -outfile W_F [0] default 261s -maximise FL [1] 1 261s -output S [1] clustalw html 261s -len D [0] 0 261s -infile R_F [0] 261s -matrix S [0] default 261s -tg_mode D [0] 1 261s -profile_mode S [0] cw_profile_profile 261s -profile_comparison S [0] profile 261s -dp_mode S [0] linked_pair_wise 261s -ktuple D [0] 1 261s -ndiag D [0] 0 261s -diag_threshold D [0] 0 261s -diag_mode D [0] 0 261s -sim_matrix S [0] vasiliky 261s -transform S [0] 261s -extend_seq FL [0] 0 261s -outorder S [0] input 261s -inorder S [0] aligned 261s -seqnos S [0] off 261s -case S [0] keep 261s -cpu D [0] 0 261s -ulimit D [0] -1 261s -maxnseq D [0] -1 261s -maxlen D [0] -1 261s -sample_dp D [0] 0 261s -weight S [0] default 261s -seq_weight S [0] no 261s -align FL [1] 1 261s -mocca FL [0] 0 261s -domain FL [0] 0 261s -start D [0] 0 261s -len D [0] 0 261s -scale D [0] 0 261s -mocca_interactive FL [0] 0 261s -method_evaluate_mode S [0] default 261s -color_mode S [0] new 261s -aln_line_length D [0] 0 261s -evaluate_mode S [0] triplet 261s -get_type FL [0] 0 261s -clean_aln D [0] 0 261s -clean_threshold D [1] 1 261s -clean_iteration D [1] 1 261s -clean_evaluate_mode S [0] t_coffee_fast 261s -extend_matrix FL [0] 0 261s -prot_min_sim D [40] 40 261s -prot_max_sim D [90] 90 261s -prot_trim D [20] 20 261s -prot_min_cov D [40] 40 261s -pdb_type S [0] d 261s -pdb_min_sim D [35] 35 261s -pdb_max_sim D [100] 100 261s -pdb_min_cov D [50] 50 261s -pdb_blast_server W_F [0] EBI 261s -blast W_F [0] 261s -blast_server W_F [0] EBI 261s -pdb_db W_F [0] pdb 261s -protein_db W_F [0] uniref50 261s -method_log W_F [0] no 261s -struc_to_use S [0] 261s -cache W_F [0] use 261s -print_cache FL [0] 0 261s -align_pdb_param_file W_F [0] no 261s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 261s -external_aligner S [0] NO 261s -msa_mode S [0] tree 261s -et_mode S [0] et 261s -master S [0] no 261s -blast_nseq D [0] 0 261s -lalign_n_top D [0] 10 261s -iterate D [0] 0 261s -trim D [0] 0 261s -split D [0] 0 261s -trimfile S [0] default 261s -split D [0] 0 261s -split_nseq_thres D [0] 0 261s -split_score_thres D [0] 0 261s -check_pdb_status D [0] 0 261s -clean_seq_name D [0] 0 261s -seq_to_keep S [0] 261s -dpa_master_aln S [0] 261s -dpa_maxnseq D [0] 0 261s -dpa_min_score1 D [0] 261s -dpa_min_score2 D [0] 261s -dpa_keep_tmpfile FL [0] 0 261s -dpa_debug D [0] 0 261s -multi_core S [0] templates_jobs_relax_msa_evaluate 261s -n_core D [0] 1 261s -thread D [0] 1 261s -max_n_proc D [0] 0 261s -lib_list S [0] 261s -prune_lib_mode S [0] 5 261s -tip S [0] none 261s -rna_lib S [0] 261s -no_warning D [0] 0 261s -run_local_script D [0] 0 261s -proxy S [0] unset 261s -email S [0] 261s -clean_overaln D [0] 0 261s -overaln_param S [0] 261s -overaln_mode S [0] 261s -overaln_model S [0] 261s -overaln_threshold D [0] 0 261s -overaln_target D [0] 0 261s -overaln_P1 D [0] 0 261s -overaln_P2 D [0] 0 261s -overaln_P3 D [0] 0 261s -overaln_P4 D [0] 0 261s -exon_boundaries S [0] 261s -display D [0] 100 261s 261s INPUT FILES 261s Input File (S) proteases_small.fasta Format fasta_seq 261s Input File (A) g0.aln Format clustal_aln 261s Input File (A) g5.aln Format clustal_aln 261s Input File (A) g10.aln Format clustal_aln 261s Input File (A) g15.aln Format clustal_aln 262s 262s Identify Master Sequences [no]: 262s 262s Master Sequences Identified 262s INPUT SEQUENCES: 19 SEQUENCES [PROTEIN] 262s Input File proteases_small.fasta Seq sp|O35205|GRAK_MOUSE Length 263 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P00757|KLKB4_MOUSE Length 256 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P00773|ELA1_RAT Length 266 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P03953|CFAD_MOUSE Length 259 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P07338|CTRB1_RAT Length 263 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P08246|ELNE_HUMAN Length 267 type PROTEIN Struct Unchecked 262s Input File proteases_small.fasta Seq sp|P08884|GRAE_MOUSE Length 248 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P20160|CAP7_HUMAN Length 251 type PROTEIN Struct Unchecked 262s Input File proteases_small.fasta Seq sp|P21844|MCPT5_MOUSE Length 247 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P29786|TRY3_AEDAE Length 254 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P35037|TRY3_ANOGA Length 275 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|P80015|CAP7_PIG Length 219 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|Q00871|CTRB1_PENVA Length 271 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|Q03238|GRAM_RAT Length 258 type PROTEIN Struct Unchecked 262s Input File proteases_small.fasta Seq sp|Q06606|GRZ2_RAT Length 248 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|Q6H321|KLK2_HORSE Length 261 type PROTEIN Struct Unchecked 262s Input File proteases_small.fasta Seq sp|Q7YRZ7|GRAA_BOVIN Length 258 type PROTEIN Struct Unchecked 262s Input File g0.aln Seq sp|Q91VE3|KLK7_MOUSE Length 249 type PROTEIN Struct Unchecked 262s Input File proteases_small.fasta Seq sp|Q9Y5K2|KLK4_HUMAN Length 254 type PROTEIN Struct Unchecked 262s 262s Multi Core Mode: 1 processors: 262s 262s --- Process Method/Library/Aln Sproteases_small.fasta 262s xxx Retrieved Sproteases_small.fasta 262s --- Process Method/Library/Aln Ag0.aln 262s xxx Retrieved Ag0.aln 262s --- Process Method/Library/Aln Ag5.aln 262s xxx Retrieved Ag5.aln 262s --- Process Method/Library/Aln Ag10.aln 262s xxx Retrieved Ag10.aln 262s --- Process Method/Library/Aln Ag15.aln 262s xxx Retrieved Ag15.aln 262s 262s All Methods Retrieved 262s 262s MANUAL PENALTIES: gapopen=0 gapext=0 262s 262s Library Total Size: [12058] 262s 262s Library Relaxation: Multi_proc [1] 262s 262s ! [Relax Library][TOT= 19][ 0 %] ! [Relax Library][TOT= 19][ 10 %] ! [Relax Library][TOT= 19][ 15 %] ! [Relax Library][TOT= 19][ 21 %] ! [Relax Library][TOT= 19][ 26 %] ! [Relax Library][TOT= 19][ 31 %] ! [Relax Library][TOT= 19][ 36 %] ! [Relax Library][TOT= 19][ 42 %] ! [Relax Library][TOT= 19][ 47 %] ! [Relax Library][TOT= 19][ 52 %] ! [Relax Library][TOT= 19][ 57 %] ! [Relax Library][TOT= 19][ 63 %] ! [Relax Library][TOT= 19][ 68 %] ! [Relax Library][TOT= 19][ 73 %] ! [Relax Library][TOT= 19][ 78 %] ! [Relax Library][TOT= 19][ 84 %] ! [Relax Library][TOT= 19][ 89 %] ! [Relax Library][TOT= 19][ 94 %] ! [Relax Library][TOT= 19][100 %] 262s 262s Relaxation Summary: [12058]--->[12058] 262s 262s 262s 262s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 262s 262s MAKE GUIDE TREE 262s [MODE=nj][DONE] 262s 262s PROGRESSIVE_ALIGNMENT [Tree Based] 262s Group 1: sp|O35205|GRAK_MOUSE 262s Group 2: sp|P00757|KLKB4_MOUSE 262s Group 3: sp|P00773|ELA1_RAT 262s Group 4: sp|P03953|CFAD_MOUSE 262s Group 5: sp|P07338|CTRB1_RAT 262s Group 6: sp|P08246|ELNE_HUMAN 262s Group 7: sp|P08884|GRAE_MOUSE 262s Group 8: sp|P20160|CAP7_HUMAN 262s Group 9: sp|P21844|MCPT5_MOUSE 262s Group 10: sp|P29786|TRY3_AEDAE 262s Group 11: sp|P35037|TRY3_ANOGA 262s Group 12: sp|P80015|CAP7_PIG 262s Group 13: sp|Q00871|CTRB1_PENVA 262s Group 14: sp|Q03238|GRAM_RAT 262s Group 15: sp|Q06606|GRZ2_RAT 262s Group 16: sp|Q6H321|KLK2_HORSE 262s Group 17: sp|Q7YRZ7|GRAA_BOVIN 262s Group 18: sp|Q91VE3|KLK7_MOUSE 262s Group 19: sp|Q9Y5K2|KLK4_HUMAN 262s 262s #Single Thread 262s 262s Group 20: [Group 16 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 262][PID:1643]#Single Thread 262s 262s Group 21: [Group 19 ( 1 seq)] with [Group 18 ( 1 seq)]-->[Len= 258][PID:1643]#Single Thread 262s 262s Group 22: [Group 21 ( 2 seq)] with [Group 20 ( 2 seq)]-->[Len= 272][PID:1643]#Single Thread 262s 262s Group 23: [Group 4 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 268][PID:1643]#Single Thread 262s 262s Group 24: [Group 9 ( 1 seq)] with [Group 3 ( 1 seq)]-->[Len= 270][PID:1643]#Single Thread 262s 262s Group 25: [Group 24 ( 2 seq)] with [Group 23 ( 2 seq)]-->[Len= 285][PID:1643]#Single Thread 262s 262s Group 26: [Group 15 ( 1 seq)] with [Group 7 ( 1 seq)]-->[Len= 251][PID:1643]#Single Thread 262s 262s Group 27: [Group 14 ( 1 seq)] with [Group 26 ( 2 seq)]-->[Len= 268][PID:1643]#Single Thread 262s 262s Group 28: [Group 27 ( 3 seq)] with [Group 25 ( 4 seq)]-->[Len= 291][PID:1643]#Single Thread 262s #Single Thread 262s 262s Group 29: [Group 17 ( 1 seq)] with [Group 28 ( 7 seq)]-->[Len= 295][PID:1643] 262s Group 30: [Group 12 ( 1 seq)] with [Group 8 ( 1 seq)]-->[Len= 252][PID:1643]#Single Thread 262s 262s Group 31: [Group 30 ( 2 seq)] with [Group 6 ( 1 seq)]-->[Len= 272][PID:1643]#Single Thread 262s 262s Group 32: [Group 13 ( 1 seq)] with [Group 31 ( 3 seq)]-->[Len= 300][PID:1643]#Single Thread 262s 262s Group 33: [Group 32 ( 4 seq)] with [Group 29 ( 8 seq)]-->[Len= 329][PID:1643]#Single Thread 262s 262s Group 34: [Group 33 ( 12 seq)] with [Group 22 ( 4 seq)]-->[Len= 343][PID:1643]#Single Thread 262s 262s Group 35: [Group 11 ( 1 seq)] with [Group 10 ( 1 seq)]-->[Len= 275][PID:1643]#Single Thread 262s 262s Group 36: [Group 35 ( 2 seq)] with [Group 5 ( 1 seq)]-->[Len= 286][PID:1643]#Single Thread 262s 262s Group 37: [Group 36 ( 3 seq)] with [Group 34 ( 16 seq)]-->[Len= 351][PID:1643] 262s 262s 262s ! [Final Evaluation][TOT= 351][ 0 %] ! [Final Evaluation][TOT= 351][ 1 %] ! [Final Evaluation][TOT= 351][ 2 %] ! [Final Evaluation][TOT= 351][ 3 %] ! [Final Evaluation][TOT= 351][ 4 %] ! [Final Evaluation][TOT= 351][ 5 %] ! [Final Evaluation][TOT= 351][ 6 %] ! [Final Evaluation][TOT= 351][ 7 %] ! [Final Evaluation][TOT= 351][ 8 %] ! [Final Evaluation][TOT= 351][ 9 %] ! [Final Evaluation][TOT= 351][ 10 %] ! [Final Evaluation][TOT= 351][ 11 %] ! [Final Evaluation][TOT= 351][ 12 %] ! [Final Evaluation][TOT= 351][ 13 %] ! [Final Evaluation][TOT= 351][ 14 %] ! [Final Evaluation][TOT= 351][ 15 %] ! [Final Evaluation][TOT= 351][ 16 %] ! [Final Evaluation][TOT= 351][ 17 %] ! [Final Evaluation][TOT= 351][ 18 %] ! [Final Evaluation][TOT= 351][ 19 %] ! [Final Evaluation][TOT= 351][ 20 %] ! [Final Evaluation][TOT= 351][ 21 %] ! [Final Evaluation][TOT= 351][ 22 %] ! [Final Evaluation][TOT= 351][ 23 %] ! [Final Evaluation][TOT= 351][ 24 %] ! [Final Evaluation][TOT= 351][ 25 %] ! [Final Evaluation][TOT= 351][ 26 %] ! [Final Evaluation][TOT= 351][ 27 %] ! [Final Evaluation][TOT= 351][ 28 %] ! [Final Evaluation][TOT= 351][ 29 %] ! [Final Evaluation][TOT= 351][ 30 %] ! [Final Evaluation][TOT= 351][ 31 %] ! [Final Evaluation][TOT= 351][ 32 %] ! [Final Evaluation][TOT= 351][ 33 %] ! [Final Evaluation][TOT= 351][ 34 %] ! [Final Evaluation][TOT= 351][ 35 %] ! [Final Evaluation][TOT= 351][ 36 %] ! [Final Evaluation][TOT= 351][ 37 %] ! [Final Evaluation][TOT= 351][ 38 %] ! [Final Evaluation][TOT= 351][ 39 %] ! [Final Evaluation][TOT= 351][ 40 %] ! [Final Evaluation][TOT= 351][ 41 %] ! [Final Evaluation][TOT= 351][ 42 %] ! [Final Evaluation][TOT= 351][ 43 %] ! [Final Evaluation][TOT= 351][ 44 %] ! [Final Evaluation][TOT= 351][ 45 %] ! [Final Evaluation][TOT= 351][ 46 %] ! [Final Evaluation][TOT= 351][ 47 %] ! [Final Evaluation][TOT= 351][ 48 %] ! [Final Evaluation][TOT= 351][ 49 %] ! [Final Evaluation][TOT= 351][ 50 %] ! [Final Evaluation][TOT= 351][ 51 %] ! [Final Evaluation][TOT= 351][ 52 %] ! [Final Evaluation][TOT= 351][ 53 %] ! [Final Evaluation][TOT= 351][ 54 %] ! [Final Evaluation][TOT= 351][ 55 %] ! [Final Evaluation][TOT= 351][ 56 %] ! [Final Evaluation][TOT= 351][ 57 %] ! [Final Evaluation][TOT= 351][ 58 %] ! [Final Evaluation][TOT= 351][ 59 %] ! [Final Evaluation][TOT= 351][ 60 %] ! [Final Evaluation][TOT= 351][ 61 %] ! [Final Evaluation][TOT= 351][ 62 %] ! [Final Evaluation][TOT= 351][ 63 %] ! [Final Evaluation][TOT= 351][ 64 %] ! [Final Evaluation][TOT= 351][ 65 %] ! [Final Evaluation][TOT= 351][ 66 %] ! [Final Evaluation][TOT= 351][ 67 %] ! [Final Evaluation][TOT= 351][ 68 %] ! [Final Evaluation][TOT= 351][ 69 %] ! [Final Evaluation][TOT= 351][ 70 %] ! [Final Evaluation][TOT= 351][ 71 %] ! [Final Evaluation][TOT= 351][ 72 %] ! [Final Evaluation][TOT= 351][ 73 %] ! [Final Evaluation][TOT= 351][ 74 %] ! [Final Evaluation][TOT= 351][ 75 %] ! [Final Evaluation][TOT= 351][ 76 %] ! [Final Evaluation][TOT= 351][ 77 %] ! [Final Evaluation][TOT= 351][ 78 %] ! [Final Evaluation][TOT= 351][ 79 %] ! [Final Evaluation][TOT= 351][ 80 %] ! [Final Evaluation][TOT= 351][ 81 %] ! [Final Evaluation][TOT= 351][ 82 %] ! [Final Evaluation][TOT= 351][ 83 %] ! [Final Evaluation][TOT= 351][ 84 %] ! [Final Evaluation][TOT= 351][ 85 %] ! [Final Evaluation][TOT= 351][ 86 %] ! [Final Evaluation][TOT= 351][ 87 %] ! [Final Evaluation][TOT= 351][ 88 %] ! [Final Evaluation][TOT= 351][ 89 %] ! [Final Evaluation][TOT= 351][ 90 %] ! [Final Evaluation][TOT= 351][ 91 %] ! [Final Evaluation][TOT= 351][ 92 %] ! [Final Evaluation][TOT= 351][ 93 %] ! [Final Evaluation][TOT= 351][ 94 %] ! [Final Evaluation][TOT= 351][ 95 %] ! [Final Evaluation][TOT= 351][ 96 %] ! [Final Evaluation][TOT= 351][ 97 %] ! [Final Evaluation][TOT= 351][ 98 %] ! [Final Evaluation][TOT= 351][ 99 %] ! [Final Evaluation][TOT= 351][100 %] 262s 262s #Single Thread 262s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.01 sec, SCORE=74, Nseq=19, Len=351 262s 262s sp|Q06606|GRZ2_RAT M----------F-LFLFFLVAI-----LPV--N-------TE-GG----- 262s sp|P08884|GRAE_MOUSE M----------P-PVLILLTLL-----LPL--G-------AG-AE----- 262s sp|P21844|MCPT5_MOUSE MH---------L-LTLHLLLLL-----LGS--S-------TK-A------ 262s sp|O35205|GRAK_MOUSE MR---------F-SSWALVSLV-----AGVY-M-------SS-EC----F 262s sp|Q9Y5K2|KLK4_HUMAN MATAGNPW-G-W-FLGY-LILG-----VAG--S-------LV-S------ 262s sp|Q7YRZ7|GRAA_BOVIN MN-IPF---PFSFPPAICLLLI-----PGV--F-------PV-S------ 262s sp|P29786|TRY3_AEDAE M---N--Q--FL-FVSFCALLD-----SA-------K-V-SA-AT--L-S 262s sp|P35037|TRY3_ANOGA MI-SN--KIAIL-LAVLVVAVACAQARVA----QQHR-SVQALPR--FLP 262s sp|P03953|CFAD_MOUSE MH-S-----S-V-YFVALVILG-----AAVC-A--------A-Q-----P 262s sp|P20160|CAP7_HUMAN ----MTRL-T-V-LALLAGLLA-----SS-R---------AG-SS----P 262s sp|P80015|CAP7_PIG -------------------------------------------------- 262s sp|P08246|ELNE_HUMAN MT-LGRRL-A-C-L-FLACVLP-----AL-L---------LG-GT----A 262s sp|Q00871|CTRB1_PENVA ----MIGK-L-S-LLLVCVAVA-----SGNPAAG--KPWHWKSPKPLVDP 262s sp|P07338|CTRB1_RAT M------A--FL-WLVSCFALV-----GA-------T-FGCGVPT--IQP 262s sp|P00773|ELA1_RAT ML---------R-FLVFASLVL-----YGH--S-------TQ-DF----P 262s sp|Q91VE3|KLK7_MOUSE M-----GV---W-LLSL-ITVL-----LSL--A-------LETA------ 262s sp|Q6H321|KLK2_HORSE M----------W-FLVLCLDLS-----LGE--T-------GA-L-----P 262s sp|P00757|KLKB4_MOUSE M----------W-FLILFLALS-----LGG--I-------DA-A-----P 262s sp|Q03238|GRAM_RAT L-------------LLL-LA-L-----KTL--W-------AV-GN----R 262s 262s 262s sp|Q06606|GRZ2_RAT --------EIIWGTESKPHSRPYM-AFIKFYDSNSEPHHCGGFLVAKDIV 262s sp|P08884|GRAE_MOUSE --------EIIGGHVVKPHSRPYM-AFVKSVDIEGNRRYCGGFLVQDDFV 262s sp|P21844|MCPT5_MOUSE -------GEIIGGTECIPHSRPYM-AYLEIVTSENYLSACSGFLIRRNFV 262s sp|O35205|GRAK_MOUSE ---H---TEIIGGREVQPHSRPFM-ASIQ-YRSK---HICGGVLIHPQWV 262s sp|Q9Y5K2|KLK4_HUMAN G-SC---SQIINGEDCSPHSQPWQAALVM--ENE---LFCSGVLVHPQWV 262s sp|Q7YRZ7|GRAA_BOVIN ---C---EGIIGGNEVAPHTRRYM-ALIK-G-L----KLCAGALIKENWV 262s sp|P29786|TRY3_AEDAE S------GRIVGGFQIDIAEVPHQ-VSLQ-RSGR---HFCGGSIISPRWV 262s sp|P35037|TRY3_ANOGA RPKYDVGHRIVGGFEIDVSETPYQ-VSLQ-YFNS---HRCGGSVLNSKWI 262s sp|P03953|CFAD_MOUSE ---R---GRILGGQEAAAHARPYM-ASVQ-VNGT---HVCGGTLLDEQWV 262s sp|P20160|CAP7_HUMAN L-----L-DIVGGRKARPRQFPFL-ASIQ-NQGR---HFCGGALIHARFV 262s sp|P80015|CAP7_PIG ---------IVGGRRAQPQEFPFL-ASIQ-KQGR---PFCAGALVHPRFV 262s sp|P08246|ELNE_HUMAN L-----ASEIVGGRRARPHAWPFM-VSLQ-LRGG---HFCGATLIAPNFV 262s sp|Q00871|CTRB1_PENVA RIHVNATPRIVGGVEATPHSWPHQ-AALF-IDDM---YFCGGSLISSEWV 262s sp|P07338|CTRB1_RAT VL--TGLSRIVNGEDAIPGSWPWQ-VSL--QDKTG-FHFCGGSLISEDWV 262s sp|P00773|ELA1_RAT E--TN--ARVVGGAEARRNSWPSQ-ISLQYLSGGSWYHTCGGTLIRRNWV 262s sp|Q91VE3|KLK7_MOUSE G-QG---ERIIDGYKCKEGSHPWQVALLK--GNQ---LHCGGVLVDKYWV 262s sp|Q6H321|KLK2_HORSE P-IQ---SRIIGGWECEKHSKPWQVAVYH--QGH---FQCGGVLVHPQWV 262s sp|P00757|KLKB4_MOUSE P-VQ---SQV----DCE-NSQPWHVAVYR--FNK---YQCGGVLLDRNWV 262s sp|Q03238|GRAM_RAT ---FE--AQIIGGREAVPHSRPYM-VSLQ-NTK-S--HMCGGVLVHQKWV 262s : *.. :: : 262s 262s sp|Q06606|GRZ2_RAT MTAAHCN----GR---NIKVTLGAHNIK-KQE-NTQVISVVKAKPHENYD 262s sp|P08884|GRAE_MOUSE LTAAHCR----NR---TMTVTLGAHNIKAKEE-TQQIIPVAKAIPHPDYN 262s sp|P21844|MCPT5_MOUSE LTAAHC--A-G-R---SITVLLGAHNKTSKED-TWQKLEVEKQFLHPKYD 262s sp|O35205|GRAK_MOUSE LTAAHCYSW-FPR-GHSPTVVLGAHSLSKNEP-MKQTFEIKKFIPFSRLQ 262s sp|Q9Y5K2|KLK4_HUMAN LSAAHCF---Q-N---SYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYN 262s sp|Q7YRZ7|GRAA_BOVIN LTAAHCD---L-K-G-NPQVILGAHSTSHKEK-LDQVFSIKKAIPYPCFD 262s sp|P29786|TRY3_AEDAE LTRAHCTTN-T-DPA-AYTIRAGSTDRTNGGI-IV---KVKSVIPHPQYN 262s sp|P35037|TRY3_ANOGA LTAAHCTVN-L-QPS-SLAVRLGSSRHASGGT-VV---RVARVLEHPNYD 262s sp|P03953|CFAD_MOUSE LSAAHCMDG-VTD-DDSVQVLLGAHSLSAPEP-YKRWYDVQSVVPHPGSR 262s sp|P20160|CAP7_HUMAN MTAASCFQS-Q-NPG-VSTVVLGAYDLRRRER-QSRQTFSISSMSENGYD 262s sp|P80015|CAP7_PIG LTAASCFRG-K-NSG-SASVVLGAYDLRQQE--QSRQTFSIRSISQNGYD 262s sp|P08246|ELNE_HUMAN MSAAHCVAN-V-NVR-AVRVVLGAHNLSRRE--PTRQVFAVQRIFENGYD 262s sp|Q00871|CTRB1_PENVA LTAAHCMDG-A-GF---VEVVLGAHNIRQNEA-SQVSITSTDFFTHENWN 262s sp|P07338|CTRB1_RAT VTAAHC--G-V-KT--SDVVVAGEFDQGSDEE-NIQVLKIAQVFKNPKFN 262s sp|P00773|ELA1_RAT MTAAHCV-S-SQM---TFRVVVGDHNLSQNDG-TEQYVSVQKIMVHPTWN 262s sp|Q91VE3|KLK7_MOUSE LTAAHCK---M-G---QYQVQLGSDKI-GDQ--SAQKIKATKSFRHPGYS 262s sp|Q6H321|KLK2_HORSE LTAAHCM---S-D---DYQIWLGRHNLSEDED-TAQFHQVSDSFLDPQFD 262s sp|P00757|KLKB4_MOUSE LTAAHCY---N-D---KYQVWLGKNNFLEDEP-SDQHRLVSKAIPHPDFN 262s sp|Q03238|GRAM_RAT LTAAHCL-SEPLQ---QLKLVFGLHSLHDPQD-PGLTFYIKQAIKHPGYN 262s :: * * : * 262s 262s sp|Q06606|GRZ2_RAT RD-SH----------F--NDIMLLKLERKAQLNGVVKTIALPR-SQDWVK 262s sp|P08884|GRAE_MOUSE AT-AF----------F--SDIMLLKLESKAKRTKAVRPLKLPR-PNARVK 262s sp|P21844|MCPT5_MOUSE EN-LV----------V--HDIMLLKLKEKAKLTLGVGTLPLSA-NFNFIP 262s sp|O35205|GRAK_MOUSE SG-SA----------S--HDIMLIKLRTAAELNKNVQLLHLG--SKNYLR 262s sp|Q9Y5K2|KLK4_HUMAN R---------PLL---A-NDLMLIKLDESVSESDTIRSISIAS-QCPTA- 262s sp|Q7YRZ7|GRAA_BOVIN PQ-TF----------E--GDLQLLQLEGKATMTKAVGILQLPR-TEDDVK 262s sp|P29786|TRY3_AEDAE GD-TY----------N--YDFSLLELDESIGFSRSIEAIALPD-ASETVA 262s sp|P35037|TRY3_ANOGA DS-TI----------D--YDFSLMELESELTFSDVVQPVSLPD-QDEAVE 262s sp|P03953|CFAD_MOUSE PD-SL----------E--DDLILFKLSQNASLGPHVRPLPLQY-EDKEVE 262s sp|P20160|CAP7_HUMAN PQQNL-------------NDLMLLQLDREANLTSSVTILPLPL-QNATVE 262s sp|P80015|CAP7_PIG PRQNL-------------NDVLLLQLDREARLTPSVALVPLPP-QNATVE 262s sp|P08246|ELNE_HUMAN PV-NL----------L--NDIVILQLNGSATINANVQVAQLPA-QGRRLG 262s sp|Q00871|CTRB1_PENVA SW-LL----------T--NDIALIRLPSPVSLNSNIKTVKLP--S-SDVS 262s sp|P07338|CTRB1_RAT MF-TV----------R--NDITLLKLATPAQFSETVSAVCLPN-VDDDFP 262s sp|P00773|ELA1_RAT SN-NV----------AAGYDIALLRLAQSVTLNNYVQLAVLPQ-EGTILA 262s sp|Q91VE3|KLK7_MOUSE T---------KTH---V-NDIMLVRLDEPVKMSSKVEAVQLPE-HCEPP- 262s sp|Q6H321|KLK2_HORSE LS-LLKKKYLRPYDDIS-HDLMLLRLAQPARITDAVKILDLPT-QEPKL- 262s sp|P00757|KLKB4_MOUSE MS-LLNEHTPQPEDDYS-NDLMLLRLSKPADITDVVKPITLPT-EEPKL- 262s sp|Q03238|GRAM_RAT LK--Y----------E--NDLALLKLDGRVKPSKNVKPLALPRKPRDKPA 262s *. :..* : : 262s 262s sp|Q06606|GRZ2_RAT PGQVCTVAGWG--RL-ANCTSSNTLQEVNLEVQKGQKCQ-DM-----SED 262s sp|P08884|GRAE_MOUSE PGDVCSVAGWGSRSI-NDTKASARLREAQLVIQEDEECK-KR-----FRH 262s sp|P21844|MCPT5_MOUSE PGRMCRAVGWG-RTN-VNEPASDTLQEVKMRLQEPQACKHF-TSF-RH-N 262s sp|O35205|GRAK_MOUSE DGTKCQVTGWGTTKP-DLLTASDTLREVTVTIISRKRCN-S-QSYYNHKP 262s sp|Q9Y5K2|KLK4_HUMAN -GNSCLVSGWGLLAN--G-RMPTVLQCVNVSVVSEEVCS-K--L---YDP 262s sp|Q7YRZ7|GRAA_BOVIN PHTKCHVAGWGSTKK-DACQMSNALREANVTVIDRKICN-DAQH-YNFNP 262s sp|P29786|TRY3_AEDAE DGAMCTVSGWGDTKN-VF-EMNTLLRAVNVPSYNQAECA-A--A-LVNVV 262s sp|P35037|TRY3_ANOGA DGTMTIVSGWGNTQS-AA-ESNAILRAANVPTVNQKECT-I--A-YSSSG 262s sp|P03953|CFAD_MOUSE PGTLCDVAGWGVVTH-AG-RRPDVLHQLRVSIMNRTTCN-L--RTYH-DG 262s sp|P20160|CAP7_HUMAN AGTRCQVAGWGSQRS-GG-RLSRFPRFVNVTVTPEDQCR-P--N---N-V 262s sp|P80015|CAP7_PIG AGTNCQVAGWGTQRL-RR-LFSRFPRVLNVTVTS-NPCL-P--R---D-M 262s sp|P08246|ELNE_HUMAN NGVQCLAMGWGLLGR-NR-GIASVLQELNVTVVT-SLCR-R--S---N-V 262s sp|Q00871|CTRB1_PENVA VGTTVTPTGWGRPSD-SASGISDVLRQVNVPVMTNADCD-S--V--YG-- 262s sp|P07338|CTRB1_RAT PGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCK-K--S--WGSK 262s sp|P00773|ELA1_RAT NNNPCYITGWGRTRT-NG-QLSQTLQQAYLPSVDYSICS---SSSYWGST 262s sp|Q91VE3|KLK7_MOUSE -GTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECK-K--V---YKD 262s sp|Q6H321|KLK2_HORSE -GSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCA-R--A---YPE 262s sp|P00757|KLKB4_MOUSE -GSTCLASGWG-STTPIKFKYPDDLQCVNLKLLPNEDCD-K--A---HEM 262s sp|Q03238|GRAM_RAT EGSRCSTAGWGITHQ-RG-QLAKSLQELDLRLLDTRMCN-NSRF---WNG 262s *** : * 262s 262s sp|Q06606|GRZ2_RAT YNDSI-QLCVGNPSEGK-A-TGKGDSGGPFV---CD-GVAQGIVSYR--L 262s sp|P08884|GRAE_MOUSE YTETT-EICAGDLKKIK-T-PFKGDSGGPLV---CD-NKAYGLLAYA--K 262s sp|P21844|MCPT5_MOUSE -S----QLCVGNPKKMQ-N-VYKGDSGGPLL---CA-GIAQGIASYV--H 262s sp|O35205|GRAK_MOUSE VITKD-MICAGD-ARGQKD-SCKGDSGGPLI---CK-GIFHALVSQG--Y 262s sp|Q9Y5K2|KLK4_HUMAN LYHPS-MFCAGGGQDQK-D-SCNGDSGGPLI---CN-GYLQGLVSFG--K 262s sp|Q7YRZ7|GRAA_BOVIN VIDLS-MICAGG-RKGEDD-SCEGDSGSPLI---CD-NVFRGVTSFG--- 262s sp|P29786|TRY3_AEDAE PVTEQ-MICAGYAAGGK-D-SCQGDSGGPLVS---G-DKLVGVVSWG--K 262s sp|P35037|TRY3_ANOGA GITDR-MLCAGYKRGGK-D-ACQGDSGGPLVV---D-GKLVGVVSWG--F 262s sp|P03953|CFAD_MOUSE VVTIN-MMCA-E-SNRR-D-TCRGDS 262s 262s OUTPUT RESULTS 262s #### File Type= GUIDE_TREE Format= newick Name= proteases_small.dnd 262s #### File Type= MSA Format= clustalw Name= proteases_small.clustalw 262s #### File Type= MSA Format= html Name= proteases_small.html 262s 262s # Command Line: t_coffee proteases_small.fasta -aln g0.aln g5.aln g10.aln g15.aln -output clustalw html [PROGRAM:T-COFFEE] 262s # T-COFFEE Memory Usage: Current= 390.841 Mb, Max= 406.172 Mb 262s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 262s # T-COFFEE is available from http://www.tcoffee.org 262s # Register on: https://groups.google.com/group/tcoffee/ 262s GSPLV---CG-DAVEGVVTWG--S 262s sp|P20160|CAP7_HUMAN -CT-G-VL--TR-RGG----ICNGDGGTPLV---CE-GLAHGVASFSL-G 262s sp|P80015|CAP7_PIG -CI-G-VF--SR-RGR----ISQGDRGTPLV---CN-GLAQGVASF-LRR 262s sp|P08246|ELNE_HUMAN -CT-L-VR--GR-QAG----VCFGDSGSPLV---CN-GLIHGIASF-VRG 262s sp|Q00871|CTRB1_PENVA -IVGDGVVCIDG-TGGK-S-TCNGDSGGPLN---LN-GMTYGITSFG--S 262s sp|P07338|CTRB1_RAT -IT-D-VMTCA-GASGV-S-SCMGDSGGPLVCQKDGVWTLAGIVSWG--S 262s sp|P00773|ELA1_RAT -V-KT-TMVCAG-GDGV-RSGCQGDSGGPLHCLVNGQYSVHGVTSFV--S 262s sp|Q91VE3|KLK7_MOUSE LLGKT-MLCAGIPDSKT-N-TCNGDSGGPLV---CN-DTLQGLVSWG--T 262s sp|Q6H321|KLK2_HORSE KMTEF-VLCATHRDDSG-S-ICLGDSGGALI---CD-GVFQGITSWG--Y 262s sp|P00757|KLKB4_MOUSE KVTDA-MLCAGEMDGGS-Y-TCEHDSGGPLI---CD-GILQGITSWG--P 262s sp|Q03238|GRAM_RAT VLTDS-MLCLKAGAKGQ-A-PCKGDSGGPLV---CGKGKVDGILSFS--S 262s * * .: .: : 262s 262s sp|Q06606|GRZ2_RAT -C-TGTL---PRVFTRISS-FIPWIQKT-MKVLQ-----------QS--- 262s sp|P08884|GRAE_MOUSE -N-RTIS---SGVFTKIVH-FLPWISRN-MKL--------------L--- 262s sp|P21844|MCPT5_MOUSE -R--N-AKP-PAVFTRISH-YRPWINKI-LRE--------------N--- 262s sp|O35205|GRAK_MOUSE -K-CGIAKK-PGIYTLLTKKYQTWIKSKLAPS-R-----------AH--- 262s sp|Q9Y5K2|KLK4_HUMAN AP-CGQVGV-PGVYTNLCK-FTEWIEKTVQA-S----------------- 262s sp|Q7YRZ7|GRAA_BOVIN K--CGNPQK-PGIYILLTKKHLNWIKKTIAGAI----------------- 262s sp|P29786|TRY3_AEDAE -G-CALPNL-PGVYARVST-VRQWIREV-SEV------------------ 262s sp|P35037|TRY3_ANOGA -G-CAMPGY-PGVYARVAV-VRDWVREN-SGA------------------ 262s sp|P03953|CFAD_MOUSE -RVCGNGKK-PGVYTRVSS-YRMWIE-NITNGNM-----------TS--- 262s sp|P20160|CAP7_HUMAN -P-CGR-G--PDFFTRVAL-FRDWIDGV-L----NNPGP-----GPA--- 262s sp|P80015|CAP7_PIG -R-FRR-S--SGFFTRVAL-FRNWIDSV-L----NNPP------------ 262s sp|P08246|ELNE_HUMAN -G-CASGLY-PDAFAPVAQ-FVNWIDSI-IQRSEDNPCPHPRDPDPASRT 262s sp|Q00871|CTRB1_PENVA SAGCEK-GY-PAAFTRVYY-YLDWIQQK--------T-----GVTP---- 262s sp|P07338|CTRB1_RAT -G-VCSTST-PAVYSRVTA-LMPWVQQI-LEA------------------ 262s sp|P00773|ELA1_RAT SM-GCNVSKKPTVFTRVSA-YISWMNNV-IAY--------------T--- 262s sp|Q91VE3|KLK7_MOUSE YP-CGQPND-PGVYTQVCK-YKRWVMETMKTHR----------------- 262s sp|Q6H321|KLK2_HORSE SE-CADFND-NFVFTKVMP-HLKWIKETIEKNS----------------- 262s sp|P00757|KLKB4_MOUSE EP-CGEPTE-PSVYTKLIK-FSSWIRETMANNP----------------- 262s sp|Q03238|GRAM_RAT KN-CTDIFK-PTVATAVAP-YSSWIRKV-IGRWS-----------PQPLT 262s : *: 262s 262s sp|Q06606|GRZ2_RAT - 262s sp|P08884|GRAE_MOUSE - 262s sp|P21844|MCPT5_MOUSE - 262s sp|O35205|GRAK_MOUSE - 262s sp|Q9Y5K2|KLK4_HUMAN - 262s sp|Q7YRZ7|GRAA_BOVIN - 262s sp|P29786|TRY3_AEDAE - 262s sp|P35037|TRY3_ANOGA - 262s sp|P03953|CFAD_MOUSE - 262s sp|P20160|CAP7_HUMAN - 262s sp|P80015|CAP7_PIG - 262s sp|P08246|ELNE_HUMAN H 262s sp|Q00871|CTRB1_PENVA - 262s sp|P07338|CTRB1_RAT N 262s sp|P00773|ELA1_RAT - 262s sp|Q91VE3|KLK7_MOUSE - 262s sp|Q6H321|KLK2_HORSE - 262s sp|P00757|KLKB4_MOUSE - 262s sp|Q03238|GRAM_RAT - 262s 262s 262s 262s 263s 263s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 263s -full_log S [0] 263s -genepred_score S [0] nsd 263s -run_name S [0] 263s -mem_mode S [0] mem 263s -extend D [1] 1 263s -extend_mode S [0] very_fast_triplet 263s -max_n_pair D [0] 10 263s -seq_name_for_quadruplet S [0] all 263s -compact S [0] default 263s -clean S [0] no 263s -do_self FL [0] 0 263s -do_normalise D [0] 1000 263s -template_file S [0] 263s -setenv S [0] 0 263s -export S [0] 0 263s -template_mode S [0] 263s -flip D [0] 0 263s -remove_template_file D [0] 0 263s -profile_template_file S [0] 263s -in S [0] 263s -seq S [0] 263s -aln S [0] 263s -method_limits S [0] 263s -method S [0] 263s -lib S [1] sample_aln1.tc_lib 263s -profile S [0] 263s -profile1 S [0] 263s -profile2 S [0] 263s -pdb S [0] 263s -relax_lib D [0] 1 263s -filter_lib D [0] 0 263s -shrink_lib D [0] 0 263s -out_lib W_F [0] no 263s -out_lib_mode S [0] primary 263s -lib_only D [0] 0 263s -outseqweight W_F [0] no 263s -seq_source S [0] ANY 263s -cosmetic_penalty D [0] 0 263s -gapopen D [0] 0 263s -gapext D [0] 0 263s -fgapopen D [0] 0 263s -fgapext D [0] 0 263s -nomatch D [0] 0 263s -newtree W_F [0] default 263s -tree W_F [0] NO 263s -usetree R_F [0] 263s -tree_mode S [0] nj 263s -distance_matrix_mode S [0] ktup 263s -distance_matrix_sim_mode S [0] idmat_sim1 263s -quicktree FL [0] 0 263s -outfile W_F [0] default 263s -maximise FL [1] 1 263s -output S [1] score_ascii html 263s -len D [0] 0 263s -infile R_F [1] sample_aln1.aln 263s -matrix S [0] default 263s -tg_mode D [0] 1 263s -profile_mode S [0] cw_profile_profile 263s -profile_comparison S [0] profile 263s -dp_mode S [0] linked_pair_wise 263s -ktuple D [0] 1 263s -ndiag D [0] 0 263s -diag_threshold D [0] 0 263s -diag_mode D [0] 0 263s -sim_matrix S [0] vasiliky 263s -transform S [0] 263s -extend_seq FL [0] 0 263s -outorder S [0] input 263s -inorder S [0] aligned 263s -seqnos S [0] off 263s -case S [0] keep 263s -cpu D [0] 0 263s -ulimit D [0] -1 263s -maxnseq D [0] -1 263s -maxlen D [0] -1 263s -sample_dp D [0] 0 263s -weight S [0] default 263s -seq_weight S [0] no 263s -align FL [1] 1 263s -mocca FL [0] 0 263s -domain FL [0] 0 263s -start D [0] 0 263s -len D [0] 0 263s -scale D [0] 0 263s -mocca_interactive FL [0] 0 263s -method_evaluate_mode S [0] default 263s -color_mode S [0] new 263s -aln_line_length D [0] 0 263s -evaluate_mode S [0] triplet 263s -get_type FL [0] 0 263s -clean_aln D [0] 0 263s -clean_threshold D [1] 1 263s -clean_iteration D [1] 1 263s -clean_evaluate_mode S [0] t_coffee_fast 263s -extend_matrix FL [0] 0 263s -prot_min_sim D [40] 40 263s -prot_max_sim D [90] 90 263s -prot_trim D [20] 20 263s -prot_min_cov D [40] 40 263s -pdb_type S [0] d 263s -pdb_min_sim D [35] 35 263s -pdb_max_sim D [100] 100 263s -pdb_min_cov D [50] 50 263s -pdb_blast_server W_F [0] EBI 263s -blast W_F [0] 263s -blast_server W_F [0] EBI 263s -pdb_db W_F [0] pdb 263s -protein_db W_F [0] uniref50 263s -method_log W_F [0] no 263s -struc_to_use S [0] 263s -cache W_F [0] use 263s -print_cache FL [0] 0 263s -align_pdb_param_file W_F [0] no 263s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 263s -external_aligner S [0] NO 263s -msa_mode S [0] tree 263s -et_mode S [0] et 263s -master S [0] no 263s -blast_nseq D [0] 0 263s -lalign_n_top D [0] 10 263s -iterate D [1] 0 263s -trim D [0] 0 263s -split D [0] 0 263s -trimfile S [0] default 263s -split D [0] 0 263s -split_nseq_thres D [0] 0 263s -split_score_thres D [0] 0 263s -check_pdb_status D [0] 0 263s -clean_seq_name D [0] 0 263s -seq_to_keep S [0] 263s -dpa_master_aln S [0] 263s -dpa_maxnseq D [0] 0 263s -dpa_min_score1 D [0] 263s -dpa_min_score2 D [0] 263s -dpa_keep_tmpfile FL [0] 0 263s -dpa_debug D [0] 0 263s -multi_core S [0] templates_jobs_relax_msa_evaluate 263s -n_core D [0] 1 263s -thread D [0] 1 263s -max_n_proc D [0] 0 263s -lib_list S [0] 263s -prune_lib_mode S [0] 5 263s -tip S [0] none 263s -rna_lib S [0] 263s -no_warning D [0] 0 263s -run_local_script D [0] 0 263s -proxy S [0] unset 263s -email S [0] 263s -clean_overaln D [0] 0 263s -overaln_param S [0] 263s -overaln_mode S [0] 263s -overaln_model S [0] 263s -overaln_threshold D [0] 0 263s -overaln_target D [0] 0 263s -overaln_P1 D [0] 0 263s -overaln_P2 D [0] 0 263s -overaln_P3 D [0] 0 263s -overaln_P4 D [0] 0 263s -exon_boundaries S [0] 263s -display D [0] 100 263s 263s INPUT FILES 263s Input File (S) sample_aln1.aln Format clustal_aln 263s Input File (L) sample_aln1.tc_lib 263s 263s Identify Master Sequences [no]: 263s 263s Master Sequences Identified 263s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 263s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 263s 263s Multi Core Mode: 1 processors: 263s 5 263s -tip S [0] none 263s -rna_lib S [0] 263s -no_warning D [0] 0 263s -run_local_script D [0] 0 263s -proxy S [0] unset 263s -email S [0] 263s -clean_overaln D [0] 0 263s -overaln_param S [0] 263s -overaln_mode S [0] 263s -overaln_model S [0] 263s -overaln_threshold D [0] 0 263s -overaln_target D [0] 0 263s -overaln_P1 D [0] 0 263s -overaln_P2 D [0] 0 263s -overaln_P3 D [0] 0 263s -overaln_P4 D [0] 0 263s -exon_boundaries S [0] 263s -display D [0] 100 263s 263s INPUT FILES 263s Input File (S) sample_aln1.aln Format clustal_aln 263s Input File (L) sample_aln1.tc_lib 263s 263s Identify Master Sequences [no]: 263s 263s Master Sequences Identified 263s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 263s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 263s 263s Multi Core Mode: 1 processors: 263s 263s --- Process Method/Library/Aln Ssample_aln1.aln 263s xxx Retrieved Ssample_aln1.aln 5 263s -tip S [0] none 263s -rna_lib S [0] 263s -no_warning D [0] 0 263s -run_local_script D [0] 0 263s -proxy S [0] unset 263s -email S [0] 263s -clean_overaln D [0] 0 263s -overaln_param S [0] 263s -overaln_mode S [0] 263s -overaln_model S [0] 263s -overaln_threshold D [0] 0 263s -overaln_target D [0] 0 263s -overaln_P1 D [0] 0 263s -overaln_P2 D [0] 0 263s -overaln_P3 D [0] 0 263s -overaln_P4 D [0] 0 263s -exon_boundaries S [0] 263s -display D [0] 100 263s 263s INPUT FILES 263s Input File (S) sample_aln1.aln Format clustal_aln 263s Input File (L) sample_aln1.tc_lib 263s 263s Identify Master Sequences [no]: 263s 263s Master Sequences Identified 263s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 263s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 263s 263s Multi Core Mode: 1 processors: 263s 263s --- Process Method/Library/Aln Ssample_aln1.aln 263s xxx Retrieved Ssample_aln1.aln 263s --- Process Method/Library/Aln Lsample_aln1.tc_lib 263s xxx Retrieved Lsample_aln1.tc_lib 263s 263s All Methods Retrieved 263s 263s MANUAL PENALTIES: gapopen=0 gapext=0 263s 263s Library Total Size: [2422] 263s 263s Library Relaxation: Multi_proc [1] 263s 263s ! [Relax Library][TOT= 10][ 0 %] ! [Relax Library][TOT= 10][ 20 %] ! [Relax Library][TOT= 10][ 30 %] ! [Relax Library][TOT= 10][ 40 %] ! [Relax Library][TOT= 10][ 50 %] ! [Relax Library][TOT= 10][ 60 %] ! [Relax Library][TOT= 10][ 70 %] ! [Relax Library][TOT= 10][ 80 %] ! [Relax Library][TOT= 10][ 90 %] ! [Relax Library][TOT= 10][100 %] 263s 263s ! [Final Evaluation][TOT= 217][ 0 %] ! [Final Evaluation][TOT= 217][ 1 %] ! [Final Evaluation][TOT= 217][ 2 %] ! [Final Evaluation][TOT= 217][ 3 %] ! [Final Evaluation][TOT= 217][ 4 %] ! [Final Evaluation][TOT= 217][ 5 %] ! [Final Evaluation][TOT= 217][ 6 %] ! [Final Evaluation][TOT= 217][ 7 %] ! [Final Evaluation][TOT= 217][ 8 %] ! [Final Evaluation][TOT= 217][ 9 %] ! [Final Evaluation][TOT= 217][ 10 %] ! [Final Evaluation][TOT= 217][ 11 %] ! [Final Evaluation][TOT= 217][ 12 %] ! [Final Evaluation][TOT= 217][ 13 %] ! [Final Evaluation][TOT= 217][ 14 %] ! [Final Evaluation][TOT= 217][ 15 %] ! [Final Evaluation][TOT= 217][ 16 %] ! 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[Final Evaluation][TOT= 217][ 95 %] ! [Final Evaluation][TOT= 217][ 96 %] ! [Final Evaluation][TOT= 217][ 97 %] ! [Final Evaluation][TOT= 217][ 98 %] ! [Final Evaluation][TOT= 217][ 99 %] ! [Final Evaluation][TOT= 217][100 %] 263s 263s 5 263s -tip S [0] none 263s -rna_lib S [0] 263s -no_warning D [0] 0 263s -run_local_script D [0] 0 263s -proxy S [0] unset 263s -email S [0] 263s -clean_overaln D [0] 0 263s -overaln_param S [0] 263s -overaln_mode S [0] 263s -overaln_model S [0] 263s -overaln_threshold D [0] 0 263s -overaln_target D [0] 0 263s -overaln_P1 D [0] 0 263s -overaln_P2 D [0] 0 263s -overaln_P3 D [0] 0 263s -overaln_P4 D [0] 0 263s -exon_boundaries S [0] 263s -display D [0] 100 263s 263s INPUT FILES 263s Input File (S) sample_aln1.aln Format clustal_aln 263s Input File (L) sample_aln1.tc_lib 263s 263s Identify Master Sequences [no]: 263s 263s Master Sequences Identified 263s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 263s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 263s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 263s 263s Multi Core Mode: 1 processors: 263s 263s --- Process Method/Library/Aln Ssample_aln1.aln 263s xxx Retrieved Ssample_aln1.aln 263s --- Process Method/Library/Aln Lsample_aln1.tc_lib 263s xxx Retrieved Lsample_aln1.tc_lib 263s 263s All Methods Retrieved 263s 263s MANUAL PENALTIES: gapopen=0 gapext=0 263s 263s Library Total Size: [2422] 263s 263s Library Relaxation: Multi_proc [1] 263s 263s Relaxation Summary: [2422]--->[992] 263s 263s 263s 263s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 263s 263s 263s OUTPUT RESULTS 263s #### File Type= MSA Format= score_ascii Name= sample_aln1.score_ascii 263s #### File Type= MSA Format= html Name= sample_aln1.html 263s 263s # Command Line: t_coffee -infile sample_aln1.aln -lib sample_aln1.tc_lib -special_mode evaluate [PROGRAM:T-COFFEE] 263s # T-COFFEE Memory Usage: Current= 389.264 Mb, Max= 405.441 Mb 263s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 263s # T-COFFEE is available from http://www.tcoffee.org 263s # Register on: https://groups.google.com/group/tcoffee/ 265s CLUSTAL W (1.83) multiple sequence alignment 265s 265s sp|Q06606|GRZ2_RAT -------------------------------------------mflflff 265s sp|P08884|GRAE_MOUSE -------------------------m--------ppvlilltlllplgag 265s sp|P21844|MCPT5_MOUSE ------------------------mh--------lltlhllllllgsstk 265s sp|O35205|GRAK_MOUSE --------------------mrfssw--------alvslvagvymssecf 265s sp|Q9Y5K2|KLK4_HUMAN ---------------matagnpwgwf--------lgylilgvagslvsgs 265s sp|Q7YRZ7|GRAA_BOVIN -----------------mnipfpfsf--------ppaiclllipgvfpvs 265s sp|Q00871|CTRB1_PENVA migklslllvcvavasgnpaagkpwh--------wkspkplvdprihvna 265s sp|P08246|ELNE_HUMAN ----------------mtlgrrlacl--------flacvlpalllggtal 265s sp|P03953|CFAD_MOUSE --------------------mhssvy--------fvalvilgaavcaaqp 265s sp|Q91VE3|KLK7_MOUSE --------------------mgvwll--------slitvllslaletagq 265s sp|Q6H321|KLK2_HORSE ---------------------mwflv--------lcldlslgetgalppi 265s sp|Q03238|GRAM_RAT -------------------------l--------llllalktlwavgnrf 265s sp|P20160|CAP7_HUMAN -------------------mtrltvl--------allagllassragssp 265s sp|P07338|CTRB1_RAT --------------------maflwlvscfalvgatfgcgvptiqpvltg 265s sp|P00757|KLKB4_MOUSE ----------------------------------mwflilflalslggid 265s sp|P80015|CAP7_PIG -------------------------------------------------- 265s sp|P29786|TRY3_AEDAE ------mnqflfvsfcalldsakvsa--------------------atls 265s sp|P35037|TRY3_ANOGA -----misnkiaillavlvvavacaqarvaqqhrsvqalprflprpkydv 265s sp|P00773|ELA1_RAT -------------------mlrflvf--------aslvlyghstqdfpet 265s 265s 265s sp|Q06606|GRZ2_RAT lvailpvnteggeiiwgteskphsrpymafik---fy----dsnsephhc 265s sp|P08884|GRAE_MOUSE aeeii-----ggh-----vvkphsrpymafvk---svdiegnr----ryc 265s sp|P21844|MCPT5_MOUSE ageii-----ggt-----eciphsrpymayleivtse----ny-l--sac 265s sp|O35205|GRAK_MOUSE hteii-----ggr-----evqphsrpfmasiq---yr----sk----hic 265s sp|Q9Y5K2|KLK4_HUMAN csqii-----nge-----dcsphsqpwqaalv---me----ne----lfc 265s sp|Q7YRZ7|GRAA_BOVIN cegii-----ggn-----evaphtrrymalik--gl------k-----lc 265s sp|Q00871|CTRB1_PENVA tpriv-----ggv-----eatphswphqaalf---id----dm----yfc 265s sp|P08246|ELNE_HUMAN aseiv-----ggr-----rarphawpfmvslq---lr----gg----hfc 265s sp|P03953|CFAD_MOUSE rgril-----ggq-----eaaaharpymasvq---vn----gt----hvc 265s sp|Q91VE3|KLK7_MOUSE gerii-----dgy-----kckegshpwqvall---kg----nq----lhc 265s sp|Q6H321|KLK2_HORSE qsrii-----ggw-----ecekhskpwqvavy---hq----gh----fqc 265s sp|Q03238|GRAM_RAT eaqii-----ggr-----eavphsrpymvslq---nt----ks----hmc 265s sp|P20160|CAP7_HUMAN lldiv-----ggr-----karprqfpflasiq---nq----gr----hfc 265s sp|P07338|CTRB1_RAT lsriv-----nge-----daipgswpwqvslq---dk---tgf----hfc 265s sp|P00757|KLKB4_MOUSE aappv-----qsq-----vdcensqpwhvavy---rf----nk----yqc 265s sp|P80015|CAP7_PIG ---iv-----ggr-----raqpqefpflasiq---kq----gr----pfc 265s sp|P29786|TRY3_AEDAE sgriv-----ggf-----qidiaevphqvslq--rsg-----r----hfc 265s sp|P35037|TRY3_ANOGA ghriv-----ggf-----eidvsetpyqvslq--yfn-----s----hrc 265s sp|P00773|ELA1_RAT narvv-----gga-----earrnswpsqislq---ylsggswy----htc 265s : . : * 265s 265s sp|Q06606|GRZ2_RAT ggflvakdivmtaahc----ng-------r----nik---vtlgahni-- 265s sp|P08884|GRAE_MOUSE ggflvqddfvltaahc----rn-------r----tmt---vtlgahni-- 265s sp|P21844|MCPT5_MOUSE sgflirrnfvltaahc----ag-------r----sit---vllgahnk-- 265s sp|O35205|GRAK_MOUSE ggvlihpqwvltaahc----y-swfprg-h----spt---vvlgahsl-- 265s sp|Q9Y5K2|KLK4_HUMAN sgvlvhpqwvlsaahc----fq-------n----syt---iglglhsl-e 265s sp|Q7YRZ7|GRAA_BOVIN agalikenwvltaahc----dlk------g----npq---vilgahst-- 265s sp|Q00871|CTRB1_PENVA ggslissewvltaahc----md-------g--agfv---evvlgahni-- 265s sp|P08246|ELNE_HUMAN gatliapnfvmsaahc----van------v----nvravrvvlgahnl-- 265s sp|P03953|CFAD_MOUSE ggtlldeqwvlsaahc----mdgvtddd------svq---vllgahsl-- 265s sp|Q91VE3|KLK7_MOUSE ggvlvdkywvltaahc----km-------g----qyq---vqlgsdki-- 265s sp|Q6H321|KLK2_HORSE ggvlvhpqwvltaahc----ms-------d----dyq---iwlgrhnl-- 265s sp|Q03238|GRAM_RAT ggvlvhqkwvltaahc----lse----plq----qlk---lvfglhslhd 265s sp|P20160|CAP7_HUMAN ggaliharfvmtaasc----fqs---qnpg----vs---tvvlgaydl-- 265s sp|P07338|CTRB1_RAT ggslisedwvvtaahc----gvk------ts----dv---vvagefdq-- 265s sp|P00757|KLKB4_MOUSE ggvlldrnwvltaahc----yn-------d----kyq---vwlgknnf-- 265s sp|P80015|CAP7_PIG agalvhprfvltaasc----frg---knsg----sa---svvlgaydl-- 265s sp|P29786|TRY3_AEDAE ggsiisprwvltrahc----tt-------ntdpaayt---iragstd--- 265s sp|P35037|TRY3_ANOGA ggsvlnskwiltaahctvnlqp-------ss----la---vrlgssr--- 265s sp|P00773|ELA1_RAT ggtlirrnwvmtaahc----vss------q----mtf--rvvvgdhnl-- 265s .. :: ::: * * : * 265s 265s sp|Q06606|GRZ2_RAT -kkqe-ntq-visvvkakphenydr-----------dsh-----fndiml 265s sp|P08884|GRAE_MOUSE -kake-etqqiipvakaiphpdyna-----------taf-----fsdiml 265s sp|P21844|MCPT5_MOUSE -tske-dtwqklevekqflhpkyde-----------nlv-----vhdiml 265s sp|O35205|GRAK_MOUSE -skne-pmkqtfeikkfipfsrlqs-----------gsa-----shdiml 265s sp|Q9Y5K2|KLK4_HUMAN ad-qe-pgsqmveaslsvrhpeyn-----------rpll-----andlml 265s sp|Q7YRZ7|GRAA_BOVIN -shke-kldqvfsikkaipypcfdp-----------qtf-----egdlql 265s sp|Q00871|CTRB1_PENVA -rqnea-sqvsitstdffthenwns-----------wll-----tndial 265s sp|P08246|ELNE_HUMAN -srre-ptrqvfavqrifen-gydp-----------vnl-----lndivi 265s sp|P03953|CFAD_MOUSE -sape-pykrwydvqsvvphpgsrp-----------dsl-----eddlil 265s sp|Q91VE3|KLK7_MOUSE -gdq---saqkikatksfrhpgys-----------tkth-----vndiml 265s sp|Q6H321|KLK2_HORSE -sede-dtaqfhqvsdsfldpqfdlsllkkkylrpyddi-----shdlml 265s sp|Q03238|GRAM_RAT pqdp----gltfyikqaikhpgynl------------ky-----endlal 265s sp|P20160|CAP7_HUMAN -rrrerqsrqtfsissmsen-gydp-----------qqn-----lndlml 265s sp|P07338|CTRB1_RAT -gsde-eniqvlkiaqvfknpkf----------------nmftvrnditl 265s sp|P00757|KLKB4_MOUSE -lede-psdqhrlvskaiphpdfnmsllnehtpqpeddy-----sndlml 265s sp|P80015|CAP7_PIG -rqqe-qsrqtfsirsisqn-gydp-----------rqn-----lndvll 265s sp|P29786|TRY3_AEDAE -rtng-gi--ivkvksviphpqyn---------gdtyny-------dfsl 265s sp|P35037|TRY3_ANOGA -hasg-gt--vvrvarvlehpnyd-----------dstid-----ydfsl 265s sp|P00773|ELA1_RAT -sqnd-gteqyvsvqkimvhptwns-----------nnv---aagydial 265s *. : 265s 265s sp|Q06606|GRZ2_RAT lklerkaqlngvvktia-lp--rsq-dw-vkpgqvctvagwgr-----la 265s sp|P08884|GRAE_MOUSE lkleskakrtkavrplk-lp--rpn-ar-vkpgdvcsvagwgsrsindt- 265s sp|P21844|MCPT5_MOUSE lklkekakltlgvgtlp-ls--an-fnf-ippgrmcravgwgr-----tn 265s sp|O35205|GRAK_MOUSE iklrtaaelnknvqllh-lg--s--kny-lrdgtkcqvtgwgt-----tk 265s sp|Q9Y5K2|KLK4_HUMAN ikldesvsesdtirsis-ia--s---qc-ptagnsclvsgwgl-----la 265s sp|Q7YRZ7|GRAA_BOVIN lqlegkatmtkavgilq-lp--rt-edd-vkphtkchvagwgs-----tk 265s sp|Q00871|CTRB1_PENVA irlpspvslnsniktvk-lp--s---sd-vsvgttvtptgwgr-----ps 265s sp|P08246|ELNE_HUMAN lqlngsatinanvqvaq-lp--aq-grr-lgngvqclamgwgl-----lg 265s sp|P03953|CFAD_MOUSE fklsqnaslgphvrplplqy-----edkevepgtlcdvagwgv-----vt 265s sp|Q91VE3|KLK7_MOUSE vrldepvkmsskveavq-lp--e---hc-eppgtsctvsgwgt-----tt 265s sp|Q6H321|KLK2_HORSE lrlaqparitdavkild-lp--t---qe-pklgstcytsgwgl-----is 265s sp|Q03238|GRAM_RAT lkldgrvkpsknvkpla-lp--rkprdk-paegsrcstagwgi-----th 265s sp|P20160|CAP7_HUMAN lqldreanltssvtilp-lp--lq-nat-veagtrcqvagwgs-----qr 265s sp|P07338|CTRB1_RAT lklatpaqfsetvsavc-lp--nvd-dd-fppgtvcattgwgk-----tk 265s sp|P00757|KLKB4_MOUSE lrlskpaditdvvkpit-lp--t---ee-pklgstclasgwgs-----tt 265s sp|P80015|CAP7_PIG lqldrearltpsvalvp-lp--pq-nat-veagtncqvagwgt-----qr 265s sp|P29786|TRY3_AEDAE leldesigfsrsieaia-lpdase---t-vadgamctvsgwgd-----t- 265s sp|P35037|TRY3_ANOGA meleseltfsdvvqpvs-lp--dqd-ea-vedgtmtivsgwgn-----tq 265s sp|P00773|ELA1_RAT lrlaqsvtlnnyvqlav-lp--qe-gti-lannnpcyitgwgr-----tr 265s ..* : *** 265s 265s sp|Q06606|GRZ2_RAT n-c-t--s-snt---lqevnlevqkgqkcqd----mse--dynd-siqlc 265s sp|P08884|GRAE_MOUSE ----------kasarlreaqlviqedeeckk----rfr--hy-tetteic 265s sp|P21844|MCPT5_MOUSE vne-p--a-sdt---lqevkmrlqepqackh-----ft--sfrh-nsqlc 265s sp|O35205|GRAK_MOUSE pdllt--a-sdt---lrevtvtiisrkrcns--qsyynhkpvit-kdmic 265s sp|Q9Y5K2|KLK4_HUMAN --ngr--m-ptv---lqcvnvsvvseevcsk----lyd--plyh-psmfc 265s sp|Q7YRZ7|GRAA_BOVIN kdacq--m-sna---lreanvtvidrkicnd--aqhynfnpvid-lsmic 265s sp|Q00871|CTRB1_PENVA dsasg--i-sdv---lrqvnvpvmtnadcds----vyg---ivg-dgvvc 265s sp|P08246|ELNE_HUMAN rnr-g--i-asv---lqelnvtvvt-slc--------------r-rsnvc 265s sp|P03953|CFAD_MOUSE hag-r--r-pdv---lhqlrvsimnrttcnl--rtyhd--gvvt-inmmc 265s sp|Q91VE3|KLK7_MOUSE spdvt--f-psd---lmcsdvklissreckk----vyk--dllg-ktmlc 265s sp|Q6H321|KLK2_HORSE tftnr--g-sgt---lqcvelrlqsnekcar----ayp--ekmt-efvlc 265s sp|Q03238|GRAM_RAT qrg-q--l-aks---lqeldlrlldtrmcnn--srfwn--gvlt-dsmlc 265s sp|P20160|CAP7_HUMAN sgg-r--l-srf---prfvnvtvtpedqc--------------r-pnnvc 265s sp|P07338|CTRB1_RAT y---nalktpek---lqqaalpivseadck----kswg--skit-dvmtc 265s sp|P00757|KLKB4_MOUSE pikfk--y-pdd---lqcvnlkllpnedcdk----ahe--mkvt-damlc 265s sp|P80015|CAP7_PIG lr--r--lfsrf---prvlnvtvt-snpc--------------l-prdmc 265s sp|P29786|TRY3_AEDAE knv-f---emnt--llravnvpsynqaecaaalvnvvp----vt-eqmic 265s sp|P35037|TRY3_ANOGA sa--a---esna--ilraanvptvnqkect----iaysssggit-drmlc 265s sp|P00773|ELA1_RAT tng-q--l-sqt---lqqaylpsvdysicss--ssywg--stvk-ttmvc 265s : * * 265s 265s sp|Q06606|GRZ2_RAT vg--npse--g--k--atgkgdsggpfvcd----g--vaqgivsyrl-c- 265s sp|P08884|GRAE_MOUSE ag--dlkk--i--k--tpfkgdsggplvcd----n--kaygllayak-n- 265s sp|P21844|MCPT5_MOUSE vg--npkk--m--q--nvykgdsggpllca----g--iaqgiasyvh-r- 265s sp|O35205|GRAK_MOUSE ag--d--a--r--gqkdsckgdsggplick----g--ifhalvsqgy-k- 265s sp|Q9Y5K2|KLK4_HUMAN ag--g--g--qdqk--dscngdsggplicn------gylqglvsfgk--a 265s sp|Q7YRZ7|GRAA_BOVIN ag--g--r--k--geddscegdsgsplicd------nvfrgvtsfg---- 265s sp|Q00871|CTRB1_PENVA id--g--t--g--g-kstcngdsggplnln------gmtygitsfgs-sa 265s sp|P08246|ELNE_HUMAN tl--v--rgrq--a--gvcfgdsgsplvcn------glihgiasfvr-g- 265s sp|P03953|CFAD_MOUSE ae--s--n--r--r--dtcrgdsgsplvcg----d--avegvvtwgs-r- 265s sp|Q91VE3|KLK7_MOUSE ag--i--p--dskt--ntcngdsggplvcn------dtlqglvswgt--y 265s sp|Q6H321|KLK2_HORSE athrd--d----sg--siclgdsggalicd------gvfqgitswgy--s 265s sp|Q03238|GRAM_RAT lk--agak--g--q--apckgdsggplvcg----k-gkvdgilsfss-k- 265s sp|P20160|CAP7_HUMAN tg--v--ltrr--g--gicngdggtplvce------glahgvasfsl-g- 265s sp|P07338|CTRB1_RAT ag--a--s--g--v--sscmgdsggplvcqkd--gvwtlagivswgs-g- 265s sp|P00757|KLKB4_MOUSE ag--e--m--dggs--ytcehdsggplicd------gilqgitswgp--e 265s sp|P80015|CAP7_PIG ig--v--fsrr--g--risqgdrgtplvcn------glaqgvasflr-r- 265s sp|P29786|TRY3_AEDAE ag--y--aa-g--g-kdscqgdsggplvsg------dklvgvvswgk-g- 265s sp|P35037|TRY3_ANOGA ag--y--krgg--k--dacqgdsggplvvd------gklvgvvswgf-g- 265s sp|P00773|ELA1_RAT ag--g--d-gv--r--sgcqgdsggplhclvngqy--svhgvtsfvssm- 265s * * .: .: : 265s 265s sp|Q06606|GRZ2_RAT tg-t----l-p-rvftriss-fipwiqktmk--vlqqs------------ 265s sp|P08884|GRAE_MOUSE ---rti-ss-g--vftkivh-flpwisrnmkl-l---------------- 265s sp|P21844|MCPT5_MOUSE na-k------ppavftrish-yrpwinkilren----------------- 265s sp|O35205|GRAK_MOUSE -c-g-i-akkp-giytlltkkyqtwiksklapsrah-------------- 265s sp|Q9Y5K2|KLK4_HUMAN pcgq-v-gv-p-gvytnlck-ftewiektvqa-s---------------- 265s sp|Q7YRZ7|GRAA_BOVIN kc-g-n-pqkp-giyilltkkhlnwikktiagai---------------- 265s sp|Q00871|CTRB1_PENVA gc-e-k-gy-p-aaftrvyy-yldwiqqktgvtp---------------- 265s sp|P08246|ELNE_HUMAN gcas-g-ly-p-dafapvaq-fvnwidsiiq-rsednpcphprdpdpasr 265s sp|P03953|CFAD_MOUSE vc-g-n-gkkp-gvytrvss-yrmwienitngnmts-------------- 265s sp|Q91VE3|KLK7_MOUSE pcgq-p-nd-p-gvytqvck-ykrwvmetmkthr---------------- 265s sp|Q6H321|KLK2_HORSE ec-a-d-fndn-fvftkvmp-hlkwiketiekns---------------- 265s sp|Q03238|GRAM_RAT nc-tdi-fk-p-tvatavap-ysswirkvigr-wspqplt---------- 265s sp|P20160|CAP7_HUMAN pc-g-r--g-p-dfftrval-frdwidgvlnnpgpgpa------------ 265s sp|P07338|CTRB1_RAT vc-s-t-st-p-avysrvta-lmpwvqqilean----------------- 265s sp|P00757|KLKB4_MOUSE pc-g-epte-p-svytklik-fsswiretmannp---------------- 265s sp|P80015|CAP7_PIG rf-r-r--s-s-gfftrval-frnwidsvlnnpp---------------- 265s sp|P29786|TRY3_AEDAE -c-a-l-pnlp-gvyarvst-vrqwirevsev------------------ 265s sp|P35037|TRY3_ANOGA ca-m-p-gy-p-gvyarvav-vrdwvrensga------------------ 265s sp|P00773|ELA1_RAT gc-nvs-kk-p-tvftrvsa-yiswmnnviayt----------------- 265s : *: 265s 265s sp|Q06606|GRZ2_RAT -- 265s sp|P08884|GRAE_MOUSE -- 265s sp|P21844|MCPT5_MOUSE -- 265s sp|O35205|GRAK_MOUSE -- 265s sp|Q9Y5K2|KLK4_HUMAN -- 265s sp|Q7YRZ7|GRAA_BOVIN -- 265s sp|Q00871|CTRB1_PENVA -- 265s sp|P08246|ELNE_HUMAN th 265s sp|P03953|CFAD_MOUSE -- 265s sp|Q91VE3|KLK7_MOUSE -- 265s sp|Q6H321|KLK2_HORSE -- 265s sp|Q03238|GRAM_RAT -- 265s sp|P20160|CAP7_HUMAN -- 265s sp|P07338|CTRB1_RAT -- 265s sp|P00757|KLKB4_MOUSE -- 265s sp|P80015|CAP7_PIG -- 265s sp|P29786|TRY3_AEDAE -- 265s sp|P35037|TRY3_ANOGA -- 265s sp|P00773|ELA1_RAT -- 265s 265s 265s 265s 265s CLUSTAL W (1.83) multiple sequence alignment 265s 265s hmgb_chite AD---KPKRPLSaY------M---------------LWLNSARESI---- 265s hmgt_mouse K-----PKRPRSAY------N---------------IYVSESFQEA---- 265s hmgl_wheat DP--NKPKRAPSAF------F---------------VFMGEFREEF---- 265s hmgl_trybr KKDSNAPKRAMTSF------M---------------FFSSDFRSKH---- 265s 1cms GE---VASVPLTNY------LDSQYFGKIYLGTPPQEFTVLFDTGSSDFW 265s 4pep -----IGDEPLENY------LDTEYFGTIGIGTPAQDFTVIFDTGSSNLW 265s 4ape STG-SATTTPIDS-------LDDAYITPVQIGTPAQTLNLDFDTGSSDLW 265s 3app AASGVATNTPTA--------NDEEYITPVTIGG--TTLNLNFDTGSADLW 265s 2apr AG---VGTVPMTDYG-----NDIEYYGQVTIGTPGKKFNLDFDTGSSDLW 265s 1cms_1 YTG-SLHWVPVTVQQYWQFTVDSVTISGVVVACEG-GCQAILDTGTSKLV 265s . 265s 265s hmgb_chite --------------KRENPDF-KVTEVAK-KGGELWR------------- 265s hmgt_mouse ------------------KDD-SAQGKLK-LVNEAWK------------- 265s hmgl_wheat --------------KQKNPKNKSVAAVGK-AAGERWK------------- 265s hmgl_trybr ------------------SDL-SIVEMSK-AAGAAWK------------- 265s 1cms VPSIYCKSNACKNHQRFDPRKSS---TFQ-NLGKPLSIHYGTGS-MQGIL 265s 4pep VPSVYCSSLACSDHNQFNPDDSS---TFE-ATSQELSITYGTGS-MTGIL 265s 4ape VFSSETTASEVDGQTIYTPSKST---TAKLLSGATWSISYGDGSSSSGDV 265s 3app VFSTELPASQQSGHSVYNPSA-----TGKELSGYTWSISYGDGSSASGNV 265s 2apr IASTLCTN-CGSGQTKYDPNQSS---TYQ-ADGRTWSISYGDGSSASGIL 265s 1cms_1 GPSS---------------------------------------------- 265s 265s 265s hmgb_chite -----------------GLK--DKSEWE---------------------- 265s hmgt_mouse -----------------NLSPEEKQAYI---------------------- 265s hmgl_wheat -----------------SLSESEKAPYV---------------------- 265s hmgl_trybr -----------------ELGPEERKVYE---------------------- 265s 1cms GYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP 265s 4pep GYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP 265s 4ape YTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS 265s 3app FTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS 265s 2apr AKDNVNLGGLLIKGQTIELAKREAASFAS-GPND--------GLLGLGFD 265s 1cms_1 --------DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYP 265s 265s 265s hmgb_chite ------------------------AKA--AT------AKQNYIRALQEYE 265s hmgt_mouse ------------------------QLA--KD------DRIRYDNEMKSWE 265s hmgl_wheat ------------------------AKA--NK------LKGEYNKAIAAYN 265s hmgl_trybr ------------------------EMA--EK------DKERYKREM---- 265s 1cms SLASEY---SIPV--------F--DNMMNRH----LVAQDLFSVYM-DRN 265s 4pep SISASG---ATPV--------F--DNLWDQG----LVSQDLFSVYL-SSN 265s 4ape TLNTVSPTQQKTF--------F--DNA--KA----SLDSPVFTADL-GYH 265s 3app SINTVQPQSQTTF--------F--DTV--KS----SLAQPLFAVAL-KHQ 265s 2apr TITTVRG--VKTP--------M--DNLISQG----LISRPIFGVYL-GKA 265s 1cms_1 LTPSAY---TS-QDQGFCTSGFQSENHSQKWILGDVFIREYYSVFD-RAN 265s : 265s 265s hmgb_chite R--NG-----------G 265s hmgt_mouse E--QM--A--------E 265s hmgl_wheat K--GE--S--------A 265s hmgl_trybr ----------------- 265s 1cms G--QESMLTLGAIDPSY 265s 4pep DD-SGSVVLLGGIDSSY 265s 4ape ---APGTYNFGFIDTTA 265s 3app ---QPGVYDFGFIDSSK 265s 2apr KNGGGGEYIFGGYDSTK 265s 1cms_1 N--LVGLA--KAI---- 265s 265s 265s 265s 265s CLUSTAL W (1.83) multiple sequence alignment 265s 265s hmgb_chite ad---kpkrplsay------m---------------lwlnsaresi---- 265s hmgt_mouse k-----pkrprsay------n---------------iyvsesfqea---- 265s hmgl_wheat dp--nkpkrapsaf------f---------------vfmgefreef---- 265s hmgl_trybr kkdsnapkramtsf------m---------------ffssdfrskh---- 265s 1cms ge---vasvpltny------ldsqyfgkiylgtppqeftvlfdtgssdfw 265s 4pep -----igdepleny------ldteyfgtigigtpaqdftvifdtgssnlw 265s 4ape stg-satttpids-------lddayitpvqigtpaqtlnldfdtgssdlw 265s 3app aasgvatntpta--------ndeeyitpvtigg--ttlnlnfdtgsadlw 265s 2apr ag---vgtvpmtdyg-----ndieyygqvtigtpgkkfnldfdtgssdlw 265s 1cms_1 ytg-slhwvpvtvqqywqftvdsvtisgvvvaceg-gcqaildtgtsklv 265s . 265s 265s hmgb_chite --------------krenpdf-kvtevak-kggelwr------------- 265s hmgt_mouse ------------------kdd-saqgklk-lvneawk------------- 265s hmgl_wheat --------------kqknpknksvaavgk-aagerwk------------- 265s hmgl_trybr ------------------sdl-sivemsk-aagaawk------------- 265s 1cms vpsiycksnacknhqrfdprkss---tfq-nlgkplsihygtgs-mqgil 265s 4pep vpsvycsslacsdhnqfnpddss---tfe-atsqelsitygtgs-mtgil 265s 4ape vfssettasevdgqtiytpskst---takllsgatwsisygdgssssgdv 265s 3app vfstelpasqqsghsvynpsa-----tgkelsgytwsisygdgssasgnv 265s 2apr iastlctn-cgsgqtkydpnqss---tyq-adgrtwsisygdgssasgil 265s 1cms_1 gpss---------------------------------------------- 265s 265s 265s hmgb_chite -----------------glk--dksewe---------------------- 265s hmgt_mouse -----------------nlspeekqayi---------------------- 265s hmgl_wheat -----------------slsesekapyv---------------------- 265s hmgl_trybr -----------------elgpeerkvye---------------------- 265s 1cms gydtvtvsnivdiqqtvglstqepgdvftyaefd--------gilgmayp 265s 4pep gydtvqvggisdtnqifglsetepgsflyyapfd--------gilglayp 265s 4ape ytdtvsvggltvtgqavesakkvsssftedstid--------gllglafs 265s 3app ftdsvtvggvtahgqavqaaqqisaqfqqdtnnd--------gllglafs 265s 2apr akdnvnlggllikgqtielakreaasfas-gpnd--------gllglgfd 265s 1cms_1 --------dilniqqaigatqnqygefdidcdnlsymptvvfeingkmyp 265s 265s 265s hmgb_chite ------------------------aka--at------akqnyiralqeye 265s hmgt_mouse ------------------------qla--kd------drirydnemkswe 265s hmgl_wheat ------------------------aka--nk------lkgeynkaiaayn 265s hmgl_trybr ------------------------ema--ek------dkerykrem---- 265s 1cms slasey---sipv--------f--dnmmnrh----lvaqdlfsvym-drn 265s 4pep sisasg---atpv--------f--dnlwdqg----lvsqdlfsvyl-ssn 265s 4ape tlntvsptqqktf--------f--dna--ka----sldspvftadl-gyh 265s 3app sintvqpqsqttf--------f--dtv--ks----slaqplfaval-khq 265s 2apr tittvrg--vktp--------m--dnlisqg----lisrpifgvyl-gka 265s 1cms_1 ltpsay---ts-qdqgfctsgfqsenhsqkwilgdvfireyysvfd-ran 265s : 265s 265s hmgb_chite r--ng-----------g 265s hmgt_mouse e--qm--a--------e 265s hmgl_wheat k--ge--s--------a 265s hmgl_trybr ----------------- 265s 1cms g--qesmltlgaidpsy 265s 4pep dd-sgsvvllggidssy 265s 4ape ---apgtynfgfidtta 265s 3app ---qpgvydfgfidssk 265s 2apr knggggeyifggydstk 265s 1cms_1 n--lvgla--kai---- 265s 265s 265s 265s 265s >sp|P08311|CATG_HUMAN Cathepsin G precursor (EC 3.4.21.20) (CG) - Homo sapiens (Human). 265s MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCG 265s GFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY 265s NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRV 265s SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGD 265s SGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMRSFKLLDQ 265s METPL 265s >sp|P28293|CATG_MOUSE Cathepsin G precursor (EC 3.4.21.20) (Vimentin-specific protease) (VSP) - Mus musculus (Mouse). 265s MQPLLLLLTFILLQGDEAGKIIGGREARPHSYPYMAFLLIQSPEGLSACG 265s GFLVREDFVLTAAHCLGSSINVTLGAHNIQMRERTQQLITVLRAIRHPDY 265s NPQNIRNDIMLLQLRRRARRSGSVKPVALPQASKKLQPGDLCTVAGWGRV 265s SQSRGTNVLQEVQLRVQMDQMCANRFQFYNSQTQICVGNPRERKSAFRGD 265s SGGPLVCSNVAQGIVSYGSNNGNPPAVFTKIQSFMPWIKRTMRRFAPRYQ 265s RPANSLSQAQT 265s >sp|P80931|MCT1A_SHEEP Mast cell protease 1A precursor (EC 3.4.21.-) (SMCP-1A) - Ovis aries (Sheep). 265s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQIKISGKSYRCGG 265s FLVHEDFVLTAAHCLGSSISVTLGAHNIVDRERTQQVIQVRRAIPHPHYN 265s DKTLANDIMLLQLTRKAEMSDAVSPINLPRSLEKVKPGMMCSVAGWGQLG 265s VNMPSADKLQEVNLEVQSEEECIARFKNYIPITQICAGDSTKRKNSFSGD 265s SGGPLVCNGVAQGIVSYGKDDGTTPDVYTRISSFLSWIQRTMRRY 265s >sp|O46683|MCPT3_SHEEP Mast cell protease 3 precursor (EC 3.4.21.-) (SMCP-3) - Ovis aries (Sheep). 265s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQFKISGKSYICGG 265s FLVREDFVLTAAHCLGSSINVTLGAHTITDQERTQQVIQVRRAIPHPDYN 265s DETCANDIMLLQLTRKAEMTDAVSLINLPRSLEKVKPGMMCSVAGWGQLG 265s VNMPSADKLQEVDLEVQREEKCIARFKDYIPVTQICAGDPSKRKDSFLGD 265s SGGPLVCDGVAQGIVSYGKDDGTTPNVYTRISSFLSWIQRTMRQYKNQGS 265s A 265s >sp|P80219|DDN1_BOVIN Duodenase-1 (EC 3.4.21.-) (Duodenase I) (Duodenum serine protease) - Bos taurus (Bovine). 265s IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSIN 265s VTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADIT 265s DKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEE 265s KCIARFKNYIPFTQICAGDPSKRRNSFSGDSGGPLVCNGVAQGIVSYGKN 265s DGTTPDVYTRISSFLPWIKRVMYLFK 265s >sp|P20718|GRAH_HUMAN Granzyme H precursor (EC 3.4.21.-) (Cytotoxic T-lymphocyte proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X) (Cytotoxic serine protease C) (CSP-C) - Homo sapiens (Human). 265s MQPFLLLLAFLLTPGAGTEEIIGGHEAKPHSRPYMAFVQFLQEKSRKRCG 265s GILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAY 265s NPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYV 265s SMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKG 265s DSGGPLVCKDVAQGILSYGNKKGTPPGVYIKVSHFLPWIKRTMKRL 265s >sp|P10144|GRAB_HUMAN Granzyme B precursor (EC 3.4.21.79) (T-cell serine protease 1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte protease) (SECT) (Granzyme-2) (Cathepsin G-like 1) (CTSGL1) (CTLA-1) (Fragmentin-2) (Human lymphocyte protein) (HLP) 265s MQPILLLLAFLLLPRADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCG 265s GFLIQDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAY 265s NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT 265s APLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFK 265s GDSGGPLVCNKVAQGIVSYGRNNGMPPRACTKVSSFVHWIKKTMKRY 265s >sp|P04187|GRAB_MOUSE Granzyme B(G,H) precursor (EC 3.4.21.79) (Cytotoxic cell protease 1) (CCP1) (CTLA-1) (Fragmentin-2) - Mus musculus (Mouse). 265s MKILLLLLTLSLASRTKAGEIIGGHEVKPHSRPYMALLSIKDQQPEAICG 265s GFLIREDFVLTAAHCEGSIINVTLGAHNIKEQEKTQQVIPMVKCIPHPDY 265s NPKTFSNDIMLLKLKSKAKRTRAVRPLNLPRRNVNVKPGDVCYVAGWGRM 265s APMGKYSNTLQEVELTVQKDRECESYFKNRYNKTNQICAGDPKTKRASFR 265s GDSGGPLVCKKVAAGIVSYGYKDGSPPRAFTKVSSFLSWIKKTMKSS 265s >sp|P18291|NKP1_RAT Natural killer cell protease 1 precursor (EC 3.4.21.-) (RNKP-1) (Fragmentin) (Granzyme B) - Rattus norvegicus (Rat). 265s MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKC 265s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKMQQIIPVVKIIPHPA 265s YNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 265s LGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASF 265s RGDSGGPLVCKKVAAGIVSYGQNDGSTPRAFTKVSTFLSWIKKTMKKS 265s >sp|Q06605|GRZ1_RAT Granzyme-like protein 1 precursor (EC 3.4.21.-) (GLP-1) (Granzyme-like protein I) (GLP I) - Rattus norvegicus (Rat). 265s MNLLLLLLTVSLAPTTEAAEIIGGHEADPHSRPYMAYLQYKNEDSRDTIC 265s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKTQQVIPVVKIIPHPA 265s YNAKTISNDIMLLKLKSKAKRTRAVKTLSLPRSNFKVKPGDVCYVAGWGK 265s LGPMGKFPDKLQEVELTVQEDQECETYLKNAYDKANQICAGDPKIKCASF 265s QGDSGGPLVCKKVAAGIVSYGRKDGSTPRAFTKVSTFLSWIEETMKKS 265s >sp|P21812|MCPT4_MOUSE Mast cell protease 4 precursor (EC 3.4.21.-) (MMCP-4) (Serosal mast cell protease) (MSMCP) (Myonase) - Mus musculus (Mouse). 265s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGFTATC 265s GGFLITRQFVMTAAHCSGREITVTLGAHDVSKTESTQQKIKVEKQIVHPK 265s YNFYSNLHDIMLLKLQKKAKETPSVNVIPLPRPSDFIKPGKMCRAAGWGR 265s TGVTEPTSDTLREVKLRIMDKEACKNYWHYDYNLQVCVGSPRKKRSAYKG 265s DSGGPLLCAGVAHGIVSYGRGDAKPPAVFTRISSYVPWINRVIKGE 265s >sp|P23946|MCPT1_HUMAN Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Homo sapiens (Human). 265s MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKF 265s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHP 265s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 265s RTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFK 265s GDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN 265s >sp|P43430|MCPT8_MOUSE Mast cell protease 8 precursor (EC 3.4.21.-) (MMCP-8) - Mus musculus (Mouse). 265s MFLLLVLLVAALPVNAEGGEIIWGTESKPHSRPYMAYIRFNDSKSVYRCG 265s GFLVARDIVMTAAHCNGKVINVTLGIHNLKKKKNTQLIPVSEAIPHESFD 265s NETLVNDIMLLKLERKAQLNSAVDTIALPKSKDWVKPGQVCTVAGWGKLA 265s NCTLSDTLQEVNLEVQKGQKCRSMSQTYNDSIQLCVGNPSENKATGKGDS 265s GGPFVCNGVVQGIVSCRLCTGTLPRVFTRISSFMPWIRKTMKLLQQP 265s >sp|P52195|MCPT1_PAPHA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Papio hamadryas (Hamadryas baboon). 265s MLLLPLPLLLLFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 265s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEKEDTWQELEVIKQFRHP 265s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 265s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 265s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 265s >sp|P56435|MCPT1_MACFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey). 265s MLLLPLPLLLFFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 265s CGGFLIRRNFVLTAVHCAGRSITVTLGAHNITEKEDTWQKLEVIKQFRHP 265s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 265s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 265s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 265s >sp|Q06606|GRZ2_RAT Granzyme-like protein 2 precursor (EC 3.4.21.-) (GLP-2) (Granzyme-like protein II) (GLP II) (Mast cell protease X) (rMCP-X) (rMCP-10) - Rattus norvegicus (Rat). 265s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPHHC 265s GGFLVAKDIVMTAAHCNGRNIKVTLGAHNIKKQENTQVISVVKAKPHENY 265s DRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTVAGWGRL 265s ANCTSSNTLQEVNLEVQKGQKCQDMSEDYNDSIQLCVGNPSEGKATGKGD 265s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKVLQQS 265s >sp|P13366|GRAG_MOUSE Granzyme G precursor (EC 3.4.21.-) (CTL serine protease 1) (MCSP-1) - Mus musculus (Mouse). 265s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMAFIKSVDIEGKKKYC 265s GGFLVQDDFVLTAAHCRNRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPA 265s FNRKHGTNDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGK 265s TSINATKASARLREAQLIIQEDEECKKLWYTYSKTTQICAGDPKKVQAPY 265s EGESGGPLVCDNLAYGVVSYGINRTITPGVFTKVVHFLPWISTNMKLL 265s >sp|P79204|MCPT2_SHEEP Mast cell protease 2 precursor (EC 3.4.21.-) (SMCP-2) - Ovis aries (Sheep). 265s MHRPPLPLVLLLLCCRAQAGEIIGGTESKPHSRPYMAYLEIVTSQEKQVA 265s CGGFLIRRDFVLTAAHCAGRSVTVTLGAHNIQKKEDTWQRLEVIKQFPYP 265s KYEPVGVHDIMLLKLKEKANLTLAVGTLPLPPHVTFIRPGRMCQVAGWGR 265s TGVKEPASSTLQEVKLRLMEPRACRHFRAFDHNLQLCVGNPQSTKSAFKG 265s DSGGPLLCAGVAQGIVSYGLSSAKPPAVFTRISPYRPWIDEVLKEN 265s >sp|P11034|MCPT1_MOUSE Mast cell protease 1 precursor (EC 3.4.21.-) (MMCP-1) - Mus musculus (Mouse). 265s MQALLFLMALLLPSGAGAEEIIGGVEARPHSRPYMAHLKIITDRGSEDRC 265s GGFLIAPQFVLTAAHCKGREITVTLGAHDVSKSESTQQRIKVEKQIIHKN 265s YNVSFNLYDIMLLKLEEKAELTPTVDVIPLPGPSDFIDPGKMCWTAGWGK 265s TGEKEPTSETLREVELRIMDKEACKMYKHYDYNFQVCVGSSTKLKTAYMG 265s DSGGPLLCAGVAHGIVSYGDSHGKPPAVFTRISAYVPWIKTVINGK 265s >sp|P21842|MCPT1_CANFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Canis familiaris (Dog). 265s MHCLPLTLLLLLLCSRAEAEEIIGGTESKPHSRPYMAHLEILTLRNHLAS 265s CGGFLIRRNFVLTAAHCAGRFIMVTLGAHNIQKKEDTWQKLEVIKQFPHP 265s KYDDLTLRHDIMLLKLKEKANLTLAVGTLPLSPQFNFVPPGRMCRVAGWG 265s KRQVNGSGSDTLQEVKLRLMDPQACRHYMAFDHNLQLCVGNPRKTKSAFK 265s GDSGGPLLCAGVAQGIVSYGQNDAKPPAVFTRISHYRPWINKVLKQNKA 265s >sp|P08882|GRAC_MOUSE Granzyme C precursor (EC 3.4.21.-) (Cytotoxic cell protease 2) (CCP2) (B10) - Mus musculus (Mouse). 265s MPPVLILLTLLLPLRAGAEEIIGGNEISPHSRPYMAYYEFLKVGGKKMFC 265s GGFLVRDKFVLTAAHCKGSSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 265s YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK 265s VTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASF 265s EEDSGGPLVCKRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKKTMKHS 265s >sp|P97594|MCPT8_RAT Mast cell protease 8 precursor (EC 3.4.21.-) (Mast cell protease VIII) (rMCP-VIII) (rMCP-8) - Rattus norvegicus (Rat). 265s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMASLMFYYGNSYRHYC 265s GGFLVAKDIVMTAAHCNGSNIKVTLGAHNIKKQEKTQVIAVVKAKPHENY 265s DRHSRFNDIMLLKLERKAQLNGAVKTIALPRSQDWVKPGQVCTVAGWGCL 265s ANCSLSNTLQEVNLEVQEGQKCEDMSRNYNDSIQLCVGNPSEGKATGKGD 265s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKLLQQS 265s >sp|P09650|MCPT1_RAT Mast cell protease 1 precursor (EC 3.4.21.39) (Mast cell protease I) (RMCP-I) (RMCP-1) (Chymase) (Chymotrysin-like protease) (CLIP protein) - Rattus norvegicus (Rat). 265s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGYKATC 265s GGFLVTRQFVMTAAHCKGRETTVTLGVHDVSKTESTQQKIKVEKQIVHPN 265s YNFYSNLHDIMLLKLQKKAKVTPAVDVIPLPQPSDFLKPGKMCRAAGWGQ 265s TGVTKPTSNTLREVKQRIMDKEACKNYFHYNYNFQVCVGSPRKIRSAYKG 265s DSGGPLVCAGVAHGIVSYGRGDAKPPAVFTRISPYVPWINKVIKGKDLTS 265s LSLHESESPS 265s >sp|P50340|MCPT1_MERUN Mast cell protease 1 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 265s MQALLFLLALLWPPEAGAEEIIGGVESKPHSRPYMAHLTITTKQGFTASC 265s GGFLINPQFVMTAAHCKGREITVTLGAHDVSKKESTQQKIKVAKQIAHPS 265s YSFYSNLHDIMLLKLQKKAKVTASVDVISLPSPSDFINPGKVCRAAGWGR 265s TGVTEPTSDKLREVKLRIMTKAACKNYEHYDYNFQVCVGSPSKIRSAYKG 265s DSGGPLVCAGVAHGIVSYGRIDAKPPAVFTRISPYVPWINLVIRGK 265s >sp|P08883|GRAF_MOUSE Granzyme F precursor (EC 3.4.21.-) (Cytotoxic cell protease 4) (CCP4) (CTL serine protease 3) (C134) (Cytotoxic serine protease 3) (MCSP3) - Mus musculus (Mouse). 265s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMARVRFVKDNGKRHSC 265s GGFLVQDYFVLTAAHCTGSSMRVILGAHNIRAKEETQQIIPVAKAIPHPA 265s YDDKDNTSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGHVCSVAGWGR 265s TSINATQRSSCLREAQLIIQKDKECKKYFYKYFKTMQICAGDPKKIQSTY 265s SGDSGGPLVCNNKAYGVLTYGLNRTIGPGVFTKVVHYLPWISRNMKLL 265s >sp|P08884|GRAE_MOUSE Granzyme E precursor (EC 3.4.21.-) (Cytotoxic cell protease 3) (CCP3) (CTL serine protease 2) (D12) (Cytotoxic serine protease 2) (MCSP2) - Mus musculus (Mouse). 265s MPPVLILLTLLLPLGAGAEEIIGGHVVKPHSRPYMAFVKSVDIEGNRRYC 265s GGFLVQDDFVLTAAHCRNRTMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 265s YNATAFFSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGS 265s RSINDTKASARLREAQLVIQEDEECKKRFRHYTETTEICAGDLKKIKTPF 265s KGDSGGPLVCDNKAYGLLAYAKNRTISSGVFTKIVHFLPWISRNMKLL 265s >sp|P00770|MCPT2_RAT Mast cell protease 2 precursor (EC 3.4.21.-) (Mast cell protease II) (rMCP-II) (rMCP-2) (Group-specific protease) - Rattus norvegicus (Rat). 265s MQALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMAHLDIVTEKGLRVIC 265s GGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHES 265s YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK 265s TGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMG 265s DSGGPLLCAGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINAVINTSS 265s >sp|P11033|GRAD_MOUSE Granzyme D precursor (EC 3.4.21.-) - Mus musculus (Mouse). 265s MPPILILLTLLLPLRAGAEEIIGGHVVKPHSRPYMAFVMSVDIKGNRIYC 265s GGFLIQDDFVLTAAHCKNSSMTVTLGAHNITAKEETQQIIPVAKDIPHPD 265s YNATIFYSDIMLLKLESKAKRTKAVRPLKLPRSNARVKPGDVCSVAGWGS 265s RSINDTKASARLREVQLVIQEDEECKKRFRYYTETTEICAGDLKKIKTPF 265s KGDSGGPLVCHNQAYGLFAYAKNGTISSGIFTKVVHFLPWISWNMKLL 265s >sp|P97592|MCPT4_RAT Mast cell protease 4 precursor (EC 3.4.21.-) (Mast cell protease IV) (rMCP-IV) (rMCP-4) - Rattus norvegicus (Rat). 265s MKALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMALLKIVTEEGHVTFC 265s GGFLISLQFVLTAAHCHGREITVTLGAHDMSKRESTQQKIKVVKQIFPLK 265s YNLFSNFRDIMLLKLEQKAVLTPSVNVIPLPQSSDIIKPGTMCLAAGWGQ 265s TGVKEPNSNTLREVMLRIMEMKACKDYRHYDNRFQICVGIPQMLKLAYKG 265s DSGGPLVCAGVAHGIVSHGPGRGIPPIIFTRISSYVSWINRVIRGN 265s >sp|O35164|MCPT9_MOUSE Mast cell protease 9 precursor (EC 3.4.21.-) (MMCP-9) - Mus musculus (Mouse). 265s MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAIC 265s GGFLIAPQFVMTAAHCSGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 265s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 265s TGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 265s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE 265s >sp|Q00356|MCPTX_MOUSE Mast cell protease-like protein precursor (EC 3.4.21.-) - Mus musculus (Mouse). 265s MQALLFLMALLLPSGAGAEEIIGGVESEPHSRPYMAYVNTFRRKGYVAIC 265s GGFLITPQFVMTAAHCRGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 265s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 265s TGVKKIISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 265s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGK 265s >sp|P50339|MCPT3_RAT Mast cell protease 3 precursor (EC 3.4.21.-) (Mast cell protease III) (rMCP-III) (rMCP-3) (Chymase 1) - Rattus norvegicus (Rat). 265s MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSA 265s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHP 265s NYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 265s RTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYK 265s GDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN 265s >sp|P21844|MCPT5_MOUSE Mast cell protease 5 precursor (EC 3.4.21.-) (MMCP-5) (Mast cell chymase 1) - Mus musculus (Mouse). 265s MHLLTLHLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSENYLSA 265s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTSKEDTWQKLEVEKQFLHP 265s KYDENLVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 265s RTNVNEPASDTLQEVKMRLQEPQACKHFTSFRHNSQLCVGNPKKMQNVYK 265s GDSGGPLLCAGIAQGIASYVHRNAKPPAVFTRISHYRPWINKILREN 265s >sp|P50341|MCPT2_MERUN Mast cell protease 2 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 265s MHLLALHLLLFLLGSRAKAGEIIGGTECKPHSRPYMAYLEIATSKNYLST 265s CSGFLIRRNFVLTAAHCSGRSITVLLGAHNKTAKEDTWQKIEVEKQFPHP 265s KYDDYSVLHDIMLLKLKEKAKLTLAVGTLPLPAKFSFIPPGRVCRAVGWG 265s KTNVNEPTSDTLQEVKMRLLEAEGCKHFTNFYHSSQLCVGNPKKMQNVYK 265s GDSGGPLLCAGIAQGIASYVRRNARPPAVFTRISHYRPWINKILREN 265s >sp|P15119|MCPT2_MOUSE Mast cell protease 2 precursor (EC 3.4.21.-) (MMCP-2) - Mus musculus (Mouse). 265s MQALLFLMALLLPSGAGAEEIIGGVEAKPHSRPYMAYLKFTTKNGSKERC 265s GGFLIAPQFVMTAAHCNGSEISVILGAHNINKNEPTQQIIKTEKTFVHPK 265s FQYLSGFYDIMLLKLQKKAELNSDVDVISLPSSSDFIKPGKMCWTAGWGK 265s TGKNNPLSVTLREVELRIMDQEACKDHSDYDYQLQVCAGSPTTSKSIGQG 265s DSGGPLVCDSVAHGIASSYEAKAPAVFTRISYYLPWIYKVLKSK 265s >sp|P35033|TRY3_SALSA Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Fragment) - Salmo salar (Atlantic salmon). 265s FAVAFAAPIDDEDDKIVGGYECRKNSASYQASLQSGYHFCGGSLISSTWV 265s VSAAHCYKSRIQVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSRNLDNDI 265s MLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGSSSNYPDTL 265s RCLDLPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVVCNG 265s QLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMSSN 265s >sp|P70059|TRY2_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 265s MKFLVILVLLGAAVAFEDDDKIVGGFTCAKNAVPYQVSLNAGYHFCGGSL 265s INSQWVVSAAHCYKSRIQVRLGEHNIALNEGTEQFIDSQKVIKHPNYNSR 265s NLDNDIMLIKLSTTARLSANIQSVPLPSACASAGTNCLISGWGNTLSSGT 265s NYPDLLQCLNAPILTDSQCSNSYPGEITKNMFCAGFLAGGKDSCQGDSGG 265s PVVCNGQLQGVVSWGYGCAQRNYPGVYTKVCNFVTWIQSTISSN 265s >sp|P35032|TRY2_SALSA Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Fragment) - Salmo salar (Atlantic salmon). 265s AAFATEDDKIVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHC 265s YQSRVEVRLGEHNIQVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLS 265s KPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 265s LSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQGVVS 265s WGYGCAEPGNPGVYAKVCIFNDWLTSTMATY 265s >sp|P00762|TRY1_RAT Anionic trypsin-1 precursor (EC 3.4.21.4) (Anionic trypsin I) (Pretrypsinogen I) - Rattus norvegicus (Rat). 265s MSALLILALVGAAVAFPLEDDDKIVGGYTCPEHSVPYQVSLNSGYHFCGG 265s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFINAAKIIKHPNYS 265s SWTLNNDIMLIKLSSPVKLNARVAPVALPSACAPAGTQCLISGWGNTLSN 265s GVNNPDLLQCVDAPVLSQADCEAAYPGEITSSMICVGFLEGGKDSCQGDS 265s GGPVVCNGQLQGIVSWGYGCALPDNPGVYTKVCNFVGWIQDTIAAN 265s >sp|P35031|TRY1_SALSA Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Salmo salar (Atlantic salmon). 265s MISLVFVLLIGAAFATEDDKIVGGYECKAYSQTHQVSLNSGYHFCGGSLV 265s NENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYN 265s IDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD 265s SNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV 265s VCNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMASY 265s >sp|P06872|TRY2_CANFA Anionic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 265s MNPLLILAFLGAAVATPTDDDDKIVGGYTCEENSVPYQVSLNAGYHFCGG 265s SLISDQWVVSAAHCYKSRIQVRLGEYNIDVLEGNEQFINSAKVIRHPNYN 265s SWILDNDIMLIKLSSPAVLNARVATISLPRACAAPGTQCLISGWGNTLSS 265s GTNYPELLQCLDAPILTQAQCEASYPGQITENMICAGFLEGGKDSCQGDS 265s GGPVVCNGELQGIVSWGYGCAQKNKPGVYTKVCNFVDWIQSTIAANS 265s >sp|P24158|PRTN3_HUMAN Myeloblastin precursor (EC 3.4.21.76) (Leukocyte proteinase 3) (PR-3) (PR3) (AGP7) (Wegener's autoantigen) (P29) (C-ANCA antigen) (Neutrophil proteinase 4) (NP-4) - Homo sapiens (Human). 265s MAHRPPSPALASVLLALLLSGAARAAEIVGGHEAQPHSRPYMASLQMRGN 265s PGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHF 265s SVAQVFLNNYDAENKLNDVLLIQLSSPANLSASVATVQLPQQDQPVPHGT 265s QCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 265s GDSGGPLICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLRRV 265s EAKGRP 265s >sp|P07477|TRY1_HUMAN Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) (Cationic trypsinogen) - Homo sapiens (Human). 265s MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNSGYHFCGG 265s SLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYD 265s RKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASS 265s GADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDS 265s GGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 265s >sp|P16049|TRY1_GADMO Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Gadus morhua (Atlantic cod). 265s MKSLIFVLLLGAVFAEEDKIVGGYECTKHSQAHQVSLNSGYHFCGGSLVS 265s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSYNI 265s NNDIMLIKLTKPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVADG 265s DKLQCLSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 265s CNGVLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTMANY 265s >sp|Q9UKR3|KLK13_HUMAN Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like protein 4) (KLK-L4) - Homo sapiens (Human). 265s MWPLALVIASLTLALSGGVSQESSKVLNTNGTSGFLPGGYTCFPHSQPWQ 265s AALLVQGRLLCGGVLVHPKWVLTAAHCLKEGLKVYLGKHALGRVEAGEQV 265s REVVHSIPHPEYRRSPTHLNHDHDIMLLELQSPVQLTGYIQTLPLSHNNR 265s LTPGTTCRVSGWGTTTSPQVNYPKTLQCANIQLRSDEECRQVYPGKITDN 265s MLCAGTKEGGKDSCEGDSGGPLVCNRTLYGIVSWGDFPCGQPDRPGVYTR 265s VSRYVLWIRETIRKYETQQQKWLKGPQ 265s >sp|Q91041|TRYX_GADMO Trypsin-10 precursor (EC 3.4.21.4) (Trypsin X) - Gadus morhua (Atlantic cod). 265s MKSLIFVLLLGAVFAEEDKIVGGYECTRHSQAHQVSLNSGYHFCGGSLVS 265s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQFISSSSVIRHPNYSSYNI 265s DNDIMLIKLTEPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVDDG 265s DKLQCLNLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 265s CNGVLQGVVSWGYGCAERDNPGVYAKVCVLSGWVRDTMASY 265s >sp|Q90627|TRY1_CHICK Trypsin I-P1 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 265s MKFLVLVAFVGVTVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 265s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 265s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 265s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 265s DSGGPVVCNGQLQGIVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 265s >sp|P51779|CFAD_PIG Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Sus scrofa (Pig). 265s MADRSGHLAALILLGAAVCVAQPRGRILGGQEAKSHERPYMASVQVNGKH 265s VCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSLSQPEPSKRLYDVLR 265s AVPHPDSQPDTIDHDLLLLKLSEKAELGPAVQPLAWQREDHEVPAGTLCD 265s VAGWGVVSHTGRRPDRLQHLLLPVLDRTTCNLRTYHDGTITERMMCAESN 265s RRDSCKGDSGGPLVCGGVAEGVVTSGSRVCGNRKKPGIYTRLASYVAWID 265s GVMADSAAA 265s >sp|P00746|CFAD_HUMAN Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Homo sapiens (Human). 265s MHSSVYFAVLVLLGAAACAARPRGRILGGREAEAHARPYMASVQLNGAHL 265s CGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRA 265s VPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDV 265s AGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR 265s RDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 265s VLA 265s >sp|Q9H2R5|KLK15_HUMAN Kallikrein-15 precursor (EC 3.4.21.-) (ACO protease) - Homo sapiens (Human). 265s MWLLLTLSFLLASTAAQDGDKLLEGDECAPHSQPWQVALYERGRFNCGAS 265s LISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTTSRVIPHPRYEA 265s RSHRNDIMLLRLVQPARLNPQVRPAVLPTRCPHPGEACVVSGWGLVSHNE 265s PGTAGSPRSQVSLPDTLHCANISIISDTSCDKSYPGRLTNTMVCAGAEGR 265s GAESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCHYLEWIR 265s ETMKRN 265s >sp|P00761|TRYP_PIG Trypsin precursor (EC 3.4.21.4) - Sus scrofa (Pig). 265s FPTDDDDKIVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY 265s KSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSS 265s PATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 265s LSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVS 265s WGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 265s >sp|P08426|TRY3_RAT Cationic trypsin-3 precursor (EC 3.4.21.4) (Cationic trypsin III) (Pretrypsinogen III) - Rattus norvegicus (Rat). 265s MKALIFLAFLGAAVALPLDDDDDKIVGGYTCQKNSLPYQVSLNAGYHFCG 265s GSLINSQWVVSAAHCYKSRIQVRLGEHNIDVVEGGEQFIDAAKIIRHPSY 265s NANTFDNDIMLIKLNSPATLNSRVSTVSLPRSCGSSGTKCLVSGWGNTLS 265s SGTNYPSLLQCLDAPVLSDSSCKSSYPGKITSNMFCLGFLEGGKDSCQGD 265s SGGPVVCNGQLQGVVSWGYGCAQKGKPGVYTKVCNYVNWIQQTVAAN 265s >sp|P12544|GRAA_HUMAN Granzyme A precursor (EC 3.4.21.78) (Cytotoxic T-lymphocyte proteinase 1) (Hanukkah factor) (H factor) (HF) (Granzyme-1) (CTL tryptase) (Fragmentin-1) - Homo sapiens (Human). 265s MRNSYRFLASSLSVVVSLLLIPEDVCEKIIGGNEVTPHSRPYMVLLSLDR 265s KTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKE 265s FPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQV 265s AGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 265s LRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKH 265s LNWIIMTIKGAV 265s >sp|Q90628|TRY2_CHICK Trypsin I-P38 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 265s MKFLVLVAFLGVAVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 265s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 265s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 265s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 265s DSGGPVVCNGQLQGFVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 265s >sp|Q9P0G3|KLK14_HUMAN Kallikrein-14 precursor (EC 3.4.21.-) (Kallikrein-like protein 6) (KLK-L6) - Homo sapiens (Human). 265s MFLLLTALQVLAIAMTQSQEDENKIIGGHTCTRSSQPWQAALLAGPRRRF 265s LCGGALLSGQWVITAAHCGRPILQVALGKHNLRRWEATQQVLRVVRQVTH 265s PNYNSRTHDNDLMLLQLQQPARIGRAVRPIEVTQACASPGTSCRVSGWGT 265s ISSPIARYPASLQCVNINISPDEVCQKAYPRTITPGMVCAGVPQGGKDSC 265s QGDSGGPLVCRGQLQGLVSWGMERCALPGYPGVYTNLCKYRSWIEETMRD 265s K 265s >sp|P00763|TRY2_RAT Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Rattus norvegicus (Rat). 265s MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGG 265s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFD 265s RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSS 265s GVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDS 265s GGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 265s >sp|P07146|TRY2_MOUSE Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Mus musculus (Mouse). 265s MSALLILALVGAAVAFPVDDDDKIVGGYTCRESSVPYQVSLNAGYHFCGG 265s SLINDQWVVSAAHCYKYRIQVRLGEHNINVLEGNEQFVDSAKIIRHPNYN 265s SWTLDNDIMLIKLASPVTLNARVASVPLPSSCAPAGTQCLISGWGNTLSN 265s GVNNPDLLQCVDAPVLPQADCEASYPGDITNNMICVGFLEGGKDSCQGDS 265s GGPVVCNGELQGIVSWGYGCAQPDAPGVYTKVCNYVDWIQNTIADN 265s >sp|P35030|TRY3_HUMAN Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Brain trypsinogen) (Mesotrypsinogen) (Trypsin IV) - Homo sapiens (Human). 265s MCGPDDRCPARWPGPGRAVKCGKGLAAARPGRVERGGAQRGGAGLELHPL 265s LGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPYQVSLNS 265s GSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKI 265s IRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISG 265s WGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGK 265s DSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 265s AANS 265s >sp|Q7JIG6|KLK15_SAGOE Kallikrein-15 precursor (EC 3.4.21.-) - Saguinus oedipus (Cotton-top tamarin). 265s MWLLLPLSFLLTSTAQDGGKLLEGEECAPHSQPWQVALYERGRFNCGASL 265s ISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTASRVIPHPRYEAR 265s SHRHDIMLLRLVQPARLTPQVRPVVLPTRCPHPGEACVVSGWGLVSHNEP 265s GTTGRPQSQVSLPDTLHCANISIISDASCDKNYPGRLTNTMVCAGAEGRG 265s AESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCRYVKWIRE 265s TMKRN 265s >sp_vs|P35030-2|P35030 Isoform B of P35030 265s MELHPLLGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPY 265s QVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQF 265s INAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGT 265s ECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 265s FLEGGKDSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVD 265s WIKDTIAANS 265s >sp_vs|P35030-3|P35030 Isoform C of P35030 265s MNPFLILAFVGAAVAVPFDDDDKIVGGYTCEENSLPYQVSLNSGSHFCGG 265s SLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYN 265s RDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSF 265s GADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDS 265s GGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAANS 265s >sp|P11032|GRAA_MOUSE Granzyme A precursor (EC 3.4.21.78) (T cell-specific serine protease 1) (TSP-1) (CTLA-3) (Fragmentin-1) (Autocrine thymic lymphoma granzyme-like serine protease) - Mus musculus (Mouse). 265s MRNASGPRGPSLATLLFLLLIPEGGCERIIGGDTVVPHSRPYMALLKLSS 265s NTICAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAF 265s PYPCYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVA 265s GWGRFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDL 265s RGGKDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLN 265s WIKKIMKGSV 265s >sp_vs|P11032-2|P11032 Isoform HF2 of P11032 265s MSKEMNEILLSWEINLSSKRGGCERIIGGDTVVPHSRPYMALLKLSSNTI 265s CAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAFPYP 265s CYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVAGWG 265s RFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDLRGG 265s KDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLNWIK 265s KIMKGSV 265s >sp|P06871|TRY1_CANFA Cationic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 265s MKTFIFLALLGATVAFPIDDDDKIVGGYTCSRNSVPYQVSLNSGYHFCGG 265s SLINSQWVVSAAHCYKSRIQVRLGEYNIAVSEGGEQFINAAKIIRHPRYN 265s ANTIDNDIMLIKLSSPATLNSRVSAIALPKSCPAAGTQCLISGWGNTQSI 265s GQNYPDVLQCLKAPILSDSVCRNAYPGQISSNMMCLGYMEGGKDSCQGDS 265s GGPVVCNGELQGVVSWGAGCAQKGKPGVSPKVCKYVSWIQQTIAAN 265s >sp|P07478|TRY2_HUMAN Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Anionic trypsinogen) - Homo sapiens (Human). 265s MNLLLILTFVAAAVAAPFDDDDKIVGGYICEENSVPYQVSLNSGYHFCGG 265s SLISEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPKYN 265s SRTLDNDILLIKLSSPAVINSRVSAISLPTAPPAAGTESLISGWGNTLSS 265s GADYPDELQCLDAPVLSQAECEASYPGKITNNMFCVGFLEGGKDSCQGDS 265s GGPVVSNGELQGIVSWGYGCAQKNRPGVYTKVYNYVDWIKDTIAANS 265s >sp|P19799|TRY1_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 265s MKFLLLCVLLGAAAAFDDDKIIGGATCAKSSVPYIVSLNSGYHFCGGSLI 265s TNQWVVSAAHCYKASIQVRLGEHNIALSEGTEQFISSSKVIRHSGYNSYT 265s LDNDIMLIKLSSPASLNAAVNTVPLPSGCSAAGTSCLISGWGNTLSNGSN 265s YPDLLQCLNAPILTNAQCNSAYPGEITANMICVGYMEGGKDSCQGDSGGP 265s VVCNGQLQGVVSWGYGCAMRNYPGVYTKVCNYNAWIQNTIAAN 265s >sp|P49864|GRAK_RAT Granzyme K precursor (EC 3.4.21.-) (NK-tryptase-2) (NK-Tryp-2) - Rattus norvegicus (Rat). 265s MSFSSSALVFLVAGIYMSSESFHTEIIGGREVQPHSRPFMASIQYRGKHI 265s CGGVLIHPQWVLTAAHCYSRGHSPTVVLGAHSLSKNEPMKQTFEIKEFIP 265s FSGFKSGTNDIMLIKLRTAAELNKHVQLLHLRSKNYIRDGTKCQVTGWGS 265s TKPDVLTTSDTLQEVTVTIISRKRCNSQSYYNHKPVITKDMICAGDRRGE 265s KDSCKGDSGGPLICKGVFHALVSGGYKCGISNKPGVYTLLTKKYQTWIKS 265s KLAPSSAH 265s >sp|Q90629|TRY3_CHICK Trypsin II-P29 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 265s MKFLFLILSCLGAAVAFPGGADDDKIVGGYTCPEHSVPYQVSLNSGYHFC 265s GGSLINSQWVLSAAHCYKSRIQVRLGEYNIDVQEDSEVVRSSSVIIRHPK 265s YSSITLNNDIMLIKLASAVEYSADIQPIALPSSCAKAGTECLISGWGNTL 265s SNGYNYPELLQCLNAPILSDQECQEAYPGDITSNMICVGFLEGGKDSCQG 265s DSGGPVVCNGELQGIVSWGIGCALKGYPGVYTKVCNYVDWIQETIAAY 265s >sp|P49863|GRAK_HUMAN Granzyme K precursor (EC 3.4.21.-) (Granzyme-3) (NK-tryptase-2) (NK- TRYP-2) (Fragmentin-3) - Homo sapiens (Human). 265s MTKFSSFSLFFLIVGAYMTHVCFNMEIIGGKEVSPHSRPFMASIQYGGHH 265s VCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIK 265s KFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCK 265s VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCA 265s GDAKGQKDSCKGDSGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKY 265s QTWIKSNLVPPHTN 265s >sp|O35205|GRAK_MOUSE Granzyme K precursor (EC 3.4.21.-) - Mus musculus (Mouse). 265s MRFSSWALVSLVAGVYMSSECFHTEIIGGREVQPHSRPFMASIQYRSKHI 265s CGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKNEPMKQTFEIKK 265s FIPFSRLQSGSASHDIMLIKLRTAAELNKNVQLLHLGSKNYLRDGTKCQV 265s TGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAG 265s DARGQKDSCKGDSGGPLICKGIFHALVSQGYKCGIAKKPGIYTLLTKKYQ 265s TWIKSKLAPSRAH 265s >sp|P32822|TRYB_RAT Trypsin V-B precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 265s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 265s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 265s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 265s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 265s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIQQTVAAN 265s >sp|P00760|TRY1_BOVIN Cationic trypsin precursor (EC 3.4.21.4) (Beta-trypsin) [Contains: Alpha-trypsin chain 1; Alpha-trypsin chain 2] (Fragment) - Bos taurus (Bovine). 265s FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLI 265s NSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT 265s LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTS 265s YPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGP 265s VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 265s >sp|Q92876|KLK6_HUMAN Kallikrein-6 precursor (EC 3.4.21.-) (Protease M) (Neurosin) (Zyme) (SP59) - Homo sapiens (Human). 265s MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSGHLLCGGV 265s LIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDA 265s ASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGD 265s FPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGP 265s LVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 265s >sp|Q9Y5K2|KLK4_HUMAN Kallikrein-4 precursor (EC 3.4.21.-) (Prostase) (Kallikrein-like protein 1) (KLK-L1) (Enamel matrix serine proteinase 1) - Homo sapiens (Human). 265s MATAGNPWGWFLGYLILGVAGSLVSGSCSQIINGEDCSPHSQPWQAALVM 265s ENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEAS 265s LSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLV 265s SGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQK 265s DSCNGDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 265s VQAS 265s >sp|P32821|TRYA_RAT Trypsin V-A precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 265s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 265s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 265s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 265s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 265s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIHQTIAEN 265s >sp|P12788|TRY4_RAT Trypsin-4 precursor (EC 3.4.21.4) (Trypsin IV) (Pretrypsinogen IV) - Rattus norvegicus (Rat). 265s MKISIFFAFLGAAVALPVNDDDKIVGGYTCPKHLVPYQVSLHDGISHQCG 265s GSLISDQWVLSAAHCYKRKLQVRLGEHNIHVLEGGEQFIDAEKIIRHPEY 265s NKDTLDNDIMLIKLKSPAVLNSQVSTVSLPRSCASTDAQCLVSGWGNTVS 265s IGGKYPALLQCLEAPVLSASSCKKSYPGQITSNMFCLGFLEGGKDSCDGD 265s SGGPVVCNGEIQGIVSWGSVCAMRGKPGVYTKVCNYLSWIQETMANN 265s >sp|Q61096|PRTN3_MOUSE Myeloblastin precursor (EC 3.4.21.76) (Proteinase 3) (PR-3) - Mus musculus (Mouse). 265s MSGSYPSPKGIHPFLLLALVVGGAVQASKIVGGHEARPHSRPYVASLQLS 265s RFPGSHFCGGTLIHPRFVLTAAHCLQDISWQLVTVVLGAHDLLSSEPEQQ 265s KFTISQVFQNNYNPEENLNDVLLLQLNRTASLGKEVAVASLPQQDQTLSQ 265s GTQCLAMGWGRLGTQAPTPRVLQELNVTVVTFLCREHNVCTLVPRRAAGI 265s CFGDSGGPLICNGILHGVDSFVIRECASLQFPDFFARVSMYVDWIQNVLR 265s GAEP 265s >sp|P00764|TRYP_SQUAC Trypsin precursor (EC 3.4.21.4) - Squalus acanthias (Spiny dogfish). 265s APDDDDKIVGGYECPKHAAPWTVSLNVGYHFCGGSLIAPGWVVSAAHCYQ 265s RRIQVRLGEHDISANEGDETYIDSSMVIRHPNYSGYDLDNDIMLIKLSKP 265s AALNRNVDLISLPTGCAYAGEMCLISGWGNTMDGAVSGDQLQCLDAPVLS 265s DAECKGAYPGMITNNMMCVGYMEGGKDSCQGDSGGPVVCNGMLQGIVSWG 265s YGCAERDHPGVYTRVCHYVSWIHETIASV 265s >sp|P32038|CFAD_RAT Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) (Endogenous vascular elastase) - Rattus norvegicus (Rat). 265s MHSSVYLVALVVLEAAVCVAQPRGRILGGQEAMAHARPYMASVQVNGTHV 265s CGGTLVDEQWVLSAAHCMDGVTKDEVVQVLLGAHSLSSPEPYKHLYDVQS 265s VVLHPGSRPDSVEDDLMLFKLSHNASLGPHVRPLPLQREDREVKPGTLCD 265s VAGWGVVTHAGRRPDVLQQLTVSIMDRNTCNLRTYHDGAITKNMMCAESN 265s RRDTCRGDSGGPLVCGDAVEAVVTWGSRVCGNRRKPGVFTRVATYVPWIE 265s NVLSGNVSVNVTA 265s >sp|Q7YRZ7|GRAA_BOVIN Granzyme A precursor (EC 3.4.21.78) - Bos taurus (Bovine). 265s MNIPFPFSFPPAICLLLIPGVFPVSCEGIIGGNEVAPHTRRYMALIKGLK 265s LCAGALIKENWVLTAAHCDLKGNPQVILGAHSTSHKEKLDQVFSIKKAIP 265s YPCFDPQTFEGDLQLLQLEGKATMTKAVGILQLPRTEDDVKPHTKCHVAG 265s WGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSMICAGGR 265s KGEDDSCEGDSGSPLICDNVFRGVTSFGKCGNPQKPGIYILLTKKHLNWI 265s KKTIAGAI 268s autopkgtest [17:07:10]: test run-unit-test: -----------------------] 269s run-unit-test PASS 269s autopkgtest [17:07:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 270s autopkgtest [17:07:12]: @@@@@@@@@@@@@@@@@@@@ summary 270s run-unit-test PASS 276s nova [W] Using flock in prodstack6-arm64 276s flock: timeout while waiting to get lock 276s Creating nova instance adt-plucky-arm64-t-coffee-20250315-170241-juju-7f2275-prod-proposed-migration-environment-15-92b6b856-0678-4bc5-9670-a22cd644fc97 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 276s nova [W] Timed out waiting for cef346f6-5659-42a2-88c0-44d798d860a1 to get deleted.