0s autopkgtest [16:41:20]: starting date and time: 2025-03-15 16:41:20+0000 1s autopkgtest [16:41:21]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 1s autopkgtest [16:41:21]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j5zx_x7q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade seqan-raptor --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-29.secgroup --name adt-plucky-arm64-seqan-raptor-20250315-164119-juju-7f2275-prod-proposed-migration-environment-15-e0e829be-7828-4b3e-b8ef-89bfd9d14be7 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 174s autopkgtest [16:44:14]: testbed dpkg architecture: arm64 174s autopkgtest [16:44:14]: testbed apt version: 2.9.33 175s autopkgtest [16:44:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 175s autopkgtest [16:44:15]: testbed release detected to be: None 176s autopkgtest [16:44:16]: updating testbed package index (apt update) 176s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 176s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 177s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 177s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 177s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 177s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 177s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 177s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 177s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 177s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 177s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 178s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 178s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 178s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 178s Fetched 1078 kB in 2s (611 kB/s) 179s Reading package lists... 179s + lsb_release --codename --short 179s + RELEASE=plucky 179s + cat 179s + [ plucky != trusty ] 179s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Calculating upgrade... 180s Calculating upgrade... 181s The following packages will be upgraded: 181s pinentry-curses python3-jinja2 strace 181s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 647 kB of archives. 181s After this operation, 11.3 kB of additional disk space will be used. 181s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 182s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 182s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 182s Fetched 647 kB in 1s (632 kB/s) 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 183s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 183s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 183s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 183s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 183s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 183s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 183s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 183s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 184s Setting up strace (6.13+ds-1ubuntu1) ... 184s Processing triggers for man-db (2.13.0-1) ... 184s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 184s + /usr/lib/apt/apt-helper analyze-pattern ?true 184s + uname -r 184s + sed s/\./\\./g 184s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 184s + apt list ?obsolete 184s + tail -n+2 184s + + grep -v ^linux-.*6\.14\.0-10-generic.*cut 184s -d/ -f1 185s + obsolete_pkgs=linux-headers-6.11.0-8-generic 185s linux-headers-6.11.0-8 185s linux-image-6.11.0-8-generic 185s linux-modules-6.11.0-8-generic 185s linux-tools-6.11.0-8-generic 185s linux-tools-6.11.0-8 185s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s Solving dependencies... 186s The following packages will be REMOVED: 186s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 186s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 186s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 186s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 186s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 186s After this operation, 267 MB disk space will be freed. 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 187s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 187s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 187s Removing libpython3.12t64:arm64 (3.12.9-1) ... 187s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 187s Removing libnsl2:arm64 (1.3.0-3build3) ... 187s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 187s Removing libunwind8:arm64 (1.6.2-3.1) ... 187s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 187s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 189s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 190s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 190s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 190s /etc/kernel/postrm.d/initramfs-tools: 190s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 190s /etc/kernel/postrm.d/zz-flash-kernel: 190s flash-kernel: Kernel 6.11.0-8-generic has been removed. 190s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 190s /etc/kernel/postrm.d/zz-update-grub: 190s Sourcing file `/etc/default/grub' 190s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 190s Generating grub configuration file ... 190s Found linux image: /boot/vmlinuz-6.14.0-10-generic 191s Found initrd image: /boot/initrd.img-6.14.0-10-generic 191s Warning: os-prober will not be executed to detect other bootable partitions. 191s Systems on them will not be added to the GRUB boot configuration. 191s Check GRUB_DISABLE_OS_PROBER documentation entry. 191s Adding boot menu entry for UEFI Firmware Settings ... 191s done 191s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 192s Processing triggers for libc-bin (2.41-1ubuntu1) ... 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 192s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 192s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 192s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 192s + grep -q trusty /etc/lsb-release 192s + [ ! -d /usr/share/doc/unattended-upgrades ] 192s + [ ! -d /usr/share/doc/lxd ] 192s + [ ! -d /usr/share/doc/lxd-client ] 192s + [ ! -d /usr/share/doc/snapd ] 192s + type iptables 192s + cat 192s + chmod 755 /etc/rc.local 192s + . /etc/rc.local 192s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 192s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 192s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 192s + uname -m 192s + [ aarch64 = ppc64le ] 192s + [ -d /run/systemd/system ] 192s + systemd-detect-virt --quiet --vm 192s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 192s + cat 192s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 192s + echo COMPRESS=lz4 193s autopkgtest [16:44:33]: upgrading testbed (apt dist-upgrade and autopurge) 193s Reading package lists... 193s Building dependency tree... 193s Reading state information... 194s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 194s Starting 2 pkgProblemResolver with broken count: 0 194s Done 195s Entering ResolveByKeep 195s 195s Calculating upgrade... 196s The following packages will be upgraded: 196s libc-bin libc-dev-bin libc6 libc6-dev locales 196s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 9530 kB of archives. 196s After this operation, 0 B of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 198s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 201s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 201s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 206s Preconfiguring packages ... 207s Fetched 9530 kB in 10s (926 kB/s) 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 207s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 207s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 207s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 207s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 207s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 207s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 208s Setting up libc6:arm64 (2.41-1ubuntu2) ... 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 208s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 208s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 208s Setting up libc-bin (2.41-1ubuntu2) ... 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 208s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 208s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Setting up locales (2.41-1ubuntu2) ... 210s Generating locales (this might take a while)... 212s en_US.UTF-8... done 212s Generation complete. 213s Setting up libc-dev-bin (2.41-1ubuntu2) ... 213s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 213s Processing triggers for man-db (2.13.0-1) ... 214s Processing triggers for systemd (257.3-1ubuntu3) ... 214s Reading package lists... 215s Building dependency tree... 215s Reading state information... 215s Starting pkgProblemResolver with broken count: 0 215s Starting 2 pkgProblemResolver with broken count: 0 215s Done 216s Solving dependencies... 216s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s autopkgtest [16:44:56]: rebooting testbed after setup commands that affected boot 241s autopkgtest [16:45:21]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 245s autopkgtest [16:45:25]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-raptor 251s Get:1 http://ftpmaster.internal/ubuntu plucky/universe seqan-raptor 3.0.1+ds-9 (dsc) [2694 B] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/universe seqan-raptor 3.0.1+ds-9 (tar) [3085 kB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/universe seqan-raptor 3.0.1+ds-9 (diff) [10.8 kB] 251s gpgv: Signature made Tue Feb 11 17:04:26 2025 UTC 251s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 251s gpgv: Can't check signature: No public key 251s dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-9.dsc: no acceptable signature found 251s autopkgtest [16:45:31]: testing package seqan-raptor version 3.0.1+ds-9 252s autopkgtest [16:45:32]: build not needed 255s autopkgtest [16:45:35]: test cwl: preparing testbed 256s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Starting pkgProblemResolver with broken count: 0 256s Starting 2 pkgProblemResolver with broken count: 0 256s Done 257s The following NEW packages will be installed: 257s cwl-upgrader cwltool fontconfig fontconfig-config fonts-dejavu-core 257s fonts-dejavu-mono fonts-glyphicons-halflings graphviz libann0 libaom3 257s libcairo2 libcares2 libcdt5 libcgraph6 libdatrie1 libde265-0 libdeflate0 257s libfontconfig1 libgd3 libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 257s libgvpr2 libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265 257s libheif1 libice6 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 257s libjs-bootstrap liblab-gamut1 liblerc4 libltdl7 libnode115 libpango-1.0-0 257s libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libraqm0 257s libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 libwebp7 libxaw7 257s libxcb-render0 libxcb-shm0 libxmu6 libxpm4 libxrender1 libxslt1.1 libxt6t64 257s libyaml-cpp0.8 node-acorn node-balanced-match node-brace-expansion 257s node-cjs-module-lexer node-minimatch node-undici node-xtend nodejs 257s python3-arcp python3-argcomplete python3-cachecontrol python3-coloredlogs 257s python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly 257s python3-lxml python3-mistune python3-msgpack python3-mypy-extensions 257s python3-networkx python3-packaging python3-prov python3-psutil python3-pydot 257s python3-rdflib python3-rich-argparse python3-ruamel.yaml 257s python3-ruamel.yaml.clib python3-schema-salad python3-spython seqan-raptor 257s seqan-raptor-doc x11-common 257s 0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded. 257s Need to get 43.6 MB of archives. 257s After this operation, 211 MB of additional disk space will be used. 257s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml.clib arm64 0.2.12+ds-1build1 [138 kB] 258s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 258s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-msgpack arm64 1.0.3-3build4 [82.7 kB] 258s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cachecontrol all 0.14.2-1 [18.7 kB] 258s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mistune all 3.0.2-2 [32.9 kB] 258s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-mypy-extensions all 1.0.0-1 [6148 B] 258s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rdflib all 7.1.1-2 [426 kB] 259s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-filelock all 3.17.0-1 [13.0 kB] 259s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 259s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 259s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-schema-salad arm64 8.8.20241206093842-2build1 [1142 kB] 260s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 cwl-upgrader all 1.2.12-1 [16.0 kB] 260s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-argcomplete all 3.5.3-1 [35.6 kB] 260s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-humanfriendly all 10.0-6 [70.8 kB] 260s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 260s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 260s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-cwl-utils all 0.36-1 [126 kB] 261s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 261s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 261s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lxml arm64 5.3.1-1build1 [1258 kB] 262s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 276s Get:22 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-prov all 2.0.1-1 [95.5 kB] 276s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-psutil arm64 5.9.8-2build3 [196 kB] 276s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libann0 arm64 1.1.2+doc-9build1 [25.7 kB] 276s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcdt5 arm64 2.42.4-3 [21.1 kB] 276s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcgraph6 arm64 2.42.4-3 [45.0 kB] 276s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 277s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 278s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 278s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 278s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 278s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.12.0-1 [1828 kB] 280s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.19.7-1 [11.4 kB] 280s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build5 [146 kB] 280s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.19.7-1 [8890 B] 280s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.19.7-1 [371 kB] 281s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 281s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 281s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 281s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 281s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 281s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 282s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 282s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 282s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 282s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 282s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 282s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 283s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 283s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgd3 arm64 2.3.3-12ubuntu3 [122 kB] 283s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgts-0.7-5t64 arm64 0.7.6+darcs121130-5.2build1 [154 kB] 283s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 283s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 283s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 283s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 283s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 284s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 284s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 284s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 284s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 284s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 284s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 285s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 285s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 285s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpathplan4 arm64 2.42.4-3 [23.3 kB] 285s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgvc6 arm64 2.42.4-3 [706 kB] 286s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgvpr2 arm64 2.42.4-3 [187 kB] 286s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblab-gamut1 arm64 2.42.4-3 [1846 kB] 288s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 288s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 288s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 288s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 288s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 288s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 288s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 graphviz arm64 2.42.4-3 [621 kB] 289s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pydot all 2.0.0-3 [24.9 kB] 289s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-rich-argparse all 1.6.0-2 [17.2 kB] 289s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-spython all 0.3.13-2 [56.2 kB] 289s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-arcp all 0.2.1-7 [13.9 kB] 289s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 cwltool all 3.1.20250110105449-3 [532 kB] 289s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libcares2 arm64 1.34.4-2.1 [100 kB] 289s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-xtend all 4.0.2-3 [3902 B] 290s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 nodejs arm64 20.18.1+dfsg-1ubuntu2 [335 kB] 290s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 290s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 290s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-balanced-match all 2.0.0-1 [4910 B] 290s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-brace-expansion all 2.0.1+~1.1.0-1 [8072 B] 290s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-minimatch all 9.0.3-5 [78.2 kB] 290s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-undici all 7.3.0+dfsg1+~cs24.12.11-1 [341 kB] 291s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnode115 arm64 20.18.1+dfsg-1ubuntu2 [12.8 MB] 305s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-7 [112 kB] 305s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 seqan-raptor arm64 3.0.1+ds-9 [682 kB] 306s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 seqan-raptor-doc all 3.0.1+ds-9 [1225 kB] 307s Fetched 43.6 MB in 50s (880 kB/s) 307s Selecting previously unselected package python3-ruamel.yaml.clib. 308s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 308s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.12+ds-1build1_arm64.deb ... 308s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 308s Selecting previously unselected package python3-ruamel.yaml. 308s Preparing to unpack .../01-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 308s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 308s Selecting previously unselected package python3-msgpack. 308s Preparing to unpack .../02-python3-msgpack_1.0.3-3build4_arm64.deb ... 308s Unpacking python3-msgpack (1.0.3-3build4) ... 308s Selecting previously unselected package python3-cachecontrol. 308s Preparing to unpack .../03-python3-cachecontrol_0.14.2-1_all.deb ... 308s Unpacking python3-cachecontrol (0.14.2-1) ... 308s Selecting previously unselected package python3-mistune. 308s Preparing to unpack .../04-python3-mistune_3.0.2-2_all.deb ... 308s Unpacking python3-mistune (3.0.2-2) ... 308s Selecting previously unselected package python3-mypy-extensions. 308s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 308s Unpacking python3-mypy-extensions (1.0.0-1) ... 308s Selecting previously unselected package python3-rdflib. 308s Preparing to unpack .../06-python3-rdflib_7.1.1-2_all.deb ... 308s Unpacking python3-rdflib (7.1.1-2) ... 308s Selecting previously unselected package python3-filelock. 308s Preparing to unpack .../07-python3-filelock_3.17.0-1_all.deb ... 308s Unpacking python3-filelock (3.17.0-1) ... 308s Selecting previously unselected package fonts-glyphicons-halflings. 308s Preparing to unpack .../08-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 308s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 308s Selecting previously unselected package libjs-bootstrap. 308s Preparing to unpack .../09-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 308s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 308s Selecting previously unselected package python3-schema-salad. 308s Preparing to unpack .../10-python3-schema-salad_8.8.20241206093842-2build1_arm64.deb ... 308s Unpacking python3-schema-salad (8.8.20241206093842-2build1) ... 308s Selecting previously unselected package cwl-upgrader. 308s Preparing to unpack .../11-cwl-upgrader_1.2.12-1_all.deb ... 308s Unpacking cwl-upgrader (1.2.12-1) ... 308s Selecting previously unselected package python3-argcomplete. 308s Preparing to unpack .../12-python3-argcomplete_3.5.3-1_all.deb ... 308s Unpacking python3-argcomplete (3.5.3-1) ... 308s Selecting previously unselected package python3-humanfriendly. 308s Preparing to unpack .../13-python3-humanfriendly_10.0-6_all.deb ... 308s Unpacking python3-humanfriendly (10.0-6) ... 308s Selecting previously unselected package python3-coloredlogs. 308s Preparing to unpack .../14-python3-coloredlogs_15.0.1-1_all.deb ... 308s Unpacking python3-coloredlogs (15.0.1-1) ... 308s Selecting previously unselected package python3-packaging. 308s Preparing to unpack .../15-python3-packaging_24.2-1_all.deb ... 308s Unpacking python3-packaging (24.2-1) ... 308s Selecting previously unselected package python3-cwl-utils. 308s Preparing to unpack .../16-python3-cwl-utils_0.36-1_all.deb ... 308s Unpacking python3-cwl-utils (0.36-1) ... 308s Selecting previously unselected package python3-dateutil. 308s Preparing to unpack .../17-python3-dateutil_2.9.0-3_all.deb ... 308s Unpacking python3-dateutil (2.9.0-3) ... 308s Selecting previously unselected package libxslt1.1:arm64. 308s Preparing to unpack .../18-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 308s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 308s Selecting previously unselected package python3-lxml:arm64. 309s Preparing to unpack .../19-python3-lxml_5.3.1-1build1_arm64.deb ... 309s Unpacking python3-lxml:arm64 (5.3.1-1build1) ... 309s Selecting previously unselected package python3-networkx. 309s Preparing to unpack .../20-python3-networkx_3.2.1-4ubuntu1_all.deb ... 309s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 309s Selecting previously unselected package python3-prov. 309s Preparing to unpack .../21-python3-prov_2.0.1-1_all.deb ... 309s Unpacking python3-prov (2.0.1-1) ... 309s Selecting previously unselected package python3-psutil. 309s Preparing to unpack .../22-python3-psutil_5.9.8-2build3_arm64.deb ... 309s Unpacking python3-psutil (5.9.8-2build3) ... 309s Selecting previously unselected package libann0. 309s Preparing to unpack .../23-libann0_1.1.2+doc-9build1_arm64.deb ... 309s Unpacking libann0 (1.1.2+doc-9build1) ... 309s Selecting previously unselected package libcdt5:arm64. 309s Preparing to unpack .../24-libcdt5_2.42.4-3_arm64.deb ... 309s Unpacking libcdt5:arm64 (2.42.4-3) ... 309s Selecting previously unselected package libcgraph6:arm64. 309s Preparing to unpack .../25-libcgraph6_2.42.4-3_arm64.deb ... 309s Unpacking libcgraph6:arm64 (2.42.4-3) ... 309s Selecting previously unselected package fonts-dejavu-mono. 310s Preparing to unpack .../26-fonts-dejavu-mono_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-mono (2.37-8) ... 310s Selecting previously unselected package fonts-dejavu-core. 310s Preparing to unpack .../27-fonts-dejavu-core_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-core (2.37-8) ... 310s Selecting previously unselected package fontconfig-config. 310s Preparing to unpack .../28-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 310s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 310s Selecting previously unselected package libfontconfig1:arm64. 310s Preparing to unpack .../29-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 310s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 310s Selecting previously unselected package libsharpyuv0:arm64. 310s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_arm64.deb ... 310s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 310s Selecting previously unselected package libaom3:arm64. 310s Preparing to unpack .../31-libaom3_3.12.0-1_arm64.deb ... 310s Unpacking libaom3:arm64 (3.12.0-1) ... 310s Selecting previously unselected package libheif-plugin-aomdec:arm64. 310s Preparing to unpack .../32-libheif-plugin-aomdec_1.19.7-1_arm64.deb ... 310s Unpacking libheif-plugin-aomdec:arm64 (1.19.7-1) ... 310s Selecting previously unselected package libde265-0:arm64. 310s Preparing to unpack .../33-libde265-0_1.0.15-1build5_arm64.deb ... 310s Unpacking libde265-0:arm64 (1.0.15-1build5) ... 310s Selecting previously unselected package libheif-plugin-libde265:arm64. 310s Preparing to unpack .../34-libheif-plugin-libde265_1.19.7-1_arm64.deb ... 310s Unpacking libheif-plugin-libde265:arm64 (1.19.7-1) ... 310s Selecting previously unselected package libheif1:arm64. 310s Preparing to unpack .../35-libheif1_1.19.7-1_arm64.deb ... 310s Unpacking libheif1:arm64 (1.19.7-1) ... 310s Selecting previously unselected package libgomp1:arm64. 310s Preparing to unpack .../36-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 310s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 310s Selecting previously unselected package libimagequant0:arm64. 310s Preparing to unpack .../37-libimagequant0_2.18.0-1build1_arm64.deb ... 310s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 310s Selecting previously unselected package libjpeg-turbo8:arm64. 310s Preparing to unpack .../38-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 310s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 310s Selecting previously unselected package libjpeg8:arm64. 310s Preparing to unpack .../39-libjpeg8_8c-2ubuntu11_arm64.deb ... 310s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 310s Selecting previously unselected package libgraphite2-3:arm64. 310s Preparing to unpack .../40-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 310s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 310s Selecting previously unselected package libharfbuzz0b:arm64. 310s Preparing to unpack .../41-libharfbuzz0b_10.2.0-1_arm64.deb ... 310s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 310s Selecting previously unselected package libraqm0:arm64. 310s Preparing to unpack .../42-libraqm0_0.10.2-1_arm64.deb ... 310s Unpacking libraqm0:arm64 (0.10.2-1) ... 310s Selecting previously unselected package libdeflate0:arm64. 310s Preparing to unpack .../43-libdeflate0_1.23-1_arm64.deb ... 310s Unpacking libdeflate0:arm64 (1.23-1) ... 310s Selecting previously unselected package libjbig0:arm64. 310s Preparing to unpack .../44-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 310s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 310s Selecting previously unselected package liblerc4:arm64. 311s Preparing to unpack .../45-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 311s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 311s Selecting previously unselected package libwebp7:arm64. 311s Preparing to unpack .../46-libwebp7_1.5.0-0.1_arm64.deb ... 311s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 311s Selecting previously unselected package libtiff6:arm64. 311s Preparing to unpack .../47-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 311s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 311s Selecting previously unselected package libxpm4:arm64. 311s Preparing to unpack .../48-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 311s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 311s Selecting previously unselected package libgd3:arm64. 311s Preparing to unpack .../49-libgd3_2.3.3-12ubuntu3_arm64.deb ... 311s Unpacking libgd3:arm64 (2.3.3-12ubuntu3) ... 311s Selecting previously unselected package libgts-0.7-5t64:arm64. 311s Preparing to unpack .../50-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_arm64.deb ... 311s Unpacking libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 311s Selecting previously unselected package libpixman-1-0:arm64. 311s Preparing to unpack .../51-libpixman-1-0_0.44.0-3_arm64.deb ... 311s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 311s Selecting previously unselected package libxcb-render0:arm64. 311s Preparing to unpack .../52-libxcb-render0_1.17.0-2_arm64.deb ... 311s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 311s Selecting previously unselected package libxcb-shm0:arm64. 311s Preparing to unpack .../53-libxcb-shm0_1.17.0-2_arm64.deb ... 311s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 311s Selecting previously unselected package libxrender1:arm64. 311s Preparing to unpack .../54-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 311s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 311s Selecting previously unselected package libcairo2:arm64. 311s Preparing to unpack .../55-libcairo2_1.18.2-2_arm64.deb ... 311s Unpacking libcairo2:arm64 (1.18.2-2) ... 311s Selecting previously unselected package libltdl7:arm64. 311s Preparing to unpack .../56-libltdl7_2.5.4-4_arm64.deb ... 311s Unpacking libltdl7:arm64 (2.5.4-4) ... 311s Selecting previously unselected package fontconfig. 311s Preparing to unpack .../57-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 311s Unpacking fontconfig (2.15.0-2ubuntu1) ... 311s Selecting previously unselected package libthai-data. 311s Preparing to unpack .../58-libthai-data_0.1.29-2build1_all.deb ... 311s Unpacking libthai-data (0.1.29-2build1) ... 311s Selecting previously unselected package libdatrie1:arm64. 311s Preparing to unpack .../59-libdatrie1_0.2.13-3build1_arm64.deb ... 311s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 311s Selecting previously unselected package libthai0:arm64. 311s Preparing to unpack .../60-libthai0_0.1.29-2build1_arm64.deb ... 311s Unpacking libthai0:arm64 (0.1.29-2build1) ... 311s Selecting previously unselected package libpango-1.0-0:arm64. 311s Preparing to unpack .../61-libpango-1.0-0_1.56.2-1_arm64.deb ... 311s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 311s Selecting previously unselected package libpangoft2-1.0-0:arm64. 311s Preparing to unpack .../62-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 311s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 311s Selecting previously unselected package libpangocairo-1.0-0:arm64. 311s Preparing to unpack .../63-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 311s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 311s Selecting previously unselected package libpathplan4:arm64. 311s Preparing to unpack .../64-libpathplan4_2.42.4-3_arm64.deb ... 311s Unpacking libpathplan4:arm64 (2.42.4-3) ... 311s Selecting previously unselected package libgvc6. 311s Preparing to unpack .../65-libgvc6_2.42.4-3_arm64.deb ... 311s Unpacking libgvc6 (2.42.4-3) ... 311s Selecting previously unselected package libgvpr2:arm64. 311s Preparing to unpack .../66-libgvpr2_2.42.4-3_arm64.deb ... 311s Unpacking libgvpr2:arm64 (2.42.4-3) ... 311s Selecting previously unselected package liblab-gamut1:arm64. 311s Preparing to unpack .../67-liblab-gamut1_2.42.4-3_arm64.deb ... 311s Unpacking liblab-gamut1:arm64 (2.42.4-3) ... 311s Selecting previously unselected package x11-common. 311s Preparing to unpack .../68-x11-common_1%3a7.7+23ubuntu3_all.deb ... 311s Unpacking x11-common (1:7.7+23ubuntu3) ... 311s Selecting previously unselected package libice6:arm64. 311s Preparing to unpack .../69-libice6_2%3a1.1.1-1_arm64.deb ... 311s Unpacking libice6:arm64 (2:1.1.1-1) ... 311s Selecting previously unselected package libsm6:arm64. 311s Preparing to unpack .../70-libsm6_2%3a1.2.4-1_arm64.deb ... 311s Unpacking libsm6:arm64 (2:1.2.4-1) ... 311s Selecting previously unselected package libxt6t64:arm64. 312s Preparing to unpack .../71-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 312s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 312s Selecting previously unselected package libxmu6:arm64. 312s Preparing to unpack .../72-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 312s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 312s Selecting previously unselected package libxaw7:arm64. 312s Preparing to unpack .../73-libxaw7_2%3a1.0.16-1_arm64.deb ... 312s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 312s Selecting previously unselected package graphviz. 312s Preparing to unpack .../74-graphviz_2.42.4-3_arm64.deb ... 312s Unpacking graphviz (2.42.4-3) ... 312s Selecting previously unselected package python3-pydot. 312s Preparing to unpack .../75-python3-pydot_2.0.0-3_all.deb ... 312s Unpacking python3-pydot (2.0.0-3) ... 312s Selecting previously unselected package python3-rich-argparse. 312s Preparing to unpack .../76-python3-rich-argparse_1.6.0-2_all.deb ... 312s Unpacking python3-rich-argparse (1.6.0-2) ... 312s Selecting previously unselected package python3-spython. 312s Preparing to unpack .../77-python3-spython_0.3.13-2_all.deb ... 312s Unpacking python3-spython (0.3.13-2) ... 312s Selecting previously unselected package python3-arcp. 312s Preparing to unpack .../78-python3-arcp_0.2.1-7_all.deb ... 312s Unpacking python3-arcp (0.2.1-7) ... 312s Selecting previously unselected package cwltool. 312s Preparing to unpack .../79-cwltool_3.1.20250110105449-3_all.deb ... 312s Unpacking cwltool (3.1.20250110105449-3) ... 312s Selecting previously unselected package libcares2:arm64. 312s Preparing to unpack .../80-libcares2_1.34.4-2.1_arm64.deb ... 312s Unpacking libcares2:arm64 (1.34.4-2.1) ... 312s Selecting previously unselected package node-xtend. 312s Preparing to unpack .../81-node-xtend_4.0.2-3_all.deb ... 312s Unpacking node-xtend (4.0.2-3) ... 312s Selecting previously unselected package nodejs. 312s Preparing to unpack .../82-nodejs_20.18.1+dfsg-1ubuntu2_arm64.deb ... 312s Unpacking nodejs (20.18.1+dfsg-1ubuntu2) ... 312s Selecting previously unselected package node-acorn. 312s Preparing to unpack .../83-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 312s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 312s Selecting previously unselected package node-cjs-module-lexer. 312s Preparing to unpack .../84-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 312s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 312s Selecting previously unselected package node-balanced-match. 312s Preparing to unpack .../85-node-balanced-match_2.0.0-1_all.deb ... 312s Unpacking node-balanced-match (2.0.0-1) ... 312s Selecting previously unselected package node-brace-expansion. 312s Preparing to unpack .../86-node-brace-expansion_2.0.1+~1.1.0-1_all.deb ... 312s Unpacking node-brace-expansion (2.0.1+~1.1.0-1) ... 312s Selecting previously unselected package node-minimatch. 312s Preparing to unpack .../87-node-minimatch_9.0.3-5_all.deb ... 312s Unpacking node-minimatch (9.0.3-5) ... 312s Selecting previously unselected package node-undici. 312s Preparing to unpack .../88-node-undici_7.3.0+dfsg1+~cs24.12.11-1_all.deb ... 312s Unpacking node-undici (7.3.0+dfsg1+~cs24.12.11-1) ... 312s Selecting previously unselected package libnode115:arm64. 312s Preparing to unpack .../89-libnode115_20.18.1+dfsg-1ubuntu2_arm64.deb ... 312s Unpacking libnode115:arm64 (20.18.1+dfsg-1ubuntu2) ... 313s Selecting previously unselected package libyaml-cpp0.8:arm64. 313s Preparing to unpack .../90-libyaml-cpp0.8_0.8.0+dfsg-7_arm64.deb ... 313s Unpacking libyaml-cpp0.8:arm64 (0.8.0+dfsg-7) ... 313s Selecting previously unselected package seqan-raptor. 313s Preparing to unpack .../91-seqan-raptor_3.0.1+ds-9_arm64.deb ... 313s Unpacking seqan-raptor (3.0.1+ds-9) ... 313s Selecting previously unselected package seqan-raptor-doc. 313s Preparing to unpack .../92-seqan-raptor-doc_3.0.1+ds-9_all.deb ... 313s Unpacking seqan-raptor-doc (3.0.1+ds-9) ... 313s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 313s Setting up python3-arcp (0.2.1-7) ... 313s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 313s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 313s Setting up libaom3:arm64 (3.12.0-1) ... 313s Setting up python3-filelock (3.17.0-1) ... 313s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 313s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 313s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 313s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 313s Setting up libxcb-render0:arm64 (1.17.0-2) ... 313s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 313s Setting up python3-mypy-extensions (1.0.0-1) ... 313s Setting up libyaml-cpp0.8:arm64 (0.8.0+dfsg-7) ... 313s Setting up liblab-gamut1:arm64 (2.42.4-3) ... 313s Setting up python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 313s Setting up x11-common (1:7.7+23ubuntu3) ... 314s Setting up libdeflate0:arm64 (1.23-1) ... 314s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 314s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 314s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 314s Setting up python3-networkx (3.2.1-4ubuntu1) ... 315s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 315s Setting up python3-psutil (5.9.8-2build3) ... 315s Setting up python3-packaging (24.2-1) ... 315s Setting up python3-humanfriendly (10.0-6) ... 316s Setting up python3-spython (0.3.13-2) ... 316s Setting up node-balanced-match (2.0.0-1) ... 316s Setting up node-brace-expansion (2.0.1+~1.1.0-1) ... 316s Setting up libpathplan4:arm64 (2.42.4-3) ... 316s Setting up libann0 (1.1.2+doc-9build1) ... 316s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 316s Setting up fonts-dejavu-mono (2.37-8) ... 316s Setting up libcares2:arm64 (1.34.4-2.1) ... 316s Setting up fonts-dejavu-core (2.37-8) ... 316s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 316s Setting up libltdl7:arm64 (2.5.4-4) ... 316s Setting up libwebp7:arm64 (1.5.0-0.1) ... 316s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 316s Setting up node-undici (7.3.0+dfsg1+~cs24.12.11-1) ... 316s Setting up python3-rich-argparse (1.6.0-2) ... 316s Setting up python3-rdflib (7.1.1-2) ... 317s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 317s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 317s Setting up libthai-data (0.1.29-2build1) ... 317s Setting up python3-dateutil (2.9.0-3) ... 317s Setting up libgts-0.7-5t64:arm64 (0.7.6+darcs121130-5.2build1) ... 317s Setting up python3-msgpack (1.0.3-3build4) ... 317s Setting up libcdt5:arm64 (2.42.4-3) ... 317s Setting up libcgraph6:arm64 (2.42.4-3) ... 317s Setting up node-minimatch (9.0.3-5) ... 317s Setting up python3-cachecontrol (0.14.2-1) ... 317s Setting up node-xtend (4.0.2-3) ... 317s Setting up seqan-raptor (3.0.1+ds-9) ... 317s Setting up libde265-0:arm64 (1.0.15-1build5) ... 317s Setting up python3-argcomplete (3.5.3-1) ... 318s Setting up python3-coloredlogs (15.0.1-1) ... 318s Setting up seqan-raptor-doc (3.0.1+ds-9) ... 318s Setting up python3-mistune (3.0.2-2) ... 318s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 318s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 318s Setting up libice6:arm64 (2:1.1.1-1) ... 318s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 318s Setting up python3-schema-salad (8.8.20241206093842-2build1) ... 319s Setting up libthai0:arm64 (0.1.29-2build1) ... 319s Setting up cwl-upgrader (1.2.12-1) ... 319s Setting up libraqm0:arm64 (0.10.2-1) ... 319s Setting up libgvpr2:arm64 (2.42.4-3) ... 319s Setting up python3-lxml:arm64 (5.3.1-1build1) ... 319s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 319s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 319s Setting up libsm6:arm64 (2:1.2.4-1) ... 319s Setting up fontconfig (2.15.0-2ubuntu1) ... 321s Regenerating fonts cache... done. 321s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 321s Setting up python3-cwl-utils (0.36-1) ... 324s Setting up libcairo2:arm64 (1.18.2-2) ... 324s Setting up python3-prov (2.0.1-1) ... 324s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 324s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 324s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 324s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 324s Setting up libxaw7:arm64 (2:1.0.16-1) ... 324s Setting up libheif-plugin-aomdec:arm64 (1.19.7-1) ... 324s Setting up libheif-plugin-libde265:arm64 (1.19.7-1) ... 324s Setting up libnode115:arm64 (20.18.1+dfsg-1ubuntu2) ... 324s Setting up libheif1:arm64 (1.19.7-1) ... 324s Setting up nodejs (20.18.1+dfsg-1ubuntu2) ... 324s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 324s Setting up libgd3:arm64 (2.3.3-12ubuntu3) ... 324s Setting up libgvc6 (2.42.4-3) ... 324s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 324s Setting up graphviz (2.42.4-3) ... 324s Setting up python3-pydot (2.0.0-3) ... 325s Setting up cwltool (3.1.20250110105449-3) ... 325s Processing triggers for man-db (2.13.0-1) ... 326s Processing triggers for libc-bin (2.41-1ubuntu2) ... 328s autopkgtest [16:46:48]: test cwl: [----------------------- 328s INFO /usr/bin/cwltool 3.1.20250110105449 328s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 330s INFO [job raptor-build.cwl] /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/ox30m0lf$ raptor \ 330s build \ 330s --input \ 330s input_bins_filepaths.txt \ 330s --output \ 330s 0_bins_window_19.index 330s ============= Timings ============= 330s Wall clock time [s]: 0.00 330s Peak memory usage [MiB]: 73.0 330s Determine IBF size [s]: 0.00 330s Index allocation [s]: 0.00 330s User bin I/O avg per thread [s]: 0.00 330s User bin I/O sum [s]: 0.00 330s Fill IBF avg per thread [s]: 0.00 330s Fill IBF sum [s]: 0.00 330s Store index [s]: 0.00 330s INFO [job raptor-build.cwl] completed success 330s INFO Final process status is success 333s "checksum": "sha1$098169f476fb949b0d08f2d1e05881049819b811", 333s INFO /usr/bin/cwltool 3.1.20250110105449 333s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 333s INFO [job raptor-build.cwl] /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/005vbylh$ raptor \ 333s build \ 333s --input \ 333s input_bins_filepaths.txt \ 333s --output \ 333s 0_bins_window_19.index 333s ============= Timings ============= 333s Wall clock time [s]: 0.01 333s Peak memory usage [MiB]: 73.3 333s Determine IBF size [s]: 0.00 333s Index allocation [s]: 0.00 333s User bin I/O avg per thread [s]: 0.00 333s User bin I/O sum [s]: 0.00 333s Fill IBF avg per thread [s]: 0.00 333s Fill IBF sum [s]: 0.00 333s Store index [s]: 0.00 333s INFO [job raptor-build.cwl] completed success 333s INFO Final process status is success 333s "checksum": "sha1$64a4328eb3dab99bf6ecd38f84f4ae45fd01a4dd", 333s autopkgtest [16:46:53]: test cwl: -----------------------] 334s autopkgtest [16:46:54]: test cwl: - - - - - - - - - - results - - - - - - - - - - 334s cwl PASS 334s autopkgtest [16:46:54]: test run-unit-test: preparing testbed 527s autopkgtest [16:50:07]: testbed dpkg architecture: arm64 528s autopkgtest [16:50:08]: testbed apt version: 2.9.33 528s autopkgtest [16:50:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 529s autopkgtest [16:50:09]: testbed release detected to be: plucky 531s autopkgtest [16:50:11]: updating testbed package index (apt update) 532s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 532s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 532s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 532s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 532s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 532s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 532s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 533s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 533s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 533s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 533s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 533s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 533s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 533s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 534s Fetched 1078 kB in 2s (632 kB/s) 535s Reading package lists... 537s + lsb_release --codename --short 537s + RELEASE=plucky 537s + cat 537s + [ plucky != trusty ] 537s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 537s Reading package lists... 538s Building dependency tree... 538s Reading state information... 539s Calculating upgrade... 539s Calculating upgrade... 540s The following packages will be upgraded: 540s pinentry-curses python3-jinja2 strace 540s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 540s Need to get 647 kB of archives. 540s After this operation, 11.3 kB of additional disk space will be used. 540s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 541s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 541s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 542s Fetched 647 kB in 1s (573 kB/s) 542s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 542s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 542s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 542s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 542s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 543s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 543s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 543s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 543s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 543s Setting up strace (6.13+ds-1ubuntu1) ... 543s Processing triggers for man-db (2.13.0-1) ... 544s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 544s + /usr/lib/apt/apt-helper analyze-pattern ?true 544s + uname -r 544s + sed s/\./\\./g 544s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 544s + apt list ?obsolete 544s + tail -n+2 544s + cut -d/ -f1 544s + grep -v ^linux-.*6\.14\.0-10-generic.* 545s + obsolete_pkgs=linux-headers-6.11.0-8-generic 545s linux-headers-6.11.0-8 545s linux-image-6.11.0-8-generic 545s linux-modules-6.11.0-8-generic 545s linux-tools-6.11.0-8-generic 545s linux-tools-6.11.0-8 545s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 545s Reading package lists... 545s Building dependency tree... 545s Reading state information... 545s Solving dependencies... 546s The following packages will be REMOVED: 546s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 546s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 546s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 546s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 546s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 546s After this operation, 267 MB disk space will be freed. 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 547s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 547s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 547s Removing libpython3.12t64:arm64 (3.12.9-1) ... 547s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 547s Removing libnsl2:arm64 (1.3.0-3build3) ... 547s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 547s Removing libunwind8:arm64 (1.6.2-3.1) ... 547s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 547s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 550s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 550s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 550s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 550s /etc/kernel/postrm.d/initramfs-tools: 550s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 550s /etc/kernel/postrm.d/zz-flash-kernel: 550s flash-kernel: Kernel 6.11.0-8-generic has been removed. 550s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 551s /etc/kernel/postrm.d/zz-update-grub: 551s Sourcing file `/etc/default/grub' 551s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 551s Generating grub configuration file ... 551s Found linux image: /boot/vmlinuz-6.14.0-10-generic 551s Found initrd image: /boot/initrd.img-6.14.0-10-generic 551s Warning: os-prober will not be executed to detect other bootable partitions. 551s Systems on them will not be added to the GRUB boot configuration. 551s Check GRUB_DISABLE_OS_PROBER documentation entry. 551s Adding boot menu entry for UEFI Firmware Settings ... 552s done 552s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 552s Processing triggers for libc-bin (2.41-1ubuntu1) ... 552s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 552s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 552s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 552s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 552s + grep -q trusty /etc/lsb-release 552s + [ ! -d /usr/share/doc/unattended-upgrades ] 552s + [ ! -d /usr/share/doc/lxd ] 552s + [ ! -d /usr/share/doc/lxd-client ] 552s + [ ! -d /usr/share/doc/snapd ] 552s + type iptables 552s + cat 552s + chmod 755 /etc/rc.local 552s + . /etc/rc.local 552s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 552s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 552s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 552s + uname -m 552s + [ aarch64 = ppc64le ] 552s + [ -d /run/systemd/system ] 552s + systemd-detect-virt --quiet --vm 552s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 552s + cat 552s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 552s + echo COMPRESS=lz4 552s autopkgtest [16:50:32]: upgrading testbed (apt dist-upgrade and autopurge) 553s Reading package lists... 553s Building dependency tree... 553s Reading state information... 554s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 554s Starting 2 pkgProblemResolver with broken count: 0 554s Done 555s Entering ResolveByKeep 555s 555s Calculating upgrade... 556s The following packages will be upgraded: 556s libc-bin libc-dev-bin libc6 libc6-dev locales 556s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 556s Need to get 9530 kB of archives. 556s After this operation, 0 B of additional disk space will be used. 556s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 558s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 558s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 561s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 562s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 567s Preconfiguring packages ... 567s Fetched 9530 kB in 11s (894 kB/s) 567s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 567s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 567s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 567s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 567s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 567s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 567s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 568s Setting up libc6:arm64 (2.41-1ubuntu2) ... 568s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 568s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 568s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 568s Setting up libc-bin (2.41-1ubuntu2) ... 568s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 568s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 568s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 568s Setting up locales (2.41-1ubuntu2) ... 569s Generating locales (this might take a while)... 571s en_US.UTF-8... done 571s Generation complete. 571s Setting up libc-dev-bin (2.41-1ubuntu2) ... 571s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 571s Processing triggers for man-db (2.13.0-1) ... 573s Processing triggers for systemd (257.3-1ubuntu3) ... 574s Reading package lists... 574s Building dependency tree... 574s Reading state information... 575s Starting pkgProblemResolver with broken count: 0 575s Starting 2 pkgProblemResolver with broken count: 0 575s Done 575s Solving dependencies... 576s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 576s autopkgtest [16:50:56]: rebooting testbed after setup commands that affected boot 605s Reading package lists... 606s Building dependency tree... 606s Reading state information... 606s Starting pkgProblemResolver with broken count: 0 606s Starting 2 pkgProblemResolver with broken count: 0 606s Done 607s The following NEW packages will be installed: 607s cmake cmake-data cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 607s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 607s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu googletest libasan8 607s libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgomp1 libgtest-dev 607s libhwasan0 libisl23 libitm1 libjsoncpp26 liblsan0 libmpc3 libpkgconf3 607s librhash1 libseqan3-dev libsimde-dev libstdc++-14-dev libtsan2 libubsan1 607s libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 pkg-config pkgconf pkgconf-bin 607s rapidjson-dev seqan-raptor seqan-raptor-doc zlib1g-dev 607s 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. 607s Need to get 79.6 MB of archives. 607s After this operation, 291 MB of additional disk space will be used. 607s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake-data all 3.31.6-1ubuntu1 [2294 kB] 610s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp26 arm64 1.9.6-3 [78.7 kB] 610s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 librhash1 arm64 1.4.5-1 [128 kB] 610s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cmake arm64 3.31.6-1ubuntu1 [11.4 MB] 624s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 625s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 625s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 637s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 637s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 637s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 637s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 637s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 637s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 638s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 641s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 643s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 646s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 647s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 650s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 653s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 676s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 677s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 677s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 677s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 679s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 692s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 692s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 692s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 692s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 googletest all 1.16.0-1 [526 kB] 693s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 693s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 rapidjson-dev all 1.1.0+dfsg2-7.3ubuntu1 [97.3 kB] 693s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcereal-dev arm64 1.3.2+dfsg-5 [222 kB] 693s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgtest-dev arm64 1.16.0-1 [272 kB] 693s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 693s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 694s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libseqan3-dev all 3.4.0~rc.3+ds-3 [758 kB] 695s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsimde-dev all 0.8.2-1 [466 kB] 696s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxxhash-dev arm64 0.8.3-2 [81.7 kB] 696s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libyaml-cpp0.8 arm64 0.8.0+dfsg-7 [112 kB] 696s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libyaml-cpp-dev arm64 0.8.0+dfsg-7 [189 kB] 696s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 696s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 696s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 pkg-config arm64 1.8.1-4 [7362 B] 696s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 seqan-raptor arm64 3.0.1+ds-9 [682 kB] 697s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 seqan-raptor-doc all 3.0.1+ds-9 [1225 kB] 698s Fetched 79.6 MB in 1min 31s (879 kB/s) 698s Selecting previously unselected package cmake-data. 699s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 699s Preparing to unpack .../00-cmake-data_3.31.6-1ubuntu1_all.deb ... 699s Unpacking cmake-data (3.31.6-1ubuntu1) ... 699s Selecting previously unselected package libjsoncpp26:arm64. 699s Preparing to unpack .../01-libjsoncpp26_1.9.6-3_arm64.deb ... 699s Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 699s Selecting previously unselected package librhash1:arm64. 699s Preparing to unpack .../02-librhash1_1.4.5-1_arm64.deb ... 699s Unpacking librhash1:arm64 (1.4.5-1) ... 699s Selecting previously unselected package cmake. 699s Preparing to unpack .../03-cmake_3.31.6-1ubuntu1_arm64.deb ... 699s Unpacking cmake (3.31.6-1ubuntu1) ... 699s Selecting previously unselected package libisl23:arm64. 699s Preparing to unpack .../04-libisl23_0.27-1_arm64.deb ... 699s Unpacking libisl23:arm64 (0.27-1) ... 699s Selecting previously unselected package libmpc3:arm64. 699s Preparing to unpack .../05-libmpc3_1.3.1-1build2_arm64.deb ... 699s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 700s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 700s Preparing to unpack .../06-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 700s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 700s Selecting previously unselected package cpp-14. 700s Preparing to unpack .../07-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 700s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 700s Selecting previously unselected package cpp-aarch64-linux-gnu. 700s Preparing to unpack .../08-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 700s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 700s Selecting previously unselected package cpp. 700s Preparing to unpack .../09-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 700s Unpacking cpp (4:14.2.0-1ubuntu1) ... 700s Selecting previously unselected package libcc1-0:arm64. 700s Preparing to unpack .../10-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libgomp1:arm64. 700s Preparing to unpack .../11-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libitm1:arm64. 700s Preparing to unpack .../12-libitm1_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libasan8:arm64. 700s Preparing to unpack .../13-libasan8_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package liblsan0:arm64. 700s Preparing to unpack .../14-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libtsan2:arm64. 700s Preparing to unpack .../15-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libubsan1:arm64. 700s Preparing to unpack .../16-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libhwasan0:arm64. 700s Preparing to unpack .../17-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 700s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 700s Selecting previously unselected package libgcc-14-dev:arm64. 700s Preparing to unpack .../18-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 700s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 700s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 701s Preparing to unpack .../19-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 701s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 701s Selecting previously unselected package gcc-14. 701s Preparing to unpack .../20-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 701s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 701s Selecting previously unselected package gcc-aarch64-linux-gnu. 701s Preparing to unpack .../21-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 701s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 701s Selecting previously unselected package gcc. 701s Preparing to unpack .../22-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 701s Unpacking gcc (4:14.2.0-1ubuntu1) ... 701s Selecting previously unselected package libstdc++-14-dev:arm64. 701s Preparing to unpack .../23-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 701s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 701s Selecting previously unselected package g++-14-aarch64-linux-gnu. 701s Preparing to unpack .../24-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 701s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 702s Selecting previously unselected package g++-14. 702s Preparing to unpack .../25-g++-14_14.2.0-17ubuntu3_arm64.deb ... 702s Unpacking g++-14 (14.2.0-17ubuntu3) ... 702s Selecting previously unselected package g++-aarch64-linux-gnu. 702s Preparing to unpack .../26-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 702s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 702s Selecting previously unselected package g++. 702s Preparing to unpack .../27-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 702s Unpacking g++ (4:14.2.0-1ubuntu1) ... 702s Selecting previously unselected package googletest. 702s Preparing to unpack .../28-googletest_1.16.0-1_all.deb ... 702s Unpacking googletest (1.16.0-1) ... 702s Selecting previously unselected package libbz2-dev:arm64. 702s Preparing to unpack .../29-libbz2-dev_1.0.8-6_arm64.deb ... 702s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 702s Selecting previously unselected package rapidjson-dev. 702s Preparing to unpack .../30-rapidjson-dev_1.1.0+dfsg2-7.3ubuntu1_all.deb ... 702s Unpacking rapidjson-dev (1.1.0+dfsg2-7.3ubuntu1) ... 702s Selecting previously unselected package libcereal-dev. 702s Preparing to unpack .../31-libcereal-dev_1.3.2+dfsg-5_arm64.deb ... 702s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 702s Selecting previously unselected package libgtest-dev:arm64. 702s Preparing to unpack .../32-libgtest-dev_1.16.0-1_arm64.deb ... 702s Unpacking libgtest-dev:arm64 (1.16.0-1) ... 702s Selecting previously unselected package libpkgconf3:arm64. 702s Preparing to unpack .../33-libpkgconf3_1.8.1-4_arm64.deb ... 702s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 702s Selecting previously unselected package zlib1g-dev:arm64. 702s Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 702s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 702s Selecting previously unselected package libseqan3-dev. 702s Preparing to unpack .../35-libseqan3-dev_3.4.0~rc.3+ds-3_all.deb ... 702s Unpacking libseqan3-dev (3.4.0~rc.3+ds-3) ... 702s Selecting previously unselected package libsimde-dev. 702s Preparing to unpack .../36-libsimde-dev_0.8.2-1_all.deb ... 702s Unpacking libsimde-dev (0.8.2-1) ... 702s Selecting previously unselected package libxxhash-dev:arm64. 702s Preparing to unpack .../37-libxxhash-dev_0.8.3-2_arm64.deb ... 702s Unpacking libxxhash-dev:arm64 (0.8.3-2) ... 702s Selecting previously unselected package libyaml-cpp0.8:arm64. 702s Preparing to unpack .../38-libyaml-cpp0.8_0.8.0+dfsg-7_arm64.deb ... 702s Unpacking libyaml-cpp0.8:arm64 (0.8.0+dfsg-7) ... 702s Selecting previously unselected package libyaml-cpp-dev:arm64. 702s Preparing to unpack .../39-libyaml-cpp-dev_0.8.0+dfsg-7_arm64.deb ... 702s Unpacking libyaml-cpp-dev:arm64 (0.8.0+dfsg-7) ... 702s Selecting previously unselected package pkgconf-bin. 702s Preparing to unpack .../40-pkgconf-bin_1.8.1-4_arm64.deb ... 702s Unpacking pkgconf-bin (1.8.1-4) ... 702s Selecting previously unselected package pkgconf:arm64. 702s Preparing to unpack .../41-pkgconf_1.8.1-4_arm64.deb ... 702s Unpacking pkgconf:arm64 (1.8.1-4) ... 702s Selecting previously unselected package pkg-config:arm64. 702s Preparing to unpack .../42-pkg-config_1.8.1-4_arm64.deb ... 702s Unpacking pkg-config:arm64 (1.8.1-4) ... 702s Selecting previously unselected package seqan-raptor. 702s Preparing to unpack .../43-seqan-raptor_3.0.1+ds-9_arm64.deb ... 702s Unpacking seqan-raptor (3.0.1+ds-9) ... 703s Selecting previously unselected package seqan-raptor-doc. 703s Preparing to unpack .../44-seqan-raptor-doc_3.0.1+ds-9_all.deb ... 703s Unpacking seqan-raptor-doc (3.0.1+ds-9) ... 703s Setting up libsimde-dev (0.8.2-1) ... 703s Setting up libyaml-cpp0.8:arm64 (0.8.0+dfsg-7) ... 703s Setting up libyaml-cpp-dev:arm64 (0.8.0+dfsg-7) ... 703s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 703s Setting up googletest (1.16.0-1) ... 703s Setting up rapidjson-dev (1.1.0+dfsg2-7.3ubuntu1) ... 703s Setting up libpkgconf3:arm64 (1.8.1-4) ... 703s Setting up libjsoncpp26:arm64 (1.9.6-3) ... 703s Setting up libmpc3:arm64 (1.3.1-1build2) ... 703s Setting up pkgconf-bin (1.8.1-4) ... 703s Setting up libxxhash-dev:arm64 (0.8.3-2) ... 703s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 703s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 703s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 703s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 703s Setting up cmake-data (3.31.6-1ubuntu1) ... 703s Setting up librhash1:arm64 (1.4.5-1) ... 703s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 703s Setting up libisl23:arm64 (0.27-1) ... 703s Setting up seqan-raptor (3.0.1+ds-9) ... 703s Setting up seqan-raptor-doc (3.0.1+ds-9) ... 703s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 703s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 703s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 703s Setting up libbz2-dev:arm64 (1.0.8-6) ... 703s Setting up libgtest-dev:arm64 (1.16.0-1) ... 703s Setting up libcereal-dev (1.3.2+dfsg-5) ... 703s Setting up pkgconf:arm64 (1.8.1-4) ... 703s Setting up pkg-config:arm64 (1.8.1-4) ... 703s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 703s Setting up cmake (3.31.6-1ubuntu1) ... 703s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 703s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 703s Setting up libseqan3-dev (3.4.0~rc.3+ds-3) ... 703s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 703s Setting up cpp-14 (14.2.0-17ubuntu3) ... 703s Setting up cpp (4:14.2.0-1ubuntu1) ... 703s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 703s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 703s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 703s Setting up gcc-14 (14.2.0-17ubuntu3) ... 703s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 703s Setting up g++-14 (14.2.0-17ubuntu3) ... 703s Setting up gcc (4:14.2.0-1ubuntu1) ... 703s Setting up g++ (4:14.2.0-1ubuntu1) ... 703s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 703s Processing triggers for man-db (2.13.0-1) ... 704s Processing triggers for libc-bin (2.41-1ubuntu2) ... 719s autopkgtest [16:53:19]: test run-unit-test: [----------------------- 719s + pkg=seqan-raptor 719s + export LC_ALL=C.UTF-8 719s + LC_ALL=C.UTF-8 719s + '[' /tmp/autopkgtest.ccHTiC/autopkgtest_tmp = '' ']' 719s + cp -r CHANGELOG.md CMakeLists.txt CODE_OF_CONDUCT.md INSTALL.md LICENSE.md README.md build_system debian doc include lib src test util workflow /tmp/autopkgtest.ccHTiC/autopkgtest_tmp 719s + export 'CXXFLAGS=-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/' 719s + CXXFLAGS='-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/' 719s + cd /tmp/autopkgtest.ccHTiC/autopkgtest_tmp 719s + patch -p1 719s patching file test/raptor-test.cmake 719s + cd /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/test/unit 719s + cmake -DRAPTOR_SUBMODULES_DIR=/tmp/autopkgtest.ccHTiC/autopkgtest_tmp/test/unit/../../lib -DRAPTOR_NATIVE_BUILD=OFF . 719s -- The CXX compiler identification is GNU 14.2.0 720s -- The C compiler identification is GNU 14.2.0 720s -- Detecting CXX compiler ABI info 720s -- Detecting CXX compiler ABI info - done 720s -- Check for working CXX compiler: /usr/bin/c++ - skipped 720s -- Detecting CXX compile features 720s -- Detecting CXX compile features - done 720s -- Detecting C compiler ABI info 720s -- Detecting C compiler ABI info - done 720s -- Check for working C compiler: /usr/bin/cc - skipped 720s -- Detecting C compile features 720s -- Detecting C compile features - done 720s -- Finding RAPTOR and checking requirements: 720s -- RAPTOR include dir found: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include 720s -- Detected as running from a repository checkout… 720s -- …adding submodule include: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/include 720s -- …adding submodule include: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/robin-hood-hashing/src/include 720s -- …adding submodule include: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/sharg-parser/include 720s -- …adding submodule include: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/sharg-parser/test/include 720s -- …adding submodule include: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include 720s -- …adding submodule include: /usr/include/seqan3/vendor 720s -- C++ Standard-20 support: builtin 721s -- OpenMP Support: via -fopenmp 721s -- SIMD-OpenMP Support: via -fopenmp-simd 721s -- Suppressing GCC 4 warnings: via -Wno-psabi 721s -- Optimize build: disabled 721s -- Link Time Optimization: enabled 721s -- Binary-stripping: via -s 721s -- Thread support: builtin 721s -- Optional dependency: ZLIB-1.3.1 found 721s -- Optional dependency: BZip2-1.0.8 found 722s -- Optional dependency: libexecinfo found 722s -- Found Raptor: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include 722s -- Finding program ccache 722s -- Finding program ccache - Failed 724s -- You can run `make` to build the application. 724s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 724s -- Checking for module 'libxxhash' 724s -- Found libxxhash, version 0.8.3 724s -- Test dependency: Google Test 1.15.0 found. 724s -- Configuring done (4.4s) 724s -- Generating done (0.1s) 724s -- Build files have been written to: /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/test/unit 724s + make 724s [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o 746s [ 2%] Linking CXX static library ../../lib/libraptor_upgrade.a 746s [ 2%] Built target raptor_upgrade 746s [ 2%] Built target xxhash_project 746s [ 3%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o 749s In file included from /usr/include/simde/x86/mmx.h:30, 749s from /usr/include/simde/x86/sse.h:33, 749s from /usr/include/simde/x86/avx.h:28, 749s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, 749s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, 749s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/chopper_layout.cpp:9: 749s /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 749s 610 | # define SIMDE_POLY128_TYPE __int128 749s | ^~~~~~~~ 749s /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 749s 616 | typedef SIMDE_POLY128_TYPE simde_poly128; 749s | ^~~~~~~~~~~~~~~~~~ 757s [ 5%] Linking CXX static library ../../../lib/libchopper_layout_lib.a 757s [ 5%] Built target chopper_layout_lib 757s [ 6%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_line.cpp.o 758s [ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o 787s [ 8%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o 796s [ 10%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o 810s [ 11%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o 827s [ 12%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o 851s [ 13%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o 882s [ 15%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o 910s [ 16%] Linking CXX static library ../../lib/libraptor_argument_parsing.a 910s [ 16%] Built target raptor_argument_parsing 910s [ 17%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o 920s [ 18%] Linking CXX static library ../../lib/libraptor_prepare.a 920s [ 18%] Built target raptor_prepare 920s [ 20%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o 933s [ 21%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o 942s [ 22%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o 947s [ 24%] Linking CXX static library ../../lib/libraptor_build.a 947s [ 24%] Built target raptor_build 947s [ 25%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o 951s [ 26%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o 952s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 952s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 952s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:13: 952s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 952s 20 | : public T, public std::iterator { 952s | ^~~~~~~~ 952s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 952s from /usr/include/c++/14/vector:62, 952s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 952s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 952s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 952s 127 | struct _GLIBCXX17_DEPRECATED iterator 952s | ^~~~~~~~ 955s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 955s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:16: 955s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 955s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 955s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 955s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 955s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 955s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 955s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 955s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 955s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959s [ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o 968s [ 29%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o 969s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 969s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 969s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:13: 969s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 969s 20 | : public T, public std::iterator { 969s | ^~~~~~~~ 969s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 969s from /usr/include/c++/14/vector:62, 969s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 969s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 969s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 969s 127 | struct _GLIBCXX17_DEPRECATED iterator 969s | ^~~~~~~~ 972s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 972s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:16: 972s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 972s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 972s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 972s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 972s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 972s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 972s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 972s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 972s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974s [ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o 976s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 976s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 976s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: 976s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 976s 20 | : public T, public std::iterator { 976s | ^~~~~~~~ 976s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 976s from /usr/include/c++/14/vector:62, 976s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 976s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 976s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 976s 127 | struct _GLIBCXX17_DEPRECATED iterator 976s | ^~~~~~~~ 979s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 979s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: 979s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 979s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 979s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 979s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 979s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 979s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 979s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 979s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 979s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 979s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980s [ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o 982s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 982s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 982s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:13: 982s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 982s 20 | : public T, public std::iterator { 982s | ^~~~~~~~ 982s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 982s from /usr/include/c++/14/vector:62, 982s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 982s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 982s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 982s 127 | struct _GLIBCXX17_DEPRECATED iterator 982s | ^~~~~~~~ 985s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 985s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:16: 985s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 985s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 985s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 985s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 985s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 985s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 985s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 985s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 985s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988s [ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o 999s [ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o 1000s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1000s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1000s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:13: 1000s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1000s 20 | : public T, public std::iterator { 1000s | ^~~~~~~~ 1000s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 1000s from /usr/include/c++/14/vector:62, 1000s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1000s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1000s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 1000s 127 | struct _GLIBCXX17_DEPRECATED iterator 1000s | ^~~~~~~~ 1004s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/hierarchical_build.hpp:18, 1004s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:17: 1004s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1004s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1004s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1004s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1004s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 1004s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 1004s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1004s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1004s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006s [ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o 1008s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1008s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1008s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:17: 1008s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1008s 20 | : public T, public std::iterator { 1008s | ^~~~~~~~ 1008s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 1008s from /usr/include/c++/14/algorithm:60, 1008s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:13: 1008s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 1008s 127 | struct _GLIBCXX17_DEPRECATED iterator 1008s | ^~~~~~~~ 1009s [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o 1010s [ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o 1012s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1012s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1012s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:13: 1012s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1012s 20 | : public T, public std::iterator { 1012s | ^~~~~~~~ 1012s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 1012s from /usr/include/c++/14/vector:62, 1012s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1012s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1012s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 1012s 127 | struct _GLIBCXX17_DEPRECATED iterator 1012s | ^~~~~~~~ 1014s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, 1014s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:17: 1014s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1014s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1014s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1014s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1014s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 1014s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 1014s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1014s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1014s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017s [ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o 1019s [ 40%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o 1021s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1021s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1021s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:13: 1021s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1021s 20 | : public T, public std::iterator { 1021s | ^~~~~~~~ 1021s In file included from /usr/include/c++/14/bits/stl_algobase.h:65, 1021s from /usr/include/c++/14/vector:62, 1021s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1021s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1021s /usr/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 1021s 127 | struct _GLIBCXX17_DEPRECATED iterator 1021s | ^~~~~~~~ 1023s In file included from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/update_user_bins.hpp:15, 1023s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:15: 1023s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1023s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1023s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1023s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1023s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 256 bytes 1023s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=256’, or disable this warning with ‘-Wno-interference-size’ 1023s /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1023s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1023s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1025s [ 41%] Linking CXX static library ../../../lib/libraptor_build_hibf.a 1025s [ 41%] Built target raptor_build_hibf 1025s [ 43%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o 1054s [ 44%] Linking CXX static library ../../lib/libraptor_layout.a 1054s [ 44%] Built target raptor_layout 1054s [ 45%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o 1057s [ 46%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o 1072s [ 48%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o 1088s [ 49%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o 1103s [ 50%] Linking CXX static library ../../lib/libraptor_search.a 1103s [ 50%] Built target raptor_search 1103s [ 51%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o 1103s [ 53%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o 1104s [ 54%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o 1107s [ 55%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o 1108s [ 56%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o 1111s [ 58%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o 1114s [ 59%] Linking CXX static library ../../lib/libraptor_threshold.a 1114s [ 59%] Built target raptor_threshold 1114s [ 60%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o 1134s [ 62%] Linking CXX executable ../bin/raptor 1154s [ 62%] Built target raptor 1154s [ 63%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o 1160s In file included from /usr/include/simde/x86/mmx.h:30, 1160s from /usr/include/simde/x86/sse.h:33, 1160s from /usr/include/simde/x86/avx.h:28, 1160s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, 1160s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, 1160s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/../include/chopper/data_store.hpp:8, 1160s from /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/lib/chopper/src/chopper.cpp:6: 1160s /usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] 1160s 610 | # define SIMDE_POLY128_TYPE __int128 1160s | ^~~~~~~~ 1160s /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 1160s 616 | typedef SIMDE_POLY128_TYPE simde_poly128; 1160s | ^~~~~~~~~~~~~~~~~~ 1209s [ 64%] Linking CXX executable ../../../bin/chopper 1210s [ 64%] Built target chopper 1210s [ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o 1213s [ 67%] Linking CXX executable issue_142 1214s [ 67%] Built target issue_142 1214s [ 68%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o 1216s [ 69%] Linking CXX executable memory_usage 1218s [ 69%] Built target memory_usage 1218s [ 70%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o 1241s [ 72%] Linking CXX executable validate_shape 1249s [ 72%] Built target validate_shape 1249s [ 73%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o 1257s [ 74%] Linking CXX executable options_test 1259s [ 74%] Built target options_test 1259s [ 75%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o 1266s [ 77%] Linking CXX executable build_hibf_chopper_test 1269s [ 77%] Built target build_hibf_chopper_test 1269s [ 78%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o 1278s [ 79%] Linking CXX executable build_hibf_test 1281s [ 79%] Built target build_hibf_test 1281s [ 81%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o 1291s [ 82%] Linking CXX executable build_ibf_compressed_test 1294s [ 82%] Built target build_ibf_compressed_test 1294s [ 83%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o 1302s [ 84%] Linking CXX executable build_ibf_partitioned_test 1305s [ 84%] Built target build_ibf_partitioned_test 1305s [ 86%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o 1314s [ 87%] Linking CXX executable build_ibf_test 1317s [ 87%] Built target build_ibf_test 1317s [ 88%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o 1325s [ 89%] Linking CXX executable search_hibf_test 1328s [ 89%] Built target search_hibf_test 1328s [ 91%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o 1337s [ 92%] Linking CXX executable search_hibf_preprocessing_test 1340s [ 92%] Built target search_hibf_preprocessing_test 1340s [ 93%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o 1350s [ 94%] Linking CXX executable search_ibf_preprocessing_test 1353s [ 94%] Built target search_ibf_preprocessing_test 1353s [ 96%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o 1361s [ 97%] Linking CXX executable search_ibf_test 1363s [ 97%] Built target search_ibf_test 1363s [ 98%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o 1373s [100%] Linking CXX executable upgrade_test 1375s [100%] Built target upgrade_test 1375s + find . -name raptor -delete 1375s + ctest . 1375s Test project /tmp/autopkgtest.ccHTiC/autopkgtest_tmp/test/unit 1375s Start 1: api/issue_142 1375s 1/14 Test #1: api/issue_142 ............................... Passed 0.01 sec 1375s Start 2: api/memory_usage 1375s 2/14 Test #2: api/memory_usage ............................ Passed 0.00 sec 1375s Start 3: api/validate_shape 1375s 3/14 Test #3: api/validate_shape .......................... Passed 0.01 sec 1375s Start 4: cli/argument_parsing/options_test 1376s 4/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.24 sec 1376s Start 5: cli/build/build_hibf_chopper_test 1376s 5/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.05 sec 1376s Start 6: cli/build/build_hibf_test 1376s 6/14 Test #6: cli/build/build_hibf_test ................... Passed 0.32 sec 1376s Start 7: cli/build/build_ibf_compressed_test 1377s 7/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 0.61 sec 1377s Start 8: cli/build/build_ibf_partitioned_test 1378s 8/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 1.21 sec 1378s Start 9: cli/build/build_ibf_test 1378s 9/14 Test #9: cli/build/build_ibf_test .................... Passed 0.29 sec 1378s Start 10: cli/search/search_hibf_test 1379s 10/14 Test #10: cli/search/search_hibf_test ................. Passed 0.41 sec 1379s Start 11: cli/search/search_hibf_preprocessing_test 1380s 11/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 1.49 sec 1380s Start 12: cli/search/search_ibf_preprocessing_test 1382s 12/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 1.57 sec 1382s Start 13: cli/search/search_ibf_test 1382s 13/14 Test #13: cli/search/search_ibf_test .................. Passed 0.44 sec 1382s Start 14: cli/upgrade/upgrade_test 1382s 14/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.07 sec 1382s 1382s 100% tests passed, 0 tests failed out of 14 1382s 1382s Total Test time (real) = 6.74 sec 1382s + find . -name raptor 1383s autopkgtest [17:04:23]: test run-unit-test: -----------------------] 1383s autopkgtest [17:04:23]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1383s run-unit-test PASS 1384s autopkgtest [17:04:24]: @@@@@@@@@@@@@@@@@@@@ summary 1384s cwl PASS 1384s run-unit-test PASS 1389s nova [W] Using flock in prodstack6-arm64 1389s Creating nova instance adt-plucky-arm64-seqan-raptor-20250315-164119-juju-7f2275-prod-proposed-migration-environment-15-e0e829be-7828-4b3e-b8ef-89bfd9d14be7 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1389s nova [W] Timed out waiting for 420f109a-ce67-415a-b42b-c775b8db9f6e to get deleted. 1389s nova [W] Using flock in prodstack6-arm64 1389s Creating nova instance adt-plucky-arm64-seqan-raptor-20250315-164119-juju-7f2275-prod-proposed-migration-environment-15-e0e829be-7828-4b3e-b8ef-89bfd9d14be7 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1389s nova [W] Timed out waiting for 8cfd5072-cbb1-4974-8b2c-5e878eb6b6e6 to get deleted.