0s autopkgtest [19:55:28]: starting date and time: 2024-11-12 19:55:28+0000 0s autopkgtest [19:55:28]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:55:28]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4l_9rjtp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cmake --apt-upgrade seqan-needle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=cmake/3.31.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-4.secgroup --name adt-plucky-arm64-seqan-needle-20241112-195526-juju-7f2275-prod-proposed-migration-environment-15-2e452fbc-3f90-4f63-9817-ec7ed7e7b1d2 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 267s autopkgtest [19:59:55]: testbed dpkg architecture: arm64 267s autopkgtest [19:59:55]: testbed apt version: 2.9.8 267s autopkgtest [19:59:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 268s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 268s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.5 kB] 268s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 268s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 268s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [853 kB] 269s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [114 kB] 269s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 270s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [604 kB] 270s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 270s Fetched 1823 kB in 2s (893 kB/s) 270s Reading package lists... 273s Reading package lists... 273s Building dependency tree... 273s Reading state information... 274s Calculating upgrade... 275s The following packages will be upgraded: 275s libarchive13t64 libclang-cpp18 libedit2 libllvm18 python3-cffi-backend 276s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 40.0 MB of archives. 276s After this operation, 1024 B of additional disk space will be used. 276s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-cffi-backend arm64 1.17.1-2 [83.2 kB] 276s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libedit2 arm64 3.1-20240808-1 [97.7 kB] 276s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive13t64 arm64 3.7.4-1.1 [379 kB] 276s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libclang-cpp18 arm64 1:18.1.8-12 [13.1 MB] 291s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libllvm18 arm64 1:18.1.8-12 [26.3 MB] 327s Fetched 40.0 MB in 51s (791 kB/s) 327s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79936 files and directories currently installed.) 327s Preparing to unpack .../python3-cffi-backend_1.17.1-2_arm64.deb ... 327s Unpacking python3-cffi-backend:arm64 (1.17.1-2) over (1.17.1-1) ... 327s Preparing to unpack .../libedit2_3.1-20240808-1_arm64.deb ... 327s Unpacking libedit2:arm64 (3.1-20240808-1) over (3.1-20240517-1) ... 327s Preparing to unpack .../libarchive13t64_3.7.4-1.1_arm64.deb ... 327s Unpacking libarchive13t64:arm64 (3.7.4-1.1) over (3.7.4-1ubuntu1) ... 327s Preparing to unpack .../libclang-cpp18_1%3a18.1.8-12_arm64.deb ... 327s Unpacking libclang-cpp18 (1:18.1.8-12) over (1:18.1.8-11) ... 328s Preparing to unpack .../libllvm18_1%3a18.1.8-12_arm64.deb ... 328s Unpacking libllvm18:arm64 (1:18.1.8-12) over (1:18.1.8-11) ... 329s Setting up libedit2:arm64 (3.1-20240808-1) ... 329s Setting up libarchive13t64:arm64 (3.7.4-1.1) ... 329s Setting up python3-cffi-backend:arm64 (1.17.1-2) ... 329s Setting up libllvm18:arm64 (1:18.1.8-12) ... 329s Setting up libclang-cpp18 (1:18.1.8-12) ... 329s Processing triggers for man-db (2.12.1-3) ... 329s Processing triggers for libc-bin (2.40-1ubuntu3) ... 329s Reading package lists... 330s Building dependency tree... 330s Reading state information... 331s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 332s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 332s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 332s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 334s Reading package lists... 334s Reading package lists... 334s Building dependency tree... 334s Reading state information... 335s Calculating upgrade... 336s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 336s Reading package lists... 337s Building dependency tree... 337s Reading state information... 338s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s autopkgtest [20:01:09]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 341s autopkgtest [20:01:09]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-needle 350s Get:1 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (dsc) [2275 B] 350s Get:2 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (tar) [5049 kB] 350s Get:3 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (diff) [6484 B] 351s gpgv: Signature made Mon Jan 8 18:55:15 2024 UTC 351s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 351s gpgv: issuer "tillea@rki.de" 351s gpgv: Can't check signature: No public key 351s dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.2+ds-2.dsc: no acceptable signature found 351s autopkgtest [20:01:19]: testing package seqan-needle version 1.0.2+ds-2 352s autopkgtest [20:01:20]: build not needed 355s autopkgtest [20:01:23]: test run-unit-tests: preparing testbed 360s Reading package lists... 360s Building dependency tree... 360s Reading state information... 361s Starting pkgProblemResolver with broken count: 0 361s Starting 2 pkgProblemResolver with broken count: 0 361s Done 362s The following additional packages will be installed: 362s build-essential cmake cmake-data cpp cpp-14 cpp-14-aarch64-linux-gnu 362s cpp-aarch64-linux-gnu g++ g++-14 g++-14-aarch64-linux-gnu 362s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 362s gcc-aarch64-linux-gnu googletest libasan8 libbz2-dev libcc1-0 libcereal-dev 362s libgcc-14-dev libgomp1 libgtest-dev libhwasan0 libisl23 libitm1 libjsoncpp26 362s liblsan0 libmpc3 librhash1 libseqan3-dev libstdc++-14-dev libtsan2 libubsan1 362s rapidjson-dev zlib1g-dev 362s Suggested packages: 362s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-14-locales 362s cpp-14-doc gcc-14-doc gcc-multilib manpages-dev autoconf automake libtool 362s flex bison gdb gcc-doc gdb-aarch64-linux-gnu libstdc++-14-doc rapidjson-doc 362s Recommended packages: 362s bzip2-doc 362s The following NEW packages will be installed: 362s autopkgtest-satdep build-essential cmake cmake-data cpp cpp-14 362s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu g++ g++-14 362s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 362s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu googletest libasan8 362s libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgomp1 libgtest-dev 362s libhwasan0 libisl23 libitm1 libjsoncpp26 liblsan0 libmpc3 librhash1 362s libseqan3-dev libstdc++-14-dev libtsan2 libubsan1 rapidjson-dev zlib1g-dev 362s 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. 362s Need to get 76.5 MB/76.5 MB of archives. 362s After this operation, 270 MB of additional disk space will be used. 362s Get:1 /tmp/autopkgtest.9xobeA/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 362s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 363s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 364s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [10.6 MB] 376s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-7ubuntu1 [1030 B] 376s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 376s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 376s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-7ubuntu1 [49.7 kB] 376s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-7ubuntu1 [145 kB] 377s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-7ubuntu1 [27.8 kB] 377s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-7ubuntu1 [2893 kB] 380s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-7ubuntu1 [1283 kB] 381s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-7ubuntu1 [2691 kB] 384s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-7ubuntu1 [1151 kB] 386s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-7ubuntu1 [1599 kB] 387s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-7ubuntu1 [2594 kB] 390s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [20.9 MB] 414s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-7ubuntu1 [515 kB] 414s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 414s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 414s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-7ubuntu1 [2474 kB] 417s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [12.1 MB] 430s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-7ubuntu1 [19.8 kB] 430s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 430s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 430s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 430s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 cmake-data all 3.31.0-1 [2290 kB] 432s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjsoncpp26 arm64 1.9.6-2 [78.6 kB] 432s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 librhash1 arm64 1.4.5-1 [128 kB] 432s Get:30 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 cmake arm64 3.31.0-1 [11.4 MB] 444s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 googletest all 1.15.2-1 [523 kB] 445s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 445s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [96.9 kB] 445s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcereal-dev arm64 1.3.2+dfsg-5 [222 kB] 445s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgtest-dev arm64 1.15.2-1 [272 kB] 445s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 446s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libseqan3-dev all 3.3.0+ds-2 [747 kB] 448s Fetched 76.5 MB in 1min 25s (902 kB/s) 448s Selecting previously unselected package libisl23:arm64. 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79936 files and directories currently installed.) 448s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 448s Unpacking libisl23:arm64 (0.27-1) ... 448s Selecting previously unselected package libmpc3:arm64. 448s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 448s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 448s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 448s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 448s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 448s Selecting previously unselected package cpp-14. 448s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_arm64.deb ... 448s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 448s Selecting previously unselected package cpp-aarch64-linux-gnu. 448s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 448s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 448s Selecting previously unselected package cpp. 448s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 448s Unpacking cpp (4:14.1.0-2ubuntu1) ... 448s Selecting previously unselected package libcc1-0:arm64. 448s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_arm64.deb ... 448s Unpacking libcc1-0:arm64 (14.2.0-7ubuntu1) ... 448s Selecting previously unselected package libgomp1:arm64. 448s Preparing to unpack .../07-libgomp1_14.2.0-7ubuntu1_arm64.deb ... 448s Unpacking libgomp1:arm64 (14.2.0-7ubuntu1) ... 448s Selecting previously unselected package libitm1:arm64. 448s Preparing to unpack .../08-libitm1_14.2.0-7ubuntu1_arm64.deb ... 448s Unpacking libitm1:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package libasan8:arm64. 449s Preparing to unpack .../09-libasan8_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking libasan8:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package liblsan0:arm64. 449s Preparing to unpack .../10-liblsan0_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking liblsan0:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package libtsan2:arm64. 449s Preparing to unpack .../11-libtsan2_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking libtsan2:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package libubsan1:arm64. 449s Preparing to unpack .../12-libubsan1_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking libubsan1:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package libhwasan0:arm64. 449s Preparing to unpack .../13-libhwasan0_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking libhwasan0:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package libgcc-14-dev:arm64. 449s Preparing to unpack .../14-libgcc-14-dev_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 449s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 449s Preparing to unpack .../15-gcc-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 449s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 450s Selecting previously unselected package gcc-14. 450s Preparing to unpack .../16-gcc-14_14.2.0-7ubuntu1_arm64.deb ... 450s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 450s Selecting previously unselected package gcc-aarch64-linux-gnu. 450s Preparing to unpack .../17-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 450s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 450s Selecting previously unselected package gcc. 450s Preparing to unpack .../18-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 450s Unpacking gcc (4:14.1.0-2ubuntu1) ... 450s Selecting previously unselected package libstdc++-14-dev:arm64. 450s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-7ubuntu1_arm64.deb ... 450s Unpacking libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 450s Selecting previously unselected package g++-14-aarch64-linux-gnu. 450s Preparing to unpack .../20-g++-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 450s Unpacking g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 450s Selecting previously unselected package g++-14. 450s Preparing to unpack .../21-g++-14_14.2.0-7ubuntu1_arm64.deb ... 450s Unpacking g++-14 (14.2.0-7ubuntu1) ... 450s Selecting previously unselected package g++-aarch64-linux-gnu. 450s Preparing to unpack .../22-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 450s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 451s Selecting previously unselected package g++. 451s Preparing to unpack .../23-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 451s Unpacking g++ (4:14.1.0-2ubuntu1) ... 451s Selecting previously unselected package build-essential. 451s Preparing to unpack .../24-build-essential_12.10ubuntu1_arm64.deb ... 451s Unpacking build-essential (12.10ubuntu1) ... 451s Selecting previously unselected package cmake-data. 451s Preparing to unpack .../25-cmake-data_3.31.0-1_all.deb ... 451s Unpacking cmake-data (3.31.0-1) ... 451s Selecting previously unselected package libjsoncpp26:arm64. 451s Preparing to unpack .../26-libjsoncpp26_1.9.6-2_arm64.deb ... 451s Unpacking libjsoncpp26:arm64 (1.9.6-2) ... 451s Selecting previously unselected package librhash1:arm64. 451s Preparing to unpack .../27-librhash1_1.4.5-1_arm64.deb ... 451s Unpacking librhash1:arm64 (1.4.5-1) ... 451s Selecting previously unselected package cmake. 451s Preparing to unpack .../28-cmake_3.31.0-1_arm64.deb ... 451s Unpacking cmake (3.31.0-1) ... 452s Selecting previously unselected package googletest. 452s Preparing to unpack .../29-googletest_1.15.2-1_all.deb ... 452s Unpacking googletest (1.15.2-1) ... 452s Selecting previously unselected package libbz2-dev:arm64. 452s Preparing to unpack .../30-libbz2-dev_1.0.8-6_arm64.deb ... 452s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 452s Selecting previously unselected package rapidjson-dev. 452s Preparing to unpack .../31-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... 452s Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... 452s Selecting previously unselected package libcereal-dev. 452s Preparing to unpack .../32-libcereal-dev_1.3.2+dfsg-5_arm64.deb ... 452s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 452s Selecting previously unselected package libgtest-dev:arm64. 452s Preparing to unpack .../33-libgtest-dev_1.15.2-1_arm64.deb ... 452s Unpacking libgtest-dev:arm64 (1.15.2-1) ... 452s Selecting previously unselected package zlib1g-dev:arm64. 452s Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 452s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 452s Selecting previously unselected package libseqan3-dev. 452s Preparing to unpack .../35-libseqan3-dev_3.3.0+ds-2_all.deb ... 452s Unpacking libseqan3-dev (3.3.0+ds-2) ... 452s Selecting previously unselected package autopkgtest-satdep. 452s Preparing to unpack .../36-1-autopkgtest-satdep.deb ... 452s Unpacking autopkgtest-satdep (0) ... 452s Setting up libgomp1:arm64 (14.2.0-7ubuntu1) ... 452s Setting up googletest (1.15.2-1) ... 452s Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... 452s Setting up libjsoncpp26:arm64 (1.9.6-2) ... 452s Setting up libmpc3:arm64 (1.3.1-1build2) ... 452s Setting up libubsan1:arm64 (14.2.0-7ubuntu1) ... 452s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 452s Setting up libhwasan0:arm64 (14.2.0-7ubuntu1) ... 452s Setting up libasan8:arm64 (14.2.0-7ubuntu1) ... 452s Setting up cmake-data (3.31.0-1) ... 452s Setting up librhash1:arm64 (1.4.5-1) ... 452s Setting up libtsan2:arm64 (14.2.0-7ubuntu1) ... 452s Setting up libisl23:arm64 (0.27-1) ... 452s Setting up libcc1-0:arm64 (14.2.0-7ubuntu1) ... 452s Setting up liblsan0:arm64 (14.2.0-7ubuntu1) ... 452s Setting up libitm1:arm64 (14.2.0-7ubuntu1) ... 452s Setting up libbz2-dev:arm64 (1.0.8-6) ... 452s Setting up libgtest-dev:arm64 (1.15.2-1) ... 452s Setting up libcereal-dev (1.3.2+dfsg-5) ... 452s Setting up cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 452s Setting up cmake (3.31.0-1) ... 452s Setting up libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 452s Setting up libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 452s Setting up libseqan3-dev (3.3.0+ds-2) ... 452s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 452s Setting up cpp-14 (14.2.0-7ubuntu1) ... 452s Setting up cpp (4:14.1.0-2ubuntu1) ... 452s Setting up gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 452s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 452s Setting up g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 452s Setting up gcc-14 (14.2.0-7ubuntu1) ... 452s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 452s Setting up g++-14 (14.2.0-7ubuntu1) ... 452s Setting up gcc (4:14.1.0-2ubuntu1) ... 452s Setting up g++ (4:14.1.0-2ubuntu1) ... 452s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 452s Setting up build-essential (12.10ubuntu1) ... 452s Setting up autopkgtest-satdep (0) ... 452s Processing triggers for man-db (2.12.1-3) ... 453s Processing triggers for libc-bin (2.40-1ubuntu3) ... 456s (Reading database ... 86102 files and directories currently installed.) 456s Removing autopkgtest-satdep (0) ... 457s autopkgtest [20:03:05]: test run-unit-tests: [----------------------- 458s -- The C compiler identification is GNU 14.2.0 458s -- The CXX compiler identification is GNU 14.2.0 458s -- Detecting C compiler ABI info 458s -- Detecting C compiler ABI info - done 458s -- Check for working C compiler: /usr/bin/cc - skipped 458s -- Detecting C compile features 458s -- Detecting C compile features - done 458s -- Detecting CXX compiler ABI info 458s -- Detecting CXX compiler ABI info - done 458s -- Check for working CXX compiler: /usr/bin/c++ - skipped 458s -- Detecting CXX compile features 458s -- Detecting CXX compile features - done 461s CMake Deprecation Warning at lib/robin-hood-hashing/CMakeLists.txt:1 (cmake_minimum_required): 461s Compatibility with CMake < 3.10 will be removed from a future version of 461s CMake. 461s 461s Update the VERSION argument value or use a ... suffix to tell 461s CMake that the project does not need compatibility with older versions. 461s 461s 461s CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): 461s Compatibility with CMake < 3.10 will be removed from a future version of 461s CMake. 461s 461s Update the VERSION argument value or use a ... suffix to tell 461s CMake that the project does not need compatibility with older versions. 461s 461s 462s -- Found OpenMP_C: -fopenmp (found version "4.5") 462s -- Found OpenMP_CXX: -fopenmp (found version "4.5") 462s -- Found OpenMP: TRUE (found version "4.5") 462s -- You can run `make` to build the application. 462s CMake Deprecation Warning at doc/CMakeLists.txt:1 (cmake_minimum_required): 462s Compatibility with CMake < 3.10 will be removed from a future version of 462s CMake. 462s 462s Update the VERSION argument value or use a ... suffix to tell 462s CMake that the project does not need compatibility with older versions. 462s 462s 462s -- Doxygen not found. 462s CMake Deprecation Warning at test/CMakeLists.txt:1 (cmake_minimum_required): 462s Compatibility with CMake < 3.10 will be removed from a future version of 462s CMake. 462s 462s Update the VERSION argument value or use a ... suffix to tell 462s CMake that the project does not need compatibility with older versions. 462s 462s 462s CMake Deprecation Warning at test/data/datasources.cmake:1 (cmake_minimum_required): 462s Compatibility with CMake < 3.10 will be removed from a future version of 462s CMake. 462s 462s Update the VERSION argument value or use a ... suffix to tell 462s CMake that the project does not need compatibility with older versions. 462s Call Stack (most recent call first): 462s test/CMakeLists.txt:98 (include) 462s 462s 462s CMake Deprecation Warning at test/api/CMakeLists.txt:1 (cmake_minimum_required): 462s Compatibility with CMake < 3.10 will be removed from a future version of 462s CMake. 462s 462s Update the VERSION argument value or use a ... suffix to tell 462s CMake that the project does not need compatibility with older versions. 462s 462s 462s CMake Deprecation Warning at test/cli/CMakeLists.txt:1 (cmake_minimum_required): 462s Compatibility with CMake < 3.10 will be removed from a future version of 462s CMake. 462s 462s Update the VERSION argument value or use a ... suffix to tell 462s CMake that the project does not need compatibility with older versions. 462s 462s 462s -- You can run `make test` to build and run tests. 462s CMake Deprecation Warning at test/coverage/CMakeLists.txt:1 (cmake_minimum_required): 462s Compatibility with CMake < 3.10 will be removed from a future version of 462s CMake. 462s 462s Update the VERSION argument value or use a ... suffix to tell 462s CMake that the project does not need compatibility with older versions. 462s 462s 462s -- Configuring done (4.9s) 462s -- Generating done (0.1s) 462s -- Build files have been written to: /tmp/autopkgtest.9xobeA/build.13d/src/build-tests 462s Running tests... 462s Test project /tmp/autopkgtest.9xobeA/build.13d/src/build-tests 463s gmake[1]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests/test' 463s gmake[2]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 463s gmake[3]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 463s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 463s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 463s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 463s [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o 468s /tmp/autopkgtest.9xobeA/build.13d/src/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: 468s /tmp/autopkgtest.9xobeA/build.13d/src/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 468s 242 | seqan3::detail::latch sync_point{thread_count}; 468s | ^~~~~~~~~~~~ 468s /tmp/autopkgtest.9xobeA/build.13d/src/src/ibf.cpp:243:40: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 468s 243 | seqan3::detail::latch sync_point_2{thread_count}; 468s | ^~~~~~~~~~~~ 495s [ 13%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o 519s [ 20%] Linking CXX static library ../lib/libneedle_lib.a 519s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 519s [ 20%] Built target needle_lib 519s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 519s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 519s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 519s [ 26%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o 537s [ 33%] Linking CXX executable minimiser_test 537s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 537s [ 33%] Built target minimiser_test 537s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 537s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 537s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 537s [ 40%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o 546s [ 46%] Linking CXX executable count_test 546s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 546s [ 46%] Built target count_test 546s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 546s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 546s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 546s [ 53%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o 560s [ 60%] Linking CXX executable insert_delete_test 560s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 560s [ 60%] Built target insert_delete_test 560s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 560s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 560s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 560s [ 66%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o 572s [ 73%] Linking CXX executable estimate_test 572s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 572s [ 73%] Built target estimate_test 572s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 572s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 572s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 572s [ 80%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o 587s [ 86%] Linking CXX executable ibf_test 587s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 587s [ 86%] Built target ibf_test 587s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 587s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 587s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 587s [ 93%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o 601s [100%] Linking CXX executable ibfmin_test 601s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s [100%] Built target ibfmin_test 601s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s [100%] Built target api_test 601s gmake[3]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[2]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[1]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests/test' 601s gmake[1]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests/test' 601s gmake[2]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[3]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s [ 1%] Creating directories for 'datasource--exp_01.fasta' 601s [ 2%] Performing download step (verify) for 'datasource--exp_01.fasta' 601s -- verifying file... 601s file='/tmp/autopkgtest.9xobeA/build.13d/src/test/data/exp_01.fasta' 601s -- verifying file... done 601s [ 4%] No update step for 'datasource--exp_01.fasta' 601s [ 5%] No patch step for 'datasource--exp_01.fasta' 601s [ 7%] No configure step for 'datasource--exp_01.fasta' 601s [ 8%] No build step for 'datasource--exp_01.fasta' 601s [ 9%] Performing install step for 'datasource--exp_01.fasta' 601s [ 11%] No test step for 'datasource--exp_01.fasta' 601s [ 12%] Completed 'datasource--exp_01.fasta' 601s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s [ 12%] Built target datasource--exp_01.fasta 601s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s [ 16%] Built target needle_lib 601s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 601s [ 18%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o 629s [ 19%] Linking CXX executable ../bin/needle 629s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 629s [ 19%] Built target needle 629s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 629s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 629s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 629s [ 21%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o 638s [ 22%] Linking CXX executable delete_options_test 638s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 639s [ 22%] Built target delete_options_test 639s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 639s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 639s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 639s [ 23%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o 642s [ 25%] Linking CXX executable needle_options_test 642s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s [ 25%] Built target needle_options_test 642s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s [ 26%] Creating directories for 'datasource--mini_example.minimiser' 642s [ 26%] Performing download step (verify) for 'datasource--mini_example.minimiser' 642s -- verifying file... 642s file='/tmp/autopkgtest.9xobeA/build.13d/src/test/data/mini_example.minimiser' 642s -- verifying file... done 642s [ 28%] No update step for 'datasource--mini_example.minimiser' 642s [ 29%] No patch step for 'datasource--mini_example.minimiser' 642s [ 30%] No configure step for 'datasource--mini_example.minimiser' 642s [ 32%] No build step for 'datasource--mini_example.minimiser' 642s [ 33%] Performing install step for 'datasource--mini_example.minimiser' 642s [ 35%] No test step for 'datasource--mini_example.minimiser' 642s [ 36%] Completed 'datasource--mini_example.minimiser' 642s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s [ 36%] Built target datasource--mini_example.minimiser 642s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 642s [ 38%] Creating directories for 'datasource--mini_example.fasta' 642s [ 39%] Performing download step (verify) for 'datasource--mini_example.fasta' 642s -- verifying file... 642s file='/tmp/autopkgtest.9xobeA/build.13d/src/test/data/mini_example.fasta' 642s -- verifying file... done 642s [ 40%] No update step for 'datasource--mini_example.fasta' 642s [ 42%] No patch step for 'datasource--mini_example.fasta' 642s [ 43%] No configure step for 'datasource--mini_example.fasta' 642s [ 45%] No build step for 'datasource--mini_example.fasta' 642s [ 46%] Performing install step for 'datasource--mini_example.fasta' 642s [ 47%] No test step for 'datasource--mini_example.fasta' 643s [ 49%] Completed 'datasource--mini_example.fasta' 643s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 643s [ 49%] Built target datasource--mini_example.fasta 643s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 643s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 643s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 643s [ 50%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o 647s [ 52%] Linking CXX executable ibf_options_test 647s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 647s [ 52%] Built target ibf_options_test 647s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 647s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 647s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 647s [ 53%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o 657s [ 54%] Linking CXX executable insert_options_test 657s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 657s [ 54%] Built target insert_options_test 657s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 657s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 657s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 657s [ 56%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o 661s [ 57%] Linking CXX executable minimiser_options_test 661s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 661s [ 57%] Built target minimiser_options_test 661s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 661s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 661s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 661s [ 59%] Creating directories for 'datasource--mini_gen.fasta' 661s [ 60%] Performing download step (verify) for 'datasource--mini_gen.fasta' 661s -- verifying file... 661s file='/tmp/autopkgtest.9xobeA/build.13d/src/test/data/mini_gen.fasta' 661s -- verifying file... done 661s [ 61%] No update step for 'datasource--mini_gen.fasta' 662s [ 63%] No patch step for 'datasource--mini_gen.fasta' 662s [ 64%] No configure step for 'datasource--mini_gen.fasta' 662s [ 66%] No build step for 'datasource--mini_gen.fasta' 662s [ 67%] Performing install step for 'datasource--mini_gen.fasta' 662s [ 69%] No test step for 'datasource--mini_gen.fasta' 662s [ 70%] Completed 'datasource--mini_gen.fasta' 662s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s [ 70%] Built target datasource--mini_gen.fasta 662s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s [ 71%] Creating directories for 'datasource--ibf_1' 662s [ 73%] Performing download step (verify) for 'datasource--ibf_1' 662s -- verifying file... 662s file='/tmp/autopkgtest.9xobeA/build.13d/src/test/data/IBF_1' 662s -- verifying file... done 662s [ 74%] No update step for 'datasource--ibf_1' 662s [ 76%] No patch step for 'datasource--ibf_1' 662s [ 77%] No configure step for 'datasource--ibf_1' 662s [ 78%] No build step for 'datasource--ibf_1' 662s [ 80%] Performing install step for 'datasource--ibf_1' 662s [ 81%] No test step for 'datasource--ibf_1' 662s [ 83%] Completed 'datasource--ibf_1' 662s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s [ 83%] Built target datasource--ibf_1 662s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 662s [ 84%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o 672s [ 85%] Linking CXX executable estimate_options_test 672s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 672s [ 85%] Built target estimate_options_test 672s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 672s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 672s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 672s [ 87%] Creating directories for 'datasource--mini_gen.genome' 672s [ 88%] Performing download step (verify) for 'datasource--mini_gen.genome' 672s -- verifying file... 672s file='/tmp/autopkgtest.9xobeA/build.13d/src/test/data/mini_gen.genome' 672s -- verifying file... done 672s [ 90%] No update step for 'datasource--mini_gen.genome' 672s [ 91%] No patch step for 'datasource--mini_gen.genome' 672s [ 92%] No configure step for 'datasource--mini_gen.genome' 673s [ 94%] No build step for 'datasource--mini_gen.genome' 673s [ 95%] Performing install step for 'datasource--mini_gen.genome' 673s [ 97%] No test step for 'datasource--mini_gen.genome' 673s [ 98%] Completed 'datasource--mini_gen.genome' 673s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 673s [ 98%] Built target datasource--mini_gen.genome 673s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 673s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 673s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 673s [ 98%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o 677s [100%] Linking CXX executable count_options_test 678s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 678s [100%] Built target count_options_test 678s gmake[4]: Entering directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 678s gmake[4]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 678s [100%] Built target cli_test 678s gmake[3]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 678s gmake[2]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests' 678s gmake[1]: Leaving directory '/tmp/autopkgtest.9xobeA/build.13d/src/build-tests/test' 678s Start 1: test/api/count_test 678s 1/13 Test #1: test/api/count_test ............... Passed 0.01 sec 678s Start 2: test/api/insert_delete_test 678s 2/13 Test #2: test/api/insert_delete_test ....... Passed 0.02 sec 678s Start 3: test/api/estimate_test 684s 3/13 Test #3: test/api/estimate_test ............ Passed 6.33 sec 684s Start 4: test/api/ibf_test 686s 4/13 Test #4: test/api/ibf_test ................. Passed 1.67 sec 686s Start 5: test/api/ibfmin_test 686s 5/13 Test #5: test/api/ibfmin_test .............. Passed 0.01 sec 686s Start 6: test/api/minimiser_test 686s 6/13 Test #6: test/api/minimiser_test ........... Passed 0.01 sec 686s Start 7: test/cli/needle_options_test 686s 7/13 Test #7: test/cli/needle_options_test ...... Passed 0.01 sec 686s Start 8: test/cli/ibf_options_test 693s 8/13 Test #8: test/cli/ibf_options_test ......... Passed 6.92 sec 693s Start 9: test/cli/insert_options_test 696s 9/13 Test #9: test/cli/insert_options_test ...... Passed 3.79 sec 696s Start 10: test/cli/minimiser_options_test 696s 10/13 Test #10: test/cli/minimiser_options_test ... Passed 0.05 sec 696s Start 11: test/cli/estimate_options_test 710s 11/13 Test #11: test/cli/estimate_options_test .... Passed 13.49 sec 710s Start 12: test/cli/count_options_test 710s 12/13 Test #12: test/cli/count_options_test ....... Passed 0.05 sec 710s Start 13: test/cli/delete_options_test 717s 13/13 Test #13: test/cli/delete_options_test ...... Passed 6.85 sec 717s 717s 100% tests passed, 0 tests failed out of 13 717s 717s Total Test time (real) = 254.38 sec 717s autopkgtest [20:07:25]: test run-unit-tests: -----------------------] 718s autopkgtest [20:07:26]: test run-unit-tests: - - - - - - - - - - results - - - - - - - - - - 718s run-unit-tests PASS 718s autopkgtest [20:07:26]: @@@@@@@@@@@@@@@@@@@@ summary 718s run-unit-tests PASS 738s nova [W] Skipping flock in bos03-arm64 738s Creating nova instance adt-plucky-arm64-seqan-needle-20241112-195526-juju-7f2275-prod-proposed-migration-environment-15-2e452fbc-3f90-4f63-9817-ec7ed7e7b1d2 from image adt/ubuntu-plucky-arm64-server-20241112.img (UUID 4df7b401-f027-41b3-9930-f1a86e20d835)...