0s autopkgtest [16:35:55]: starting date and time: 2025-03-15 16:35:55+0000 0s autopkgtest [16:35:55]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:35:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.onrb3m58/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade samblaster --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-37.secgroup --name adt-plucky-arm64-samblaster-20250315-163555-juju-7f2275-prod-proposed-migration-environment-2-71a8f083-afd4-4637-8b24-e8495841e818 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 136s autopkgtest [16:38:11]: testbed dpkg architecture: arm64 137s autopkgtest [16:38:12]: testbed apt version: 2.9.33 137s autopkgtest [16:38:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 137s autopkgtest [16:38:12]: testbed release detected to be: None 138s autopkgtest [16:38:13]: updating testbed package index (apt update) 139s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 139s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 139s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 139s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 139s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 139s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 140s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 140s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 140s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 140s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 140s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 140s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 140s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 141s Fetched 1078 kB in 2s (595 kB/s) 142s Reading package lists... 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s Calculating upgrade... 145s Calculating upgrade... 145s The following packages will be upgraded: 145s pinentry-curses python3-jinja2 strace 146s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 647 kB of archives. 146s After this operation, 11.3 kB of additional disk space will be used. 146s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 146s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 146s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 147s Fetched 647 kB in 1s (623 kB/s) 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 147s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 147s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 147s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 147s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 147s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 148s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 148s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 148s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 148s Setting up strace (6.13+ds-1ubuntu1) ... 148s Processing triggers for man-db (2.13.0-1) ... 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Solving dependencies... 152s The following packages will be REMOVED: 152s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 152s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 152s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 152s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 152s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 152s After this operation, 267 MB disk space will be freed. 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 152s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 152s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 152s Removing libpython3.12t64:arm64 (3.12.9-1) ... 152s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 153s Removing libnsl2:arm64 (1.3.0-3build3) ... 153s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 153s Removing libunwind8:arm64 (1.6.2-3.1) ... 153s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 153s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 155s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 155s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 155s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 155s /etc/kernel/postrm.d/initramfs-tools: 155s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 155s /etc/kernel/postrm.d/zz-flash-kernel: 155s flash-kernel: Kernel 6.11.0-8-generic has been removed. 155s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 156s /etc/kernel/postrm.d/zz-update-grub: 156s Sourcing file `/etc/default/grub' 156s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 156s Generating grub configuration file ... 156s Found linux image: /boot/vmlinuz-6.14.0-10-generic 156s Found initrd image: /boot/initrd.img-6.14.0-10-generic 157s Warning: os-prober will not be executed to detect other bootable partitions. 157s Systems on them will not be added to the GRUB boot configuration. 157s Check GRUB_DISABLE_OS_PROBER documentation entry. 157s Adding boot menu entry for UEFI Firmware Settings ... 157s done 157s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 157s Processing triggers for libc-bin (2.41-1ubuntu1) ... 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 157s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 157s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 157s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 158s autopkgtest [16:38:33]: upgrading testbed (apt dist-upgrade and autopurge) 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s Entering ResolveByKeep 160s 160s Calculating upgrade... 161s The following packages will be upgraded: 161s libc-bin libc-dev-bin libc6 libc6-dev locales 161s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 161s Need to get 9530 kB of archives. 161s After this operation, 0 B of additional disk space will be used. 161s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 163s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 163s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 166s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 167s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 172s Preconfiguring packages ... 172s Fetched 9530 kB in 11s (892 kB/s) 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 172s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 172s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 173s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 173s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc6:arm64 (2.41-1ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 173s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 173s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 173s Setting up libc-bin (2.41-1ubuntu2) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 174s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 174s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 174s Setting up locales (2.41-1ubuntu2) ... 175s Generating locales (this might take a while)... 178s en_US.UTF-8... done 178s Generation complete. 178s Setting up libc-dev-bin (2.41-1ubuntu2) ... 178s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 178s Processing triggers for man-db (2.13.0-1) ... 179s Processing triggers for systemd (257.3-1ubuntu3) ... 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 181s Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 182s Solving dependencies... 183s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [16:38:58]: rebooting testbed after setup commands that affected boot 206s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 213s autopkgtest [16:39:28]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 216s autopkgtest [16:39:31]: @@@@@@@@@@@@@@@@@@@@ apt-source samblaster 218s Get:1 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (dsc) [2029 B] 218s Get:2 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (tar) [133 kB] 218s Get:3 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (diff) [5256 B] 218s gpgv: Signature made Tue Dec 6 14:37:10 2022 UTC 218s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 218s gpgv: issuer "tille@debian.org" 218s gpgv: Can't check signature: No public key 218s dpkg-source: warning: cannot verify inline signature for ./samblaster_0.1.26-4.dsc: no acceptable signature found 218s autopkgtest [16:39:33]: testing package samblaster version 0.1.26-4 219s autopkgtest [16:39:34]: build not needed 219s autopkgtest [16:39:34]: test run-unit-test: preparing testbed 219s Reading package lists... 220s Building dependency tree... 220s Reading state information... 220s Starting pkgProblemResolver with broken count: 0 220s Starting 2 pkgProblemResolver with broken count: 0 220s Done 221s The following NEW packages will be installed: 221s libdeflate0 libhts3t64 libhtscodecs2 samblaster samtools 221s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 221s Need to get 1203 kB of archives. 221s After this operation, 3475 kB of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 221s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 221s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 222s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 samblaster arm64 0.1.26-4 [23.7 kB] 222s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 samtools arm64 1.21-1 [609 kB] 223s Fetched 1203 kB in 2s (726 kB/s) 223s Selecting previously unselected package libdeflate0:arm64. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 223s Preparing to unpack .../libdeflate0_1.23-1_arm64.deb ... 223s Unpacking libdeflate0:arm64 (1.23-1) ... 223s Selecting previously unselected package libhtscodecs2:arm64. 223s Preparing to unpack .../libhtscodecs2_1.6.1-2_arm64.deb ... 223s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 223s Selecting previously unselected package libhts3t64:arm64. 223s Preparing to unpack .../libhts3t64_1.21+ds-1_arm64.deb ... 223s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 223s Selecting previously unselected package samblaster. 223s Preparing to unpack .../samblaster_0.1.26-4_arm64.deb ... 223s Unpacking samblaster (0.1.26-4) ... 223s Selecting previously unselected package samtools. 223s Preparing to unpack .../samtools_1.21-1_arm64.deb ... 223s Unpacking samtools (1.21-1) ... 223s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 223s Setting up samblaster (0.1.26-4) ... 223s Setting up libdeflate0:arm64 (1.23-1) ... 223s Setting up libhts3t64:arm64 (1.21+ds-1) ... 223s Setting up samtools (1.21-1) ... 223s Processing triggers for man-db (2.13.0-1) ... 224s Processing triggers for libc-bin (2.41-1ubuntu2) ... 225s autopkgtest [16:39:40]: test run-unit-test: [----------------------- 226s samblaster: Version 0.1.26 226s samblaster: Opening read.sam for read. 226s samblaster: Opening output for write. 226s samblaster: Loaded 2 header sequence entries. 226s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 226s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 226s samblaster: Found 2 of 12 (16.667%) total read ids are marked paired yet are unmated. 226s samblaster: Please double check that input file is read-id (QNAME) grouped. 226s samblaster: Marked 0 of 12 (0.000%) total read ids as duplicates using 3244k memory in 0.000S CPU seconds and 0S wall time. 226s PASS Test 226s autopkgtest [16:39:41]: test run-unit-test: -----------------------] 226s autopkgtest [16:39:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 226s run-unit-test PASS 227s autopkgtest [16:39:42]: @@@@@@@@@@@@@@@@@@@@ summary 227s run-unit-test PASS 245s nova [W] Using flock in prodstack6-arm64 245s Creating nova instance adt-plucky-arm64-samblaster-20250315-163555-juju-7f2275-prod-proposed-migration-environment-2-71a8f083-afd4-4637-8b24-e8495841e818 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 245s nova [W] Timed out waiting for e8880f8b-dd62-4027-a84d-86abf71c7c1d to get deleted.