0s autopkgtest [16:14:07]: starting date and time: 2025-03-15 16:14:07+0000 0s autopkgtest [16:14:07]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:14:07]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i1z8ft27/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade rna-star --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-43.secgroup --name adt-plucky-arm64-rna-star-20250315-161405-juju-7f2275-prod-proposed-migration-environment-15-b3c95585-e22e-45af-a1ff-551796cd4253 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 160s autopkgtest [16:16:47]: testbed dpkg architecture: arm64 161s autopkgtest [16:16:48]: testbed apt version: 2.9.33 161s autopkgtest [16:16:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 161s autopkgtest [16:16:48]: testbed release detected to be: None 162s autopkgtest [16:16:49]: updating testbed package index (apt update) 163s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 163s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 163s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 163s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 163s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 164s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 164s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 164s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 164s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 164s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 164s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 164s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 164s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 164s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 164s Fetched 1078 kB in 2s (619 kB/s) 165s Reading package lists... 166s + lsb_release --codename --short 166s + RELEASE=plucky 166s + cat 166s + [ plucky != trusty ] 166s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s Calculating upgrade... 169s Calculating upgrade... 169s The following packages will be upgraded: 169s pinentry-curses python3-jinja2 strace 169s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 647 kB of archives. 169s After this operation, 11.3 kB of additional disk space will be used. 169s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 171s Fetched 647 kB in 1s (700 kB/s) 171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 171s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 171s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 171s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 171s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 171s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 171s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 171s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 172s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 172s Setting up strace (6.13+ds-1ubuntu1) ... 172s Processing triggers for man-db (2.13.0-1) ... 173s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 173s + /usr/lib/apt/apt-helper analyze-pattern ?true 173s + uname -r 173s + sed s/\./\\./g 173s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 173s + apt list ?obsolete 173s + tail -n+2 173s + cut -d/ -f1 173s + grep -v ^linux-.*6\.14\.0-10-generic.* 173s + obsolete_pkgs=linux-headers-6.11.0-8-generic 173s linux-headers-6.11.0-8 173s linux-image-6.11.0-8-generic 173s linux-modules-6.11.0-8-generic 173s linux-tools-6.11.0-8-generic 173s linux-tools-6.11.0-8 174s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Solving dependencies... 175s The following packages will be REMOVED: 175s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 175s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 175s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 175s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 175s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 175s After this operation, 267 MB disk space will be freed. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 175s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 175s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 175s Removing libpython3.12t64:arm64 (3.12.9-1) ... 175s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 176s Removing libnsl2:arm64 (1.3.0-3build3) ... 176s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 176s Removing libunwind8:arm64 (1.6.2-3.1) ... 176s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 176s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 178s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 178s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 178s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 178s /etc/kernel/postrm.d/initramfs-tools: 178s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 178s /etc/kernel/postrm.d/zz-flash-kernel: 178s flash-kernel: Kernel 6.11.0-8-generic has been removed. 178s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 179s /etc/kernel/postrm.d/zz-update-grub: 179s Sourcing file `/etc/default/grub' 179s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 179s Generating grub configuration file ... 179s Found linux image: /boot/vmlinuz-6.14.0-10-generic 179s Found initrd image: /boot/initrd.img-6.14.0-10-generic 180s Warning: os-prober will not be executed to detect other bootable partitions. 180s Systems on them will not be added to the GRUB boot configuration. 180s Check GRUB_DISABLE_OS_PROBER documentation entry. 180s Adding boot menu entry for UEFI Firmware Settings ... 180s done 180s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 180s Processing triggers for libc-bin (2.41-1ubuntu1) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 180s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 180s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 180s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 180s + grep -q trusty /etc/lsb-release 180s + [ ! -d /usr/share/doc/unattended-upgrades ] 180s + [ ! -d /usr/share/doc/lxd ] 180s + [ ! -d /usr/share/doc/lxd-client ] 180s + [ ! -d /usr/share/doc/snapd ] 180s + type iptables 180s + cat 180s + chmod 755 /etc/rc.local 180s + . /etc/rc.local 180s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 180s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 180s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 180s + uname -m 180s + [ aarch64 = ppc64le ] 180s + [ -d /run/systemd/system ] 180s + systemd-detect-virt --quiet --vm 180s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 180s + cat 180s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 180s + echo COMPRESS=lz4 181s autopkgtest [16:17:08]: upgrading testbed (apt dist-upgrade and autopurge) 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 184s Entering ResolveByKeep 184s 185s Calculating upgrade... 186s The following packages will be upgraded: 186s libc-bin libc-dev-bin libc6 libc6-dev locales 186s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 9530 kB of archives. 186s After this operation, 0 B of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 188s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 188s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 191s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 191s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 196s Preconfiguring packages ... 196s Fetched 9530 kB in 10s (960 kB/s) 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 196s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 196s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up libc6:arm64 (2.41-1ubuntu2) ... 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 198s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 198s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Setting up libc-bin (2.41-1ubuntu2) ... 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 198s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 198s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Setting up locales (2.41-1ubuntu2) ... 199s Generating locales (this might take a while)... 201s en_US.UTF-8... done 201s Generation complete. 201s Setting up libc-dev-bin (2.41-1ubuntu2) ... 201s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 201s Processing triggers for man-db (2.13.0-1) ... 202s Processing triggers for systemd (257.3-1ubuntu3) ... 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 204s Starting pkgProblemResolver with broken count: 0 204s Starting 2 pkgProblemResolver with broken count: 0 204s Done 204s Solving dependencies... 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s autopkgtest [16:17:32]: rebooting testbed after setup commands that affected boot 229s autopkgtest [16:17:56]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 232s autopkgtest [16:17:59]: @@@@@@@@@@@@@@@@@@@@ apt-source rna-star 235s Get:1 http://ftpmaster.internal/ubuntu plucky/universe rna-star 2.7.11b+dfsg-2 (dsc) [2163 B] 235s Get:2 http://ftpmaster.internal/ubuntu plucky/universe rna-star 2.7.11b+dfsg-2 (tar) [521 kB] 235s Get:3 http://ftpmaster.internal/ubuntu plucky/universe rna-star 2.7.11b+dfsg-2 (diff) [379 kB] 236s gpgv: Signature made Fri Oct 25 14:36:25 2024 UTC 236s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 236s gpgv: Can't check signature: No public key 236s dpkg-source: warning: cannot verify inline signature for ./rna-star_2.7.11b+dfsg-2.dsc: no acceptable signature found 236s autopkgtest [16:18:03]: testing package rna-star version 2.7.11b+dfsg-2 237s autopkgtest [16:18:04]: build not needed 237s autopkgtest [16:18:04]: test command1: preparing testbed 237s Reading package lists... 238s Building dependency tree... 238s Reading state information... 239s Starting pkgProblemResolver with broken count: 0 239s Starting 2 pkgProblemResolver with broken count: 0 239s Done 240s The following NEW packages will be installed: 240s libdeflate0 libgomp1 libhts3t64 libhtscodecs2 rna-star 241s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 241s Need to get 1508 kB of archives. 241s After this operation, 4845 kB of additional disk space will be used. 241s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhtscodecs2 arm64 1.6.1-2 [82.7 kB] 241s Get:4 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhts3t64 arm64 1.21+ds-1 [441 kB] 241s Get:5 http://ftpmaster.internal/ubuntu plucky/universe arm64 rna-star arm64 2.7.11b+dfsg-2 [792 kB] 242s Fetched 1508 kB in 2s (961 kB/s) 242s Selecting previously unselected package libdeflate0:arm64. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 243s Preparing to unpack .../libdeflate0_1.23-1_arm64.deb ... 243s Unpacking libdeflate0:arm64 (1.23-1) ... 243s Selecting previously unselected package libgomp1:arm64. 243s Preparing to unpack .../libgomp1_15-20250222-0ubuntu1_arm64.deb ... 243s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 243s Selecting previously unselected package libhtscodecs2:arm64. 243s Preparing to unpack .../libhtscodecs2_1.6.1-2_arm64.deb ... 243s Unpacking libhtscodecs2:arm64 (1.6.1-2) ... 243s Selecting previously unselected package libhts3t64:arm64. 243s Preparing to unpack .../libhts3t64_1.21+ds-1_arm64.deb ... 243s Unpacking libhts3t64:arm64 (1.21+ds-1) ... 243s Selecting previously unselected package rna-star. 243s Preparing to unpack .../rna-star_2.7.11b+dfsg-2_arm64.deb ... 243s Unpacking rna-star (2.7.11b+dfsg-2) ... 243s Setting up libhtscodecs2:arm64 (1.6.1-2) ... 243s Setting up libdeflate0:arm64 (1.23-1) ... 243s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 243s Setting up libhts3t64:arm64 (1.21+ds-1) ... 243s Setting up rna-star (2.7.11b+dfsg-2) ... 243s Processing triggers for man-db (2.13.0-1) ... 244s Processing triggers for libc-bin (2.41-1ubuntu2) ... 245s autopkgtest [16:18:12]: test command1: debian/tests/run_test.sh STAR 245s autopkgtest [16:18:12]: test command1: [----------------------- 245s STAR --runThreadN 1 --runMode genomeGenerate --genomeDir . --genomeSAindexNbases 8 --genomeFastaFiles foo.fa --sjdbGTFfile /tmp/autopkgtest.1E1vHB/build.AH1/src/debian/tests/foo.gtf 245s STAR version: 2.7.11b compiled: 2024-10-25T14:34:57+00:00 245s Mar 15 16:18:14 ..... started STAR run 245s Mar 15 16:18:14 ... starting to generate Genome files 245s Mar 15 16:18:14 ..... processing annotations GTF 245s Mar 15 16:18:14 ... starting to sort Suffix Array. This may take a long time... 245s Mar 15 16:18:14 ... sorting Suffix Array chunks and saving them to disk... 245s !!!!! WARNING: --genomeSAindexNbases 8 is too large for the genome size=99940, which may cause seg-fault at the mapping step. Re-run genome generation with recommended --genomeSAindexNbases 7 245s Mar 15 16:18:14 ... loading chunks from disk, packing SA... 245s Mar 15 16:18:14 ... finished generating suffix array 245s Mar 15 16:18:14 ... generating Suffix Array index 245s Mar 15 16:18:14 ... completed Suffix Array index 245s Mar 15 16:18:14 ... writing Genome to disk ... 245s Mar 15 16:18:14 ... writing Suffix Array to disk ... 245s Mar 15 16:18:14 ... writing SAindex to disk 245s Mar 15 16:18:14 ..... finished successfully 245s STAR --runThreadN 1 --genomeDir . --readFilesIn reads.fastq 245s STAR version: 2.7.11b compiled: 2024-10-25T14:34:57+00:00 245s Mar 15 16:18:14 ..... started STAR run 245s Mar 15 16:18:14 ..... loading genome 245s Mar 15 16:18:14 ..... started mapping 246s Mar 15 16:18:14 ..... finished mapping 246s Mar 15 16:18:14 ..... finished successfully 246s autopkgtest [16:18:13]: test command1: -----------------------] 247s autopkgtest [16:18:14]: test command1: - - - - - - - - - - results - - - - - - - - - - 247s command1 PASS 247s autopkgtest [16:18:14]: @@@@@@@@@@@@@@@@@@@@ summary 247s command1 PASS 267s nova [W] Using flock in prodstack6-arm64 267s flock: timeout while waiting to get lock 267s Creating nova instance adt-plucky-arm64-rna-star-20250315-161405-juju-7f2275-prod-proposed-migration-environment-15-b3c95585-e22e-45af-a1ff-551796cd4253 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 267s nova [W] Timed out waiting for c4bbf538-0e23-4bc0-9a87-19fe8291a35a to get deleted.