0s autopkgtest [16:11:40]: starting date and time: 2025-03-15 16:11:40+0000 0s autopkgtest [16:11:40]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:11:40]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rwwfll8a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade repeatmasker-recon --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-17.secgroup --name adt-plucky-arm64-repeatmasker-recon-20250315-161140-juju-7f2275-prod-proposed-migration-environment-20-6e627ad4-54da-4f66-9464-1833026750ea --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 168s autopkgtest [16:14:28]: testbed dpkg architecture: arm64 168s autopkgtest [16:14:28]: testbed apt version: 2.9.33 169s autopkgtest [16:14:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 169s autopkgtest [16:14:29]: testbed release detected to be: None 170s autopkgtest [16:14:30]: updating testbed package index (apt update) 170s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 171s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 171s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 171s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 171s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 171s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 171s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 172s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 172s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 172s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 172s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 173s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 173s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 173s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 173s Fetched 1078 kB in 3s (365 kB/s) 174s Reading package lists... 175s Reading package lists... 175s Building dependency tree... 175s Reading state information... 176s Calculating upgrade... 176s Calculating upgrade... 176s The following packages will be upgraded: 176s pinentry-curses python3-jinja2 strace 176s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 176s Need to get 647 kB of archives. 176s After this operation, 11.3 kB of additional disk space will be used. 176s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 177s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 177s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 178s Fetched 647 kB in 1s (580 kB/s) 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 178s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 178s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 178s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 178s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 178s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 178s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 178s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 178s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 179s Setting up strace (6.13+ds-1ubuntu1) ... 179s Processing triggers for man-db (2.13.0-1) ... 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Solving dependencies... 180s The following packages will be REMOVED: 180s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 180s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 180s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 180s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 181s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 181s After this operation, 267 MB disk space will be freed. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 181s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 181s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 181s Removing libpython3.12t64:arm64 (3.12.9-1) ... 181s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 181s Removing libnsl2:arm64 (1.3.0-3build3) ... 181s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 181s Removing libunwind8:arm64 (1.6.2-3.1) ... 181s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 182s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 184s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 184s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 184s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 184s /etc/kernel/postrm.d/initramfs-tools: 184s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 184s /etc/kernel/postrm.d/zz-flash-kernel: 184s flash-kernel: Kernel 6.11.0-8-generic has been removed. 184s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 185s /etc/kernel/postrm.d/zz-update-grub: 185s Sourcing file `/etc/default/grub' 185s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 185s Generating grub configuration file ... 185s Found linux image: /boot/vmlinuz-6.14.0-10-generic 185s Found initrd image: /boot/initrd.img-6.14.0-10-generic 185s Warning: os-prober will not be executed to detect other bootable partitions. 185s Systems on them will not be added to the GRUB boot configuration. 185s Check GRUB_DISABLE_OS_PROBER documentation entry. 185s Adding boot menu entry for UEFI Firmware Settings ... 185s done 185s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 186s Processing triggers for libc-bin (2.41-1ubuntu1) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 186s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 186s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 186s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 186s autopkgtest [16:14:46]: upgrading testbed (apt dist-upgrade and autopurge) 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 188s Entering ResolveByKeep 188s 188s Calculating upgrade... 189s The following packages will be upgraded: 189s libc-bin libc-dev-bin libc6 libc6-dev locales 189s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 9530 kB of archives. 189s After this operation, 0 B of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 191s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 191s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 195s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 196s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 201s Preconfiguring packages ... 201s Fetched 9530 kB in 11s (839 kB/s) 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 201s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 201s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 201s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 201s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 202s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Setting up libc6:arm64 (2.41-1ubuntu2) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 202s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 202s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 202s Setting up libc-bin (2.41-1ubuntu2) ... 202s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 202s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 202s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 203s Setting up locales (2.41-1ubuntu2) ... 204s Generating locales (this might take a while)... 207s en_US.UTF-8... done 207s Generation complete. 207s Setting up libc-dev-bin (2.41-1ubuntu2) ... 207s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 207s Processing triggers for man-db (2.13.0-1) ... 208s Processing triggers for systemd (257.3-1ubuntu3) ... 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 210s Starting pkgProblemResolver with broken count: 0 210s Starting 2 pkgProblemResolver with broken count: 0 210s Done 211s Solving dependencies... 211s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 211s autopkgtest [16:15:11]: rebooting testbed after setup commands that affected boot 234s autopkgtest [16:15:34]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 237s autopkgtest [16:15:37]: @@@@@@@@@@@@@@@@@@@@ apt-source repeatmasker-recon 239s Get:1 http://ftpmaster.internal/ubuntu plucky/universe repeatmasker-recon 1.08-8 (dsc) [2070 B] 239s Get:2 http://ftpmaster.internal/ubuntu plucky/universe repeatmasker-recon 1.08-8 (tar) [108 kB] 239s Get:3 http://ftpmaster.internal/ubuntu plucky/universe repeatmasker-recon 1.08-8 (diff) [5980 B] 239s gpgv: Signature made Wed Mar 13 15:02:02 2024 UTC 239s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 239s gpgv: Can't check signature: No public key 239s dpkg-source: warning: cannot verify inline signature for ./repeatmasker-recon_1.08-8.dsc: no acceptable signature found 240s autopkgtest [16:15:40]: testing package repeatmasker-recon version 1.08-8 240s autopkgtest [16:15:40]: build not needed 240s autopkgtest [16:15:40]: test run-unit-test: preparing testbed 240s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Starting pkgProblemResolver with broken count: 0 241s Starting 2 pkgProblemResolver with broken count: 0 241s Done 242s The following NEW packages will be installed: 242s repeatmasker-recon 242s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 242s Need to get 90.1 kB of archives. 242s After this operation, 672 kB of additional disk space will be used. 242s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 repeatmasker-recon arm64 1.08-8 [90.1 kB] 243s Fetched 90.1 kB in 0s (237 kB/s) 243s Selecting previously unselected package repeatmasker-recon. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 243s Preparing to unpack .../repeatmasker-recon_1.08-8_arm64.deb ... 243s Unpacking repeatmasker-recon (1.08-8) ... 243s Setting up repeatmasker-recon (1.08-8) ... 243s Processing triggers for man-db (2.13.0-1) ... 245s autopkgtest [16:15:45]: test run-unit-test: [----------------------- 245s Test Functionality 247s 6 25 1 ChrI 11106918 11109261 247s 6 31 1 ChrI 12899689 12902031 247s 6 40 -1 ChrII 466064 468405 247s 6 49 -1 ChrII 3919509 3921851 247s 6 54 1 ChrII 7492066 7494410 247s 6 80 -1 ChrIV 1196892 1199236 247s 6 204 1 ChrI 457414 459757 247s 6 208 1 ChrI 9599189 9601530 247s 6 211 1 ChrII 15993 18334 247s 6 212 -1 ChrII 2961937 2964280 247s 6 213 -1 ChrII 3210897 3213240 247s 6 214 -1 ChrII 7068729 7071072 247s 6 218 -1 ChrIII 8134611 8136952 247s 6 219 -1 ChrIV 12305535 12307878 247s 6 220 -1 ChrIV 13517354 13519697 247s 6 223 1 ChrV 17019617 17021960 247s 6 224 -1 ChrV 18256414 18258756 247s 6 151 -1 ChrV 18594130 18595569 247s 6 225 -1 ChrV 18593379 18594138 247s 6 158 -1 ChrX 2879613 2880344 247s 6 30 1 ChrI 12640668 12640850 247s 6 157 -1 ChrX 2878776 2879615 247s 6 159 -1 ChrX 2880351 2880555 247s 6 210 -1 ChrI 12639993 12640540 247s 6 227 -1 ChrX 13552995 13553907 247s 6 186 -1 ChrX 13553906 13554422 247s PASS 247s autopkgtest [16:15:47]: test run-unit-test: -----------------------] 247s autopkgtest [16:15:47]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 247s run-unit-test PASS 248s autopkgtest [16:15:48]: @@@@@@@@@@@@@@@@@@@@ summary 248s run-unit-test PASS 252s nova [W] Using flock in prodstack6-arm64 252s flock: timeout while waiting to get lock 252s Creating nova instance adt-plucky-arm64-repeatmasker-recon-20250315-161140-juju-7f2275-prod-proposed-migration-environment-20-6e627ad4-54da-4f66-9464-1833026750ea from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 252s nova [W] Timed out waiting for afe14bb0-2b1d-43a1-aa11-44a9f6210405 to get deleted.