0s autopkgtest [05:45:43]: starting date and time: 2025-03-13 05:45:43+0000 0s autopkgtest [05:45:43]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [05:45:43]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.th8dkrpe/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rdkit --apt-upgrade rdkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rdkit/202409.6-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-22.secgroup --name adt-plucky-arm64-rdkit-20250313-054543-juju-7f2275-prod-proposed-migration-environment-15-d469a3e4-2852-4a97-8a54-3cd181114fe1 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 102s autopkgtest [05:47:25]: testbed dpkg architecture: arm64 102s autopkgtest [05:47:25]: testbed apt version: 2.9.32ubuntu1 102s autopkgtest [05:47:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s autopkgtest [05:47:25]: testbed release detected to be: None 103s autopkgtest [05:47:26]: updating testbed package index (apt update) 103s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.8 kB] 104s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 104s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [453 kB] 104s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [56.4 kB] 104s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [357 kB] 104s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [3244 B] 104s Fetched 1037 kB in 1s (1056 kB/s) 105s Reading package lists... 106s + lsb_release --codename --short 106s + RELEASE=plucky 106s + cat 106s + [ plucky != trusty ] 106s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 109s Calculating upgrade... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 109s + /usr/lib/apt/apt-helper analyze-pattern ?true 109s + + sed s/\./\\./g 109s uname -r 109s + running_kernel_pattern=^linux-.*6\.14\.0-7-generic.* 109s + apt list ?obsolete 109s + tail -n+2 109s + cut -d/ -f1 109s + grep -v ^linux-.*6\.14\.0-7-generic.* 110s + true 110s + obsolete_pkgs= 110s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s Solving dependencies... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s + grep -q trusty /etc/lsb-release 112s + [ ! -d /usr/share/doc/unattended-upgrades ] 112s + [ ! -d /usr/share/doc/lxd ] 112s + [ ! -d /usr/share/doc/lxd-client ] 112s + [ ! -d /usr/share/doc/snapd ] 112s + type iptables 112s + cat 112s + chmod 755 /etc/rc.local 112s + . /etc/rc.local 112s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 112s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 112s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 112s + uname -m 112s + [ aarch64 = ppc64le ] 112s + [ -d /run/systemd/system ] 112s + systemd-detect-virt --quiet --vm 112s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 112s + cat 112s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 112s + echo COMPRESS=lz4 112s autopkgtest [05:47:35]: upgrading testbed (apt dist-upgrade and autopurge) 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 115s Entering ResolveByKeep 116s 116s Calculating upgrade... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s Solving dependencies... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [05:47:46]: testbed running kernel: Linux 6.14.0-7-generic #7-Ubuntu SMP PREEMPT_DYNAMIC Fri Feb 28 11:47:29 UTC 2025 123s autopkgtest [05:47:46]: @@@@@@@@@@@@@@@@@@@@ apt-source rdkit 179s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe rdkit 202409.6-2 (dsc) [3055 B] 180s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe rdkit 202409.6-2 (tar) [63.5 MB] 180s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe rdkit 202409.6-2 (diff) [40.0 kB] 180s gpgv: Signature made Sun Mar 9 10:04:40 2025 UTC 180s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 180s gpgv: Can't check signature: No public key 180s dpkg-source: warning: cannot verify inline signature for ./rdkit_202409.6-2.dsc: no acceptable signature found 183s autopkgtest [05:48:46]: testing package rdkit version 202409.6-2 184s autopkgtest [05:48:47]: build not needed 193s autopkgtest [05:48:56]: test installcheck: preparing testbed 193s Reading package lists... 194s Building dependency tree... 194s Reading state information... 194s Starting pkgProblemResolver with broken count: 0 194s Starting 2 pkgProblemResolver with broken count: 0 194s Done 196s The following NEW packages will be installed: 196s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 196s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 196s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 196s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 196s liblapack3 libllvm20 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev 196s librdkit1t64 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 196s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 196s postgresql-common postgresql-common-dev python3-numpy python3-numpy-dev 196s python3-rdkit rdkit-data rdkit-doc ssl-cert 196s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 92.4 MB of archives. 196s After this operation, 460 MB of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-client-common all 274 [47.6 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-pty-perl arm64 1:1.20-1build3 [31.3 kB] 196s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libipc-run-perl all 20231003.0-2 [91.5 kB] 196s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-common-dev all 274 [73.0 kB] 197s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 197s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-common all 274 [101 kB] 197s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-4 [146 kB] 197s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 197s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 197s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 199s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-4 [3982 kB] 201s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 205s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 205s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.1ubuntu1 [259 kB] 205s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-python1.83.0 arm64 1.83.0-4.1ubuntu1 [323 kB] 205s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-numpy1.83.0 arm64 1.83.0-4.1ubuntu1 [242 kB] 205s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-4.1ubuntu1 [338 kB] 205s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 205s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 205s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 205s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 205s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 205s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 206s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcoordgen3 arm64 3.0.2-1 [207 kB] 206s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libinchi1.07 arm64 1.07.2+dfsg-1 [573 kB] 206s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 206s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 206s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libllvm20 arm64 1:20.1.0~+rc2-1~exp2ubuntu0.4 [29.1 MB] 215s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 216s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.4-1 [142 kB] 216s Get:32 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 librdkit1t64 arm64 202409.6-2 [5378 kB] 217s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 librdkit-dev arm64 202409.6-2 [348 kB] 217s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 217s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-client-17 arm64 17.4-1 [1342 kB] 217s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-17 arm64 17.4-1 [15.6 MB] 222s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 postgresql-17-rdkit arm64 202409.6-2 [121 kB] 222s Get:38 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 rdkit-data all 202409.6-2 [12.6 MB] 226s Get:39 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-rdkit arm64 202409.6-2 [4679 kB] 228s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 rdkit-doc all 202409.6-2 [6347 kB] 232s Preconfiguring packages ... 232s Fetched 92.4 MB in 35s (2628 kB/s) 232s Selecting previously unselected package libjson-perl. 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117763 files and directories currently installed.) 232s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 232s Unpacking libjson-perl (4.10000-1) ... 232s Selecting previously unselected package postgresql-client-common. 232s Preparing to unpack .../01-postgresql-client-common_274_all.deb ... 232s Unpacking postgresql-client-common (274) ... 232s Selecting previously unselected package libio-pty-perl. 232s Preparing to unpack .../02-libio-pty-perl_1%3a1.20-1build3_arm64.deb ... 232s Unpacking libio-pty-perl (1:1.20-1build3) ... 232s Selecting previously unselected package libipc-run-perl. 232s Preparing to unpack .../03-libipc-run-perl_20231003.0-2_all.deb ... 232s Unpacking libipc-run-perl (20231003.0-2) ... 232s Selecting previously unselected package postgresql-common-dev. 232s Preparing to unpack .../04-postgresql-common-dev_274_all.deb ... 232s Unpacking postgresql-common-dev (274) ... 232s Selecting previously unselected package ssl-cert. 233s Preparing to unpack .../05-ssl-cert_1.1.3ubuntu1_all.deb ... 233s Unpacking ssl-cert (1.1.3ubuntu1) ... 233s Selecting previously unselected package postgresql-common. 233s Preparing to unpack .../06-postgresql-common_274_all.deb ... 233s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 233s Unpacking postgresql-common (274) ... 233s Selecting previously unselected package python3-numpy-dev:arm64. 233s Preparing to unpack .../07-python3-numpy-dev_1%3a2.2.3+ds-4_arm64.deb ... 233s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-4) ... 233s Selecting previously unselected package libblas3:arm64. 233s Preparing to unpack .../08-libblas3_3.12.1-2_arm64.deb ... 233s Unpacking libblas3:arm64 (3.12.1-2) ... 233s Selecting previously unselected package libgfortran5:arm64. 233s Preparing to unpack .../09-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 233s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 233s Selecting previously unselected package liblapack3:arm64. 233s Preparing to unpack .../10-liblapack3_3.12.1-2_arm64.deb ... 233s Unpacking liblapack3:arm64 (3.12.1-2) ... 233s Selecting previously unselected package python3-numpy. 233s Preparing to unpack .../11-python3-numpy_1%3a2.2.3+ds-4_arm64.deb ... 233s Unpacking python3-numpy (1:2.2.3+ds-4) ... 233s Selecting previously unselected package fonts-freefont-ttf. 233s Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 233s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 233s Selecting previously unselected package fontconfig-config. 233s Preparing to unpack .../13-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 234s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 234s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 234s Preparing to unpack .../14-libboost-iostreams1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 234s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 234s Selecting previously unselected package libboost-python1.83.0. 234s Preparing to unpack .../15-libboost-python1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 234s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 234s Selecting previously unselected package libboost-numpy1.83.0. 234s Preparing to unpack .../16-libboost-numpy1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 234s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 234s Selecting previously unselected package libboost-serialization1.83.0:arm64. 234s Preparing to unpack .../17-libboost-serialization1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 234s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 234s Selecting previously unselected package libfontconfig1:arm64. 234s Preparing to unpack .../18-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 234s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 234s Selecting previously unselected package libpixman-1-0:arm64. 234s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_arm64.deb ... 234s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 234s Selecting previously unselected package libxcb-render0:arm64. 234s Preparing to unpack .../20-libxcb-render0_1.17.0-2_arm64.deb ... 234s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 234s Selecting previously unselected package libxcb-shm0:arm64. 234s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_arm64.deb ... 234s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 234s Selecting previously unselected package libxrender1:arm64. 234s Preparing to unpack .../22-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 234s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 235s Selecting previously unselected package libcairo2:arm64. 235s Preparing to unpack .../23-libcairo2_1.18.2-2_arm64.deb ... 235s Unpacking libcairo2:arm64 (1.18.2-2) ... 235s Selecting previously unselected package libcoordgen3:arm64. 235s Preparing to unpack .../24-libcoordgen3_3.0.2-1_arm64.deb ... 235s Unpacking libcoordgen3:arm64 (3.0.2-1) ... 235s Selecting previously unselected package libinchi1.07. 235s Preparing to unpack .../25-libinchi1.07_1.07.2+dfsg-1_arm64.deb ... 235s Unpacking libinchi1.07 (1.07.2+dfsg-1) ... 235s Selecting previously unselected package libjs-jquery. 235s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 235s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 235s Selecting previously unselected package libjs-underscore. 235s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 235s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 235s Selecting previously unselected package libllvm20:arm64. 235s Preparing to unpack .../28-libllvm20_1%3a20.1.0~+rc2-1~exp2ubuntu0.4_arm64.deb ... 235s Unpacking libllvm20:arm64 (1:20.1.0~+rc2-1~exp2ubuntu0.4) ... 236s Selecting previously unselected package libmaeparser1:arm64. 236s Preparing to unpack .../29-libmaeparser1_1.3.1-1build1_arm64.deb ... 236s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 236s Selecting previously unselected package libpq5:arm64. 236s Preparing to unpack .../30-libpq5_17.4-1_arm64.deb ... 236s Unpacking libpq5:arm64 (17.4-1) ... 236s Selecting previously unselected package librdkit1t64. 236s Preparing to unpack .../31-librdkit1t64_202409.6-2_arm64.deb ... 236s Unpacking librdkit1t64 (202409.6-2) ... 236s Selecting previously unselected package librdkit-dev. 236s Preparing to unpack .../32-librdkit-dev_202409.6-2_arm64.deb ... 236s Unpacking librdkit-dev (202409.6-2) ... 236s Selecting previously unselected package libxslt1.1:arm64. 236s Preparing to unpack .../33-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 236s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 236s Selecting previously unselected package postgresql-client-17. 236s Preparing to unpack .../34-postgresql-client-17_17.4-1_arm64.deb ... 236s Unpacking postgresql-client-17 (17.4-1) ... 237s Selecting previously unselected package postgresql-17. 237s Preparing to unpack .../35-postgresql-17_17.4-1_arm64.deb ... 237s Unpacking postgresql-17 (17.4-1) ... 237s Selecting previously unselected package postgresql-17-rdkit. 237s Preparing to unpack .../36-postgresql-17-rdkit_202409.6-2_arm64.deb ... 237s Unpacking postgresql-17-rdkit (202409.6-2) ... 237s Selecting previously unselected package rdkit-data. 237s Preparing to unpack .../37-rdkit-data_202409.6-2_all.deb ... 237s Unpacking rdkit-data (202409.6-2) ... 238s Selecting previously unselected package python3-rdkit. 238s Preparing to unpack .../38-python3-rdkit_202409.6-2_arm64.deb ... 238s Unpacking python3-rdkit (202409.6-2) ... 238s Selecting previously unselected package rdkit-doc. 238s Preparing to unpack .../39-rdkit-doc_202409.6-2_all.deb ... 238s Unpacking rdkit-doc (202409.6-2) ... 239s Setting up postgresql-client-common (274) ... 239s Setting up libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 239s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 239s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 239s Setting up libio-pty-perl (1:1.20-1build3) ... 239s Setting up libxcb-render0:arm64 (1.17.0-2) ... 239s Setting up libpq5:arm64 (17.4-1) ... 239s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 239s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 239s Setting up rdkit-data (202409.6-2) ... 239s Setting up libboost-serialization1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 239s Setting up libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 239s Setting up libblas3:arm64 (3.12.1-2) ... 239s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 239s Setting up ssl-cert (1.1.3ubuntu1) ... 240s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 240s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 240s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-4) ... 240s Setting up libllvm20:arm64 (1:20.1.0~+rc2-1~exp2ubuntu0.4) ... 240s Setting up libipc-run-perl (20231003.0-2) ... 240s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 240s Setting up libjson-perl (4.10000-1) ... 240s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 240s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 240s Setting up libcoordgen3:arm64 (3.0.2-1) ... 240s Setting up libinchi1.07 (1.07.2+dfsg-1) ... 240s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 240s Setting up postgresql-common-dev (274) ... 240s Setting up liblapack3:arm64 (3.12.1-2) ... 240s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 240s Setting up postgresql-client-17 (17.4-1) ... 241s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 241s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 241s Setting up rdkit-doc (202409.6-2) ... 241s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 241s Setting up postgresql-common (274) ... 242s Creating config file /etc/postgresql-common/createcluster.conf with new version 242s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 242s Removing obsolete dictionary files: 243s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 244s Setting up python3-numpy (1:2.2.3+ds-4) ... 247s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 247s Setting up postgresql-17 (17.4-1) ... 248s Creating new PostgreSQL cluster 17/main ... 248s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 248s The files belonging to this database system will be owned by user "postgres". 248s This user must also own the server process. 248s 248s The database cluster will be initialized with locale "C.UTF-8". 248s The default database encoding has accordingly been set to "UTF8". 248s The default text search configuration will be set to "english". 248s 248s Data page checksums are disabled. 248s 248s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 248s creating subdirectories ... ok 248s selecting dynamic shared memory implementation ... posix 248s selecting default "max_connections" ... 100 248s selecting default "shared_buffers" ... 128MB 248s selecting default time zone ... Etc/UTC 248s creating configuration files ... ok 249s running bootstrap script ... ok 249s performing post-bootstrap initialization ... ok 249s syncing data to disk ... ok 253s Setting up libcairo2:arm64 (1.18.2-2) ... 253s Setting up librdkit1t64 (202409.6-2) ... 253s Setting up postgresql-17-rdkit (202409.6-2) ... 253s Setting up python3-rdkit (202409.6-2) ... 254s Setting up librdkit-dev (202409.6-2) ... 254s Processing triggers for man-db (2.13.0-1) ... 255s Processing triggers for libc-bin (2.41-1ubuntu1) ... 258s autopkgtest [05:50:01]: test installcheck: [----------------------- 258s ### PostgreSQL 17 installcheck ### 258s Creating new PostgreSQL cluster 17/regress ... 261s make: Entering directory '/tmp/autopkgtest.486pkU/build.d0D/src/Code/PgSQL/rdkit' 261s echo "# +++ regress install-check in +++" && /usr/lib/postgresql/17/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress --inputdir=/tmp/autopkgtest.486pkU/build.d0D/src --bindir='/usr/lib/postgresql/17/bin' --dbname=contrib_regression rdkit-91 props btree molgist bfpgist-91 bfpgin sfpgist slfpgist fps reaction fmcs query xqm 261s # +++ regress install-check in +++ 261s # using postmaster on localhost, port 5433 265s ok 1 - rdkit-91 3109 ms 265s ok 2 - props 123 ms 265s ok 3 - btree 466 ms 267s ok 4 - molgist 1474 ms 267s ok 5 - bfpgist-91 116 ms 267s ok 6 - bfpgin 206 ms 267s ok 7 - sfpgist 98 ms 267s ok 8 - slfpgist 105 ms 267s ok 9 - fps 123 ms 271s ok 10 - reaction 3324 ms 271s ok 11 - fmcs 237 ms 271s ok 12 - query 63 ms 271s ok 13 - xqm 314 ms 271s 1..13 271s # All 13 tests passed. 271s make: Leaving directory '/tmp/autopkgtest.486pkU/build.d0D/src/Code/PgSQL/rdkit' 271s Dropping cluster 17/regress ... 272s ### End 17 installcheck ### 272s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 272s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 272s autopkgtest [05:50:15]: test installcheck: -----------------------] 273s installcheck PASS 273s autopkgtest [05:50:16]: test installcheck: - - - - - - - - - - results - - - - - - - - - - 274s autopkgtest [05:50:17]: test importcheck: preparing testbed 415s autopkgtest [05:52:38]: testbed dpkg architecture: arm64 416s autopkgtest [05:52:39]: testbed apt version: 2.9.32ubuntu1 416s autopkgtest [05:52:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 416s autopkgtest [05:52:39]: testbed release detected to be: plucky 417s autopkgtest [05:52:40]: updating testbed package index (apt update) 418s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 418s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 418s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 418s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 418s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB] 418s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [453 kB] 418s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.8 kB] 418s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [56.4 kB] 418s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [357 kB] 418s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [3244 B] 419s Fetched 1037 kB in 1s (1102 kB/s) 420s Reading package lists... 421s + lsb_release --codename --short 421s + RELEASE=plucky 421s + cat 421s + [ plucky != trusty ] 421s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 421s Reading package lists... 422s Building dependency tree... 422s Reading state information... 422s Calculating upgrade... 423s Calculating upgrade... 423s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 423s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 423s + /usr/lib/apt/apt-helper analyze-pattern ?true 423s + + sed s/\./\\./g 423s uname -r 423s + running_kernel_pattern=^linux-.*6\.14\.0-7-generic.* 423s + + tail -n+2 423s apt list ?obsolete 423s + cut+ -d/ -f1 423s grep -v ^linux-.*6\.14\.0-7-generic.* 424s + true 424s + obsolete_pkgs= 424s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 424s Reading package lists... 424s Building dependency tree... 424s Reading state information... 425s Solving dependencies... 425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s + grep -q trusty /etc/lsb-release 425s + [ ! -d /usr/share/doc/unattended-upgrades ] 425s + [ ! -d /usr/share/doc/lxd ] 425s + [ ! -d /usr/share/doc/lxd-client ] 425s + [ ! -d /usr/share/doc/snapd ] 425s + type iptables 425s + cat 425s + chmod 755 /etc/rc.local 425s + . /etc/rc.local 425s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 425s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 425s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 425s + uname -m 425s + [ aarch64 = ppc64le ] 425s + [ -d /run/systemd/system ] 425s + systemd-detect-virt --quiet --vm 425s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 425s + cat 425s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 425s + echo COMPRESS=lz4 425s autopkgtest [05:52:48]: upgrading testbed (apt dist-upgrade and autopurge) 425s Reading package lists... 426s Building dependency tree... 426s Reading state information... 426s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 427s Starting 2 pkgProblemResolver with broken count: 0 427s Done 427s Entering ResolveByKeep 428s 428s Calculating upgrade... 428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 429s Reading package lists... 429s Building dependency tree... 429s Reading state information... 429s Starting pkgProblemResolver with broken count: 0 429s Starting 2 pkgProblemResolver with broken count: 0 429s Done 430s Solving dependencies... 430s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 434s Reading package lists... 434s Building dependency tree... 434s Reading state information... 435s Starting pkgProblemResolver with broken count: 0 435s Starting 2 pkgProblemResolver with broken count: 0 435s Done 436s The following NEW packages will be installed: 436s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 436s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 436s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 436s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 436s liblapack3 libllvm20 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev 436s librdkit1t64 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 436s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 436s postgresql-common postgresql-common-dev python3-numpy python3-numpy-dev 436s python3-rdkit rdkit-data rdkit-doc ssl-cert 436s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 436s Need to get 92.4 MB of archives. 436s After this operation, 460 MB of additional disk space will be used. 436s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 436s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-client-common all 274 [47.6 kB] 436s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-pty-perl arm64 1:1.20-1build3 [31.3 kB] 436s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libipc-run-perl all 20231003.0-2 [91.5 kB] 436s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-common-dev all 274 [73.0 kB] 436s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 436s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-common all 274 [101 kB] 436s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-4 [146 kB] 436s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 436s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 436s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 437s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:2.2.3+ds-4 [3982 kB] 437s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 437s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 437s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-iostreams1.83.0 arm64 1.83.0-4.1ubuntu1 [259 kB] 437s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-python1.83.0 arm64 1.83.0-4.1ubuntu1 [323 kB] 437s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-numpy1.83.0 arm64 1.83.0-4.1ubuntu1 [242 kB] 437s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libboost-serialization1.83.0 arm64 1.83.0-4.1ubuntu1 [338 kB] 437s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 437s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 437s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 437s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 437s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 437s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 437s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcoordgen3 arm64 3.0.2-1 [207 kB] 437s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libinchi1.07 arm64 1.07.2+dfsg-1 [573 kB] 437s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 437s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 437s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libllvm20 arm64 1:20.1.0~+rc2-1~exp2ubuntu0.4 [29.1 MB] 440s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmaeparser1 arm64 1.3.1-1build1 [84.5 kB] 440s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.4-1 [142 kB] 440s Get:32 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 librdkit1t64 arm64 202409.6-2 [5378 kB] 440s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 librdkit-dev arm64 202409.6-2 [348 kB] 440s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu2 [168 kB] 440s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-client-17 arm64 17.4-1 [1342 kB] 440s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 postgresql-17 arm64 17.4-1 [15.6 MB] 441s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 postgresql-17-rdkit arm64 202409.6-2 [121 kB] 441s Get:38 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 rdkit-data all 202409.6-2 [12.6 MB] 442s Get:39 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-rdkit arm64 202409.6-2 [4679 kB] 442s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 rdkit-doc all 202409.6-2 [6347 kB] 443s Preconfiguring packages ... 443s Fetched 92.4 MB in 7s (13.1 MB/s) 443s Selecting previously unselected package libjson-perl. 444s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117763 files and directories currently installed.) 444s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 444s Unpacking libjson-perl (4.10000-1) ... 444s Selecting previously unselected package postgresql-client-common. 444s Preparing to unpack .../01-postgresql-client-common_274_all.deb ... 444s Unpacking postgresql-client-common (274) ... 444s Selecting previously unselected package libio-pty-perl. 444s Preparing to unpack .../02-libio-pty-perl_1%3a1.20-1build3_arm64.deb ... 444s Unpacking libio-pty-perl (1:1.20-1build3) ... 444s Selecting previously unselected package libipc-run-perl. 444s Preparing to unpack .../03-libipc-run-perl_20231003.0-2_all.deb ... 444s Unpacking libipc-run-perl (20231003.0-2) ... 444s Selecting previously unselected package postgresql-common-dev. 444s Preparing to unpack .../04-postgresql-common-dev_274_all.deb ... 444s Unpacking postgresql-common-dev (274) ... 444s Selecting previously unselected package ssl-cert. 444s Preparing to unpack .../05-ssl-cert_1.1.3ubuntu1_all.deb ... 444s Unpacking ssl-cert (1.1.3ubuntu1) ... 444s Selecting previously unselected package postgresql-common. 444s Preparing to unpack .../06-postgresql-common_274_all.deb ... 444s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 444s Unpacking postgresql-common (274) ... 444s Selecting previously unselected package python3-numpy-dev:arm64. 444s Preparing to unpack .../07-python3-numpy-dev_1%3a2.2.3+ds-4_arm64.deb ... 444s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-4) ... 444s Selecting previously unselected package libblas3:arm64. 444s Preparing to unpack .../08-libblas3_3.12.1-2_arm64.deb ... 444s Unpacking libblas3:arm64 (3.12.1-2) ... 444s Selecting previously unselected package libgfortran5:arm64. 444s Preparing to unpack .../09-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 444s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 444s Selecting previously unselected package liblapack3:arm64. 444s Preparing to unpack .../10-liblapack3_3.12.1-2_arm64.deb ... 444s Unpacking liblapack3:arm64 (3.12.1-2) ... 444s Selecting previously unselected package python3-numpy. 444s Preparing to unpack .../11-python3-numpy_1%3a2.2.3+ds-4_arm64.deb ... 444s Unpacking python3-numpy (1:2.2.3+ds-4) ... 445s Selecting previously unselected package fonts-freefont-ttf. 445s Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 445s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 445s Selecting previously unselected package fontconfig-config. 445s Preparing to unpack .../13-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 445s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 445s Selecting previously unselected package libboost-iostreams1.83.0:arm64. 445s Preparing to unpack .../14-libboost-iostreams1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 445s Unpacking libboost-iostreams1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 445s Selecting previously unselected package libboost-python1.83.0. 445s Preparing to unpack .../15-libboost-python1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 445s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 445s Selecting previously unselected package libboost-numpy1.83.0. 445s Preparing to unpack .../16-libboost-numpy1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 445s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 445s Selecting previously unselected package libboost-serialization1.83.0:arm64. 445s Preparing to unpack .../17-libboost-serialization1.83.0_1.83.0-4.1ubuntu1_arm64.deb ... 445s Unpacking libboost-serialization1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 445s Selecting previously unselected package libfontconfig1:arm64. 445s Preparing to unpack .../18-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 445s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 445s Selecting previously unselected package libpixman-1-0:arm64. 445s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_arm64.deb ... 445s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 445s Selecting previously unselected package libxcb-render0:arm64. 445s Preparing to unpack .../20-libxcb-render0_1.17.0-2_arm64.deb ... 445s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 445s Selecting previously unselected package libxcb-shm0:arm64. 445s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_arm64.deb ... 445s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 445s Selecting previously unselected package libxrender1:arm64. 445s Preparing to unpack .../22-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 445s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 445s Selecting previously unselected package libcairo2:arm64. 445s Preparing to unpack .../23-libcairo2_1.18.2-2_arm64.deb ... 445s Unpacking libcairo2:arm64 (1.18.2-2) ... 445s Selecting previously unselected package libcoordgen3:arm64. 445s Preparing to unpack .../24-libcoordgen3_3.0.2-1_arm64.deb ... 445s Unpacking libcoordgen3:arm64 (3.0.2-1) ... 445s Selecting previously unselected package libinchi1.07. 445s Preparing to unpack .../25-libinchi1.07_1.07.2+dfsg-1_arm64.deb ... 445s Unpacking libinchi1.07 (1.07.2+dfsg-1) ... 445s Selecting previously unselected package libjs-jquery. 445s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 445s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 446s Selecting previously unselected package libjs-underscore. 446s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 446s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 446s Selecting previously unselected package libllvm20:arm64. 446s Preparing to unpack .../28-libllvm20_1%3a20.1.0~+rc2-1~exp2ubuntu0.4_arm64.deb ... 446s Unpacking libllvm20:arm64 (1:20.1.0~+rc2-1~exp2ubuntu0.4) ... 446s Selecting previously unselected package libmaeparser1:arm64. 446s Preparing to unpack .../29-libmaeparser1_1.3.1-1build1_arm64.deb ... 446s Unpacking libmaeparser1:arm64 (1.3.1-1build1) ... 446s Selecting previously unselected package libpq5:arm64. 446s Preparing to unpack .../30-libpq5_17.4-1_arm64.deb ... 446s Unpacking libpq5:arm64 (17.4-1) ... 446s Selecting previously unselected package librdkit1t64. 446s Preparing to unpack .../31-librdkit1t64_202409.6-2_arm64.deb ... 446s Unpacking librdkit1t64 (202409.6-2) ... 447s Selecting previously unselected package librdkit-dev. 447s Preparing to unpack .../32-librdkit-dev_202409.6-2_arm64.deb ... 447s Unpacking librdkit-dev (202409.6-2) ... 447s Selecting previously unselected package libxslt1.1:arm64. 447s Preparing to unpack .../33-libxslt1.1_1.1.39-0exp1ubuntu2_arm64.deb ... 447s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 447s Selecting previously unselected package postgresql-client-17. 447s Preparing to unpack .../34-postgresql-client-17_17.4-1_arm64.deb ... 447s Unpacking postgresql-client-17 (17.4-1) ... 447s Selecting previously unselected package postgresql-17. 447s Preparing to unpack .../35-postgresql-17_17.4-1_arm64.deb ... 447s Unpacking postgresql-17 (17.4-1) ... 447s Selecting previously unselected package postgresql-17-rdkit. 447s Preparing to unpack .../36-postgresql-17-rdkit_202409.6-2_arm64.deb ... 447s Unpacking postgresql-17-rdkit (202409.6-2) ... 447s Selecting previously unselected package rdkit-data. 447s Preparing to unpack .../37-rdkit-data_202409.6-2_all.deb ... 447s Unpacking rdkit-data (202409.6-2) ... 448s Selecting previously unselected package python3-rdkit. 448s Preparing to unpack .../38-python3-rdkit_202409.6-2_arm64.deb ... 448s Unpacking python3-rdkit (202409.6-2) ... 448s Selecting previously unselected package rdkit-doc. 448s Preparing to unpack .../39-rdkit-doc_202409.6-2_all.deb ... 448s Unpacking rdkit-doc (202409.6-2) ... 449s Setting up postgresql-client-common (274) ... 449s Setting up libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 449s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 449s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 449s Setting up libio-pty-perl (1:1.20-1build3) ... 449s Setting up libxcb-render0:arm64 (1.17.0-2) ... 449s Setting up libpq5:arm64 (17.4-1) ... 449s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 449s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 449s Setting up rdkit-data (202409.6-2) ... 449s Setting up libboost-serialization1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 449s Setting up libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 449s Setting up libblas3:arm64 (3.12.1-2) ... 449s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 449s Setting up ssl-cert (1.1.3ubuntu1) ... 449s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 450s Setting up libboost-iostreams1.83.0:arm64 (1.83.0-4.1ubuntu1) ... 450s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-4) ... 450s Setting up libllvm20:arm64 (1:20.1.0~+rc2-1~exp2ubuntu0.4) ... 450s Setting up libipc-run-perl (20231003.0-2) ... 450s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 450s Setting up libjson-perl (4.10000-1) ... 450s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu2) ... 450s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 450s Setting up libcoordgen3:arm64 (3.0.2-1) ... 450s Setting up libinchi1.07 (1.07.2+dfsg-1) ... 450s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 450s Setting up postgresql-common-dev (274) ... 450s Setting up liblapack3:arm64 (3.12.1-2) ... 450s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 450s Setting up postgresql-client-17 (17.4-1) ... 450s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 450s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 450s Setting up rdkit-doc (202409.6-2) ... 450s Setting up libmaeparser1:arm64 (1.3.1-1build1) ... 450s Setting up postgresql-common (274) ... 451s Creating config file /etc/postgresql-common/createcluster.conf with new version 451s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 451s Removing obsolete dictionary files: 452s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 453s Setting up python3-numpy (1:2.2.3+ds-4) ... 454s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 454s Setting up postgresql-17 (17.4-1) ... 455s Creating new PostgreSQL cluster 17/main ... 455s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 455s The files belonging to this database system will be owned by user "postgres". 455s This user must also own the server process. 455s 455s The database cluster will be initialized with locale "C.UTF-8". 455s The default database encoding has accordingly been set to "UTF8". 455s The default text search configuration will be set to "english". 455s 455s Data page checksums are disabled. 455s 455s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 455s creating subdirectories ... ok 455s selecting dynamic shared memory implementation ... posix 455s selecting default "max_connections" ... 100 456s selecting default "shared_buffers" ... 128MB 456s selecting default time zone ... Etc/UTC 456s creating configuration files ... ok 456s running bootstrap script ... ok 456s performing post-bootstrap initialization ... ok 456s syncing data to disk ... ok 460s Setting up libcairo2:arm64 (1.18.2-2) ... 460s Setting up librdkit1t64 (202409.6-2) ... 460s Setting up postgresql-17-rdkit (202409.6-2) ... 460s Setting up python3-rdkit (202409.6-2) ... 460s Setting up librdkit-dev (202409.6-2) ... 460s Processing triggers for man-db (2.13.0-1) ... 462s Processing triggers for libc-bin (2.41-1ubuntu1) ... 495s autopkgtest [05:53:58]: test importcheck: [----------------------- 496s autopkgtest [05:53:59]: test importcheck: -----------------------] 496s autopkgtest [05:53:59]: test importcheck: - - - - - - - - - - results - - - - - - - - - - 496s importcheck PASS 496s autopkgtest [05:53:59]: @@@@@@@@@@@@@@@@@@@@ summary 496s installcheck PASS 496s importcheck PASS 514s nova [W] Using flock in prodstack6-arm64 514s Creating nova instance adt-plucky-arm64-rdkit-20250313-054543-juju-7f2275-prod-proposed-migration-environment-15-d469a3e4-2852-4a97-8a54-3cd181114fe1 from image adt/ubuntu-plucky-arm64-server-20250313.img (UUID 1e0d5b46-827c-482e-8813-f0c13efee277)... 514s nova [W] Timed out waiting for 9b32a897-e1d0-4212-9083-2117e3a761e0 to get deleted. 514s nova [W] Using flock in prodstack6-arm64 514s flock: timeout while waiting to get lock 514s Creating nova instance adt-plucky-arm64-rdkit-20250313-054543-juju-7f2275-prod-proposed-migration-environment-15-d469a3e4-2852-4a97-8a54-3cd181114fe1 from image adt/ubuntu-plucky-arm64-server-20250313.img (UUID 1e0d5b46-827c-482e-8813-f0c13efee277)... 514s nova [W] Timed out waiting for b99c0385-5917-4f5c-94e7-ec1122133b58 to get deleted.