0s autopkgtest [15:57:55]: starting date and time: 2025-03-15 15:57:55+0000 0s autopkgtest [15:57:55]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:57:55]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.33b5hu8s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.univar --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-38.secgroup --name adt-plucky-arm64-r-cran-spatstat.univar-20250315-155755-juju-7f2275-prod-proposed-migration-environment-15-7db8a365-2bbb-4f1a-ba97-5896881f7390 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 172s autopkgtest [16:00:47]: testbed dpkg architecture: arm64 172s autopkgtest [16:00:47]: testbed apt version: 2.9.33 173s autopkgtest [16:00:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 173s autopkgtest [16:00:48]: testbed release detected to be: None 174s autopkgtest [16:00:49]: updating testbed package index (apt update) 174s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 175s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 175s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 175s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 175s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 175s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 176s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 176s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 176s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 176s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 176s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 176s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 176s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 176s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 177s Fetched 1078 kB in 2s (549 kB/s) 177s Reading package lists... 178s + lsb_release --codename --short 178s + RELEASE=plucky 178s + cat 178s + [ plucky != trusty ] 178s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Calculating upgrade... 180s Calculating upgrade... 180s The following packages will be upgraded: 180s pinentry-curses python3-jinja2 strace 180s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 647 kB of archives. 180s After this operation, 11.3 kB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 181s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 181s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 181s Fetched 647 kB in 1s (488 kB/s) 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 182s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 182s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 182s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 182s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 182s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 182s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 182s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 182s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 182s Setting up strace (6.13+ds-1ubuntu1) ... 182s Processing triggers for man-db (2.13.0-1) ... 183s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 183s + /usr/lib/apt/apt-helper analyze-pattern ?true 183s + uname -r 183s + sed s/\./\\./g 183s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 183s + apt list ?obsolete 183s + tail -n+2 183s + + grep -v ^linux-.*6\.14\.0-10-generic.* 183s cut -d/ -f1 183s + obsolete_pkgs=linux-headers-6.11.0-8-generic 183s linux-headers-6.11.0-8 183s linux-image-6.11.0-8-generic 183s linux-modules-6.11.0-8-generic 183s linux-tools-6.11.0-8-generic 183s linux-tools-6.11.0-8 183s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 183s Reading package lists... 184s Building dependency tree... 184s Reading state information... 184s Solving dependencies... 184s The following packages will be REMOVED: 184s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 184s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 184s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 184s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 185s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 185s After this operation, 267 MB disk space will be freed. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 185s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 185s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 185s Removing libpython3.12t64:arm64 (3.12.9-1) ... 185s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 185s Removing libnsl2:arm64 (1.3.0-3build3) ... 185s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 185s Removing libunwind8:arm64 (1.6.2-3.1) ... 185s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 185s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 187s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 187s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 187s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 187s /etc/kernel/postrm.d/initramfs-tools: 187s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 187s /etc/kernel/postrm.d/zz-flash-kernel: 187s flash-kernel: Kernel 6.11.0-8-generic has been removed. 187s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 188s /etc/kernel/postrm.d/zz-update-grub: 188s Sourcing file `/etc/default/grub' 188s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 188s Generating grub configuration file ... 188s Found linux image: /boot/vmlinuz-6.14.0-10-generic 188s Found initrd image: /boot/initrd.img-6.14.0-10-generic 188s Warning: os-prober will not be executed to detect other bootable partitions. 188s Systems on them will not be added to the GRUB boot configuration. 188s Check GRUB_DISABLE_OS_PROBER documentation entry. 188s Adding boot menu entry for UEFI Firmware Settings ... 188s done 188s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 188s Processing triggers for libc-bin (2.41-1ubuntu1) ... 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 189s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 189s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 189s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 189s + grep -q trusty /etc/lsb-release 189s + [ ! -d /usr/share/doc/unattended-upgrades ] 189s + [ ! -d /usr/share/doc/lxd ] 189s + [ ! -d /usr/share/doc/lxd-client ] 189s + [ ! -d /usr/share/doc/snapd ] 189s + type iptables 189s + cat 189s + chmod 755 /etc/rc.local 189s + . /etc/rc.local 189s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 189s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 189s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 189s + uname -m 189s + [ aarch64 = ppc64le ] 189s + [ -d /run/systemd/system ] 189s + systemd-detect-virt --quiet --vm 189s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 189s + cat 189s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 189s + echo COMPRESS=lz4 189s autopkgtest [16:01:04]: upgrading testbed (apt dist-upgrade and autopurge) 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 190s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 190s Starting 2 pkgProblemResolver with broken count: 0 190s Done 191s Entering ResolveByKeep 191s 191s Calculating upgrade... 192s The following packages will be upgraded: 192s libc-bin libc-dev-bin libc6 libc6-dev locales 192s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 192s Need to get 9530 kB of archives. 192s After this operation, 0 B of additional disk space will be used. 192s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 196s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 204s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 214s Preconfiguring packages ... 214s Fetched 9530 kB in 22s (431 kB/s) 214s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 214s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 214s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up libc6:arm64 (2.41-1ubuntu2) ... 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 215s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up libc-bin (2.41-1ubuntu2) ... 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 215s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 215s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up locales (2.41-1ubuntu2) ... 216s Generating locales (this might take a while)... 218s en_US.UTF-8... done 218s Generation complete. 218s Setting up libc-dev-bin (2.41-1ubuntu2) ... 218s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 218s Processing triggers for man-db (2.13.0-1) ... 219s Processing triggers for systemd (257.3-1ubuntu3) ... 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 221s Starting pkgProblemResolver with broken count: 0 221s Starting 2 pkgProblemResolver with broken count: 0 221s Done 221s Solving dependencies... 222s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 222s autopkgtest [16:01:37]: rebooting testbed after setup commands that affected boot 246s autopkgtest [16:02:01]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 249s autopkgtest [16:02:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.univar 252s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (dsc) [2194 B] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (tar) [67.9 kB] 252s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (diff) [3172 B] 252s gpgv: Signature made Sat Feb 22 20:26:45 2025 UTC 252s gpgv: using RSA key 5C7ABEA20F8630459CC8C8B5E27F2CF8458C2FA4 252s gpgv: Can't check signature: No public key 252s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.univar_3.1-1-1build1.dsc: no acceptable signature found 252s autopkgtest [16:02:07]: testing package r-cran-spatstat.univar version 3.1-1-1build1 253s autopkgtest [16:02:08]: build not needed 262s autopkgtest [16:02:17]: test run-unit-test: preparing testbed 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 263s Starting pkgProblemResolver with broken count: 0 263s Starting 2 pkgProblemResolver with broken count: 0 263s Done 264s The following NEW packages will be installed: 264s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 264s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 264s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 264s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 264s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 264s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 264s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-spatstat.univar 264s r-cran-spatstat.utils unzip x11-common xdg-utils zip 264s 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. 264s Need to get 39.0 MB of archives. 264s After this operation, 80.3 MB of additional disk space will be used. 264s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 265s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 266s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 266s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 266s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 267s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 267s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 267s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 267s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 267s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 267s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 268s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 268s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 268s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 268s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 269s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 269s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 269s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 269s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 269s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 269s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 269s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 272s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 272s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 272s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 272s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 273s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 273s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 273s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 273s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 273s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 273s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 273s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 274s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 274s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 274s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 274s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 274s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 274s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 275s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 275s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 276s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 276s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 276s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 308s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.utils arm64 3.1-2-1 [381 kB] 309s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.univar arm64 3.1-1-1build1 [308 kB] 310s Preconfiguring packages ... 310s Fetched 39.0 MB in 45s (861 kB/s) 310s Selecting previously unselected package fonts-dejavu-mono. 310s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 310s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-mono (2.37-8) ... 310s Selecting previously unselected package fonts-dejavu-core. 310s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-core (2.37-8) ... 310s Selecting previously unselected package fontconfig-config. 310s Preparing to unpack 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317s Processing triggers for install-info (7.1.1-1) ... 317s Processing triggers for libc-bin (2.41-1ubuntu2) ... 318s autopkgtest [16:03:13]: test run-unit-test: [----------------------- 318s BEGIN TEST all.R 318s 318s R version 4.4.3 (2025-02-28) -- "Trophy Case" 318s Copyright (C) 2025 The R Foundation for Statistical Computing 318s Platform: aarch64-unknown-linux-gnu 318s 318s R is free software and comes with ABSOLUTELY NO WARRANTY. 318s You are welcome to redistribute it under certain conditions. 318s Type 'license()' or 'licence()' for distribution details. 318s 318s R is a collaborative project with many contributors. 318s Type 'contributors()' for more information and 318s 'citation()' on how to cite R or R packages in publications. 318s 318s Type 'demo()' for some demos, 'help()' for on-line help, or 318s 'help.start()' for an HTML browser interface to help. 318s Type 'q()' to quit R. 318s 319s > #' 319s > #' Header for all (concatenated) test files 319s > #' 319s > #' Require spatstat.univar 319s > #' Obtain environment variable controlling tests. 319s > #' 319s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 319s > 319s > require(spatstat.univar) 319s Loading required package: spatstat.univar 319s spatstat.univar 3.1-1 319s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 319s > ALWAYS <- TRUE 319s > cat(paste("--------- Executing", 319s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 319s + "test code -----------\n")) 319s --------- Executing **RESTRICTED** subset of test code ----------- 319s > # tests/weightedstats.R 319s > # $Revision: 1.2 $ $Date: 2023/11/05 01:40:53 $ 319s > 319s > local({ 319s + if(ALWAYS) { # depends on hardware 319s + ## whist() 319s + ## check agreement between C and interpreted code for whist() 319s + set.seed(98123) 319s + x <- runif(1000) 319s + w <- sample(1:5, 1000, replace=TRUE) 319s + b <- seq(0,1,length=101) 319s + aC <- whist(x,b,w, method="C") 319s + aR <- whist(x,b,w, method="interpreted") 319s + if(!all(aC == aR)) 319s + stop("Algorithms for whist disagree") 319s + } 319s + if(FULLTEST) { 319s + ## cases of 'unnormdensity()' 319s + x <- rnorm(20) 319s + d0 <- unnormdensity(x, weights=rep(0, 20)) 319s + dneg <- unnormdensity(x, weights=c(-runif(19), 0)) 319s + } 319s + 319s + }) 319s > 319s > #' 319s > #' tests/parzen.R 319s > #' 319s > #' Tests of the Parzen-Rosenblatt estimator 319s > #' (fixed bandwidth, no boundary correction) 319s > #' 319s > #' $Revision: 1.1 $ $Date: 2023/10/22 02:39:49 $ 319s > 319s > local({ 319s + if(FULLTEST) { 319s + #' code in kernels.R 319s + kernames <- c("gaussian", "rectangular", "triangular", 319s + "epanechnikov", "biweight", "cosine", "optcosine") 319s + X <- rnorm(20) 319s + U <- runif(20) 319s + for(ker in kernames) { 319s + dX <- dkernel(X, ker) 319s + fX <- pkernel(X, ker) 319s + qU <- qkernel(U, ker) 319s + m0 <- kernel.moment(0, 0, ker) 319s + m1 <- kernel.moment(1, 0, ker) 319s + m2 <- kernel.moment(2, 0, ker) 319s + m3 <- kernel.moment(3, 0, ker) 319s + fa <- kernel.factor(ker) 319s + sq <- kernel.squint(ker) 319s + } 319s + } 319s + }) 319s > 319s > local({ 319s + if(ALWAYS) { 319s + ## unnormdensity 319s + x <- rnorm(20) 319s + d0 <- unnormdensity(x, weights=rep(0, 20)) 319s + dneg <- unnormdensity(x, weights=c(-runif(19), 0)) 319s + } 319s + }) 319s > # 319s > # tests/NAinCov.R 319s > # 319s > # Testing the response to the presence of NA's in covariates 319s > # 319s > # $Revision: 1.10 $ $Date: 2024/09/30 23:13:54 $ 319s > 319s > if(FULLTEST) { 319s + local({ 319s + #' quantile.ewcdf 319s + f <- ewcdf(runif(100), runif(100)) 319s + qf <- quantile(f, probs=c(0.1, NA, 0.8)) 319s + #' quantile.density 319s + f <- density(runif(100)) 319s + qf <- quantile(f, probs=c(0.1, NA, 0.8)) 319s + }) 319s + } 319s > 319s > #' tests/direct.R 319s > #' 319s > #' Check output of densityBC() by comparing with 319s > #' kernel estimates computed directly in R code. 319s > #' 319s > #' $Revision: 1.2 $ $Date: 2023/10/22 02:39:35 $ 319s > 319s > INTERACTIVE <- FALSE 319s > 319s > #' ...... direct implementation ........................ 319s > #' 319s > #' Biweight boundary kernel (for estimation at point r) 319s > 319s > bdry.bwt <- function(x,r,h=1){ 319s + u <- x/h 319s + k <- (15/(16*h))*(1-u^2)^2*(u^2<1) 319s + p <- r/h 319s + p[p>1] <- 1 319s + a0 <- (3*p^5 - 10*p^3 + 15*p + 8)/16 319s + a1 <- (5*p^6 - 15*p^4 + 15*p^2 -5)/32 319s + a2 <- (15*p^7 - 42*p^5 + 35*p^3 + 8)/112 319s + bk <- (a2-a1*u)*k*(u 319s > #' Standard biweight kernel 319s > 319s > bwt <- function(x,r,h=1){ 319s + # r is ignored 319s + u <- x/h 319s + k <- (15/(16*h))*(1-u^2)^2*(u^2<1) 319s + k 319s + } 319s > 319s > #' Kernel estimate 319s > 319s > kernR <- function(x, h, kname="bwt", from, to, nr=200) { 319s + ker <- get(kname, mode="function") 319s + fhat <- numeric(0) 319s + rvalues <- seq(from, to, length=nr) 319s + for (r in rvalues) 319s + fhat <- c(fhat,mean(ker(r-x, r, h=h))) 319s + return(list(x=rvalues, y=fhat)) 319s + } 319s > 319s > #' ...................... RUN EXAMPLE ....................... 319s > 319s > sim.dat <- rexp(500) 319s > 319s > from <- 0.01 319s > to <- 5 319s > nr <- 200 319s > 319s > if(INTERACTIVE) opa <- par(ask=TRUE) 319s > 319s > cat("--- Fixed bandwidth ---\n") 319s --- Fixed bandwidth --- 319s > 319s > fhatR <- kernR(sim.dat, 0.4, "bwt", from=from, to=to, nr=nr) 319s > fhatC <- densityBC(sim.dat, "biweight", h=0.4, from=from, to=to, n=nr) 319s > 319s > stopifnot(length(fhatR$x) == length(fhatC$x)) 319s > stopifnot(all(fhatR$x == fhatC$x)) 319s > rvalues <- fhatR$x 319s > ftrue <- dexp(rvalues) 319s > 319s > if(INTERACTIVE) { 319s + plot(c(from, to), c(0, 1.1), type="n", xlab="r", ylab="density", 319s + main="Fixed bandwidth") 319s + lines(rvalues, fhatR$y, col=1) 319s + lines(rvalues, fhatC$x, col=2) 319s + lines(rvalues, ftrue, col=3) 319s + } 319s > 319s > cat("Range of absolute discrepancies between estimates (fixed bandwidth):\n") 319s Range of absolute discrepancies between estimates (fixed bandwidth): 319s > print(range(fhatC$y - fhatR$y)) 319s [1] -5.551115e-16 6.661338e-16 319s > 319s > cat("\n--- Boundary kernel ---\n") 319s 319s --- Boundary kernel --- 319s > 319s > fhat.R <- kernR(sim.dat, 0.4, "bdry.bwt", from=from, to=to, nr=nr) 319s > fhat.C <- densityBC(sim.dat, "biweight", h=0.4, from=from, to=to, n=nr, 319s + zerocor="bdrykern") 319s > 319s > stopifnot(length(fhat.R$x) == length(fhat.C$x)) 319s > stopifnot(all(fhat.R$x == fhat.C$x)) 319s > 319s > rvalues <- fhat.R$x 319s > ftrue <- dexp(rvalues) 319s > 319s > if(INTERACTIVE) { 319s + plot(c(from, to), c(0, 1.1), type="n", xlab="r", ylab="density", 319s + main="Boundary kernel") 319s + lines(rvalues, fhat.R$y, col=1) 319s + lines(rvalues, fhat.C$y, col=2) 319s + lines(rvalues, ftrue, col=3) 319s + } 319s > 319s > cat("Range of absolute discrepancies between estimates (boundary kernel):\n") 319s Range of absolute discrepancies between estimates (boundary kernel): 319s > print(range(fhat.C$y - fhat.R$y)) 319s [1] -7.771561e-16 4.440892e-16 319s > 319s > rel.discrep <- (fhat.C$y - fhat.R$y)/ftrue 319s > rel.discrep <- rel.discrep[ftrue > 0.1] 319s > cat("Range of relative discrepancies between estimates (boundary kernel):\n") 319s Range of relative discrepancies between estimates (boundary kernel): 319s > print(range(rel.discrep)) 319s [1] -1.008677e-15 7.985193e-16 319s > if(max(abs(rel.discrep)) > 0.01) 319s + stop("Relative discrepancies between C and R code exceed 1 percent") 319s > 319s > if(INTERACTIVE) par(opa) 319s > 319s > #' tests/kermom.R 319s > #' 319s > #' Check R function kernel.moment() against C function kermom () 319s > #' 319s > #' $Revision: 1.2 $ $Date: 2024/10/31 10:36:27 $ 319s > #' 319s > 319s > moo <- 1 319s > sdee <- 0.5 319s > xx <- seq(moo - 4 * sdee, moo + 4 * sdee, length=512) 319s > 319s > kernames <- c("gaussian", "rectangular", "triangular", 319s + "epanechnikov", "biweight", "cosine", "optcosine") 319s > 319s > eps <- sqrt(.Machine$double.eps) 319s > 319s > for(m in 0:2) { 319s + cat("Incomplete moment of order", m, fill=TRUE) 319s + for(ker in kernames) { 319s + Rvalues <- kernel.moment(m, xx, ker, mean=moo, sd=sdee) 319s + Cvalues <- kermom(m, xx, ker, mean=moo, sd=sdee) 319s + discrep <- max(abs(Rvalues-Cvalues)) 319s + if(discrep > eps) 319s + stop(paste("kernel.moment and kermom disagree", 319s + "for m =", m, "for kernel", sQuote(ker), 319s + "\n\tDiscrepancy", discrep)) 319s + cat("Kernel", sQuote(ker), "\tdiscrepancy", discrep, fill=TRUE) 319s + } 319s + } 319s Incomplete moment of order 0 319s Kernel ‘gaussian’ discrepancy 0 319s Kernel ‘rectangular’ discrepancy 0 319s Kernel ‘triangular’ discrepancy 2.220446e-16 319s Kernel ‘epanechnikov’ discrepancy 2.220446e-16 319s Kernel ‘biweight’ discrepancy 2.220446e-16 319s Kernel ‘cosine’ discrepancy 0 319s Kernel ‘optcosine’ discrepancy 0 319s Incomplete moment of order 1 319s Kernel ‘gaussian’ discrepancy 0 319s Kernel ‘rectangular’ discrepancy 1.110223e-16 319s Kernel ‘triangular’ discrepancy 3.330669e-16 319s Kernel ‘epanechnikov’ discrepancy 2.220446e-16 319s Kernel ‘biweight’ discrepancy 3.330669e-16 319s Kernel ‘cosine’ discrepancy 1.110223e-16 319s Kernel ‘optcosine’ discrepancy 1.110223e-16 319s Incomplete moment of order 2 319s Kernel ‘gaussian’ discrepancy 2.220446e-16 319s Kernel ‘rectangular’ discrepancy 2.220446e-16 319s Kernel ‘triangular’ discrepancy 4.440892e-16 319s Kernel ‘epanechnikov’ discrepancy 4.440892e-16 319s Kernel ‘biweight’ discrepancy 4.440892e-16 319s Kernel ‘cosine’ discrepancy 2.220446e-16 319s Kernel ‘optcosine’ discrepancy 2.94903e-16 319s > 319s autopkgtest [16:03:14]: test run-unit-test: -----------------------] 320s autopkgtest [16:03:15]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 320s run-unit-test PASS 320s autopkgtest [16:03:15]: test pkg-r-autopkgtest: preparing testbed 320s Reading package lists... 321s Building dependency tree... 321s Reading state information... 321s Starting pkgProblemResolver with broken count: 0 321s Starting 2 pkgProblemResolver with broken count: 0 321s Done 322s The following NEW packages will be installed: 322s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 322s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 322s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 322s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 322s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 322s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 322s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 322s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 322s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 322s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 322s zlib1g-dev 322s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 322s Need to get 92.7 MB of archives. 322s After this operation, 334 MB of additional disk space will be used. 322s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 323s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 323s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 342s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 342s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 342s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 342s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 342s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 342s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 347s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 349s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 354s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 356s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 360s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 364s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 402s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 403s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 403s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 404s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 408s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 430s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 430s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 430s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 430s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 430s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 430s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 431s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 452s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 452s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 452s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 452s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 453s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 453s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 453s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 453s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 475s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 475s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 475s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 475s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 483s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 484s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 484s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 485s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 485s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 486s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 486s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 488s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 488s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 489s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 489s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 489s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 489s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 490s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 490s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 491s Fetched 92.7 MB in 2min 48s (552 kB/s) 491s Selecting previously unselected package libisl23:arm64. 491s (Reading database 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83891 files and directories currently installed.) 491s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 491s Unpacking libisl23:arm64 (0.27-1) ... 491s Selecting previously unselected package libmpc3:arm64. 491s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 491s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 491s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 491s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 491s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 491s Selecting previously unselected package cpp-14. 491s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 491s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 491s Selecting previously unselected package cpp-aarch64-linux-gnu. 491s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 491s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 491s Selecting previously unselected package cpp. 491s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 491s Unpacking cpp (4:14.2.0-1ubuntu1) ... 491s Selecting previously unselected package libcc1-0:arm64. 491s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 491s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 491s Selecting previously unselected package libitm1:arm64. 491s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb 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libhwasan0:arm64 (15-20250222-0ubuntu1) ... 492s Selecting previously unselected package libgcc-14-dev:arm64. 492s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 492s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 492s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 492s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 492s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 492s Selecting previously unselected package gcc-14. 492s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 492s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 492s Selecting previously unselected package gcc-aarch64-linux-gnu. 492s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 492s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 492s Selecting previously unselected package gcc. 492s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 492s Unpacking gcc 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... 493s Selecting previously unselected package build-essential. 493s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 493s Unpacking build-essential (12.10ubuntu1) ... 493s Selecting previously unselected package dctrl-tools. 493s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 493s Unpacking dctrl-tools (2.24-3build3) ... 493s Selecting previously unselected package libgfortran-14-dev:arm64. 493s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 493s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 493s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 493s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 493s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 494s Selecting previously unselected package gfortran-14. 494s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 494s Unpacking gfortran-14 (14.2.0-17ubuntu3) 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libdeflate-dev:arm64. 494s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 494s Unpacking libdeflate-dev:arm64 (1.23-1) ... 494s Selecting previously unselected package libicu-dev:arm64. 494s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 494s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 495s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 495s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 495s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 495s Selecting previously unselected package libjpeg8-dev:arm64. 495s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 495s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 495s Selecting previously unselected package libjpeg-dev:arm64. 495s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 495s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 495s Selecting previously unselected package liblapack-dev:arm64. 495s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 495s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 495s Selecting previously unselected package libncurses-dev:arm64. 495s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 495s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 495s Selecting previously unselected package libpcre2-16-0:arm64. 495s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 495s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 495s Selecting previously unselected package libpcre2-32-0:arm64. 495s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 495s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 495s Selecting previously unselected package libpcre2-posix3:arm64. 495s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 495s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 495s Selecting previously unselected package libpcre2-dev:arm64. 495s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 495s 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libcc1-0:arm64 (15-20250222-0ubuntu1) ... 496s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 496s Setting up libblas-dev:arm64 (3.12.1-2) ... 496s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 496s Setting up dctrl-tools (2.24-3build3) ... 496s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 496s Setting up libbz2-dev:arm64 (1.0.8-6) ... 496s Setting up libpcre2-dev:arm64 (10.45-1) ... 496s Setting up libpng-dev:arm64 (1.6.47-1) ... 496s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 496s Setting up pkgconf:arm64 (1.8.1-4) ... 496s Setting up liblapack-dev:arm64 (3.12.1-2) ... 496s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 496s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 496s Setting up libgcc-14-dev:arm64 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auto mode 496s Setting up build-essential (12.10ubuntu1) ... 496s Setting up gfortran (4:14.2.0-1ubuntu1) ... 496s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 496s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 496s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 496s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 496s Setting up r-base-dev (4.4.3-1) ... 496s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 496s Processing triggers for libc-bin (2.41-1ubuntu2) ... 496s Processing triggers for man-db (2.13.0-1) ... 497s Processing triggers for install-info (7.1.1-1) ... 500s autopkgtest [16:06:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 500s autopkgtest [16:06:15]: test pkg-r-autopkgtest: [----------------------- 500s Test: Try to load the R library spatstat.univar 500s 500s R version 4.4.3 (2025-02-28) -- "Trophy Case" 500s Copyright (C) 2025 The R Foundation for Statistical Computing 500s Platform: aarch64-unknown-linux-gnu 500s 500s R is free software and comes with ABSOLUTELY NO WARRANTY. 500s You are welcome to redistribute it under certain conditions. 500s Type 'license()' or 'licence()' for distribution details. 500s 500s R is a collaborative project with many contributors. 500s Type 'contributors()' for more information and 500s 'citation()' on how to cite R or R packages in publications. 500s 500s Type 'demo()' for some demos, 'help()' for on-line help, or 500s 'help.start()' for an HTML browser interface to help. 500s Type 'q()' to quit R. 500s 501s > library('spatstat.univar') 501s spatstat.univar 3.1-1 501s > 501s > 501s Other tests are currently unsupported! 501s They will be progressively added. 501s autopkgtest [16:06:16]: test pkg-r-autopkgtest: -----------------------] 501s autopkgtest [16:06:16]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 501s pkg-r-autopkgtest PASS 502s autopkgtest [16:06:17]: @@@@@@@@@@@@@@@@@@@@ summary 502s run-unit-test PASS 502s pkg-r-autopkgtest PASS 524s nova [W] Using flock in prodstack6-arm64 524s flock: timeout while waiting to get lock 524s Creating nova instance adt-plucky-arm64-r-cran-spatstat.univar-20250315-155755-juju-7f2275-prod-proposed-migration-environment-15-7db8a365-2bbb-4f1a-ba97-5896881f7390 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 524s nova [W] Timed out waiting for 38cc8c27-54bb-486f-8034-c1d25d699cc9 to get deleted.