0s autopkgtest [15:57:45]: starting date and time: 2025-03-15 15:57:45+0000 0s autopkgtest [15:57:45]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:57:45]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p7v7emia/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.linnet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-34.secgroup --name adt-plucky-arm64-r-cran-spatstat.linnet-20250315-155744-juju-7f2275-prod-proposed-migration-environment-15-a27a0f9d-2d30-4dbb-b132-c3dc77ccec32 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 181s autopkgtest [16:00:46]: testbed dpkg architecture: arm64 182s autopkgtest [16:00:47]: testbed apt version: 2.9.33 182s autopkgtest [16:00:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 182s autopkgtest [16:00:47]: testbed release detected to be: None 183s autopkgtest [16:00:48]: updating testbed package index (apt update) 184s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 184s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 184s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 184s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 184s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 185s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 185s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 185s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 185s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 185s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 185s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 185s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 185s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 185s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 185s Fetched 1078 kB in 2s (627 kB/s) 187s Reading package lists... 187s + lsb_release --codename --short 187s + RELEASE=plucky 187s + cat 187s + [ plucky != trusty ] 187s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 187s Reading package lists... 188s Building dependency tree... 188s Reading state information... 190s Calculating upgrade... 190s Calculating upgrade... 190s The following packages will be upgraded: 190s pinentry-curses python3-jinja2 strace 190s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s Need to get 647 kB of archives. 190s After this operation, 11.3 kB of additional disk space will be used. 190s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 191s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 191s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 192s Fetched 647 kB in 1s (594 kB/s) 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 192s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 192s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 192s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 192s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 192s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 193s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 193s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 193s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 193s Setting up strace (6.13+ds-1ubuntu1) ... 193s Processing triggers for man-db (2.13.0-1) ... 194s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 194s + /usr/lib/apt/apt-helper analyze-pattern ?true 194s + uname -r 194s + sed s/\./\\./g 194s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 194s + apt list ?obsolete 194s + tail -n+2 194s + cut -d/ -f1 194s + grep -v ^linux-.*6\.14\.0-10-generic.* 194s + obsolete_pkgs=linux-headers-6.11.0-8-generic 194s linux-headers-6.11.0-8 194s linux-image-6.11.0-8-generic 194s linux-modules-6.11.0-8-generic 194s linux-tools-6.11.0-8-generic 194s linux-tools-6.11.0-8 194s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8Reading package lists... 194s Building dependency tree... linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 195s 195s Reading state information... 195s Solving dependencies... 195s The following packages will be REMOVED: 195s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 195s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 195s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 195s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 196s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 196s After this operation, 267 MB disk space will be freed. 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 196s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 196s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 196s Removing libpython3.12t64:arm64 (3.12.9-1) ... 196s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 196s Removing libnsl2:arm64 (1.3.0-3build3) ... 196s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 196s Removing libunwind8:arm64 (1.6.2-3.1) ... 196s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 197s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 199s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 199s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 199s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 199s /etc/kernel/postrm.d/initramfs-tools: 199s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 199s /etc/kernel/postrm.d/zz-flash-kernel: 199s flash-kernel: Kernel 6.11.0-8-generic has been removed. 199s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 199s /etc/kernel/postrm.d/zz-update-grub: 199s Sourcing file `/etc/default/grub' 199s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 199s Generating grub configuration file ... 200s Found linux image: /boot/vmlinuz-6.14.0-10-generic 200s Found initrd image: /boot/initrd.img-6.14.0-10-generic 200s Warning: os-prober will not be executed to detect other bootable partitions. 200s Systems on them will not be added to the GRUB boot configuration. 200s Check GRUB_DISABLE_OS_PROBER documentation entry. 200s Adding boot menu entry for UEFI Firmware Settings ... 200s done 200s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 201s Processing triggers for libc-bin (2.41-1ubuntu1) ... 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 201s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 201s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 201s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 201s + grep -q trusty /etc/lsb-release 201s + [ ! -d /usr/share/doc/unattended-upgrades ] 201s + [ ! -d /usr/share/doc/lxd ] 201s + [ ! -d /usr/share/doc/lxd-client ] 201s + [ ! -d /usr/share/doc/snapd ] 201s + type iptables 201s + cat 201s + chmod 755 /etc/rc.local 201s + . /etc/rc.local 201s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 201s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 201s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 201s + uname -m 201s + [ aarch64 = ppc64le ] 201s + [ -d /run/systemd/system ] 201s + systemd-detect-virt --quiet --vm 201s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 201s + cat 201s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 201s + echo COMPRESS=lz4 201s autopkgtest [16:01:06]: upgrading testbed (apt dist-upgrade and autopurge) 201s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 203s Entering ResolveByKeep 203s 204s Calculating upgrade... 204s The following packages will be upgraded: 204s libc-bin libc-dev-bin libc6 libc6-dev locales 204s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Need to get 9530 kB of archives. 204s After this operation, 0 B of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 207s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 207s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 210s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 211s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 217s Preconfiguring packages ... 217s Fetched 9530 kB in 12s (783 kB/s) 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 217s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 217s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 217s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 217s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 217s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 217s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 217s Setting up libc6:arm64 (2.41-1ubuntu2) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 218s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 218s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 218s Setting up libc-bin (2.41-1ubuntu2) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 218s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 218s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 218s Setting up locales (2.41-1ubuntu2) ... 219s Generating locales (this might take a while)... 221s en_US.UTF-8... done 221s Generation complete. 221s Setting up libc-dev-bin (2.41-1ubuntu2) ... 221s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 221s Processing triggers for man-db (2.13.0-1) ... 222s Processing triggers for systemd (257.3-1ubuntu3) ... 223s Reading package lists... 223s Building dependency tree... 223s Reading state information... 224s Starting pkgProblemResolver with broken count: 0 224s Starting 2 pkgProblemResolver with broken count: 0 224s Done 224s Solving dependencies... 225s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 225s autopkgtest [16:01:30]: rebooting testbed after setup commands that affected boot 249s autopkgtest [16:01:54]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 254s autopkgtest [16:01:59]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.linnet 257s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (dsc) [2484 B] 257s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (tar) [285 kB] 257s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (diff) [3576 B] 258s gpgv: Signature made Tue Feb 25 02:15:15 2025 UTC 258s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 258s gpgv: issuer "plessy@debian.org" 258s gpgv: Can't check signature: No public key 258s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.linnet_3.2-5-1.dsc: no acceptable signature found 258s autopkgtest [16:02:03]: testing package r-cran-spatstat.linnet version 3.2-5-1 259s autopkgtest [16:02:04]: build not needed 268s autopkgtest [16:02:13]: test run-unit-test: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 269s Starting pkgProblemResolver with broken count: 0 269s Starting 2 pkgProblemResolver with broken count: 0 269s Done 270s The following NEW packages will be installed: 270s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 270s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 270s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 270s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 270s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 270s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 270s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-abind r-cran-deldir 270s r-cran-goftest r-cran-lattice r-cran-locfit r-cran-matrix r-cran-mgcv 270s r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat 270s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 270s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 270s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 270s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip 270s 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. 270s Need to get 81.6 MB of archives. 270s After this operation, 134 MB of additional disk space will be used. 270s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 270s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 271s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 271s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 271s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 272s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 272s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 272s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 272s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 272s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 272s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 273s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 273s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 273s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 273s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 273s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 274s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 274s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 274s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 274s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 274s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 274s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 277s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 277s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 277s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 277s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 278s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 278s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 278s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 278s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 278s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 278s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 278s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 279s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 279s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 279s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 280s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 280s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 280s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 280s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 281s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 281s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 281s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 281s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 313s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 313s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 314s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 314s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 315s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 316s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 321s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 323s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 327s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-polyclip arm64 1.10-7-1 [113 kB] 327s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 337s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rpart arm64 4.1.24-1 [665 kB] 338s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.utils arm64 3.1-2-1 [381 kB] 339s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 343s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.univar arm64 3.1-1-1build1 [308 kB] 344s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.geom arm64 3.3-5-1 [3929 kB] 349s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.random arm64 3.3-2-1 [1159 kB] 350s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 350s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.sparse arm64 3.1-0-1 [218 kB] 350s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.explore arm64 3.3-4-1 [3272 kB] 354s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.model arm64 3.3-4-1 [3398 kB] 358s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.linnet arm64 3.2-5-1 [1507 kB] 360s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat arm64 3.3-1-1 [4120 kB] 366s Preconfiguring packages ... 366s Fetched 81.6 MB in 1min 36s (854 kB/s) 366s Selecting previously unselected package fonts-dejavu-mono. 366s (Reading database ... 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libgfortran5:arm64. 367s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 367s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 367s Selecting previously unselected package libgomp1:arm64. 367s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 367s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 367s Selecting previously unselected package libgraphite2-3:arm64. 367s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 367s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 367s Selecting previously unselected package libharfbuzz0b:arm64. 367s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_arm64.deb ... 367s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 367s Selecting previously unselected package x11-common. 367s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ... 367s Unpacking x11-common (1:7.7+23ubuntu3) ... 367s Selecting previously unselected package libice6:arm64. 367s Preparing to unpack .../18-libice6_2%3a1.1.1-1_arm64.deb ... 367s Unpacking libice6:arm64 (2:1.1.1-1) ... 367s Selecting previously unselected package libjpeg-turbo8:arm64. 367s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 367s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 367s Selecting previously unselected package libjpeg8:arm64. 367s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 367s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 367s Selecting previously unselected package liblapack3:arm64. 367s Preparing to unpack .../21-liblapack3_3.12.1-2_arm64.deb ... 367s Unpacking liblapack3:arm64 (3.12.1-2) ... 367s Selecting previously unselected package liblerc4:arm64. 367s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 367s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 367s Selecting previously unselected package libthai-data. 367s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 367s Unpacking libthai-data 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unselected package zip. 368s Preparing to unpack .../40-zip_3.0-14ubuntu2_arm64.deb ... 368s Unpacking zip (3.0-14ubuntu2) ... 368s Selecting previously unselected package unzip. 368s Preparing to unpack .../41-unzip_6.0-28ubuntu6_arm64.deb ... 368s Unpacking unzip (6.0-28ubuntu6) ... 368s Selecting previously unselected package xdg-utils. 368s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ... 368s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 368s Selecting previously unselected package r-base-core. 368s Preparing to unpack .../43-r-base-core_4.4.3-1_arm64.deb ... 368s Unpacking r-base-core (4.4.3-1) ... 368s Selecting previously unselected package r-cran-abind. 368s Preparing to unpack .../44-r-cran-abind_1.4-8-1_all.deb ... 368s Unpacking r-cran-abind (1.4-8-1) ... 368s Selecting previously unselected package r-cran-deldir. 368s Preparing to unpack .../45-r-cran-deldir_2.0-4-1build1_arm64.deb ... 368s Unpacking r-cran-deldir (2.0-4-1build1) ... 368s Selecting previously unselected package r-cran-goftest. 368s Preparing to unpack .../46-r-cran-goftest_1.2-3-1_arm64.deb ... 368s Unpacking r-cran-goftest (1.2-3-1) ... 368s Selecting previously unselected package r-cran-lattice. 368s Preparing to unpack .../47-r-cran-lattice_0.22-6-1_arm64.deb ... 368s Unpacking r-cran-lattice (0.22-6-1) ... 368s Selecting previously unselected package r-cran-locfit. 368s Preparing to unpack .../48-r-cran-locfit_1.5-9.12-1_arm64.deb ... 368s Unpacking r-cran-locfit (1.5-9.12-1) ... 368s Selecting previously unselected package r-cran-matrix. 368s Preparing to unpack .../49-r-cran-matrix_1.7-3-1_arm64.deb ... 368s Unpacking r-cran-matrix (1.7-3-1) ... 368s Selecting previously unselected package r-cran-nlme. 368s Preparing to unpack .../50-r-cran-nlme_3.1.167-1_arm64.deb ... 368s Unpacking r-cran-nlme (3.1.167-1) ... 368s Selecting previously unselected package r-cran-mgcv. 368s Preparing to unpack .../51-r-cran-mgcv_1.9-1-1_arm64.deb ... 368s Unpacking r-cran-mgcv 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... 369s Setting up libxcb-render0:arm64 (1.17.0-2) ... 369s Setting up unzip (6.0-28ubuntu6) ... 369s Setting up x11-common (1:7.7+23ubuntu3) ... 370s Setting up libdeflate0:arm64 (1.23-1) ... 370s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 370s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 370s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 370s Setting up zip (3.0-14ubuntu2) ... 370s Setting up libblas3:arm64 (3.12.1-2) ... 370s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 370s Setting up fonts-dejavu-mono (2.37-8) ... 370s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 370s Setting up fonts-dejavu-core (2.37-8) ... 370s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 370s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 370s Setting up libwebp7:arm64 (1.5.0-0.1) ... 370s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 370s Setting up libthai-data (0.1.29-2build1) ... 370s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 370s Setting up libpaper2:arm64 (2.2.5-0.3) ... 370s Setting up xdg-utils (1.2.1-2ubuntu1) ... 370s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 370s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 370s Setting up libice6:arm64 (2:1.1.1-1) ... 370s Setting up liblapack3:arm64 (3.12.1-2) ... 370s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 370s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 370s Setting up libpaper-utils (2.2.5-0.3) ... 370s Setting up libthai0:arm64 (0.1.29-2build1) ... 370s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 370s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 370s Setting up libsm6:arm64 (2:1.2.4-1) ... 370s Setting up fontconfig (2.15.0-2ubuntu1) ... 372s Regenerating fonts cache... done. 372s Setting up libxft2:arm64 (2.3.6-1build1) ... 372s Setting up libtk8.6:arm64 (8.6.16-1) ... 372s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 372s Setting up libcairo2:arm64 (1.18.2-2) ... 372s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 372s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 372s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 372s Setting up r-base-core (4.4.3-1) ... 372s Creating config file /etc/R/Renviron with new version 372s Setting up r-cran-lattice (0.22-6-1) ... 372s Setting up r-cran-nlme (3.1.167-1) ... 372s Setting up r-cran-spatstat.utils (3.1-2-1) ... 372s Setting up r-cran-locfit (1.5-9.12-1) ... 372s Setting up r-cran-tensor (1.5-4) ... 372s Setting up r-cran-spatstat.univar (3.1-1-1build1) ... 372s Setting up r-cran-abind (1.4-8-1) ... 372s Setting up r-cran-polyclip (1.10-7-1) ... 372s Setting up r-cran-deldir (2.0-4-1build1) ... 372s Setting up r-cran-goftest (1.2-3-1) ... 372s Setting up r-cran-matrix (1.7-3-1) ... 372s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 372s Setting up r-cran-mgcv (1.9-1-1) ... 372s Setting up r-cran-survival (3.8-3-1) ... 372s Setting up r-cran-spatstat.data (3.1-4-1) ... 372s Setting up r-cran-spatstat.geom (3.3-5-1) ... 372s Setting up r-cran-rpart (4.1.24-1) ... 372s Setting up r-cran-spatstat.random (3.3-2-1) ... 372s Setting up r-cran-spatstat.explore (3.3-4-1) ... 372s Setting up r-cran-spatstat.model (3.3-4-1) ... 372s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 372s Setting up r-cran-spatstat (3.3-1-1) ... 372s Processing triggers for install-info (7.1.1-1) ... 372s Processing triggers for libc-bin (2.41-1ubuntu2) ... 372s Processing triggers for man-db (2.13.0-1) ... 375s autopkgtest [16:04:00]: test run-unit-test: [----------------------- 375s BEGIN TEST testsAtoK.R 375s 375s R version 4.4.3 (2025-02-28) -- "Trophy Case" 375s Copyright (C) 2025 The R Foundation for Statistical Computing 375s Platform: aarch64-unknown-linux-gnu 375s 375s R is free software and comes with ABSOLUTELY NO WARRANTY. 375s You are welcome to redistribute it under certain conditions. 375s Type 'license()' or 'licence()' for distribution details. 375s 375s R is a collaborative project with many contributors. 375s Type 'contributors()' for more information and 375s 'citation()' on how to cite R or R packages in publications. 375s 375s Type 'demo()' for some demos, 'help()' for on-line help, or 375s 'help.start()' for an HTML browser interface to help. 375s Type 'q()' to quit R. 375s 375s > #' 375s > #' Header for all (concatenated) test files 375s > #' 375s > #' Require spatstat.linnet 375s > #' Obtain environment variable controlling tests. 375s > #' 375s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 375s > 375s > require(spatstat.linnet) 375s Loading required package: spatstat.linnet 375s Loading required package: spatstat.data 376s Loading required package: spatstat.univar 376s spatstat.univar 3.1-1 376s Loading required package: spatstat.geom 376s spatstat.geom 3.3-5 376s Loading required package: spatstat.random 376s spatstat.random 3.3-2 376s Loading required package: spatstat.explore 376s Loading required package: nlme 377s spatstat.explore 3.3-4 377s Loading required package: spatstat.model 377s Loading required package: rpart 377s spatstat.model 3.3-4 377s spatstat.linnet 3.2-5 377s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 377s > ALWAYS <- TRUE 377s > cat(paste("--------- Executing", 377s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 377s + "test code -----------\n")) 377s --------- Executing **RESTRICTED** subset of test code ----------- 377s > #' tests/aucroc.R 377s > #' 377s > #' AUC and ROC code 377s > #' 377s > #' $Revision: 1.6 $ $Date: 2020/11/02 06:26:45 $ 377s > 377s > local({ 377s + if(FULLTEST) { 377s + A <- roc(spiders, "x") 377s + B <- auc(spiders, "y") 377s + fut <- lppm(spiders ~ I(y-x)) 377s + f <- roc(fut) 377s + g <- auc(fut) 377s + } 377s + }) 377s > ## tests/cdf.test.R 377s > 377s > 377s > local({ 377s + NSIM <- 9 377s + op <- spatstat.options(ndummy.min=16, npixel=32) 377s + op <- spatstat.options(ndummy.min=16, npixel=32) 377s + if(ALWAYS) { 377s + ## (3) linear networks 377s + set.seed(42) 377s + X <- runiflpp(20, simplenet) 377s + cdf.test(X, "x") 377s + if(FULLTEST) { 377s + cdf.test(X, "x", "cvm") 377s + cdf.test(X %mark% runif(20), "x") 377s + } 377s + fit <- lppm(X ~1) 377s + cdf.test(fit, "y", "cvm", nsim=NSIM) 377s + if(FULLTEST) { 377s + cdf.test(fit, "y", nsim=NSIM) 377s + cdf.test(fit, "y", "ad", nsim=NSIM) 377s + } 377s + if(FULLTEST) { 377s + ## marked 377s + cdf.test(chicago, "y") 377s + cdf.test(subset(chicago, marks != "assault"), "y") 377s + } 377s + } 377s + reset.spatstat.options() 377s + }) 377s > 377s > 377s > #' 377s > #' tests/cluck.R 377s > #' 377s > #' Tests of "click*" functions 377s > #' using queueing feature of spatstatLocator 377s > #' 377s > #' $Revision: 1.8 $ $Date: 2022/10/23 00:45:36 $ 377s > 377s > local({ 377s + Y <- coords(runiflpp(6, simplenet)) 377s + if(FULLTEST) { 377s + #' clicklpp 377s + spatstat.utils::queueSpatstatLocator(Y) 377s + XL <- clicklpp(simplenet) 377s + } 377s + if(ALWAYS) { 377s + spatstat.utils::queueSpatstatLocator(Y) 377s + XM <- clicklpp(simplenet, n=3, types=c("a", "b")) 377s + } 377s + if(ALWAYS) { 377s + #' lineardisc 377s + plot(simplenet) 377s + spatstat.utils::queueSpatstatLocator(as.ppp(runiflpp(1, simplenet))) 377s + V <- lineardisc(simplenet, r=0.3) 377s + } 377s + }) 377s Ready to click.. 377s > #' 377s > #' tests/disconnected.R 377s > #' 377s > #' disconnected linear networks 377s > #' 377s > #' $Revision: 1.4 $ $Date: 2020/04/28 12:58:26 $ 377s > 377s > 377s > local({ 377s + 377s + #' disconnected network 377s + m <- simplenet$m 377s + m[4,5] <- m[5,4] <- m[6,10] <- m[10,6] <- m[4,6] <- m[6,4] <- FALSE 377s + L <- linnet(vertices(simplenet), m) 377s + if(FULLTEST) { 377s + L 377s + summary(L) 377s + is.connected(L) 377s + Z <- connected(L, what="components") 377s + } 377s + 377s + #' point pattern with no points in one connected component 377s + set.seed(42) 377s + X <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L) 377s + B <- lineardirichlet(X) 377s + if(FULLTEST) { 377s Warning messages: 377s 1: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 377s for 'Points of type ‘a’ ' in 'mbcsToSbcs': ' substituted for ‘ (U+2018) 377s 2: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 377s for 'Points of type ‘a’ ' in 'mbcsToSbcs': ' substituted for ’ (U+2019) 377s 3: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 377s for 'Points of type ‘b’ ' in 'mbcsToSbcs': ' substituted for ‘ (U+2018) 377s 4: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 377s for 'Points of type ‘b’ ' in 'mbcsToSbcs': ' substituted for ’ (U+2019) 377s + plot(B) 377s + summary(B) 377s + } 377s + if(ALWAYS) { 377s + D <- pairdist(X) 377s + A <- nndist(X) 377s + } 377s + if(FULLTEST) { 377s + H <- nnwhich(X) 377s + Y <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L) 377s + G <- nncross(X, Y) 377s + J <- crossdist(X, Y) 377s + plot(distfun(X)) # includes evaluation of nncross(what="dist") 377s + } 377s + 377s + #' K functions in disconnected network 377s + if(ALWAYS) { 377s + K <- linearK(X) 377s + lamX <- intensity(X) 377s + nX <- npoints(X) 377s + KI <- linearKinhom(X, lambda=rep(lamX, nX)) 377s + P <- linearpcf(X) 377s + PJ <- linearpcfinhom(X, lambda=rep(lamX, nX)) 377s + } 377s + Y <- X %mark% factor(rep(1:2, nX)[1:nX]) 377s + if(FULLTEST) { 377s + Y1 <- split(Y)[[1]] 377s + Y2 <- split(Y)[[2]] 377s + KY <- linearKcross(Y) 377s + PY <- linearpcfcross(Y) 377s + KYI <- linearKcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)), 377s + lambdaJ=rep(intensity(Y2), npoints(Y2))) 377s + PYI <- linearpcfcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)), 377s + lambdaJ=rep(intensity(Y2), npoints(Y2))) 377s + } 377s + 377s + #' internal utilities 377s + if(FULLTEST) { 377s + K <- ApplyConnected(X, linearK, rule=function(...) list()) 377s + } 377s + }) 377s > 377s > 377s > # 377s > # tests/envelopes.R 377s > # 377s > # Test validity of envelope data 377s > # 377s > # $Revision: 1.29 $ $Date: 2024/01/10 13:45:29 $ 377s > # 377s > 377s > local({ 377s + 377s + 377s + 377s + 377s + 377s + 377s + 377s + 377s + 377s + if(FULLTEST) { 377s + X <- runiflpp(10, simplenet) 377s + Xr <- X %mark% runif(10) 377s + Xc <- X %mark% factor(letters[c(1:4,3,2,4:1)]) 377s + X2 <- X %mark% data.frame(height=runif(10), width=runif(10)) 377s + 377s + E <- envelope(X, linearK, nsim=9) 377s + Er <- envelope(Xr, linearK, nsim=9) 377s + Ec <- envelope(Xc, linearK, nsim=9) 377s + E2 <- envelope(X2, linearK, nsim=9) 377s + 377s + Erf <- envelope(Xr, linearK, nsim=9, fix.n=TRUE) 377s Warning message: 377s Network is not connected 377s + E2f <- envelope(X2, linearK, nsim=9, fix.n=TRUE) 377s + 377s + Ecf <- envelope(Xc, linearK, nsim=9, fix.n=TRUE) 377s + Ecm <- envelope(Xc, linearKcross, nsim=9, fix.n=TRUE, fix.marks=TRUE) 377s + 377s + fut <- lppm(Xc ~ marks) 377s + EEf <- envelope(fut, linearK, fix.n=TRUE) 377s + EEm <- envelope(fut, linearKcross, fix.n=TRUE, fix.marks=TRUE) 377s + } 377s + 377s + ## close 'local' 377s + }) 377s > # 377s > # tests/func.R 377s > # 377s > # $Revision: 1.9 $ $Date: 2022/10/23 00:48:40 $ 377s > # 377s > # Tests of 'funxy' infrastructure etc 377s > 377s > if(FULLTEST) { 377s + local({ 377s + ## Check the peculiar function-building code in funxy 377s + W <- square(1) 377s + f1a <- function(x, y) sqrt(x^2 + y^2) 377s + F1a <- funxy(f1a, W) 377s + Y <- runiflpp(5, simplenet) 377s + b <- F1a(Y) 377s + }) 377s + } 377s > 377s > 377s > #' tests/hypotests.R 377s > #' Hypothesis tests 377s > #' 377s > #' $Revision: 1.10 $ $Date: 2023/07/17 07:30:48 $ 377s > 377s > if(FULLTEST) { 377s + local({ 377s + berman.test(spiders, "x") 377s + berman.test(lppm(spiders ~ x), "y") 377s + 377s + }) 377s + } 377s > # 377s > # tests/imageops.R 377s > # 377s > # $Revision: 1.43 $ $Date: 2023/08/29 01:03:59 $ 377s > # 377s > 377s > 377s > 377s > if(FULLTEST) { 377s + local({ 377s + d <- distmap(cells, dimyx=32) 377s + ## linear networks 377s + ee <- d[simplenet, drop=FALSE] 377s + eev <- d[simplenet] 377s + }) 377s + } 377s > 377s BEGIN TEST testsL.R 377s 377s R version 4.4.3 (2025-02-28) -- "Trophy Case" 377s Copyright (C) 2025 The R Foundation for Statistical Computing 377s Platform: aarch64-unknown-linux-gnu 377s 377s R is free software and comes with ABSOLUTELY NO WARRANTY. 377s You are welcome to redistribute it under certain conditions. 377s Type 'license()' or 'licence()' for distribution details. 377s 377s R is a collaborative project with many contributors. 377s Type 'contributors()' for more information and 377s 'citation()' on how to cite R or R packages in publications. 377s 377s Type 'demo()' for some demos, 'help()' for on-line help, or 377s 'help.start()' for an HTML browser interface to help. 377s Type 'q()' to quit R. 377s 378s > #' 378s > #' Header for all (concatenated) test files 378s > #' 378s > #' Require spatstat.linnet 378s > #' Obtain environment variable controlling tests. 378s > #' 378s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 378s > 378s > require(spatstat.linnet) 378s Loading required package: spatstat.linnet 378s Loading required package: spatstat.data 378s Loading required package: spatstat.univar 378s spatstat.univar 3.1-1 378s Loading required package: spatstat.geom 379s spatstat.geom 3.3-5 379s Loading required package: spatstat.random 379s spatstat.random 3.3-2 379s Loading required package: spatstat.explore 379s Loading required package: nlme 379s spatstat.explore 3.3-4 379s Loading required package: spatstat.model 379s Loading required package: rpart 379s spatstat.model 3.3-4 379s spatstat.linnet 3.2-5 379s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 379s > ALWAYS <- TRUE 379s > cat(paste("--------- Executing", 379s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 379s + "test code -----------\n")) 379s --------- Executing **RESTRICTED** subset of test code ----------- 379s > # 379s > # tests/lppstuff.R 379s > # 379s > # Tests for lpp code 379s > # 379s > # $Revision: 1.74 $ $Date: 2025/01/18 03:44:09 $ 379s > 379s > 379s > local({ 379s + if(ALWAYS) { 379s + #' make test data 379s + Xsimple <- runiflpp(6, simplenet) 379s + Xchic <- chicago[c(TRUE, FALSE)] 379s + Xspid <- spiders[c(TRUE, FALSE)] 379s + Xdend <- dendrite[seq_len(npoints(dendrite)) %% 8 == 0] 379s + } 379s + 379s + if(FULLTEST) { 379s + #' lpp class support 379s + Xone <- Xsimple %mark% runif(6) 379s + Xtwo <- Xsimple %mark% data.frame(a=1:6, b=runif(6)) 379s + print(summary(Xone)) 379s + print(summary(Xtwo)) 379s + plot(Xsimple, show.window=TRUE) 379s + plot(Xone) 379s + plot(Xtwo, do.several=FALSE) 379s + #' geometry etc 379s + rotate(Xsimple, pi/3, centre=c(0.2,0.3)) 379s + superimpose.lpp(L=simplenet) 379s + W <- Window(Xsimple) 379s + #' cut.lpp 379s + tes <- lineardirichlet(Xsimple[1:4]) 379s + f <- as.linfun(tes) 379s + Z <- as.linim(f) 379s + cut(Xsimple, tes) 379s + cut(Xsimple, f) 379s + cut(Xsimple, Z) 379s + 379s + #' check 'normalise' option in linearKinhom 379s + fit <- lppm(Xsimple ~x) 379s + K <- linearKinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE) 379s + plot(K) 379s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE) 379s + plot(g) 379s + K <- linearKinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE) 379s + plot(K) 379s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE) 379s + plot(g) 379s + ## other code blocks 379s + K <- linearKinhom(Xsimple, lambda=fit, correction="none", ratio=TRUE) 379s + g <- linearpcf(Xsimple, correction="none", ratio=TRUE) 379s + g1 <- linearpcf(Xsimple[1], ratio=TRUE) 379s + K1 <- linearKcross(dendrite[1], "thin", "thin", ratio=TRUE) 379s + ## check empty patterns OK 379s + X0 <- runiflpp(0, simplenet) 379s + print(X0) 379s + g <- linearpcf(X0, ratio=TRUE) 379s + } 379s + 379s + ## nearest neighbour distances 379s + eps <- sqrt(.Machine$double.eps) 379s + f <- function(mat,k) { apply(mat, 1, function(z,n) { sort(z)[n] }, n=k+1) } 379s + g <- function(mat,k) { apply(mat, 1, function(z,n) { order(z)[n] }, n=k+1) } 379s + 379s + if(ALWAYS) { 379s + nn <- nndist(Xspid) 379s + nnP <- f(pairdist(Xspid), 1) 379s + if(any(abs(nn - nnP) > eps)) 379s + stop("nndist.lpp does not agree with pairdist.lpp") 379s + 379s + nw <- nnwhich(Xspid) 379s + nwP <- g(pairdist(Xspid), 1) 379s + if(any(nw != nwP)) 379s + stop("nnwhich.lpp does not agree with pairdist") 379s + } 379s + 379s + if(FULLTEST) { 379s + #' code blocks in nndist.lpp/nnwhich.lpp 379s + #' non-sparse network, interpreted code 379s + Ad <- nndist(Xspid, method="interpreted") 379s + Aw <- nnwhich(Xspid, method="interpreted") 379s + #' sparse network, older C code 379s + opa <- spatstat.options(Cnndistlpp=FALSE) 379s + Bd <- nndist(dendrite) 379s + Bw <- nnwhich(dendrite) 379s + spatstat.options(opa) 379s + #' undefined nearest neighbours 379s + Ed <- nndist(Xspid[1:3], k=1:3) 379s + Ew <- nnwhich(Xspid[1:3], k=1:3) 379s + 379s + #' trivial cases in nncross.lpp 379s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet), 379s + what="which", format="list")$which 379s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet), 379s + what="dist", format="list")$dist 379s + } 379s + 379s + if(ALWAYS) { 379s + #' compare algorithms 379s + ZZ <- split(Xchic) 379s + XX <- ZZ$damage 379s + YY <- ZZ$assault 379s + op <- spatstat.options(Cnncrosslpp=FALSE) 379s + a <- nncross(XX, YY) 379s + spatstat.options(Cnncrosslpp=TRUE) 379s + b <- nncross(XX, YY) 379s + if(any(a$which != b$which)) 379s + stop("Inconsistent values of nncross.lpp()$which from different C code") 379s + if(max(abs(a$dist - b$dist)) > eps) 379s + stop("Inconsistent values of nncross.lpp()$dist from different C code") 379s + 379s + spatstat.options(Cnncrosslpp=TRUE) 379s + b2 <- nncross(XX, YY, k=1:2, what="which") 379s + if(any(b2$which.1 != b$which)) 379s + stop("inconsistent values of nncross.lpp()$which from k=1:2 and k=1") 379s + a2 <- nncross(XX, YY, k=1:2, what="dist") 379s + if(max(abs(a2$dist.1 - a$dist)) > eps) 379s + stop("Inconsistent values of nncross.lpp()$dist from k=1:2 and k=1") 379s + 379s + spatstat.options(Cnncrosslpp=TRUE) 379s + ii <- seq_len(npoints(XX)) 379s + w1 <- nnwhich(XX) 379s + w2 <- nncross(XX, XX, iX=ii, iY=ii, what="which") 379s + w3 <- nncross(XX, XX, iX=ii, iY=ii, what="which", method="interpreted") 379s + if(any(w1 != w2)) 379s + stop("nnwhich.lpp disagrees with nncross.lpp(iX, iY)") 379s + if(any(w2 != w3)) 379s + stop("Different results for nncross.lpp(iX, iY, 'which') using R and C") 379s + d1 <- nndist(XX) 379s + d2 <- nncross(XX, XX, iX=ii, iY=ii, what="dist") 379s + d3 <- nncross(XX, XX, iX=ii, iY=ii, what="dist", method="interpreted") 379s + if(max(abs(d1-d2)) > eps) 379s + stop("nndist.lpp disagrees with nncross.lpp(iX, iY)") 379s + if(max(abs(d2-d3)) > eps) 379s + stop("Different results for nncross.lpp(iX, iY, 'dist') using R and C") 379s + spatstat.options(Cnncrosslpp=FALSE) 379s + w4 <- nncross(XX, XX, iX=ii, iY=ii, what="which") 379s + d4 <- nncross(XX, XX, iX=ii, iY=ii, what="dist") 379s + if(any(w2 != w4)) 379s + stop("Different results for nncross.lpp(iX, iY, 'which') fast and slow C") 379s + if(max(abs(d2-d4)) > eps) 379s + stop("Different results for nncross.lpp(iX, iY, 'dist') fast and slow C") 379s + spatstat.options(Cnncrosslpp=TRUE) 379s + } 379s + 379s + reset.spatstat.options() 379s + 379s + if(FULLTEST) { 379s + ## test handling marginal cases 379s + xyd <- nncross(XX, YY[1]) 379s + A <- runiflpp(5, simplenet) 379s + B <- runiflpp(2, simplenet) 379s + aaa <- nncross(A,B,k=3:5) #' all undefined 379s + aaa <- nncross(A,B,k=1:4) #' some undefined 379s + spatstat.options(Cnncrosslpp=FALSE) 379s + aaa <- nncross(A,B,k=3:5) 379s + aaa <- nncross(A,B,k=1:4) 379s + bbb <- nncross(B,A, iX=1:2, iY=1:5) # another code block 379s + spatstat.options(Cnncrosslpp=TRUE) 379s + reset.spatstat.options() 379s + } 379s + 379s + if(FULLTEST) { 379s + ## as.linnet.psp (Suman's example) 379s + Lines <- as.data.frame(as.psp(simplenet)) 379s + newseg <- c(Lines[1,1:2], Lines[10,3:4]) 379s + Lines <- rbind(Lines, newseg) 379s + Y <- as.psp(Lines, window=Window(simplenet)) 379s + marks(Y) <- c(3, 4, 5, 5, 3, 4, 5, 5,5, 5,1) 379s + Z <- as.linnet(Y) # can crash if marks don't match segments 379s + 379s + ## Test linnet surgery code 379s + RL <- joinVertices(simplenet, matrix(c(2,3), ncol=2)) # redundant edge 379s + RZ <- joinVertices(Z, matrix(c(2,3), ncol=2), marks=6) # redundant edge 379s + JZ <- joinVertices(Z, matrix(c(2,7), ncol=2), marks=6) # new edge 379s + set.seed(42) 379s + X <- runiflpp(30, simplenet) 379s + V <- runiflpp(30, simplenet) 379s + XV <- insertVertices(X, V) 379s + validate.lpp.coords(XV, context="calculated by insertVertices") 379s + X0 <- insertVertices(X, x=numeric(0), y=numeric(0)) 379s + ## vertices on boundary of new window 379s + LL <- simplenet[boundingbox(vertices(simplenet))] 379s + 379s + ## thinNetwork for lpp and linim 379s + Xthin <- thinNetwork(X, retainedges=1:3) 379s + D <- density(X, 0.1) 379s + Dthin <- thinNetwork(D, retainedges=1:3) 379s + 379s + ## Test [.lpp internal data 379s + B <- owin(c(0.1,0.7),c(0.19,0.6)) 379s + XB <- X[B] 379s + validate.lpp.coords(XB, context="returned by [.lpp") 379s + } 379s + 379s + ## Tests related to linearK, etc 379s + testcountends <- function(X, r=100, s=1) { 379s + if(s != 1) { 379s + X <- rescale(X, s) 379s + r <- r/s 379s + } 379s + L <- as.linnet(X) 379s + n1 <- countends(L, X[1], r) 379s + n2 <- npoints(lineardisc(L, X[1], r, plotit=FALSE)$endpoints) 379s + if(n1 != n2) 379s + stop(paste("Incorrect result from countends:", 379s + n1, "!=", n2, 379s + spatstat.utils::paren(paste("scale=", 1/s))), 379s + call.=FALSE) 379s + } 379s + 379s + if(ALWAYS) { 379s + ## original scale 379s + XU <- unmark(Xchic) 379s + testcountends(XU) 379s + ## finer scale 379s + testcountends(XU, s=1000) 379s + #' disconnected 379s + L <- thinNetwork(simplenet, retainedges = -c(3,8)) 379s + S <- as.psp(L) 379s + x <- midpoints.psp(S)[1] 379s + len <- lengths_psp(S)[1] 379s + A <- lineardisc(L, x, len, plotit=FALSE) #involves many segments of network 379s + B <- lineardisc(L, x, len/5, plotit=FALSE) # involves one segment of network 379s + op <- spatstat.options(Ccountends=FALSE) 379s + A <- lineardisc(L, x, len, plotit=FALSE) 379s + B <- lineardisc(L, x, len/5, plotit=FALSE) 379s + reset.spatstat.options() 379s + 379s + ## Test algorithms for boundingradius.linnet 379s + L <- as.linnet(chicago, sparse=TRUE) 379s + L$boundingradius <- NULL # artificially remove 379s + opa <- spatstat.options(Clinearradius=FALSE) 379s + bR <- as.linnet(L, sparse=FALSE)$boundingradius 379s + spatstat.options(Clinearradius=TRUE) 379s + bC <- as.linnet(L, sparse=FALSE)$boundingradius 379s + spatstat.options(opa) 379s + if(abs(bR-bC) > 0.001 * (bR+bC)/2) 379s + stop("Disagreement between R and C algorithms for boundingradius.linnet", 379s + call.=FALSE) 379s + } 379s + 379s + if(FULLTEST) { 379s + ## linnet things 379s + is.connected(as.linnet(dendrite)) 379s + zik <- rescale(Xchic, 39.37/12, "m") 379s + Simon <- simplenet 379s + unitname(Simon) <- list("metre", "metres", 0.5) 379s + b <- rescale(Simon) 379s + ds <- density(simplenet, 0.05) 379s + } 379s + 379s + if(ALWAYS) { 379s + ## invoke dist2dpath 379s + LS <- as.linnet(simplenet, sparse=TRUE) 379s + LF <- as.linnet(LS, sparse=FALSE) 379s + ## direct call dist2dpath 379s + d <- simplenet$dpath 379s + d[!simplenet$m] <- Inf 379s + diag(d) <- 0 379s + dd <- dist2dpath(d, method="interpreted") 379s + ra <- range(dd - simplenet$dpath) 379s + if(max(abs(ra)) > sqrt(.Machine$double.eps)) 379s + stop("dist2dpath gives different answers in C and R code") 379s + } 379s + 379s + if(FULLTEST) { 379s + ## integral.linim with missing entries 379s + xcoord <- linfun(function(x,y,seg,tp) { x }, domain(Xchic)) 379s + xcoord <- as.linim(xcoord, dimyx=32) 379s + integral(xcoord) 379s + 379s + ## Math.linim 379s + range(xcoord) 379s + stopifnot(is.linim(sqrt(xcoord))) 379s + stopifnot(is.linim(-xcoord)) 379s + stopifnot(is.linim(xcoord + xcoord)) 379s + stopifnot(is.linim(xcoord/3)) 379s + 379s + ## options to plot.linim 379s + plot(xcoord, legend=FALSE) 379s + plot(xcoord, leg.side="top") 379s + plot(xcoord, style="width", leg.side="bottom") 379s + 379s + ## as.linim.linim 379s + xxcc <- as.linim(xcoord) 379s + xxcceps <- as.linim(xcoord, eps=15) 379s + xxccdel <- as.linim(xcoord, delta=30) 379s + df1 <- attr(xxcc, "df") 379s + df2 <- attr(xxccdel, "df") 379s + df3 <- resampleNetworkDataFrame(df1, df2) 379s + 379s + ## linim with complex values 379s + Zc <- as.im(function(x,y){(x-y) + x * 1i}, Frame(simplenet)) 379s + Fc <- linim(simplenet, Zc) 379s + print(Fc) 379s + print(summary(Fc)) 379s + 379s + ## linim with df provided 379s + Z <- as.im(function(x,y) {x-y}, Frame(simplenet)) 379s + X <- linim(simplenet, Z) 379s + df <- attr(X, "df") 379s + XX <- linim(simplenet, Z, df=df) 379s + dfwithout <- df[, colnames(df) != "values"] 379s + XXX <- linim(simplenet, Z, df=dfwithout) 379s + plot(XXX, zlim=c(-1,1)) 379s + plot(XXX, legend=FALSE) 379s + plot(XXX, leg.side="bottom") 379s + 379s + ## lpp with multiple columns of marks 379s + M <- Xchic 379s + marks(M) <- cbind(type=marks(M), data.frame(distnearest=nndist(M))) 379s + plot(M, main="") 379s + summary(M) 379s + MM <- cut(M) 379s + 379s + #' other cases 379s + CC <- cut(Xchic) 379s + nd <- nndist(Xspid) 379s + SX <- cut(Xspid %mark% nd, breaks=3) 379s + SX <- cut(Xspid, nd, breaks=c(0,100,200,Inf), include.lowest=TRUE) 379s + 379s + ## linequad 379s + Y <- Xsimple %mark% factor(rep(c("A", "B"), 3)) 379s + aX <- linequad(Xsimple) 379s + aY <- linequad(Y) 379s + aXR <- linequad(Xsimple, random=TRUE) 379s + aYR <- linequad(Y, random=TRUE) 379s + P <- as.ppp(Xsimple) 379s + S <- as.psp(domain(Xsimple)) 379s + d <- linequad(P, S) 379s + oop <- spatstat.options(Clinequad=FALSE) 379s + bX <- linequad(Xsimple) 379s + spatstat.options(oop) 379s + 379s + ## other internal utilities 379s + df <- pointsAlongNetwork(simplenet, 0.05) 379s + X <- as.ppp(df[,c("x", "y")], W=Frame(simplenet)) 379s + A <- local2lpp(simplenet, seg=df$seg, tp=df$tp, X=X, df.only=FALSE) 379s + 379s + ## mark-mark scatterplot uses pairdist 379s + X <- runiflpp(20, simplenet) %mark% runif(20) 379s + markmarkscatter(X, 0.2) 379s + markmarkscatter(X[FALSE], 0.1) 379s + 379s + ## tree branches 379s + ## make a simple tree 379s + m <- simplenet$m 379s + m[8,10] <- m[10,8] <- FALSE 379s + L <- linnet(vertices(simplenet), m) 379s + tb <- treebranchlabels(L, 1) 379s + X <- runiflpp(30, L) 379s + ## delete branch B 379s + XminusB <- deletebranch(X, "b", tb) 379s + ## extract branch B 379s + XB <- extractbranch(X, "b", tb) 379s + 379s + ## cases of lintess() 379s + A <- lintess(simplenet) # argument df missing 379s + S <- as.psp(simplenet) 379s + ns <- nsegments(S) 379s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns]) 379s + M <- data.frame(len=lengths_psp(S), ang=angles.psp(S)) 379s + V <- lintess(simplenet, df, marks=M) 379s + 379s + ## methods for class lintess 379s + U <- unmark(V) 379s + U <- unstack(V) 379s + print(summary(V)) 379s + W <- Window(V) 379s + plot(V, style="image") 379s + plot(V, style="width") 379s + 379s + ## linear tessellations infrastructure 379s + nX <- 100 379s + nY <- 20 379s + X <- runiflpp(nX, simplenet) 379s + Y <- runiflpp(nY, simplenet) 379s + tes <- divide.linnet(Y) 379s + cX <- coords(X) 379s + iI <- lineartileindex(cX$seg, cX$tp, tes, method="interpreted") 379s + iC <- lineartileindex(cX$seg, cX$tp, tes, method="C") 379s + iE <- lineartileindex(cX$seg, cX$tp, tes, method="encode") 379s + if(!identical(iI,iC)) 379s + stop("conflicting results from lineartileindex (interpreted vs C)") 379s + if(!identical(iI,iE)) 379s + stop("conflicting results from lineartileindex (interpreted vs encoded)") 379s + iA <- as.linfun(tes)(X) 379s + if(!identical(iI, iA)) 379s + stop("disagreement between as.linfun.lintess and lineartileindex") 379s + 379s + ## intersection of lintess 379s + X <- divide.linnet(runiflpp(4, simplenet)) 379s + Y <- divide.linnet(runiflpp(3, simplenet)) 379s + nX <- summary(X)$nt 379s + nY <- summary(Y)$nt 379s + marks(X) <- factor(letters[1L + (seq_len(nX) %% 2)]) 379s + marks(Y) <- runif(nY) 379s + Zmm <- intersect.lintess(X,Y) 379s + Zum <- intersect.lintess(unmark(X),Y) 379s + Zmu <- intersect.lintess(X,unmark(Y)) 379s + 379s + } 379s + 379s + if(FULLTEST) { 379s + #' handling by 'solist', 'unstack', 'plot.solist' etc 379s + L <- simplenet 379s + X <- runiflpp(5, L) %mark% cbind(a=1:5, b=letters[1:5]) 379s + ns <- nsegments(L) 379s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns]) 379s + S <- lintess(L, df) 379s + f <- as.linfun(S) 379s + g <- as.linfun(S, values=seq_len(nsegments(L))) 379s + V <- as.linim(f) 379s + Z <- as.linim(g) 379s + shebang <- solist(L=L, X=X, S=S, f=f, g=g, V=V, Z=Z) 379s + plot(shebang) 379s + plot(shebang, valuesAreColours=FALSE) 379s + kapow <- unstack(shebang) 379s + plot(kapow) 379s + } 379s + 379s + #' kernel density estimation 379s + X <- Xsimple[1:5] 379s + w <- runif(npoints(X)) 379s + if(ALWAYS) { 379s + #' density.lpp -> densityHeat, includes platform-dependent code 379s + D <- density(X, 0.05) 379s + D <- density(X, 0.05, weights=w) 379s + } 379s + if(FULLTEST) { 379s + #' code blocks 379s + D <- density(X[FALSE], 0.05) 379s + D <- density(X, Inf) 379s + D <- density(X, 0.05, finespacing=TRUE) # } 379s + D <- density(X, 0.05, eps=0.008) # } code blocks in resolve.heat.steps 379s + D <- density(X, 0.05, dimyx=256) # } 379s + } 379s + if(ALWAYS) { 379s + DX <- density(X, 0.05, at="points", fastmethod="a", debug=TRUE) 379s + DX <- density(X, 0.05, at="points", fast=FALSE, debug=TRUE) 379s + ## densityfun.lpp, code blocks 379s + ff <- densityfun(X, 0.05, nsigma=Inf) 379s + } 379s + if(FULLTEST) { 379s + #' disconnected network 379s + L <- thinNetwork(simplenet, retainedges=-c(3,5)) 379s + Y <- runiflpp(5, L) 379s + D <- density(Y, 0.05) 379s + D <- density(Y, 0.05, weights=w) 379s + D <- density(Y, Inf) 379s + g <- flatdensityfunlpp(Y, disconnect=FALSE) 379s + a <- flatdensityatpointslpp(Y, disconnect=FALSE) 379s + #' density.lpp -> densityEqualSplit 379s + D <- density(X, 0.05, kernel="e", weights=w) 379s + D <- density(X, Inf, kernel="e") 379s + D <- density(Y, 0.05, kernel="e", weights=w) 379s + D <- density(Y, Inf, kernel="e") 379s + } 379s + if(ALWAYS) { 379s + #' density.lpp -> densityQuick.lpp 379s + D <- density(X, 0.05, distance="e", weights=runif(5)) 379s + } 379s + if(FULLTEST) { 379s + D <- density(X, Inf, distance="e") 379s + D <- density(Y, 0.05, distance="e", weights=runif(5)) 379s + D <- density(Y, Inf, distance="e") 379s + ## example from Andrea Gilardi 379s + ## with duplicated points, and points at a vertex 379s + A <- runiflpp(5, simplenet) 379s + V <- lpp(vertices(simplenet)[2:4], simplenet) 379s + B <- superimpose(A, A[3], V) 379s + D <- density(B, sigma=0.2, distance="e", at="points") 379s + if(length(as.numeric(D)) != npoints(B)) 379s + stop("density.lpp(at='points') returns wrong number of values") 379s + G <- superimpose(U=runiflpp(4, simplenet), B=B) 379s + b <- bw.relrisklpp(G, distance="e", nh=2) 379s + } 379s + if(FULLTEST) { 379s + #' densityVoronoi.lpp and related code 379s + densityVoronoi(X, f=0) 379s + densityVoronoi(X, f=1e-8) 379s + densityVoronoi(X, f=1) 379s + densityVoronoi(X[FALSE], f=0.5) 379s + XX <- X[rep(1:npoints(X), 4)] 379s + densityVoronoi(XX, f=0.99999, nrep=5) 379s + densityVoronoi(Y, f=0) 379s + densityVoronoi(Y, f=1e-8) 379s + densityVoronoi(Y, f=1) 379s + densityVoronoi(Y[FALSE], f=0.5) 379s + #' bandwidth selection 379s + bw.voronoi(X, nrep=4, prob=c(0.2, 0.4, 0.6)) 379s + bw.lppl(X) 379s + sug <- seq(0.1, 0.3, by=0.05) 379s + bw.lppl(X, sigma=sug) 379s + bw.lppl(X, sigma=sug, shortcut=FALSE) 379s + bw.lppl(X, sigma=sug, distance="path", shortcut=FALSE) 379s + } 379s + if(ALWAYS) { 379s + #' inhomogeneous K and g 379s + SD <- split(Xdend) 379s + DT <- density(SD[["thin"]], 100, distance="euclidean") 379s + DS <- density(SD[["stubby"]], 100, distance="euclidean") 379s + Kii <- linearKcross.inhom(dendrite, "thin", "thin", DT, DT) 379s + Kij <- linearKcross.inhom(dendrite, "thin", "stubby", DT, DS, 379s + correction="none", ratio=TRUE) 379s + gii <- linearpcfcross.inhom(dendrite, "thin", "thin", DT, DT) 379s + gij <- linearpcfcross.inhom(dendrite, "thin", "stubby", DT, DS, 379s + correction="none", ratio=TRUE) 379s + } 379s + if(FULLTEST) { 379s + Kx <- linearKcross.inhom(dendrite[1], "thin", "stubby", DT, DS) 379s + gx <- linearpcfcross.inhom(dendrite[1], "thin", "stubby", DT, DS) 379s + } 379s + 379s + if(FULLTEST) { 379s + ## infrastructure for density.lpp 379s + L <- domain(Xchic) 379s + A <- resolve.heat.steps(100, L=L, dx=1) 379s + B <- resolve.heat.steps(100, L=L, dt=0.2) 379s + C <- resolve.heat.steps(100, L=L, niter=1e5) 379s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=3) 379s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=Inf) 379s + D <- resolve.heat.steps(100, L=L, dx=1, dt=0.2) 379s + E <- resolve.heat.steps(500, L=L, dt=0.5, iterMax=2e5) 379s + A <- resolve.heat.steps(1, L=simplenet, dt=2, dx=0.05) 379s + B <- resolve.heat.steps(1, L=simplenet) 379s + C <- resolve.heat.steps(1, L=simplenet, finespacing=FALSE) 379s + D <- resolve.heat.steps(1, seglengths=rep(0.7, 5), maxdegree=4, AMbound=7) 379s + ## vertices on boundary 379s + L <- simplenet 379s + L <- L[boundingbox(vertices(L))] 379s + X <- as.lpp(0.41259, 0.6024, L=L) 379s + D <- density(X, 0.1) 379s + } 379s + 379s + if(FULLTEST) { 379s + #' multitype 379s + #' density.splitppx 379s + Z <- split(Xchic)[1:3] 379s + D <- density(Z, 7) 379s + #' relrisk.lpp for 3 types 379s + U <- do.call(superimpose, Z) 379s + A <- relrisk(U, 20, control=1, relative=TRUE) 379s + A <- relrisk(U, 20, control=1, relative=TRUE, at="points") 379s + #' relrisk.lpp for 2 types 379s + V <- do.call(superimpose, Z[1:2]) 379s + A <- relrisk(V, 20, control=2, casecontrol=FALSE) # issues warning 379s + B <- relrisk(V, 20, control="assault", case=2, relative=TRUE) 379s + D <- relrisk(V, 20, control=1, case="burglary", relative=TRUE, at="points") 379s + #' bw.relrisklpp 379s + b1 <- bw.relrisklpp(V, hmax=3, fudge=0.01, 379s + method="leastsquares", reference="sigma") 379s + b2 <- bw.relrisklpp(V, hmax=3, fudge=0.01, 379s + method="KelsallDiggle", reference="uniform") 379s + } 379s + 379s + if(FULLTEST) { 379s + #' pairs.linim 379s + Z <- density(Xsimple, 0.5, distance="euclidean") 379s + pairs(solist(Z)) 379s + pairs(solist(A=Z)) 379s + U <- density(as.ppp(Xsimple), 0.5) 379s + pairs(solist(U, Z)) 379s + pairs(solist(Z, U)) 379s + } 379s + 379s + if(FULLTEST) { 379s + #' complex-valued functions and images 379s + f <- function(x,y,seg,tp) { x + y * 1i } 379s + g <- linfun(f, simplenet) 379s + h <- as.linim(g) 379s + plot(Re(h)) 379s + plot(h) 379s + plot(g) 379s + integral(h) 379s + integral(g) 379s + } 379s + 379s + ## 'lixellate' - involves C code 379s + if(ALWAYS) { 379s + ## Cases where no subdivision occurs 379s + P <- runiflpp(4, simplenet) 379s + A <- lixellate(P, nsplit=1) 379s + B <- lixellate(P, eps=2) 379s + ## bug in 'lixellate' (Jakob Gulddahl Rasmussen) 379s + X <- ppp(c(0,1), c(0,0), owin()) 379s + L <- linnet(X, edges = matrix(1:2, ncol=2)) 379s + Y <- lpp(X, L) 379s + ## The left end point is OK 379s + lixellate(Y[1], nsplit=30) 379s + d <- density(Y[1], .1) 379s + ## The right end point gave an error 379s + lixellate(Y[2], nsplit=30) 379s + d <- density(Y[2], .1) 379s + } 379s + 379s + if(FULLTEST) { 379s + ## make some bad data and repair it 379s + L <- simplenet 379s + ## reverse edges 379s + a <- L$from[c(FALSE,TRUE)] 379s + L$from[c(FALSE,TRUE)] <- L$to[c(FALSE,TRUE)] 379s + L$to[c(FALSE,TRUE)] <- a 379s + ## duplicate edges 379s + ns <- nsegments(L) 379s + ii <- c(seq_len(ns), 2) 379s + L$from <- L$from[ii] 379s + L$to <- L$to[ii] 379s + L$lines <- L$lines[ii] 379s + ## 379s + Y <- repairNetwork(L) 379s + ## add points 379s + X <- runiflpp(4, L) 379s + Z <- repairNetwork(X) 379s + } 379s + 379s + if(FULLTEST) { 379s + #' random generation bugs and code blocks 379s + A <- runiflpp(5, simplenet, nsim=2) 379s + D <- density(A[[1]], 0.3) 379s + B <- rpoislpp(D, nsim=2) 379s + stopifnot(is.multitype(rlpp(c(10,5), list(a=D,b=D)))) 379s + stopifnot(is.multitype(rlpp(5, list(a=D,b=D)))) 379s + stopifnot(is.multitype(rlpp(c(10,5), D))) 379s + } 379s + 379s + ## rhohat.lppm 379s + if(FULLTEST) { 379s + fut <- lppm(Xspid ~ 1) 379s + rx <- rhohat(fut, "x") 379s + Z <- linfun(function(x,y,seg,tp) { x }, domain(Xspid)) 379s + rZ <- rhohat(fut, Z) 379s + U <- predict(rx) 379s + U <- predict(rZ) 379s + Y <- simulate(rx) 379s + Y <- simulate(rZ) 379s + futm <- lppm(Xchic ~ x + marks) 379s + ry <- rhohat(futm, "y") 379s + U <- predict(ry) 379s + Y <- simulate(ry) 379s + } 379s + 379s + if(ALWAYS) { 379s + #' new code for pairdist.lpp 379s + X <- runiflpp(10, simplenet) 379s + dC <- pairdist(X, method="C") 379s + dI <- pairdist(X, method="interpreted") 379s + if(max(abs(dC - dI)) > 0.01) 379s + stop("pairdist.lpp: disagreement between C and R") 379s + XS <- as.lpp(X, sparse=TRUE) 379s + dS <- pairdist(XS) 379s + if(max(abs(dC - dS)) > 0.01) 379s + stop("pairdist.lpp: disagreement between sparse and non-sparse C") 379s + dU <- pairdist(XS, method="testsymm") # secret option 379s + if(max(abs(dS - dU)) > 0.01) 379s + stop("pairdist.lpp: disagreement between symmetric and asymmetric") 379s + 379s + #' new code for crossdist.lpp 379s + #' non-sparse 379s + v <- split(Xchic) 379s + X <- v$cartheft 379s + Y <- v$burglary 379s + dC <- crossdist(X, Y, method="C") 379s + dI <- crossdist(X, Y, method="interpreted") 379s + if(max(abs(dC - dI)) > 0.01) 379s + stop("crossdist.lpp (non-sparse): disagreement between C and R") 379s + #' convert to sparse 379s + Chuck <- as.lpp(Xchic, sparse=TRUE) 379s + V <- split(Chuck) 379s + X <- V$cartheft 379s + Y <- V$burglary 379s + dS <- crossdist(X, Y) 379s + if(max(abs(dS - dC)) > 0.01) 379s + stop("crossdist.lpp: disagreement between sparse and non-sparse") 379s + #' disconnected 379s + L <- thinNetwork(simplenet, retainedges = -c(3,8)) 379s + X <- runiflpp(20, L) 379s + Y <- runiflpp(15, L) 379s + d <- crossdist(X,Y) 379s + 379s + ## example where the path is very long (covers a previous bug) 379s + X <- dendrite[c(349,563)] 379s + a <- pairdist(X, method="testsymm") 379s + if(max(abs(a-t(a))) > 0.01) 379s + stop("pairdist.lpp: asymmetry for long distances") 379s + b <- pairdist(as.lpp(X, sparse=FALSE)) 379s + if(max(abs(a-b)) > 0.01) 379s + stop("pairdist.lpp: disagreement sparse vs non-sparse for long distance") 379s + } 379s + }) 380s sigma = 0.05 380s Network: 380s total length = 2.90485162043096 380s number of edges = 10 380s average nonzero edge length = 0.290485162043096 380s shortest nonzero edge length = 0.150146561419501 380s Determine dx by default rule 380s Mean Nonzero Edge Length/ 30 = 0.00968283873476987 380s Total Network Length/ 100 = 0.0290485162043096 380s Min Nonzero Edge Length/3 = 0.0500488538065003 380s Minimum of the above = 0.00968283873476987 380s Fine spacing rule: dx = 0.00968283873476987 380s Rounded total number of lixels = 300 380s Adjusted dx = 0.00968283873476987 380s Applying full set of constraints 380s dt (determined by all constraints) = 1.27242139521974e-05 380s Number of iterations (determined from dt) = 98 380s Updated dt = 1.27551020408163e-05 380s alpha = 0.136043732774807 380s Final values: 380s Time step dt = 1.27551020408163e-05 380s Sample spacing dx = 0.00968283873476987 380s Number of iterations niter = 98 380s Number of states saved nsave = 1 380s Subdividing network ...Done. 380s New network: 380s Linear network with 299 vertices and 299 lines 380s Vertices are marked 380s Enclosing window: rectangle = [0, 1] x [0, 1] units 380s Constructing update matrix A ..Done. 380s alpha = 0.136043732774807 380s Building initial state ..Done. 380s Running iterative solver ..Done. 380s Mapping results to spatial location ..Done. 380s sigma = 0.05 380s Network: 380s total length = 2.90485162043096 380s number of edges = 10 380s average nonzero edge length = 0.290485162043096 380s shortest nonzero edge length = 0.150146561419501 380s Determine dx by default rule 380s Mean Nonzero Edge Length/ 30 = 0.00968283873476987 380s Total Network Length/ 100 = 0.0290485162043096 380s Min Nonzero Edge Length/3 = 0.0500488538065003 380s Minimum of the above = 0.00968283873476987 380s Fine spacing rule: dx = 0.00968283873476987 380s Rounded total number of lixels = 300 380s Adjusted dx = 0.00968283873476987 380s Applying full set of constraints 380s dt (determined by all constraints) = 1.27242139521974e-05 380s Number of iterations (determined from dt) = 98 380s Updated dt = 1.27551020408163e-05 380s alpha = 0.136043732774807 380s Final values: 380s Time step dt = 1.27551020408163e-05 380s Sample spacing dx = 0.00968283873476987 380s Number of iterations niter = 98 380s Number of states saved nsave = 1 380s Subdividing network ...Done. 380s New network: 380s Linear network with 299 vertices and 299 lines 380s Vertices are marked 380s Enclosing window: rectangle = [0, 1] x [0, 1] units 380s Constructing update matrix A ..Done. 380s alpha = 0.136043732774807 380s Building initial state ..Done. 380s finenet: 380s Linear network with 299 vertices and 299 lines 380s Vertices are marked 380s Enclosing window: rectangle = [0, 1] x [0, 1] units 380s lixelmap: 380s int [1:10] 105 106 12 13 88 89 115 116 240 241 380s lixelweight: 380s num [1:10] 68.672 34.604 0.571 102.704 7.503 ... 380s Processing 5 points ... 1, 2, 3, 4, 380s 5. 382s > 382s > reset.spatstat.options() 382s > 382s > #' 382s > #' lppmodels.R 382s > #' 382s > #' Tests of lppm and class support 382s > #' 382s > #' $Revision: 1.3 $ $Date: 2025/01/18 03:43:52 $ 382s > #' 382s > 382s > 382s > local({ 382s + if(ALWAYS) { 382s + fit0 <- lppm(spiders) 382s + fit1 <- lppm(spiders ~ x) 382s + summary(fit0) 382s + summary(fit1) 382s + pseudoR2(fit0) 382s + pseudoR2(fit1) 382s + } 382s + if(FULLTEST) { 382s + fit2 <- lppm(chicago ~ x+y) 382s + summary(fit2) 382s + pseudoR2(fit2) 382s + } 382s + if(ALWAYS) { 382s + X <- runiflpp(10, simplenet) 382s + Z <- distfun(runiflpp(10, simplenet)) 382s + fit3 <- lppm(X ~ Z) 382s + summary(fit3) 382s + pseudoR2(fit3) 382s + } 382s + 382s + Window(fit1) 382s + 382s + if(ALWAYS) a <- model.images(fit0) 382s + if(FULLTEST) { 382s + a <- model.images(fit1) 382s + a <- model.images(fit2) 382s + a <- model.images(fit3) 382s + } 382s + if(ALWAYS) 382s + b <- model.matrix(fit0) 382s + if(FULLTEST) { 382s + b <- model.matrix(fit1) 382s + b <- model.matrix(fit2) 382s + b <- model.matrix(fit3) 382s + } 382s + 382s + if(ALWAYS) 382s + is.multitype(fit0) 382s + if(FULLTEST) { 382s + is.multitype(fit1) 382s + is.multitype(fit2) 382s + is.multitype(fit3) 382s + } 382s + 382s + if(ALWAYS) fit0e <- emend(fit0) 382s + if(FULLTEST) { 382s + fit1e <- emend(fit1) 382s + fit2e <- emend(fit2) 382s + fit3e <- emend(fit3) 382s + } 382s + 382s + if(FULLTEST) { 382s + #' handling of lintess covariates 382s + df <- data.frame(seg=1:10, t0=0, t1=1, tile=rep(c("A", "B"), 5)) 382s + V <- lintess(simplenet, df) 382s + X <- runiflpp(20, simplenet) 382s + mod <- lppm(X ~ V) 382s + Lam <- predict(mod) 382s + } 382s + 382s + #' fundamental utilities: 382s + #' spatialCovariateEvidence (was: evalCovar) 382s + ycoord <- function(x,y) { y } 382s + if(ALWAYS) YS <- as.linim(ycoord, L=domain(spiders)) 382s + if(FULLTEST) YC <- as.linim(ycoord, L=domain(chicago)) 382s + 382s + if(ALWAYS) aT <- spatialCovariateEvidence(fit1, YS, interpolate=TRUE) 382s + if(FULLTEST) { 382s + aF <- spatialCovariateEvidence(fit1, YS, interpolate=FALSE) 382s + dT <- spatialCovariateEvidence(fit1, ycoord, interpolate=TRUE) 382s + dF <- spatialCovariateEvidence(fit1, ycoord, interpolate=FALSE) 382s + bT <- spatialCovariateEvidence(fit2, YC, interpolate=TRUE) 382s + bF <- spatialCovariateEvidence(fit2, YC, interpolate=FALSE) 382s + cT <- spatialCovariateEvidence(fit2, ycoord, interpolate=TRUE) 382s + cF <- spatialCovariateEvidence(fit2, ycoord, interpolate=FALSE) 382s + } 382s + 382s + }) 382s Point process model on linear network 382s Fitted to point pattern dataset ‘spiders’ 382s Internal fit: Point process model 382s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE) 382s Fitting method: maximum likelihood (Berman-Turner approximation) 382s Model was fitted using glm() 382s Algorithm converged 382s Call: 382s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE), 382s method = "mpl", forcefit = TRUE) 382s Edge correction: “border” 382s [border correction distance r = 0 ] 382s -------------------------------------------------------------------------------- 382s Quadrature scheme (Berman-Turner) = data + dummy + weights 382s 382s Data pattern: 382s Planar point pattern: 48 points 382s Average intensity 3.79e-05 points per square mm 382s Window: rectangle = [0, 1125] x [0, 1125] mm 382s Window area = 1265620 square mm 382s Unit of length: 1 mm 382s 382s Dummy quadrature points: 382s Equally spaced along each segment at spacing eps = 20.22 mm 382s Original parameter nd = 1000 382s 382s Planar point pattern: 1198 points 382s Average intensity 0.000947 points per square mm 382s Window: rectangle = [0, 1125] x [0, 1125] mm 382s Window area = 1265620 square mm 382s Unit of length: 1 mm 382s Quadrature weights: 382s Counting weights based on segment length 382s All weights: 382s range: [3.12, 20.2] total: 20200 382s Weights on data points: 382s range: [4.78, 10.1] total: 466 382s Weights on dummy points: 382s range: [3.12, 20.2] total: 19800 382s -------------------------------------------------------------------------------- 382s FITTED : 382s 382s Stationary Poisson process 382s 382s ---- Intensity: ---- 382s 382s 382s Uniform intensity: 382s [1] 0.002374034 382s 382s Estimate S.E. CI95.lo CI95.hi Ztest Zval 382s (Intercept) -6.043165 0.1443376 -6.326061 -5.760268 *** -41.86827 382s 382s ----------- gory details ----- 382s 382s Fitted regular parameters (theta): 382s (Intercept) 382s -6.043165 382s 382s Fitted exp(theta): 382s (Intercept) 382s 0.002374034 382s 382s Original data: spiders 382s Domain: Linear network with 156 vertices and 203 lines 382s Total length 20218.75 mm 382s Maximum vertex degree: 3 382s [Non-sparse matrix representation] 382s Network is connected 382s Diameter: 2575 mm 382s Bounding radius: 1306.25 mm 382s Numerical tolerance: 0.00625 mm 382s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm 382s Point process model on linear network 382s Fitted to point pattern dataset ‘spiders’ 382s Internal fit: Point process model 382s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE) 382s Fitting method: maximum likelihood (Berman-Turner approximation) 382s Model was fitted using glm() 382s Algorithm converged 382s Call: 382s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE), 382s trend = ~x, interaction = NULL, data = NULL, method = "mpl", 382s forcefit = TRUE) 382s Edge correction: “border” 382s [border correction distance r = 0 ] 382s -------------------------------------------------------------------------------- 382s Quadrature scheme (Berman-Turner) = data + dummy + weights 382s 382s Data pattern: 382s Planar point pattern: 48 points 382s Average intensity 3.79e-05 points per square mm 382s Window: rectangle = [0, 1125] x [0, 1125] mm 382s Window area = 1265620 square mm 382s Unit of length: 1 mm 382s 382s Dummy quadrature points: 382s Equally spaced along each segment at spacing eps = 20.22 mm 382s Original parameter nd = 1000 382s 382s Planar point pattern: 1198 points 382s Average intensity 0.000947 points per square mm 382s Window: rectangle = [0, 1125] x [0, 1125] mm 382s Window area = 1265620 square mm 382s Unit of length: 1 mm 382s Quadrature weights: 382s Counting weights based on segment length 382s All weights: 382s range: [3.12, 20.2] total: 20200 382s Weights on data points: 382s range: [4.78, 10.1] total: 466 382s Weights on dummy points: 382s range: [3.12, 20.2] total: 19800 382s -------------------------------------------------------------------------------- 382s FITTED : 382s 382s Nonstationary Poisson process 382s 382s ---- Intensity: ---- 382s 382s Log intensity: ~x 382s 382s Fitted trend coefficients: 382s (Intercept) x 382s -6.4845961867 0.0007423366 382s 382s Estimate S.E. CI95.lo CI95.hi Ztest 382s (Intercept) -6.4845961867 0.3179208001 -7.1077095048 -5.861482869 *** 382s x 0.0007423366 0.0004467129 -0.0001332047 0.001617878 382s Zval 382s (Intercept) -20.396892 382s x 1.661775 382s 382s ----------- gory details ----- 382s 382s Fitted regular parameters (theta): 382s (Intercept) x 382s -6.4845961867 0.0007423366 382s 382s Fitted exp(theta): 382s (Intercept) x 382s 0.001526777 1.000742612 382s 382s Original data: spiders 382s Domain: Linear network with 156 vertices and 203 lines 382s Total length 20218.75 mm 382s Maximum vertex degree: 3 382s [Non-sparse matrix representation] 382s Network is connected 382s Diameter: 2575 mm 382s Bounding radius: 1306.25 mm 382s Numerical tolerance: 0.00625 mm 382s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm 382s Point process model on linear network 382s Fitted to point pattern dataset ‘X’ 382s Internal fit: Point process model 382s Fitted to data: linequad(X, eps = NULL, nd = 1000, random = FALSE) 382s Fitting method: maximum likelihood (Berman-Turner approximation) 382s Model was fitted using glm() 382s Algorithm converged 382s Call: 382s ppm.quad(Q = linequad(X, eps = NULL, nd = 1000, random = FALSE), 382s trend = ~Z, interaction = NULL, data = NULL, method = "mpl", 382s forcefit = TRUE) 382s Edge correction: “border” 382s [border correction distance r = 0 ] 382s -------------------------------------------------------------------------------- 382s Quadrature scheme (Berman-Turner) = data + dummy + weights 382s 382s Data pattern: 382s Planar point pattern: 10 points 382s Average intensity 10 points per square unit 382s Window: rectangle = [0, 1] x [0, 1] units 382s Window area = 1 square unit 382s 382s Dummy quadrature points: 382s Equally spaced along each segment at spacing eps = 0.002905 units 382s Original parameter nd = 1000 382s 382s Planar point pattern: 1010 points 382s Average intensity 1010 points per square unit 382s Window: rectangle = [0, 1] x [0, 1] units 382s Window area = 1 square unit 382s Quadrature weights: 382s Counting weights based on segment length 382s All weights: 382s range: [0.000763, 0.0029] total: 2.9 382s Weights on data points: 382s range: [0.00145, 0.00145] total: 0.0145 382s Weights on dummy points: 382s range: [0.000763, 0.0029] total: 2.89 382s -------------------------------------------------------------------------------- 382s FITTED : 382s 382s Nonstationary Poisson process 382s 382s ---- Intensity: ---- 382s 382s Log intensity: ~Z 382s Model depends on external covariate ‘Z’ 382s Covariates provided: 382s Z: function(...) 382s 382s Fitted trend coefficients: 382s (Intercept) Z 382s 1.522839 -2.619590 382s 382s Estimate S.E. CI95.lo CI95.hi Ztest Zval 382s (Intercept) 1.522839 0.4787498 0.5845069 2.461172 ** 3.1808667 382s Z -2.619590 3.6387664 -9.7514410 4.512261 -0.7199115 382s 382s ----------- gory details ----- 382s 382s Fitted regular parameters (theta): 382s (Intercept) Z 382s 1.522839 -2.619590 382s 382s Fitted exp(theta): 382s (Intercept) Z 382s 4.58522581 0.07283273 382s 382s Original data: X 382s Domain: Linear network with 10 vertices and 10 lines 382s Total length 2.904852 units 382s Maximum vertex degree: 4 382s [Non-sparse matrix representation] 382s Network is connected 382s Diameter: 1.248943 units 382s Bounding radius: 0.7793609 units 382s Numerical tolerance: 0.0001501466 units 382s Enclosing window: rectangle = [0, 1] x [0, 1] units 382s > 382s > 382s BEGIN TEST testsMtoZ.R 382s 382s R version 4.4.3 (2025-02-28) -- "Trophy Case" 382s Copyright (C) 2025 The R Foundation for Statistical Computing 382s Platform: aarch64-unknown-linux-gnu 382s 382s R is free software and comes with ABSOLUTELY NO WARRANTY. 382s You are welcome to redistribute it under certain conditions. 382s Type 'license()' or 'licence()' for distribution details. 382s 382s R is a collaborative project with many contributors. 382s Type 'contributors()' for more information and 382s 'citation()' on how to cite R or R packages in publications. 382s 382s Type 'demo()' for some demos, 'help()' for on-line help, or 382s 'help.start()' for an HTML browser interface to help. 382s Type 'q()' to quit R. 382s 382s > #' 382s > #' Header for all (concatenated) test files 382s > #' 382s > #' Require spatstat.linnet 382s > #' Obtain environment variable controlling tests. 382s > #' 382s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 382s > 382s > require(spatstat.linnet) 382s Loading required package: spatstat.linnet 382s Loading required package: spatstat.data 383s Loading required package: spatstat.univar 383s spatstat.univar 3.1-1 383s Loading required package: spatstat.geom 383s spatstat.geom 3.3-5 383s Loading required package: spatstat.random 383s spatstat.random 3.3-2 383s Loading required package: spatstat.explore 383s Loading required package: nlme 383s spatstat.explore 3.3-4 383s Loading required package: spatstat.model 383s Loading required package: rpart 384s spatstat.model 3.3-4 384s spatstat.linnet 3.2-5 384s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 384s > ALWAYS <- TRUE 384s > cat(paste("--------- Executing", 384s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 384s + "test code -----------\n")) 384s --------- Executing **RESTRICTED** subset of test code ----------- 384s > ## 384s > ## tests/segments.R 384s > ## Tests of psp class and related code 384s > ## [SEE ALSO: tests/xysegment.R] 384s > ## 384s > ## $Revision: 1.33 $ $Date: 2022/05/22 08:39:47 $ 384s > 384s > 384s > 384s > 384s > if(FULLTEST) { 384s + local({ 384s + ## more tests of lppm code 384s + fit <- lppm(unmark(chicago) ~ polynom(x,y,2)) 384s + Z <- predict(fit) 384s + }) 384s + } 384s > 384s > # 384s > # tests/undoc.R 384s > # 384s > # $Revision: 1.16 $ $Date: 2020/11/02 07:06:49 $ 384s > # 384s > # Test undocumented hacks, experimental code, etc 384s > 384s > 384s > if(FULLTEST) { 384s + local({ 384s + ## linim helper functions 384s + df <- pointsAlongNetwork(simplenet, 0.2) 384s + }) 384s + } 384s > 384s > ## 384s > ## tests/updateppm.R 384s > ## 384s > ## Check validity of update.ppm 384s > ## 384s > ## $Revision: 1.8 $ $Date: 2022/10/23 01:19:19 $ 384s > 384s > local({ 384s + 384s + if(ALWAYS) { 384s + ## test update.lppm 384s + X <- runiflpp(20, simplenet) 384s + fit0 <- lppm(X ~ 1) 384s + fit1 <- update(fit0, ~ x) 384s + anova(fit0, fit1, test="LR") 384s + cat("update.lppm(fit, ~trend) is OK\n") 384s + fit2 <- update(fit0, . ~ x) 384s + anova(fit0, fit2, test="LR") 384s + cat("update.lppm(fit, . ~ trend) is OK\n") 384s + } 384s + }) 384s update.lppm(fit, ~trend) is OK 384s update.lppm(fit, . ~ trend) is OK 384s > ## 384s > ## tests/xysegment.R 384s > ## [SEE ALSO tests/segments.R] 384s > ## 384s > ## Test weird problems and boundary cases for line segment code 384s > ## 384s > ## $Version$ $Date: 2022/10/23 01:21:09 $ 384s > ## 384s > 384s > 384s > if(FULLTEST) local({ S <- as.psp(simplenet) }) 384s > 384s > 384s autopkgtest [16:04:09]: test run-unit-test: -----------------------] 385s autopkgtest [16:04:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 385s run-unit-test PASS 385s autopkgtest [16:04:10]: test pkg-r-autopkgtest: preparing testbed 542s autopkgtest [16:06:47]: testbed dpkg architecture: arm64 542s autopkgtest [16:06:47]: testbed apt version: 2.9.33 542s autopkgtest [16:06:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 543s autopkgtest [16:06:48]: testbed release detected to be: plucky 544s autopkgtest [16:06:49]: updating testbed package index (apt update) 544s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 544s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 544s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 545s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 545s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 545s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 545s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 545s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 545s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 545s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 545s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 546s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 546s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 546s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 546s Fetched 1078 kB in 2s (570 kB/s) 547s Reading package lists... 548s + lsb_release --codename --short 548s + RELEASE=plucky 548s + cat 548s + [ plucky != trusty ] 548s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 550s Calculating upgrade... 550s Calculating upgrade... 550s The following packages will be upgraded: 550s pinentry-curses python3-jinja2 strace 550s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 550s Need to get 647 kB of archives. 550s After this operation, 11.3 kB of additional disk space will be used. 550s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 551s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 551s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 552s Fetched 647 kB in 1s (470 kB/s) 552s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 552s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 552s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 552s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 552s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 552s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 552s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 552s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 552s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 553s Setting up strace (6.13+ds-1ubuntu1) ... 553s Processing triggers for man-db (2.13.0-1) ... 553s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 553s + /usr/lib/apt/apt-helper analyze-pattern ?true 553s + uname -r 553s + sed s/\./\\./g 553s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 553s + apt list ?obsolete 553s + tail -n+2 553s + cut -d/ -f1 553s + grep -v ^linux-.*6\.14\.0-10-generic.* 554s + obsolete_pkgs=linux-headers-6.11.0-8-generic 554s linux-headers-6.11.0-8 554s linux-image-6.11.0-8-generic 554s linux-modules-6.11.0-8-generic 554s linux-tools-6.11.0-8-generic 554s linux-tools-6.11.0-8 554s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-genericReading package lists... 554s Building dependency tree... linux-tools-6.11.0-8 554s 554s Reading state information... 555s Solving dependencies... 555s The following packages will be REMOVED: 555s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 555s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 555s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 555s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 556s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 556s After this operation, 267 MB disk space will be freed. 556s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 556s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 556s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 556s Removing libpython3.12t64:arm64 (3.12.9-1) ... 556s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 556s Removing libnsl2:arm64 (1.3.0-3build3) ... 556s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 556s Removing libunwind8:arm64 (1.6.2-3.1) ... 556s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 557s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 558s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 559s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 559s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 559s /etc/kernel/postrm.d/initramfs-tools: 559s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 559s /etc/kernel/postrm.d/zz-flash-kernel: 559s flash-kernel: Kernel 6.11.0-8-generic has been removed. 559s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 559s /etc/kernel/postrm.d/zz-update-grub: 559s Sourcing file `/etc/default/grub' 559s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 559s Generating grub configuration file ... 559s Found linux image: /boot/vmlinuz-6.14.0-10-generic 559s Found initrd image: /boot/initrd.img-6.14.0-10-generic 560s Warning: os-prober will not be executed to detect other bootable partitions. 560s Systems on them will not be added to the GRUB boot configuration. 560s Check GRUB_DISABLE_OS_PROBER documentation entry. 560s Adding boot menu entry for UEFI Firmware Settings ... 560s done 560s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 560s Processing triggers for libc-bin (2.41-1ubuntu1) ... 560s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 560s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 561s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 561s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 561s + grep -q trusty /etc/lsb-release 561s + [ ! -d /usr/share/doc/unattended-upgrades ] 561s + [ ! -d /usr/share/doc/lxd ] 561s + [ ! -d /usr/share/doc/lxd-client ] 561s + [ ! -d /usr/share/doc/snapd ] 561s + type iptables 561s + cat 561s + chmod 755 /etc/rc.local 561s + . /etc/rc.local 561s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 561s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 561s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 561s + uname -m 561s + [ aarch64 = ppc64le ] 561s + [ -d /run/systemd/system ] 561s + systemd-detect-virt --quiet --vm 561s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 561s + cat 561s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 561s + echo COMPRESS=lz4 561s autopkgtest [16:07:06]: upgrading testbed (apt dist-upgrade and autopurge) 561s Reading package lists... 561s Building dependency tree... 561s Reading state information... 562s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 562s Starting 2 pkgProblemResolver with broken count: 0 562s Done 563s Entering ResolveByKeep 564s 564s Calculating upgrade... 564s The following packages will be upgraded: 564s libc-bin libc-dev-bin libc6 libc6-dev locales 564s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 564s Need to get 9530 kB of archives. 564s After this operation, 0 B of additional disk space will be used. 564s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 567s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 567s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 570s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 571s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 576s Preconfiguring packages ... 577s Fetched 9530 kB in 12s (806 kB/s) 577s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 577s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 577s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 577s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 577s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 577s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 577s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 578s Setting up libc6:arm64 (2.41-1ubuntu2) ... 578s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 578s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 578s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 578s Setting up libc-bin (2.41-1ubuntu2) ... 578s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 578s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 578s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 579s Setting up locales (2.41-1ubuntu2) ... 580s Generating locales (this might take a while)... 587s en_US.UTF-8... done 587s Generation complete. 587s Setting up libc-dev-bin (2.41-1ubuntu2) ... 587s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 587s Processing triggers for man-db (2.13.0-1) ... 588s Processing triggers for systemd (257.3-1ubuntu3) ... 589s Reading package lists... 590s Building dependency tree... 590s Reading state information... 590s Starting pkgProblemResolver with broken count: 0 591s Starting 2 pkgProblemResolver with broken count: 0 591s Done 591s Solving dependencies... 592s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 593s autopkgtest [16:07:38]: rebooting testbed after setup commands that affected boot 620s Reading package lists... 621s Building dependency tree... 621s Reading state information... 621s Starting pkgProblemResolver with broken count: 0 621s Starting 2 pkgProblemResolver with broken count: 0 621s Done 622s The following NEW packages will be installed: 622s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 622s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 622s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 622s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 622s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 622s libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 622s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 622s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 622s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 622s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 622s liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 622s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 622s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 622s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 622s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 622s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 622s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-cran-abind 622s r-cran-deldir r-cran-goftest r-cran-lattice r-cran-matrix r-cran-mgcv 622s r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat 622s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 622s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 622s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 622s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip zlib1g-dev 622s 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. 622s Need to get 174 MB of archives. 622s After this operation, 467 MB of additional disk space will be used. 622s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 623s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 624s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 642s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 642s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 642s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 642s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 642s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 643s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 643s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 648s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 650s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 655s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 657s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 659s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 663s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 709s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 710s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 710s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 710s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 716s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 747s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 747s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 747s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 747s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 747s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 747s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 749s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 752s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 752s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 752s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 753s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 755s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 757s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 800s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 800s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 800s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 800s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 800s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 800s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 801s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 801s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 801s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 801s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 801s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 801s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 803s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 803s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 803s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 803s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 803s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 805s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 805s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 805s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 834s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 834s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 834s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 834s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 834s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 834s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 838s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 846s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 846s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 847s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 847s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 847s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 847s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 847s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 847s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 847s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 847s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 848s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 848s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 848s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 850s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 850s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 851s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 852s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 852s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 852s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 852s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 853s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 853s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 853s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 853s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 853s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 853s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 854s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 855s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 855s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 855s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 855s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 889s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 890s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 890s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 890s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 890s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 890s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 890s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 890s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 890s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-goftest arm64 1.2-3-1 [60.2 kB] 891s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 892s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 897s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 900s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 903s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-polyclip arm64 1.10-7-1 [113 kB] 903s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 912s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rpart arm64 4.1.24-1 [665 kB] 913s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.utils arm64 3.1-2-1 [381 kB] 913s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 918s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.univar arm64 3.1-1-1build1 [308 kB] 918s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.geom arm64 3.3-5-1 [3929 kB] 923s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.random arm64 3.3-2-1 [1159 kB] 924s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tensor all 1.5-4 [15.7 kB] 924s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.sparse arm64 3.1-0-1 [218 kB] 924s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.explore arm64 3.3-4-1 [3272 kB] 928s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.model arm64 3.3-4-1 [3398 kB] 932s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.linnet arm64 3.2-5-1 [1507 kB] 933s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat arm64 3.3-1-1 [4120 kB] 939s Preconfiguring packages ... 939s Fetched 174 MB in 5min 16s (549 kB/s) 939s Selecting previously unselected package libisl23:arm64. 939s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 939s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 939s Unpacking libisl23:arm64 (0.27-1) ... 939s Selecting previously unselected package libmpc3:arm64. 939s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 939s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 939s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 939s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 939s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 940s Selecting previously unselected package cpp-14. 940s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 940s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 940s Selecting previously unselected package cpp-aarch64-linux-gnu. 940s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 940s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 940s Selecting previously unselected package cpp. 940s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 940s Unpacking cpp (4:14.2.0-1ubuntu1) ... 940s Selecting previously unselected package libcc1-0:arm64. 940s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 940s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 940s Selecting previously unselected package libgomp1:arm64. 940s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 940s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 940s Selecting previously unselected package libitm1:arm64. 940s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 940s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 940s Selecting previously unselected package libasan8:arm64. 940s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 940s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 940s Selecting previously unselected package liblsan0:arm64. 940s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 940s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 940s Selecting previously unselected package libtsan2:arm64. 940s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 940s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 941s Selecting previously unselected package libubsan1:arm64. 941s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 941s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 941s Selecting previously unselected package libhwasan0:arm64. 941s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 941s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 941s Selecting previously unselected package libgcc-14-dev:arm64. 941s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 941s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 941s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 941s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package gcc-14. 941s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 942s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 942s Selecting previously unselected package gcc-aarch64-linux-gnu. 942s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 942s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 942s Selecting previously unselected package gcc. 942s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 942s Unpacking gcc (4:14.2.0-1ubuntu1) ... 942s Selecting previously unselected package libstdc++-14-dev:arm64. 942s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 942s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 942s Selecting previously unselected package g++-14-aarch64-linux-gnu. 942s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 942s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 942s Selecting previously unselected package g++-14. 942s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 942s Unpacking g++-14 (14.2.0-17ubuntu3) ... 942s Selecting previously unselected package g++-aarch64-linux-gnu. 942s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 942s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 942s Selecting previously unselected package g++. 942s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 942s Unpacking g++ (4:14.2.0-1ubuntu1) ... 942s Selecting previously unselected package build-essential. 943s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 943s Unpacking build-essential (12.10ubuntu1) ... 943s Selecting previously unselected package dctrl-tools. 943s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 943s Unpacking dctrl-tools (2.24-3build3) ... 943s Selecting previously unselected package fonts-dejavu-mono. 943s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 943s Unpacking fonts-dejavu-mono (2.37-8) ... 943s Selecting previously unselected package fonts-dejavu-core. 943s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 943s Unpacking fonts-dejavu-core (2.37-8) ... 943s Selecting previously unselected package fontconfig-config. 943s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 944s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 944s Selecting previously unselected package libfontconfig1:arm64. 944s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 944s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 944s Selecting previously unselected package fontconfig. 944s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 944s Unpacking fontconfig (2.15.0-2ubuntu1) ... 944s Selecting previously unselected package libgfortran5:arm64. 944s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 944s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 944s Selecting previously unselected package libgfortran-14-dev:arm64. 944s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 944s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 944s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 944s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 944s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 944s Selecting previously unselected package gfortran-14. 944s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 944s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 944s Selecting previously unselected package gfortran-aarch64-linux-gnu. 944s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 944s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 944s Selecting previously unselected package gfortran. 944s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 944s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 944s Selecting previously unselected package icu-devtools. 944s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ... 944s Unpacking icu-devtools (76.1-1ubuntu2) ... 945s Selecting previously unselected package libblas3:arm64. 945s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ... 945s Unpacking libblas3:arm64 (3.12.1-2) ... 945s Selecting previously unselected package libblas-dev:arm64. 945s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ... 945s Unpacking libblas-dev:arm64 (3.12.1-2) ... 945s Selecting previously unselected package libbz2-dev:arm64. 945s Preparing to unpack .../040-libbz2-dev_1.0.8-6_arm64.deb ... 945s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 945s Selecting previously unselected package libpixman-1-0:arm64. 945s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_arm64.deb ... 945s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 945s Selecting previously unselected package libxcb-render0:arm64. 945s Preparing to unpack .../042-libxcb-render0_1.17.0-2_arm64.deb ... 945s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 945s Selecting previously unselected package libxcb-shm0:arm64. 945s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_arm64.deb ... 945s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 945s Selecting previously unselected package libxrender1:arm64. 945s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 945s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 945s Selecting previously unselected package libcairo2:arm64. 945s Preparing to unpack .../045-libcairo2_1.18.2-2_arm64.deb ... 945s Unpacking libcairo2:arm64 (1.18.2-2) ... 945s Selecting previously unselected package libdatrie1:arm64. 945s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_arm64.deb ... 945s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 945s Selecting previously unselected package libdeflate0:arm64. 945s Preparing to unpack .../047-libdeflate0_1.23-1_arm64.deb ... 945s Unpacking libdeflate0:arm64 (1.23-1) ... 945s Selecting previously unselected package libdeflate-dev:arm64. 945s Preparing to unpack .../048-libdeflate-dev_1.23-1_arm64.deb ... 945s Unpacking libdeflate-dev:arm64 (1.23-1) ... 945s Selecting previously unselected package libgraphite2-3:arm64. 945s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 945s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 945s Selecting previously unselected package libharfbuzz0b:arm64. 945s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_arm64.deb ... 945s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 945s Selecting previously unselected package x11-common. 945s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu3_all.deb ... 945s Unpacking x11-common (1:7.7+23ubuntu3) ... 945s Selecting previously unselected package libice6:arm64. 945s Preparing to unpack .../052-libice6_2%3a1.1.1-1_arm64.deb ... 945s Unpacking libice6:arm64 (2:1.1.1-1) ... 945s Selecting previously unselected package libicu-dev:arm64. 945s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_arm64.deb ... 945s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 946s Selecting previously unselected package libjpeg-turbo8:arm64. 946s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 946s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 946s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 946s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 946s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 946s Selecting previously unselected package libjpeg8:arm64. 946s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_arm64.deb ... 946s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 946s Selecting previously unselected package libjpeg8-dev:arm64. 946s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 946s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 946s Selecting previously unselected package libjpeg-dev:arm64. 946s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 946s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 946s Selecting previously unselected package liblapack3:arm64. 946s Preparing to unpack .../059-liblapack3_3.12.1-2_arm64.deb ... 946s Unpacking liblapack3:arm64 (3.12.1-2) ... 946s Selecting previously unselected package liblapack-dev:arm64. 946s Preparing to unpack .../060-liblapack-dev_3.12.1-2_arm64.deb ... 946s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 947s Selecting previously unselected package liblerc4:arm64. 947s Preparing to unpack .../061-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 947s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 947s Selecting previously unselected package libncurses-dev:arm64. 947s Preparing to unpack .../062-libncurses-dev_6.5+20250216-2_arm64.deb ... 947s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 947s Selecting previously unselected package libthai-data. 947s Preparing to unpack .../063-libthai-data_0.1.29-2build1_all.deb ... 947s Unpacking libthai-data (0.1.29-2build1) ... 947s Selecting previously unselected package libthai0:arm64. 947s Preparing to unpack .../064-libthai0_0.1.29-2build1_arm64.deb ... 947s Unpacking libthai0:arm64 (0.1.29-2build1) ... 947s Selecting previously unselected package libpango-1.0-0:arm64. 947s Preparing to unpack .../065-libpango-1.0-0_1.56.2-1_arm64.deb ... 947s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 947s Selecting previously unselected package libpangoft2-1.0-0:arm64. 947s Preparing to unpack .../066-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 947s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 947s Selecting previously unselected package libpangocairo-1.0-0:arm64. 947s Preparing to unpack .../067-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 947s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 947s Selecting previously unselected package libpaper2:arm64. 947s Preparing to unpack .../068-libpaper2_2.2.5-0.3_arm64.deb ... 947s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 947s Selecting previously unselected package libpaper-utils. 947s Preparing to unpack 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(1.8.1-4) ... 947s Selecting previously unselected package zlib1g-dev:arm64. 947s Preparing to unpack .../075-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 947s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 948s Selecting previously unselected package libpng-dev:arm64. 948s Preparing to unpack .../076-libpng-dev_1.6.47-1_arm64.deb ... 948s Unpacking libpng-dev:arm64 (1.6.47-1) ... 948s Selecting previously unselected package libreadline-dev:arm64. 948s Preparing to unpack .../077-libreadline-dev_8.2-6_arm64.deb ... 948s Unpacking libreadline-dev:arm64 (8.2-6) ... 948s Selecting previously unselected package libsharpyuv0:arm64. 948s Preparing to unpack .../078-libsharpyuv0_1.5.0-0.1_arm64.deb ... 948s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 948s Selecting previously unselected package libsm6:arm64. 948s Preparing to unpack .../079-libsm6_2%3a1.2.4-1_arm64.deb ... 948s Unpacking libsm6:arm64 (2:1.2.4-1) ... 948s Selecting previously unselected package libtcl8.6:arm64. 948s Preparing to unpack .../080-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 948s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 948s Selecting previously unselected package libjbig0:arm64. 948s Preparing to unpack .../081-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 948s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 948s Selecting previously unselected package libwebp7:arm64. 948s Preparing to unpack .../082-libwebp7_1.5.0-0.1_arm64.deb ... 948s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 948s Selecting previously unselected package libtiff6:arm64. 948s Preparing to unpack .../083-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 948s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 948s Selecting previously unselected package libxft2:arm64. 948s Preparing to unpack .../084-libxft2_2.3.6-1build1_arm64.deb ... 948s Unpacking libxft2:arm64 (2.3.6-1build1) ... 948s Selecting previously unselected package libxss1:arm64. 948s Preparing to unpack .../085-libxss1_1%3a1.2.3-1build3_arm64.deb ... 948s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 948s Selecting previously unselected package libtk8.6:arm64. 948s Preparing to unpack .../086-libtk8.6_8.6.16-1_arm64.deb ... 948s Unpacking libtk8.6:arm64 (8.6.16-1) ... 948s Selecting previously unselected package libxt6t64:arm64. 948s Preparing to unpack .../087-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 948s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 948s Selecting previously unselected package zip. 948s Preparing to unpack .../088-zip_3.0-14ubuntu2_arm64.deb ... 948s Unpacking zip (3.0-14ubuntu2) ... 948s Selecting previously unselected package unzip. 948s Preparing to unpack .../089-unzip_6.0-28ubuntu6_arm64.deb ... 948s Unpacking unzip (6.0-28ubuntu6) ... 948s Selecting previously unselected package xdg-utils. 949s Preparing to unpack .../090-xdg-utils_1.2.1-2ubuntu1_all.deb ... 949s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 949s Selecting previously unselected package r-base-core. 949s Preparing to unpack .../091-r-base-core_4.4.3-1_arm64.deb ... 949s Unpacking r-base-core (4.4.3-1) ... 949s Selecting previously unselected package liblzma-dev:arm64. 949s Preparing to unpack .../092-liblzma-dev_5.6.4-1_arm64.deb ... 949s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 949s Selecting previously unselected package pkgconf-bin. 949s Preparing to unpack .../093-pkgconf-bin_1.8.1-4_arm64.deb ... 949s Unpacking pkgconf-bin (1.8.1-4) ... 949s Selecting previously unselected package pkgconf:arm64. 949s Preparing to unpack .../094-pkgconf_1.8.1-4_arm64.deb ... 949s Unpacking pkgconf:arm64 (1.8.1-4) ... 949s Selecting previously unselected package libtirpc-dev:arm64. 949s Preparing to unpack .../095-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 949s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 949s Selecting previously unselected package r-base-dev. 949s Preparing to unpack .../096-r-base-dev_4.4.3-1_all.deb ... 949s Unpacking r-base-dev (4.4.3-1) ... 949s Selecting previously unselected package pkg-r-autopkgtest. 949s Preparing to unpack .../097-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 949s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 949s Selecting previously unselected package r-cran-abind. 950s Preparing to unpack .../098-r-cran-abind_1.4-8-1_all.deb ... 950s Unpacking r-cran-abind (1.4-8-1) ... 950s Selecting previously unselected package r-cran-deldir. 950s Preparing to unpack .../099-r-cran-deldir_2.0-4-1build1_arm64.deb ... 950s Unpacking r-cran-deldir (2.0-4-1build1) ... 950s Selecting previously unselected package r-cran-goftest. 950s Preparing to unpack .../100-r-cran-goftest_1.2-3-1_arm64.deb ... 950s Unpacking r-cran-goftest (1.2-3-1) ... 950s Selecting previously unselected package r-cran-lattice. 950s Preparing to unpack .../101-r-cran-lattice_0.22-6-1_arm64.deb ... 950s Unpacking r-cran-lattice (0.22-6-1) ... 950s Selecting previously unselected package r-cran-matrix. 950s Preparing to unpack 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r-cran-tensor. 951s Preparing to unpack .../113-r-cran-tensor_1.5-4_all.deb ... 951s Unpacking r-cran-tensor (1.5-4) ... 951s Selecting previously unselected package r-cran-spatstat.sparse. 951s Preparing to unpack .../114-r-cran-spatstat.sparse_3.1-0-1_arm64.deb ... 951s Unpacking r-cran-spatstat.sparse (3.1-0-1) ... 951s Selecting previously unselected package r-cran-spatstat.explore. 951s Preparing to unpack .../115-r-cran-spatstat.explore_3.3-4-1_arm64.deb ... 951s Unpacking r-cran-spatstat.explore (3.3-4-1) ... 951s Selecting previously unselected package r-cran-spatstat.model. 951s Preparing to unpack .../116-r-cran-spatstat.model_3.3-4-1_arm64.deb ... 951s Unpacking r-cran-spatstat.model (3.3-4-1) ... 951s Selecting previously unselected package r-cran-spatstat.linnet. 951s Preparing to unpack .../117-r-cran-spatstat.linnet_3.2-5-1_arm64.deb ... 951s Unpacking r-cran-spatstat.linnet (3.2-5-1) ... 951s Selecting previously unselected package r-cran-spatstat. 951s Preparing to unpack .../118-r-cran-spatstat_3.3-1-1_arm64.deb ... 951s Unpacking r-cran-spatstat (3.3-1-1) ... 951s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 951s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 951s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 951s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 951s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 951s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 951s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 951s Setting up libxcb-render0:arm64 (1.17.0-2) ... 951s Setting up unzip (6.0-28ubuntu6) ... 951s Setting up x11-common (1:7.7+23ubuntu3) ... 952s Setting up libdeflate0:arm64 (1.23-1) ... 952s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 952s Setting up libreadline-dev:arm64 (8.2-6) ... 952s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 952s Setting up libpcre2-16-0:arm64 (10.45-1) ... 952s Setting up zip (3.0-14ubuntu2) ... 952s Setting up libpcre2-32-0:arm64 (10.45-1) ... 952s Setting up libblas3:arm64 (3.12.1-2) ... 952s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 952s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 952s Setting up libpkgconf3:arm64 (1.8.1-4) ... 952s Setting up fonts-dejavu-mono (2.37-8) ... 952s Setting up libmpc3:arm64 (1.3.1-1build2) ... 952s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 952s Setting up icu-devtools (76.1-1ubuntu2) ... 952s Setting up fonts-dejavu-core (2.37-8) ... 952s Setting up pkgconf-bin (1.8.1-4) ... 952s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 952s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libwebp7:arm64 (1.5.0-0.1) ... 952s Setting up liblzma-dev:arm64 (5.6.4-1) ... 952s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 952s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 952s Setting up libpcre2-posix3:arm64 (10.45-1) ... 952s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 952s Setting up libthai-data (0.1.29-2build1) ... 952s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 952s Setting up libpaper2:arm64 (2.2.5-0.3) ... 952s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libisl23:arm64 (0.27-1) ... 952s Setting up libdeflate-dev:arm64 (1.23-1) ... 952s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 952s Setting up xdg-utils (1.2.1-2ubuntu1) ... 952s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 952s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 952s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libblas-dev:arm64 (3.12.1-2) ... 952s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 952s Setting up dctrl-tools (2.24-3build3) ... 952s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 952s Setting up libbz2-dev:arm64 (1.0.8-6) ... 952s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 952s Setting up libice6:arm64 (2:1.1.1-1) ... 952s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 952s Setting up liblapack3:arm64 (3.12.1-2) ... 952s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 952s Setting up libpcre2-dev:arm64 (10.45-1) ... 952s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 952s Setting up libpng-dev:arm64 (1.6.47-1) ... 952s Setting up libpaper-utils (2.2.5-0.3) ... 952s Setting up pkgconf:arm64 (1.8.1-4) ... 952s Setting up libthai0:arm64 (0.1.29-2build1) ... 952s Setting up liblapack-dev:arm64 (3.12.1-2) ... 952s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 952s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 952s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 952s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 952s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 952s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 952s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 952s Setting up libsm6:arm64 (2:1.2.4-1) ... 952s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 952s Setting up fontconfig (2.15.0-2ubuntu1) ... 954s Regenerating fonts cache... done. 954s Setting up libxft2:arm64 (2.3.6-1build1) ... 954s Setting up libtk8.6:arm64 (8.6.16-1) ... 954s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 954s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 954s Setting up libcairo2:arm64 (1.18.2-2) ... 954s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 954s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 954s Setting up cpp-14 (14.2.0-17ubuntu3) ... 954s Setting up cpp (4:14.2.0-1ubuntu1) ... 954s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 954s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 954s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 954s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 954s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 954s Setting up gcc-14 (14.2.0-17ubuntu3) ... 954s Setting up r-base-core (4.4.3-1) ... 955s Creating config file /etc/R/Renviron with new version 955s Setting up r-cran-lattice (0.22-6-1) ... 955s Setting up r-cran-nlme (3.1.167-1) ... 955s Setting up r-cran-spatstat.utils (3.1-2-1) ... 955s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 955s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 955s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 955s Setting up r-cran-tensor (1.5-4) ... 955s Setting up g++-14 (14.2.0-17ubuntu3) ... 955s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 955s Setting up r-cran-spatstat.univar (3.1-1-1build1) ... 955s Setting up r-cran-abind (1.4-8-1) ... 955s Setting up r-cran-polyclip (1.10-7-1) ... 955s Setting up gcc (4:14.2.0-1ubuntu1) ... 955s Setting up r-cran-deldir (2.0-4-1build1) ... 955s Setting up r-cran-goftest (1.2-3-1) ... 955s Setting up r-cran-matrix (1.7-3-1) ... 955s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 955s Setting up r-cran-mgcv (1.9-1-1) ... 955s Setting up g++ (4:14.2.0-1ubuntu1) ... 955s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 955s Setting up build-essential (12.10ubuntu1) ... 955s Setting up r-cran-survival (3.8-3-1) ... 955s Setting up gfortran (4:14.2.0-1ubuntu1) ... 955s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 955s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 955s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 955s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 955s Setting up r-cran-spatstat.data (3.1-4-1) ... 955s Setting up r-cran-spatstat.geom (3.3-5-1) ... 955s Setting up r-base-dev (4.4.3-1) ... 955s Setting up r-cran-rpart (4.1.24-1) ... 955s Setting up r-cran-spatstat.random (3.3-2-1) ... 955s Setting up r-cran-spatstat.explore (3.3-4-1) ... 955s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 955s Setting up r-cran-spatstat.model (3.3-4-1) ... 955s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 955s Setting up r-cran-spatstat (3.3-1-1) ... 955s Processing triggers for install-info (7.1.1-1) ... 955s Processing triggers for libc-bin (2.41-1ubuntu2) ... 955s Processing triggers for man-db (2.13.0-1) ... 960s autopkgtest [16:13:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 960s autopkgtest [16:13:45]: test pkg-r-autopkgtest: [----------------------- 961s Test: Try to load the R library spatstat.linnet 961s 961s R version 4.4.3 (2025-02-28) -- "Trophy Case" 961s Copyright (C) 2025 The R Foundation for Statistical Computing 961s Platform: aarch64-unknown-linux-gnu 961s 961s R is free software and comes with ABSOLUTELY NO WARRANTY. 961s You are welcome to redistribute it under certain conditions. 961s Type 'license()' or 'licence()' for distribution details. 961s 961s R is a collaborative project with many contributors. 961s Type 'contributors()' for more information and 961s 'citation()' on how to cite R or R packages in publications. 961s 961s Type 'demo()' for some demos, 'help()' for on-line help, or 961s 'help.start()' for an HTML browser interface to help. 961s Type 'q()' to quit R. 961s 961s > library('spatstat.linnet') 961s Loading required package: spatstat.data 962s Loading required package: spatstat.univar 962s spatstat.univar 3.1-1 962s Loading required package: spatstat.geom 962s spatstat.geom 3.3-5 962s Loading required package: spatstat.random 962s spatstat.random 3.3-2 962s Loading required package: spatstat.explore 962s Loading required package: nlme 962s spatstat.explore 3.3-4 962s Loading required package: spatstat.model 962s Loading required package: rpart 962s spatstat.model 3.3-4 963s spatstat.linnet 3.2-5 963s > 963s > 963s Other tests are currently unsupported! 963s They will be progressively added. 963s autopkgtest [16:13:48]: test pkg-r-autopkgtest: -----------------------] 963s pkg-r-autopkgtest PASS 963s autopkgtest [16:13:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 964s autopkgtest [16:13:49]: @@@@@@@@@@@@@@@@@@@@ summary 964s run-unit-test PASS 964s pkg-r-autopkgtest PASS 982s nova [W] Using flock in prodstack6-arm64 982s Creating nova instance adt-plucky-arm64-r-cran-spatstat.linnet-20250315-155744-juju-7f2275-prod-proposed-migration-environment-15-a27a0f9d-2d30-4dbb-b132-c3dc77ccec32 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 982s nova [W] Timed out waiting for 05d535aa-9908-4425-92ab-eb36601d2700 to get deleted. 982s nova [W] Using flock in prodstack6-arm64 982s Creating nova instance adt-plucky-arm64-r-cran-spatstat.linnet-20250315-155744-juju-7f2275-prod-proposed-migration-environment-15-a27a0f9d-2d30-4dbb-b132-c3dc77ccec32 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 982s nova [W] Timed out waiting for 2d962292-7047-453e-a652-d28e253cc716 to get deleted.