0s autopkgtest [15:56:46]: starting date and time: 2025-03-15 15:56:46+0000 0s autopkgtest [15:56:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:56:46]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ea2ppz56/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-23.secgroup --name adt-plucky-arm64-r-cran-spam-20250315-155645-juju-7f2275-prod-proposed-migration-environment-20-43e01230-de53-4615-8011-43bb007e324a --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 123s autopkgtest [15:58:49]: testbed dpkg architecture: arm64 123s autopkgtest [15:58:49]: testbed apt version: 2.9.33 124s autopkgtest [15:58:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 124s autopkgtest [15:58:50]: testbed release detected to be: None 125s autopkgtest [15:58:51]: updating testbed package index (apt update) 125s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 126s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 126s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 126s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 126s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 126s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 126s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 126s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 127s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 127s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 127s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 127s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 127s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 127s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 127s Fetched 1078 kB in 2s (592 kB/s) 128s Reading package lists... 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s Calculating upgrade... 130s Calculating upgrade... 131s The following packages will be upgraded: 131s pinentry-curses python3-jinja2 strace 131s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Need to get 647 kB of archives. 131s After this operation, 11.3 kB of additional disk space will be used. 131s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 131s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 131s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 132s Fetched 647 kB in 1s (674 kB/s) 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 132s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 132s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 133s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 133s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 133s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 133s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 133s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 133s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 133s Setting up strace (6.13+ds-1ubuntu1) ... 133s Processing triggers for man-db (2.13.0-1) ... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Solving dependencies... 135s The following packages will be REMOVED: 135s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 135s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 135s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 135s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 135s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 135s After this operation, 267 MB disk space will be freed. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 135s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 135s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 135s Removing libpython3.12t64:arm64 (3.12.9-1) ... 135s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 136s Removing libnsl2:arm64 (1.3.0-3build3) ... 136s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 136s Removing libunwind8:arm64 (1.6.2-3.1) ... 136s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 136s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 138s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 138s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 138s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 138s /etc/kernel/postrm.d/initramfs-tools: 138s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 138s /etc/kernel/postrm.d/zz-flash-kernel: 138s flash-kernel: Kernel 6.11.0-8-generic has been removed. 138s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 139s /etc/kernel/postrm.d/zz-update-grub: 139s Sourcing file `/etc/default/grub' 139s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 139s Generating grub configuration file ... 139s Found linux image: /boot/vmlinuz-6.14.0-10-generic 139s Found initrd image: /boot/initrd.img-6.14.0-10-generic 139s Warning: os-prober will not be executed to detect other bootable partitions. 139s Systems on them will not be added to the GRUB boot configuration. 139s Check GRUB_DISABLE_OS_PROBER documentation entry. 139s Adding boot menu entry for UEFI Firmware Settings ... 139s done 140s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 140s Processing triggers for libc-bin (2.41-1ubuntu1) ... 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 140s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 140s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 140s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 140s autopkgtest [15:59:06]: upgrading testbed (apt dist-upgrade and autopurge) 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 141s Starting 2 pkgProblemResolver with broken count: 0 141s Done 142s Entering ResolveByKeep 142s 143s Calculating upgrade... 143s The following packages will be upgraded: 143s libc-bin libc-dev-bin libc6 libc6-dev locales 143s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 9530 kB of archives. 143s After this operation, 0 B of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 145s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 145s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 149s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 149s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 154s Preconfiguring packages ... 154s Fetched 9530 kB in 11s (898 kB/s) 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 154s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 154s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 154s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 154s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 154s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 155s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up libc6:arm64 (2.41-1ubuntu2) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 155s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 155s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up libc-bin (2.41-1ubuntu2) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 155s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 155s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up locales (2.41-1ubuntu2) ... 156s Generating locales (this might take a while)... 158s en_US.UTF-8... done 158s Generation complete. 158s Setting up libc-dev-bin (2.41-1ubuntu2) ... 158s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 158s Processing triggers for man-db (2.13.0-1) ... 159s Processing triggers for systemd (257.3-1ubuntu3) ... 160s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Starting pkgProblemResolver with broken count: 0 161s Starting 2 pkgProblemResolver with broken count: 0 161s Done 162s Solving dependencies... 162s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s autopkgtest [15:59:28]: rebooting testbed after setup commands that affected boot 186s autopkgtest [15:59:52]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 188s autopkgtest [15:59:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spam 192s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spam 2.11-1-1 (dsc) [2214 B] 192s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spam 2.11-1-1 (tar) [1813 kB] 192s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spam 2.11-1-1 (diff) [4652 B] 192s gpgv: Signature made Mon Jan 27 23:51:25 2025 UTC 192s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 192s gpgv: issuer "plessy@debian.org" 192s gpgv: Can't check signature: No public key 192s dpkg-source: warning: cannot verify inline signature for ./r-cran-spam_2.11-1-1.dsc: no acceptable signature found 193s autopkgtest [15:59:59]: testing package r-cran-spam version 2.11-1-1 193s autopkgtest [15:59:59]: build not needed 245s autopkgtest [16:00:51]: test run-unit-test: preparing testbed 245s Reading package lists... 245s Building dependency tree... 245s Reading state information... 246s Starting pkgProblemResolver with broken count: 0 246s Starting 2 pkgProblemResolver with broken count: 0 246s Done 247s The following NEW packages will be installed: 247s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 247s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 247s javascript-common libblas3 libcairo2 libdatrie1 libdeflate0 libfontconfig1 247s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 247s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 247s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 247s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 247s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 247s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblerc4 247s liblua5.4-0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 247s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 247s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 247s libxft2 libxrender1 libxss1 libxt6t64 littler node-bootstrap-sass 247s node-html5shiv node-normalize.css pandoc pandoc-data r-base-core 247s r-cran-base64enc r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 247s r-cran-cli r-cran-commonmark r-cran-crayon r-cran-desc r-cran-diffobj 247s r-cran-digest r-cran-dotcall64 r-cran-evaluate r-cran-evd r-cran-fastmap 247s r-cran-fields r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr 247s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr 247s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 247s r-cran-maps r-cran-matrix r-cran-memoise r-cran-mime r-cran-pkgbuild 247s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx 247s r-cran-promises r-cran-ps r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo 247s r-cran-r.rsp r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp 247s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 247s r-cran-sourcetools r-cran-spam r-cran-testthat r-cran-tinytex 247s r-cran-truncdist r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun 247s r-cran-xtable r-cran-yaml tcl tcl8.6 unzip x11-common xdg-utils zip 247s 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. 247s Need to get 126 MB of archives. 247s After this operation, 452 MB of additional disk space will be used. 247s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 248s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 249s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 249s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 249s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 250s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 250s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 252s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 252s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 252s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 253s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 253s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 253s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 253s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 253s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 253s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 253s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 254s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 254s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 254s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 255s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 255s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 255s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 255s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 255s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 255s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 255s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 256s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 256s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 256s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 256s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 257s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 257s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 257s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 257s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 257s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 257s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 257s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 258s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 260s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 260s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 261s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 261s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 261s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 261s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 261s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 261s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 261s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 261s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 261s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 261s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 262s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 262s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 262s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 263s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 263s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 263s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 264s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 264s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 264s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 264s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 264s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 298s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 298s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 298s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 298s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 298s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 298s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 298s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 329s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 329s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 329s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 331s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 331s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 331s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 332s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 332s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 332s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 333s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 334s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 334s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 334s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 335s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 335s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 335s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 335s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 335s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 336s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 341s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 341s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 342s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 342s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 342s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 343s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 343s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 344s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dotcall64 arm64 1.2-1 [35.9 kB] 344s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 344s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evd arm64 2.3-7.1-1 [1670 kB] 346s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 346s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 349s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spam arm64 2.11-1-1 [2737 kB] 352s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 354s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-maps arm64 3.4.2.1-1 [2350 kB] 356s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fields arm64 16.3.1-1 [3762 kB] 361s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 362s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 363s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 363s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 363s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 363s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 363s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 364s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 364s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 370s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 372s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 373s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 378s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 378s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 378s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 378s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 379s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 379s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 379s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.oo all 1.27.0-1 [979 kB] 380s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.utils all 2.13.0-1 [1423 kB] 381s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.cache all 0.16.0-1 [113 kB] 382s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 tcl8.6 arm64 8.6.16+dfsg-1 [14.8 kB] 382s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 tcl arm64 8.6.14build1 [4124 B] 382s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.rsp all 0.46.0+ds-1 [1412 kB] 383s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 383s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 383s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 384s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 384s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 384s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 388s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 390s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 390s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 392s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-truncdist all 1.0-2-4build1 [34.6 kB] 392s Preconfiguring packages ... 393s Fetched 126 MB in 2min 25s (870 kB/s) 393s Selecting previously unselected package fonts-dejavu-mono. 393s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 393s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 393s Unpacking fonts-dejavu-mono (2.37-8) ... 393s Selecting previously unselected package fonts-dejavu-core. 393s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 393s Unpacking fonts-dejavu-core (2.37-8) ... 393s Selecting previously unselected package fontconfig-config. 393s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 393s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 393s Selecting previously unselected package libfontconfig1:arm64. 393s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 393s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 393s Selecting previously unselected package fontconfig. 393s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 393s Unpacking fontconfig (2.15.0-2ubuntu1) ... 393s Selecting previously unselected package fonts-font-awesome. 393s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 393s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 393s Selecting previously unselected package fonts-glyphicons-halflings. 393s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 393s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 393s Selecting previously unselected package fonts-mathjax. 393s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 393s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 394s Selecting previously unselected package javascript-common. 394s Preparing to unpack .../008-javascript-common_12_all.deb ... 394s Unpacking javascript-common (12) ... 394s Selecting previously unselected package libblas3:arm64. 394s Preparing to unpack .../009-libblas3_3.12.1-2_arm64.deb ... 394s Unpacking libblas3:arm64 (3.12.1-2) ... 394s Selecting previously unselected package libpixman-1-0:arm64. 394s Preparing to unpack .../010-libpixman-1-0_0.44.0-3_arm64.deb ... 394s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 394s Selecting previously unselected package libxcb-render0:arm64. 394s Preparing to unpack .../011-libxcb-render0_1.17.0-2_arm64.deb ... 394s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 394s Selecting previously unselected package libxcb-shm0:arm64. 394s Preparing to unpack .../012-libxcb-shm0_1.17.0-2_arm64.deb ... 394s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 394s Selecting previously unselected package libxrender1:arm64. 394s Preparing to unpack .../013-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 394s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 394s Selecting previously unselected package libcairo2:arm64. 394s Preparing to unpack .../014-libcairo2_1.18.2-2_arm64.deb ... 394s Unpacking libcairo2:arm64 (1.18.2-2) ... 394s Selecting previously unselected package libdatrie1:arm64. 394s Preparing to unpack .../015-libdatrie1_0.2.13-3build1_arm64.deb ... 394s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 394s Selecting previously unselected package libdeflate0:arm64. 394s Preparing to unpack .../016-libdeflate0_1.23-1_arm64.deb ... 394s Unpacking libdeflate0:arm64 (1.23-1) ... 394s Selecting previously unselected package libgfortran5:arm64. 394s Preparing to unpack .../017-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 394s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 394s Selecting previously unselected package libgomp1:arm64. 394s Preparing to unpack .../018-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 394s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 394s Selecting previously unselected package libgraphite2-3:arm64. 394s Preparing to unpack .../019-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 394s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 394s Selecting previously unselected package libharfbuzz0b:arm64. 394s Preparing to unpack .../020-libharfbuzz0b_10.2.0-1_arm64.deb ... 394s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 394s Selecting previously unselected package x11-common. 394s Preparing to unpack .../021-x11-common_1%3a7.7+23ubuntu3_all.deb ... 394s Unpacking x11-common (1:7.7+23ubuntu3) ... 394s Selecting previously unselected package libice6:arm64. 394s Preparing to unpack .../022-libice6_2%3a1.1.1-1_arm64.deb ... 394s Unpacking libice6:arm64 (2:1.1.1-1) ... 394s Selecting previously unselected package libjpeg-turbo8:arm64. 394s Preparing to unpack .../023-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 394s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 394s Selecting previously unselected package libjpeg8:arm64. 394s Preparing to unpack .../024-libjpeg8_8c-2ubuntu11_arm64.deb ... 394s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 394s Selecting previously unselected package libjs-bootstrap. 394s Preparing to unpack .../025-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 394s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 394s Selecting previously unselected package libjs-popper.js. 394s Preparing to unpack .../026-libjs-popper.js_1.16.1+ds-6_all.deb ... 394s Unpacking libjs-popper.js (1.16.1+ds-6) ... 394s Selecting previously unselected package libjs-bootstrap4. 394s Preparing to unpack .../027-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 394s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 394s Selecting previously unselected package libjs-d3. 394s Preparing to unpack .../028-libjs-d3_3.5.17-4_all.deb ... 394s Unpacking libjs-d3 (3.5.17-4) ... 394s Selecting previously unselected package libjs-es5-shim. 394s Preparing to unpack .../029-libjs-es5-shim_4.6.7-2_all.deb ... 394s Unpacking libjs-es5-shim (4.6.7-2) ... 394s Selecting previously unselected package libjs-highlight.js. 394s Preparing to unpack .../030-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 394s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 395s Selecting previously unselected package libjs-jquery. 395s Preparing to unpack .../031-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 395s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 395s Selecting previously unselected package libjs-jquery-datatables. 395s Preparing to unpack .../032-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 395s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 395s Selecting previously unselected package libjs-sifter.js. 395s Preparing to unpack .../033-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 395s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 395s Selecting previously unselected package libjs-microplugin.js. 395s Preparing to unpack .../034-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 395s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 395s Selecting previously unselected package libjs-jquery-selectize.js. 395s Preparing to unpack .../035-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 395s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 395s Selecting previously unselected package libjs-jquery-ui. 395s Preparing to unpack .../036-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 395s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 395s Selecting previously unselected package libjs-json. 395s Preparing to unpack .../037-libjs-json_0~20221030+~1.0.8-1_all.deb ... 395s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 395s Selecting previously unselected package libjs-prettify. 395s Preparing to unpack .../038-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 395s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 395s Selecting previously unselected package liblapack3:arm64. 395s Preparing to unpack .../039-liblapack3_3.12.1-2_arm64.deb ... 395s Unpacking liblapack3:arm64 (3.12.1-2) ... 395s Selecting previously unselected package liblerc4:arm64. 395s Preparing to unpack .../040-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 395s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 395s Selecting previously unselected package liblua5.4-0:arm64. 395s Preparing to unpack .../041-liblua5.4-0_5.4.7-1_arm64.deb ... 395s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 395s Selecting previously unselected package libthai-data. 395s Preparing to unpack .../042-libthai-data_0.1.29-2build1_all.deb ... 395s Unpacking libthai-data (0.1.29-2build1) ... 395s Selecting previously unselected package libthai0:arm64. 395s Preparing to unpack .../043-libthai0_0.1.29-2build1_arm64.deb ... 395s Unpacking libthai0:arm64 (0.1.29-2build1) ... 395s Selecting previously unselected package libpango-1.0-0:arm64. 395s Preparing to unpack .../044-libpango-1.0-0_1.56.2-1_arm64.deb ... 395s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 395s Selecting previously unselected package libpangoft2-1.0-0:arm64. 395s Preparing to unpack .../045-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 395s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 395s Selecting previously unselected package libpangocairo-1.0-0:arm64. 395s Preparing to unpack .../046-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 395s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 395s Selecting previously unselected package libpaper2:arm64. 395s Preparing to unpack .../047-libpaper2_2.2.5-0.3_arm64.deb ... 395s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 395s Selecting previously unselected package libpaper-utils. 395s Preparing to unpack .../048-libpaper-utils_2.2.5-0.3_arm64.deb ... 395s Unpacking libpaper-utils (2.2.5-0.3) ... 395s Selecting previously unselected package libsharpyuv0:arm64. 395s Preparing to unpack .../049-libsharpyuv0_1.5.0-0.1_arm64.deb ... 395s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 395s Selecting previously unselected package libsm6:arm64. 395s Preparing to unpack .../050-libsm6_2%3a1.2.4-1_arm64.deb ... 395s Unpacking libsm6:arm64 (2:1.2.4-1) ... 395s Selecting previously unselected package libtcl8.6:arm64. 395s Preparing to unpack .../051-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 395s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 395s Selecting previously unselected package libjbig0:arm64. 396s Preparing to unpack .../052-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 396s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 396s Selecting previously unselected package libwebp7:arm64. 396s Preparing to unpack .../053-libwebp7_1.5.0-0.1_arm64.deb ... 396s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 396s Selecting previously unselected package libtiff6:arm64. 396s Preparing to unpack .../054-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 396s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 396s Selecting previously unselected package libxft2:arm64. 396s Preparing to unpack .../055-libxft2_2.3.6-1build1_arm64.deb ... 396s Unpacking libxft2:arm64 (2.3.6-1build1) ... 396s Selecting previously unselected package libxss1:arm64. 396s Preparing to unpack .../056-libxss1_1%3a1.2.3-1build3_arm64.deb ... 396s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 396s Selecting previously unselected package libtk8.6:arm64. 396s Preparing to unpack .../057-libtk8.6_8.6.16-1_arm64.deb ... 396s Unpacking libtk8.6:arm64 (8.6.16-1) ... 396s Selecting previously unselected package libxt6t64:arm64. 396s Preparing to unpack .../058-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 396s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 396s Selecting previously unselected package zip. 396s Preparing to unpack .../059-zip_3.0-14ubuntu2_arm64.deb ... 396s Unpacking zip (3.0-14ubuntu2) ... 396s Selecting previously unselected package unzip. 396s Preparing to unpack .../060-unzip_6.0-28ubuntu6_arm64.deb ... 396s Unpacking unzip (6.0-28ubuntu6) ... 396s Selecting previously unselected package xdg-utils. 396s Preparing to unpack .../061-xdg-utils_1.2.1-2ubuntu1_all.deb ... 396s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 396s Selecting previously unselected package r-base-core. 396s Preparing to unpack .../062-r-base-core_4.4.3-1_arm64.deb ... 396s Unpacking r-base-core (4.4.3-1) ... 396s Selecting previously unselected package r-cran-littler. 396s Preparing to unpack .../063-r-cran-littler_0.3.20-2_arm64.deb ... 396s Unpacking r-cran-littler (0.3.20-2) ... 396s Selecting previously unselected package littler. 396s Preparing to unpack .../064-littler_0.3.20-2_all.deb ... 396s Unpacking littler (0.3.20-2) ... 396s Selecting previously unselected package node-bootstrap-sass. 396s Preparing to unpack .../065-node-bootstrap-sass_3.4.3-2_all.deb ... 396s Unpacking node-bootstrap-sass (3.4.3-2) ... 396s Selecting previously unselected package node-html5shiv. 396s Preparing to unpack .../066-node-html5shiv_3.7.3+dfsg-5_all.deb ... 396s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 396s Selecting previously unselected package node-normalize.css. 396s Preparing to unpack .../067-node-normalize.css_8.0.1-5_all.deb ... 396s Unpacking node-normalize.css (8.0.1-5) ... 396s Selecting previously unselected package pandoc-data. 396s Preparing to unpack .../068-pandoc-data_3.1.11.1-3build1_all.deb ... 396s Unpacking pandoc-data (3.1.11.1-3build1) ... 397s Selecting previously unselected package pandoc. 397s Preparing to unpack .../069-pandoc_3.1.11.1+ds-2_arm64.deb ... 397s Unpacking pandoc (3.1.11.1+ds-2) ... 397s Selecting previously unselected package r-cran-base64enc. 397s Preparing to unpack .../070-r-cran-base64enc_0.1-3-3_arm64.deb ... 397s Unpacking r-cran-base64enc (0.1-3-3) ... 397s Selecting previously unselected package r-cran-brio. 397s Preparing to unpack .../071-r-cran-brio_1.1.5-1_arm64.deb ... 397s Unpacking r-cran-brio (1.1.5-1) ... 398s Selecting previously unselected package r-cran-rlang. 398s Preparing to unpack .../072-r-cran-rlang_1.1.5-1_arm64.deb ... 398s Unpacking r-cran-rlang (1.1.5-1) ... 398s Selecting previously unselected package r-cran-fastmap. 398s Preparing to unpack .../073-r-cran-fastmap_1.2.0-1_arm64.deb ... 398s Unpacking r-cran-fastmap (1.2.0-1) ... 398s Selecting previously unselected package r-cran-cachem. 398s Preparing to unpack .../074-r-cran-cachem_1.1.0-1_arm64.deb ... 398s Unpacking r-cran-cachem (1.1.0-1) ... 398s Selecting previously unselected package r-cran-digest. 398s Preparing to unpack .../075-r-cran-digest_0.6.37-1_arm64.deb ... 398s Unpacking r-cran-digest (0.6.37-1) ... 398s Selecting previously unselected package r-cran-htmltools. 398s Preparing to unpack .../076-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 398s Unpacking r-cran-htmltools (0.5.8.1-1) ... 398s Selecting previously unselected package r-cran-jquerylib. 398s Preparing to unpack .../077-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 398s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 398s Selecting previously unselected package r-cran-jsonlite. 398s Preparing to unpack .../078-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 398s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 398s Selecting previously unselected package r-cran-cli. 398s Preparing to unpack .../079-r-cran-cli_3.6.4-1_arm64.deb ... 398s Unpacking r-cran-cli (3.6.4-1) ... 398s Selecting previously unselected package r-cran-glue. 398s Preparing to unpack .../080-r-cran-glue_1.8.0-1_arm64.deb ... 398s Unpacking r-cran-glue (1.8.0-1) ... 398s Selecting previously unselected package r-cran-lifecycle. 398s Preparing to unpack .../081-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 398s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 398s Selecting previously unselected package r-cran-memoise. 398s Preparing to unpack .../082-r-cran-memoise_2.0.1-1_all.deb ... 398s Unpacking r-cran-memoise (2.0.1-1) ... 398s Selecting previously unselected package r-cran-mime. 398s Preparing to unpack .../083-r-cran-mime_0.12-2_arm64.deb ... 398s Unpacking r-cran-mime (0.12-2) ... 398s Selecting previously unselected package r-cran-fs. 398s Preparing to unpack .../084-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 398s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 398s Selecting previously unselected package r-cran-r6. 398s Preparing to unpack .../085-r-cran-r6_2.6.1-1_all.deb ... 398s Unpacking r-cran-r6 (2.6.1-1) ... 398s Selecting previously unselected package r-cran-rappdirs. 398s Preparing to unpack .../086-r-cran-rappdirs_0.3.3-1_arm64.deb ... 398s Unpacking r-cran-rappdirs (0.3.3-1) ... 398s Selecting previously unselected package r-cran-sass. 398s Preparing to unpack .../087-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 398s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 398s Selecting previously unselected package r-cran-bslib. 398s Preparing to unpack .../088-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 398s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 398s Selecting previously unselected package r-cran-ps. 398s Preparing to unpack .../089-r-cran-ps_1.9.0-1_arm64.deb ... 398s Unpacking r-cran-ps (1.9.0-1) ... 398s Selecting previously unselected package r-cran-processx. 398s Preparing to unpack .../090-r-cran-processx_3.8.6-1_arm64.deb ... 398s Unpacking r-cran-processx (3.8.6-1) ... 398s Selecting previously unselected package r-cran-callr. 398s Preparing to unpack .../091-r-cran-callr_3.7.6-1_all.deb ... 398s Unpacking r-cran-callr (3.7.6-1) ... 398s Selecting previously unselected package r-cran-commonmark. 398s Preparing to unpack .../092-r-cran-commonmark_1.9.2-2_arm64.deb ... 398s Unpacking r-cran-commonmark (1.9.2-2) ... 399s Selecting previously unselected package r-cran-crayon. 399s Preparing to unpack .../093-r-cran-crayon_1.5.3-1_all.deb ... 399s Unpacking r-cran-crayon (1.5.3-1) ... 399s Selecting previously unselected package r-cran-desc. 399s Preparing to unpack .../094-r-cran-desc_1.4.3-1_all.deb ... 399s Unpacking r-cran-desc (1.4.3-1) ... 399s Selecting previously unselected package r-cran-diffobj. 399s Preparing to unpack .../095-r-cran-diffobj_0.3.5-1_arm64.deb ... 399s Unpacking r-cran-diffobj (0.3.5-1) ... 399s Selecting previously unselected package r-cran-dotcall64. 399s Preparing to unpack .../096-r-cran-dotcall64_1.2-1_arm64.deb ... 399s Unpacking r-cran-dotcall64 (1.2-1) ... 399s Selecting previously unselected package r-cran-evaluate. 399s Preparing to unpack .../097-r-cran-evaluate_1.0.3-1_all.deb ... 399s Unpacking r-cran-evaluate (1.0.3-1) ... 399s Selecting previously unselected package r-cran-evd. 399s Preparing to unpack .../098-r-cran-evd_2.3-7.1-1_arm64.deb ... 399s Unpacking r-cran-evd (2.3-7.1-1) ... 399s Selecting previously unselected package r-cran-pkgkitten. 399s Preparing to unpack .../099-r-cran-pkgkitten_0.2.4-1_all.deb ... 399s Unpacking r-cran-pkgkitten (0.2.4-1) ... 399s Selecting previously unselected package r-cran-rcpp. 399s Preparing to unpack .../100-r-cran-rcpp_1.0.14-1_arm64.deb ... 399s Unpacking r-cran-rcpp (1.0.14-1) ... 399s Selecting previously unselected package r-cran-spam. 399s Preparing to unpack .../101-r-cran-spam_2.11-1-1_arm64.deb ... 399s Unpacking r-cran-spam (2.11-1-1) ... 399s Selecting previously unselected package r-cran-viridislite. 399s Preparing to unpack .../102-r-cran-viridislite_0.4.2-2_all.deb ... 399s Unpacking r-cran-viridislite (0.4.2-2) ... 399s Selecting previously unselected package r-cran-maps. 399s Preparing to unpack .../103-r-cran-maps_3.4.2.1-1_arm64.deb ... 399s Unpacking r-cran-maps (3.4.2.1-1) ... 399s Selecting previously unselected package r-cran-fields. 399s Preparing to unpack .../104-r-cran-fields_16.3.1-1_arm64.deb ... 399s Unpacking r-cran-fields (16.3.1-1) ... 399s Selecting previously unselected package r-cran-fontawesome. 399s Preparing to unpack .../105-r-cran-fontawesome_0.5.3-1_all.deb ... 399s Unpacking r-cran-fontawesome (0.5.3-1) ... 399s Selecting previously unselected package r-cran-xfun. 399s Preparing to unpack .../106-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 399s Unpacking r-cran-xfun (0.51+dfsg-1) ... 399s Selecting previously unselected package r-cran-highr. 399s Preparing to unpack .../107-r-cran-highr_0.11+dfsg-1_all.deb ... 399s Unpacking r-cran-highr (0.11+dfsg-1) ... 399s Selecting previously unselected package r-cran-later. 399s Preparing to unpack .../108-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 399s Unpacking r-cran-later (1.4.1+dfsg-1) ... 399s Selecting previously unselected package r-cran-magrittr. 399s Preparing to unpack .../109-r-cran-magrittr_2.0.3-1_arm64.deb ... 399s Unpacking r-cran-magrittr (2.0.3-1) ... 399s Selecting previously unselected package r-cran-promises. 399s Preparing to unpack .../110-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 399s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 399s Selecting previously unselected package r-cran-httpuv. 399s Preparing to unpack .../111-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 399s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 399s Selecting previously unselected package r-cran-yaml. 399s Preparing to unpack .../112-r-cran-yaml_2.3.10-1_arm64.deb ... 399s Unpacking r-cran-yaml (2.3.10-1) ... 399s Selecting previously unselected package libjs-mathjax. 400s Preparing to unpack .../113-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 400s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 400s Selecting previously unselected package r-cran-knitr. 400s Preparing to unpack .../114-r-cran-knitr_1.49+dfsg-1_all.deb ... 400s Unpacking r-cran-knitr (1.49+dfsg-1) ... 400s Selecting previously unselected package r-cran-lattice. 400s Preparing to unpack .../115-r-cran-lattice_0.22-6-1_arm64.deb ... 400s Unpacking r-cran-lattice (0.22-6-1) ... 400s Selecting previously unselected package r-cran-matrix. 400s Preparing to unpack .../116-r-cran-matrix_1.7-3-1_arm64.deb ... 400s Unpacking r-cran-matrix (1.7-3-1) ... 400s Selecting previously unselected package r-cran-pkgbuild. 400s Preparing to unpack .../117-r-cran-pkgbuild_1.4.6-1_all.deb ... 400s Unpacking r-cran-pkgbuild (1.4.6-1) ... 400s Selecting previously unselected package r-cran-rprojroot. 400s Preparing to unpack .../118-r-cran-rprojroot_2.0.4-2_all.deb ... 400s Unpacking r-cran-rprojroot (2.0.4-2) ... 400s Selecting previously unselected package r-cran-withr. 400s Preparing to unpack .../119-r-cran-withr_3.0.2+dfsg-1_all.deb ... 400s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 400s Selecting previously unselected package r-cran-pkgload. 400s Preparing to unpack .../120-r-cran-pkgload_1.4.0-1_all.deb ... 400s Unpacking r-cran-pkgload (1.4.0-1) ... 400s Selecting previously unselected package r-cran-praise. 400s Preparing to unpack .../121-r-cran-praise_1.0.0-4build1_all.deb ... 400s Unpacking r-cran-praise (1.0.0-4build1) ... 401s Selecting previously unselected package r-cran-r.methodss3. 401s Preparing to unpack .../122-r-cran-r.methodss3_1.8.2-1_all.deb ... 401s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 401s Selecting previously unselected package r-cran-r.oo. 401s Preparing to unpack .../123-r-cran-r.oo_1.27.0-1_all.deb ... 401s Unpacking r-cran-r.oo (1.27.0-1) ... 401s Selecting previously unselected package r-cran-r.utils. 401s Preparing to unpack .../124-r-cran-r.utils_2.13.0-1_all.deb ... 401s Unpacking r-cran-r.utils (2.13.0-1) ... 401s Selecting previously unselected package r-cran-r.cache. 401s Preparing to unpack .../125-r-cran-r.cache_0.16.0-1_all.deb ... 401s Unpacking r-cran-r.cache (0.16.0-1) ... 401s Selecting previously unselected package tcl8.6. 401s Preparing to unpack .../126-tcl8.6_8.6.16+dfsg-1_arm64.deb ... 401s Unpacking tcl8.6 (8.6.16+dfsg-1) ... 401s Selecting previously unselected package tcl. 401s Preparing to unpack .../127-tcl_8.6.14build1_arm64.deb ... 401s Unpacking tcl (8.6.14build1) ... 401s Selecting previously unselected package r-cran-r.rsp. 401s Preparing to unpack .../128-r-cran-r.rsp_0.46.0+ds-1_all.deb ... 401s Unpacking r-cran-r.rsp (0.46.0+ds-1) ... 401s Selecting previously unselected package r-cran-tinytex. 401s Preparing to unpack .../129-r-cran-tinytex_0.56-1_all.deb ... 401s Unpacking r-cran-tinytex (0.56-1) ... 401s Selecting previously unselected package libjs-modernizr. 401s Preparing to unpack .../130-libjs-modernizr_3.13.0-0.1_all.deb ... 401s Unpacking libjs-modernizr (3.13.0-0.1) ... 401s Selecting previously unselected package r-cran-xtable. 401s Preparing to unpack .../131-r-cran-xtable_1%3a1.8-4-2_all.deb ... 401s Unpacking r-cran-xtable (1:1.8-4-2) ... 401s Selecting previously unselected package r-cran-sourcetools. 401s Preparing to unpack .../132-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 401s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 401s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 401s Preparing to unpack .../133-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 401s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 401s Selecting previously unselected package r-cran-shiny. 401s Preparing to 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Setting up r-cran-bslib (0.8.0+dfsg-1) ... 405s Setting up r-cran-r.cache (0.16.0-1) ... 405s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 405s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 405s Setting up r-cran-r.rsp (0.46.0+ds-1) ... 405s Processing triggers for libc-bin (2.41-1ubuntu2) ... 405s Processing triggers for man-db (2.13.0-1) ... 406s Processing triggers for install-info (7.1.1-1) ... 408s autopkgtest [16:03:34]: test run-unit-test: [----------------------- 408s BEGIN TEST demo_cholesky.R 409s 409s R version 4.4.3 (2025-02-28) -- "Trophy Case" 409s Copyright (C) 2025 The R Foundation for Statistical Computing 409s Platform: aarch64-unknown-linux-gnu 409s 409s R is free software and comes with ABSOLUTELY NO WARRANTY. 409s You are welcome to redistribute it under certain conditions. 409s Type 'license()' or 'licence()' for distribution details. 409s 409s R is a collaborative project with many contributors. 409s Type 'contributors()' for more information and 409s 'citation()' on how to cite R or R packages in publications. 409s 409s Type 'demo()' for some demos, 'help()' for on-line help, or 409s 'help.start()' for an HTML browser interface to help. 409s Type 'q()' to quit R. 409s 409s > # HEADER #################################################### 409s > # This is file spam/tests/demo_cholesky.R. # 409s > # It is part of the R package spam, # 409s > # --> https://CRAN.R-project.org/package=spam # 409s > # --> https://CRAN.R-project.org/package=spam64 # 409s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 409s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 409s > # Roman Flury [aut], Daniel Gerber [ctb], # 409s > # Kaspar Moesinger [ctb] # 409s > # HEADER END ################################################ 409s > 409s > 409s > # We illustrate the Cholesky decompostion approaches 409s > options( echo=FALSE) 409s Spam version 2.11-1 (2025-01-20) is loaded. 409s Type 'help( Spam)' or 'demo( spam)' for a short introduction 409s and overview of this package. 409s Help for individual functions is also obtained by adding the 409s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 409s > 409s BEGIN TEST demo_jss10-example1.R 409s 409s R version 4.4.3 (2025-02-28) -- "Trophy Case" 409s Copyright (C) 2025 The R Foundation for Statistical Computing 409s Platform: aarch64-unknown-linux-gnu 409s 409s R is free software and comes with ABSOLUTELY NO WARRANTY. 409s You are welcome to redistribute it under certain conditions. 409s Type 'license()' or 'licence()' for distribution details. 409s 409s R is a collaborative project with many contributors. 409s Type 'contributors()' for more information and 409s 'citation()' on how to cite R or R packages in publications. 409s 409s Type 'demo()' for some demos, 'help()' for on-line help, or 409s 'help.start()' for an HTML browser interface to help. 409s Type 'q()' to quit R. 409s 409s > # HEADER #################################################### 409s > # This is file spam/tests/demo_jss10-example1.R. # 409s > # It is part of the R package spam, # 409s > # --> https://CRAN.R-project.org/package=spam # 409s > # --> https://CRAN.R-project.org/package=spam64 # 409s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 409s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 409s > # Roman Flury [aut], Daniel Gerber [ctb], # 409s > # Kaspar Moesinger [ctb] # 409s > # HEADER END ################################################ 409s > 409s > 409s > # JSS article: 409s > # "spam: A Sparse Matrix R Package with Emphasis on 409s > # MCMC Methods for Gaussian Markov Random Fields" 409s > # 409s > # Compared to the R code given in the article, here we give: 409s > # - improved formatting 409s > # - more comments 409s > # - the R code to construct the figures 409s > 409s > 409s > 409s > # SETUP: 409s > library("spam") 410s Spam version 2.11-1 (2025-01-20) is loaded. 410s Type 'help( Spam)' or 'demo( spam)' for a short introduction 410s and overview of this package. 410s Help for individual functions is also obtained by adding the 410s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 410s 410s Attaching package: 'spam' 410s 410s The following objects are masked from 'package:base': 410s 410s backsolve, forwardsolve 410s 410s > options(spam.structurebased=TRUE) 410s > data("UKDriverDeaths") 410s > 410s > y <- sqrt(c(UKDriverDeaths)) # square root counts 410s > 410s > n <- length(y) # n=192 410s > m <- 12 # We want to predict for one season. 410s > nm <- n+m # Total length of s and t 410s > 410s > 410s > priorshape <- c(4, 1, 1) # alpha's, as in Rue & Held (2005) 410s > priorinvscale <- c(4, 0.1, 0.0005) # beta's 410s > 410s > # Construct the individual block precisions 410s > # (based on unit precision parameters kappa, denoted with k): 410s > 410s > # Qsy, Qty are trivial: 410s > Qsy <- diag.spam(n) 410s > pad(Qsy) <- c(n+m, n) # previously: dim(Qsy) <- c(n+m, n) 410s > 410s > Qty <- Qsy 410s > 410s > Qst <- spam(0, nm, nm) 410s > Qst[cbind(1:n, 1:n)] <- rep(1, n) 410s > 410s > 410s > # The form of Qss is given by (Rue and Held equation 3.59). 410s > # Qss can be constructed with a loop: 410s > Qss <- spam(0, nm, nm) 410s > for (i in 0:(nm-m)) { 410s + Qss[i+1:m,i+1:m] <- Qss[i+1:m, i+1:m] + matrix(1,m,m) 410s + # Qss[i+1:m,i+1:m] <- Qss[i+1:m, i+1:m]+1 # previously... 410s + } 410s > 410s > # Note that for the final version we need: 410s > # Qss <- k_s * Qss + k_y * diag.spam(nm) 410s > 410s > 410s > 410s > 410s > # The form of Qtt is given by (Rue and Held equation 3.40). 410s > # Similar approaches to construct Qtt: 410s > 410s > Qtt <- spam(0,nm,nm) 410s > Qtt[cbind(1:(nm-1),2:nm)] <- -c(2,rep(4,nm-3),2) 410s > Qtt[cbind(1:(nm-2),3:nm)] <- rep(1,nm-2) 410s > Qtt <- Qtt + t( Qtt) 410s > diag(Qtt) <- c(1,5,rep(6,nm-4),5,1) 410s > 410s > 410s > 410s > # Create temporary kappa and precision matrix to illustrate 410s > # adjacency matrix and ordering. 410s > k <- c(1,1,1) 410s > Qst_yk <- rbind(cbind(k[2]*Qss + k[1]*diag.spam(nm), k[1]*Qst), 410s + cbind(k[1]*Qst, k[3]*Qtt + k[1]*diag.spam(nm))) 410s > 410s > struct <- chol(Qst_yk) 410s > 410s > 410s > 410s > # Note that we do not provide the exactly the same ordering 410s > # algorithms. Hence, the following is sightly different than 410s > # Figure RH4.2. 410s > cholQst_yk <- chol(Qst_yk,pivot="RCM") 410s > P <- ordering(cholQst_yk) 410s > display(Qst_yk) 410s > display(Qst_yk[P,P]) 410s Warning message: 410s default value for 'cex' in 'display' might not be the optimal choice 410s > 410s > 410s > 410s > # Recall: 410s > # k=( kappa_y, kappa_s, kappa_t)' 410s > 410s > # Gibbs sampler 410s > ngibbs <- 100 # In the original version is 500! 410s > burnin <- 10 # > 0 410s > totalg <- ngibbs+burnin 410s > set.seed(14) 410s > 410s > # Initialize parameters: 410s > spost <- tpost <- array(0, c(totalg, nm)) 410s > kpost <- array(0, c(totalg, 3)) 410s > 410s > # Starting values: 410s > kpost[1,] <- c(.5,28,500) 410s > tpost[1,] <- 40 410s Warning message: 410s default value for 'cex' in 'display' might not be the optimal choice 410s > 410s > # calculation of a few variables: 410s > postshape <- priorshape + c( n/2, (n+1)/2, (n+m-2)/2) 410s > 410s > 410s > for (ig in 2:totalg) { 410s + 410s + Q <- rbind(cbind(kpost[ig-1,2]*Qss + kpost[ig-1,1]*Qst, 410s + kpost[ig-1,1]*Qst), 410s + cbind(kpost[ig-1,1]*Qst, 410s + kpost[ig-1,3]*Qtt + kpost[ig-1,1]*Qst)) 410s + 410s + b <- c(kpost[ig-1,1]*Qsy %*% y, kpost[ig-1,1]*Qsy %*% y) 410s + 410s + tmp <- rmvnorm.canonical(1, b, Q, Lstruct=struct) 410s + 410s + 410s + spost[ig,] <- tmp[1:nm] 410s + 410s + tpost[ig,] <- tmp[1:nm+nm] 410s + 410s + 410s + tmp <- y-spost[ig,1:n]-tpost[ig,1:n] 410s + 410s + postinvscale <- priorinvscale + # prior contribution 410s + c( sum( tmp^2)/2, # Qyy_st is the identity 410s + t(spost[ig,]) %*% (Qss %*% spost[ig,])/2, 410s + t(tpost[ig,]) %*% (Qtt %*% tpost[ig,])/2) 410s + 410s + 410s + kpost[ig,] <- rgamma(3, postshape, postinvscale) 410s + 410s + if( (ig%%10)==0) cat('.') 410s + 410s + } 411s ...........> 411s > 411s > 411s > # Eliminate burn-in: 411s > kpost <- kpost[-c(1:burnin),] 411s > spost <- spost[-c(1:burnin),] 411s > tpost <- tpost[-c(1:burnin),] 411s > 411s > postquant <- apply(spost+tpost, 2, quantile,c(.025,.975)) 411s > postmean <- apply(spost+tpost, 2, mean) 411s > postmedi <- apply(spost+tpost, 2, median) 411s > 411s > if (F){ 411s + 411s + par(mfcol=c(1,1),mai=c(.6,.8,.01,.01)) 411s + 411s + plot( y^2, ylim=c(800,2900),xlim=c(0,nm),ylab="Counts") 411s + #lines( postmean^2, col=2) 411s + lines( postmedi^2, col=2) 411s + matlines( t(postquant)^2, col=4,lty=1) 411s + 411s + legend("topright",legend=c("Posterior median", "Quantiles of posterior sample", 411s + "Quantiles of predictive distribution"), 411s + bty="n",col=c(2,4,3),lty=1) 411s + 411s + 411s + 411s + 411s + # Constructing a predictive distribution: 411s + ypred <- rnorm( ngibbs*nm, c(spost+tpost),sd=rep( 1/sqrt(kpost[,1]), nm)) 411s + dim(ypred) <- c(ngibbs,nm) 411s + postpredquant <- apply(ypred, 2, quantile,c(.025,.975)) 411s + matlines( t(postpredquant)^2, col=3,lty=1) 411s + points(y^2) 411s + dev.off() 411s + 411s + kpostmedian <- apply(kpost,2,median) 411s + 411s + par(mfcol=c(1,3),mai=c(.65,.65,.01,.01),cex=.85,mgp=c(2.6,1,0)) 411s + 411s + matplot( log( kpost), lty=1, type="l",xlab="Index") 411s + abline(h=log(kpostmedian),col=3) 411s + acf( kpost[,3],ylab=expression(kappa[t])) 411s + plot(kpost[,2:3],ylab=expression(kappa[t]),xlab=expression(kappa[s]),cex=.8) 411s + abline(h=kpostmedian[3],v=kpostmedian[2],col=3) 411s + dev.off() 411s + 411s + 411s + allkappas <- rbind(apply(kpost,2,mean), 411s + apply(kpost,2,median), 411s + apply(1/kpost,2,mean), 411s + apply(1/kpost,2,median)) 411s + colnames(allkappas) <- c("kappa_y", "kappa_s", "kappa_t") 411s + rownames(allkappas) <- c("Prec (mean)", "Prec (median)", 411s + "Var (mean)", "Var (median) ") 411s + print(allkappas,4) 411s + 411s + png("example1_m1.png",width=300,height=300) 411s + par(mai=c(.5,.5,.05,.05)) 411s + display(Qst_yk) 411s + dev.off() 411s + 411s + png("example1_m2.png",width=300,height=300) 411s + par(mai=c(.5,.5,.05,.05)) 411s + display(struct) 411s + dev.off() 411s + 411s + 411s + summary(kpost) 411s + 411s + 411s + } 411s > 411s BEGIN TEST demo_jss10-figures-table.R 411s 411s R version 4.4.3 (2025-02-28) -- "Trophy Case" 411s Copyright (C) 2025 The R Foundation for Statistical Computing 411s Platform: aarch64-unknown-linux-gnu 411s 411s R is free software and comes with ABSOLUTELY NO WARRANTY. 411s You are welcome to redistribute it under certain conditions. 411s Type 'license()' or 'licence()' for distribution details. 411s 411s R is a collaborative project with many contributors. 411s Type 'contributors()' for more information and 411s 'citation()' on how to cite R or R packages in publications. 411s 411s Type 'demo()' for some demos, 'help()' for on-line help, or 411s 'help.start()' for an HTML browser interface to help. 411s Type 'q()' to quit R. 411s 411s > # HEADER #################################################### 411s > # This is file spam/tests/demo_jss10-figures-table.R. # 411s > # It is part of the R package spam, # 411s > # --> https://CRAN.R-project.org/package=spam # 411s > # --> https://CRAN.R-project.org/package=spam64 # 411s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 411s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 411s > # Roman Flury [aut], Daniel Gerber [ctb], # 411s > # Kaspar Moesinger [ctb] # 411s > # HEADER END ################################################ 411s > 411s > 411s > # This demo contains the R code to construct the figures and the table of the 411s > # article: 411s > # "spam: A Sparse Matrix R Package with Emphasis on 411s > # MCMC Methods for Gaussian Markov Random Fields" 411s > # submitted to JSS. 411s > 411s > 411s > # The code presented here differs in the following points form the actually used 411s > # one: 411s > # - Very large grid sizes or very high order neighbor structures are not included 411s > # here; 411s > # - Instead of (100+1) factorizations only (10+1) are performed here; 411s > # - No figure fine-tuning is done here. 411s > # - We had a few additional gc(), just to be sure. 411s > 411s > 411s > 411s > # The following are tests specific. Not all computers run with profiling. Instead 411s > # of commenting, we define dummies. 411s > options( echo=FALSE) 412s Spam version 2.11-1 (2025-01-20) is loaded. 412s Type 'help( Spam)' or 'demo( spam)' for a short introduction 412s and overview of this package. 412s Help for individual functions is also obtained by adding the 412s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 412s [1] 3 5 1 2 4 412s [1] 1 2 3 3 3 412s [1] 1 2 3 6 412s [1] 1.0000000 0.5000000 0.8660254 0.5773503 0.8164966 0.6123724 0.6123724 412s [8] 0.7905694 0.1581139 0.7745967 412s [1] 1 2 2 3 3 4 5 412s [1] 1 3 5 8 412s [1] 1 3 5 8 10 11 413s NULL 413s NULL 413s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 414s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 415s NULL 416s > 416s BEGIN TEST demo_jss15-BYM.R 416s 416s R version 4.4.3 (2025-02-28) -- "Trophy Case" 416s Copyright (C) 2025 The R Foundation for Statistical Computing 416s Platform: aarch64-unknown-linux-gnu 416s 416s R is free software and comes with ABSOLUTELY NO WARRANTY. 416s You are welcome to redistribute it under certain conditions. 416s Type 'license()' or 'licence()' for distribution details. 416s 416s R is a collaborative project with many contributors. 416s Type 'contributors()' for more information and 416s 'citation()' on how to cite R or R packages in publications. 416s 416s Type 'demo()' for some demos, 'help()' for on-line help, or 416s 'help.start()' for an HTML browser interface to help. 416s Type 'q()' to quit R. 416s 416s > # HEADER #################################################### 416s > # This is file spam/tests/demo_jss15-BYM.R. # 416s > # It is part of the R package spam, # 416s > # --> https://CRAN.R-project.org/package=spam # 416s > # --> https://CRAN.R-project.org/package=spam64 # 416s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 416s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 416s > # Roman Flury [aut], Daniel Gerber [ctb], # 416s > # Kaspar Moesinger [ctb] # 416s > # HEADER END ################################################ 416s > 416s > 416s > options( echo=FALSE) 417s Spam version 2.11-1 (2025-01-20) is loaded. 417s Type 'help( Spam)' or 'demo( spam)' for a short introduction 417s and overview of this package. 417s Help for individual functions is also obtained by adding the 417s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 417s [1] -0.45371922 0.17297575 0.02605778 -0.44984751 -0.36053283 0.01309363 417s [1] -1.341895 -3.756725 -2.514229 -4.411210 -6.486653 -5.101487 417s [1] 15.05715 53.22751 41.15492 13.16245 19.87138 30.27948 417s [1] 0 1 1 1 1 0 417s [1] 0.255439209 -0.299099415 -0.004660022 -0.392147580 -0.318792450 417s [6] -0.344095560 417s [1] -0.0152950744 0.0008418105 0.0400659014 -0.0160847172 0.0064331753 417s [6] -0.0154282422 417s [1] 21 417s [1] -780.3814 417s > 417s > 417s BEGIN TEST demo_jss15-Leroux.R 417s 417s R version 4.4.3 (2025-02-28) -- "Trophy Case" 417s Copyright (C) 2025 The R Foundation for Statistical Computing 417s Platform: aarch64-unknown-linux-gnu 417s 417s R is free software and comes with ABSOLUTELY NO WARRANTY. 417s You are welcome to redistribute it under certain conditions. 417s Type 'license()' or 'licence()' for distribution details. 417s 417s R is a collaborative project with many contributors. 417s Type 'contributors()' for more information and 417s 'citation()' on how to cite R or R packages in publications. 417s 417s Type 'demo()' for some demos, 'help()' for on-line help, or 417s 'help.start()' for an HTML browser interface to help. 417s Type 'q()' to quit R. 417s 417s > # HEADER #################################################### 417s > # This is file spam/tests/demo_jss15-Leroux.R. # 417s > # It is part of the R package spam, # 417s > # --> https://CRAN.R-project.org/package=spam # 417s > # --> https://CRAN.R-project.org/package=spam64 # 417s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 417s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 417s > # Roman Flury [aut], Daniel Gerber [ctb], # 417s > # Kaspar Moesinger [ctb] # 417s > # HEADER END ################################################ 417s > 417s > options( echo=FALSE) 418s Spam version 2.11-1 (2025-01-20) is loaded. 418s Type 'help( Spam)' or 'demo( spam)' for a short introduction 418s and overview of this package. 418s Help for individual functions is also obtained by adding the 418s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 418s Loading required package: stats4 418s 418s Attaching package: 'stats4' 418s 418s The following object is masked from 'package:spam': 418s 418s mle 418s 418s Loading required package: evd 419s [1] 0.9890008 0.9836375 0.9836375 0.9941272 0.9941272 0.9941272 419s [1] 13.60972 12.22357 14.06278 13.51154 13.66835 12.74985 419s [1] 0.115752190 -0.242792156 0.009907357 -0.144865999 -0.000139589 419s [6] -0.028916404 -0.032141235 -0.107868843 0.241070191 0.216479530 419s [11] 0.215633918 0.121392169 0.132614808 0.087540970 0.009744541 419s [16] 0.033720642 0.156237348 0.044155379 0.272346531 0.040463545 419s [21] 0.079639678 0.103953125 0.252556753 0.021593753 0.167167125 419s [26] 0.164189193 0.100494673 -0.213803862 0.117763888 -0.105802996 419s [31] 0.105966646 -0.099242014 -0.273013722 -0.048069002 -0.043229426 419s [36] -0.068403094 -0.213240808 -0.168754977 -0.087376979 -0.159318585 419s [41] -0.066445680 -0.042490650 -0.225786751 -0.311643655 -0.070018302 419s [46] -0.197298513 -0.172498476 -0.252130284 0.059552503 0.001103394 419s [51] 0.221565313 419s > 419s BEGIN TEST demo_spam.R 419s 419s R version 4.4.3 (2025-02-28) -- "Trophy Case" 419s Copyright (C) 2025 The R Foundation for Statistical Computing 419s Platform: aarch64-unknown-linux-gnu 419s 419s R is free software and comes with ABSOLUTELY NO WARRANTY. 419s You are welcome to redistribute it under certain conditions. 419s Type 'license()' or 'licence()' for distribution details. 419s 419s R is a collaborative project with many contributors. 419s Type 'contributors()' for more information and 419s 'citation()' on how to cite R or R packages in publications. 419s 419s Type 'demo()' for some demos, 'help()' for on-line help, or 419s 'help.start()' for an HTML browser interface to help. 419s Type 'q()' to quit R. 419s 419s > # HEADER #################################################### 419s > # This is file spam/tests/demo_spam.R. # 419s > # It is part of the R package spam, # 419s > # --> https://CRAN.R-project.org/package=spam # 419s > # --> https://CRAN.R-project.org/package=spam64 # 419s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 419s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 419s > # Roman Flury [aut], Daniel Gerber [ctb], # 419s > # Kaspar Moesinger [ctb] # 419s > # HEADER END ################################################ 419s > 419s > 419s > # This is a simple demo, wrapping up the functionality of spam. 419s > options( echo=FALSE) 420s Spam version 2.11-1 (2025-01-20) is loaded. 420s Type 'help( Spam)' or 'demo( spam)' for a short introduction 420s and overview of this package. 420s Help for individual functions is also obtained by adding the 420s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 420s [,1] [,2] [,3] [,4] [,5] [,6] [,7] 420s [1,] -0.6618498 1.231945 -0.3828219 0.8828018 -1.266815 -0.7666105 -1.421992 420s Class 'spam' (32-bit) 420s [,1] [,2] [,3] [,4] [,5] [,6] [,7] 420s [1,] 0 1.23194518 -0.3828219 0.8828018 -1.2668148 -0.7666105 -1.4219925 420s [2,] 0 -0.06488077 0.2994216 1.8627490 -0.1985833 1.4433629 -0.3282283 420s [3,] 0 1.06899373 0.6742398 1.6117253 0.1388658 0.8448793 0.2845701 420s [4,] 0 -0.37696531 -0.2928163 0.1354795 -0.2793360 -0.3993704 0.7193359 420s [5,] 0 1.04318309 0.4880534 1.0880860 0.7089194 -1.4277676 0.4324160 420s Class 'spam' (32-bit) 420s [1] -0.36181804 0.07322929 -0.13634352 0.59605327 0.52252315 420s > 420s BEGIN TEST demo_timing.R 420s 420s R version 4.4.3 (2025-02-28) -- "Trophy Case" 420s Copyright (C) 2025 The R Foundation for Statistical Computing 420s Platform: aarch64-unknown-linux-gnu 420s 420s R is free software and comes with ABSOLUTELY NO WARRANTY. 420s You are welcome to redistribute it under certain conditions. 420s Type 'license()' or 'licence()' for distribution details. 420s 420s R is a collaborative project with many contributors. 420s Type 'contributors()' for more information and 420s 'citation()' on how to cite R or R packages in publications. 420s 420s Type 'demo()' for some demos, 'help()' for on-line help, or 420s 'help.start()' for an HTML browser interface to help. 420s Type 'q()' to quit R. 420s 420s > # HEADER #################################################### 420s > # This is file spam/tests/demo_timing.R. # 420s > # It is part of the R package spam, # 420s > # --> https://CRAN.R-project.org/package=spam # 420s > # --> https://CRAN.R-project.org/package=spam64 # 420s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 420s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 420s > # Roman Flury [aut], Daniel Gerber [ctb], # 420s > # Kaspar Moesinger [ctb] # 420s > # HEADER END ################################################ 420s > 420s > 420s > # We construct a few large matrices and we compare how much faster (slower) 420s > # we are compared to the full matrix analysis. 420s > # Since all the calculation are also done with full matrices, we do not 420s > # exagerate with the sizes. 420s > 420s > options( echo=FALSE) 421s Comparing: Transpose 421s Spam version 2.11-1 (2025-01-20) is loaded. 421s Type 'help( Spam)' or 'demo( spam)' for a short introduction 421s and overview of this package. 421s Help for individual functions is also obtained by adding the 421s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 421s Comparing: multiplication 421s Comparing: solving 421s Comparing: Transpose 421s Comparing: multiplication 421s Comparing: add identity 421s Comparing: add identity quicker 422s Comparing: solving 422s Matrix object of class 'spam' of dimension 10x10, 422s with 10 (row-wise) nonzero elements. 422s Density of the matrix is 10%. 422s Class 'spam' (32-bit) 422s > 422s > 422s > 422s > 422s > 422s > # illustrate the new spam x matrix multiply: 422s > if (F){ 422s + n <- 1000 422s + 422s + A <- spam(0,n,n) 422s + A[cbind(1:(n-1),2:n)] <- -c(2,rep(4,n-3),2) 422s + A[cbind(1:(n-2),3:n)] <- rep(1,n-2) 422s + A <- A + t( A) 422s + diag(A) <- c(1,5,rep(6,n-4),5,1) 422s + 422s + 422s + B <- array(rnorm(n*n),c(n,n)) 422s + 422s + system.time(C1 <- .spam.matmul.mat(A,B)) 422s + system.time(C2 <- .spam.matmul(A,B)) 422s + norm(C1-C2) 422s + 422s + 422s + } 422s > 422s BEGIN TEST jss_areal_counts.R 422s 422s R version 4.4.3 (2025-02-28) -- "Trophy Case" 422s Copyright (C) 2025 The R Foundation for Statistical Computing 422s Platform: aarch64-unknown-linux-gnu 422s 422s R is free software and comes with ABSOLUTELY NO WARRANTY. 422s You are welcome to redistribute it under certain conditions. 422s Type 'license()' or 'licence()' for distribution details. 422s 422s R is a collaborative project with many contributors. 422s Type 'contributors()' for more information and 422s 'citation()' on how to cite R or R packages in publications. 422s 422s Type 'demo()' for some demos, 'help()' for on-line help, or 422s 'help.start()' for an HTML browser interface to help. 422s Type 'q()' to quit R. 422s 422s > # HEADER #################################################### 422s > # This is file spam/tests/jss_areal_counts.R. # 422s > # It is part of the R package spam, # 422s > # --> https://CRAN.R-project.org/package=spam # 422s > # --> https://CRAN.R-project.org/package=spam64 # 422s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 422s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 422s > # Roman Flury [aut], Daniel Gerber [ctb], # 422s > # Kaspar Moesinger [ctb] # 422s > # HEADER END ################################################ 422s > 422s > 422s > # JSS article: 422s > # "Pitfalls in the implementation of Bayesian 422s > # hierarchical modeling of areal count data. 422s > # An illustration using BYM and Leroux models." 422s > # 422s > # test the MCMC sampler from the paper with 30 iterations. 422s > 422s > 422s > # SETUP: 422s > library("spam") 423s Spam version 2.11-1 (2025-01-20) is loaded. 423s Type 'help( Spam)' or 'demo( spam)' for a short introduction 423s and overview of this package. 423s Help for individual functions is also obtained by adding the 423s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 423s 423s Attaching package: 'spam' 423s 423s The following objects are masked from 'package:base': 423s 423s backsolve, forwardsolve 423s 423s > options(spam.structurebased=TRUE) 423s > 423s > # BYM --------------------------------------------- 423s > data(Oral); attach(Oral) 423s > path <- system.file("demodata/germany.adjacency", package = "spam") 423s > A <- adjacency.landkreis(path); n <- dim(A)[1] 423s > 423s > set.seed(2) 423s > hyperA <- c(1, 1); hyperB <- c(0.5, .01) 423s > totalg <- 30 423s > 423s > upost <- vpost <- array(0, c(totalg, n)) 423s > kpost <- array(NA, c(totalg, 2)); accept <- rep(NA, totalg) 423s > upost[1,] <- vpost[1,] <- rep(.001, 544); kpost[1,] <- c(10, 100) 423s > 423s > eta <- upost[1,] + vpost[1,] 423s > C <- exp(eta) * E; diagC <- diag.spam(c(rep(0, n), C)) 423s > b <- c( rep(0, n), Y + (eta - 1) * C) 423s > Qu <- R <- precmat.IGMRFirreglat(A); pad(Qu) <- c(2 * n, 2 * n) 423s > Qv <- as.spam(rbind(cbind( diag(n), -diag(n)), 423s + cbind(-diag(n), diag(n)))) 423s > Q <- kpost[1,1] * Qu + kpost[1,2] * Qv + diagC 423s > struct <- chol(Q, memory = list(nnzcolindices = 6467)) 423s > uRuHalf <- t(upost[1,]) %*% (R %*% upost[1,]) / 2 423s > vvHalf <- t(vpost[1,]) %*% vpost[1,] / 2 423s > postshape <- hyperA + c(n - 1, n) / 2 423s > 423s > for (i in 2:totalg) { 423s + kpost[i,] <- rgamma(2, postshape, hyperB + c(uRuHalf, vvHalf)) 423s + 423s + etaTilde <- eta 423s + for(index in 1:2){ 423s + C <- E * exp(etaTilde) 423s + diagC <- diag.spam(c(rep(0, n), C)) 423s + b <- c(rep(0, 544), Y + (etaTilde - 1) * C) 423s + Q <- kpost[i,1] * Qu + kpost[i,2] * Qv + diagC 423s + etaTilde <- c(solve.spam(Q, b, 423s + Rstruct = struct))[1:n + n] 423s + } 423s + 423s + C <- exp(etaTilde) * E; diagC <- diag.spam(c(rep(0, n), C)) 423s + b <- c( rep(0, n), Y + (etaTilde - 1) * C) 423s + Q <- kpost[i,1] * Qu + kpost[i,2] * Qv + diagC 423s + 423s + x_ <- c(rmvnorm.canonical(1, b, Q, Rstruct = struct)) 423s + upost[i,] <- x_[1:n]; eta_ <- x_[1:n + n]; vpost[i,] <- eta_ - upost[i,] 423s + uRuHalf_ <- t(upost[i,]) %*% (R %*% upost[i,]) / 2 423s + vvHalf_ <- t(vpost[i,]) %*% vpost[i,] / 2 423s + 423s + etaTilde_ <- eta_ 423s + for(index in 1:2){ 423s + C_ <- E * exp(etaTilde_) 423s + diagC_ <- diag.spam(c(rep(0, n), C_)) 423s + b_ <- c(rep(0, 544), Y + (etaTilde_ - 1) * C_) 423s + Q_<- kpost[i,1] * Qu + kpost[i,2] * Qv + diagC_ 423s + etaTilde_ <- c(solve.spam(Q_, b_, 423s + Rstruct = struct))[1:n + n] 423s + } 423s + 423s + C_ <- exp(etaTilde_) * E; diagC_ <- diag.spam(c(rep(0, n), C_)) 423s + b_ <- c( rep(0, n), Y + (etaTilde_ - 1) * C_) 423s + Q_ <- kpost[i,1] * Qu + kpost[i,2] * Qv + diagC_ 423s + 423s + logPost_ <- sum(Y * eta_ - E * exp(eta_)) - 423s + kpost[i,1] * uRuHalf_ - kpost[i, 2] * vvHalf_ 423s + logPost <- sum(Y * eta - E * exp(eta)) - kpost[i,1] * uRuHalf - 423s + kpost[i,2] * vvHalf 423s + logApproxX_ <- - kpost[i,1] * uRuHalf_ - kpost[i,2] * vvHalf_ - 423s + sum(.5 * eta_^2 * C) + sum(b * eta_) 423s + logApproxX <- - kpost[i,1] * uRuHalf - kpost[i,2] * vvHalf - 423s + sum(.5 * eta^2 * C_) + sum(b_ * eta) 423s + logAlpha <- min(0, logPost_ - logPost + logApproxX - logApproxX_) 423s + 423s + if (log(runif(1)) < logAlpha) { 423s + uRuHalf <- uRuHalf_; vvHalf <- vvHalf_ 423s + eta <- eta_; b <- b_; C <- C_; accept[i] <- 1 423s + } else{ 423s + accept[i] <- 0; upost[i,] <- upost[i-1,]; vpost[i,] <- vpost[i-1,]} 423s + } 423s > 423s > # values of 30th iteration 423s > head(eta) 423s [1] -0.45371922 0.17297575 0.02605778 -0.44984751 -0.36053283 0.01309363 423s > tail(b) 423s [1] -1.341895 -3.756725 -2.514229 -4.411210 -6.486653 -5.101487 423s > head(C) 423s [1] 15.05715 53.22751 41.15492 13.16245 19.87138 30.27948 423s > tail(accept) 423s [1] 0 1 1 1 1 0 423s > tail(upost[30,]) 423s [1] 0.255439209 -0.299099415 -0.004660022 -0.392147580 -0.318792450 423s [6] -0.344095560 423s > tail(vpost[30,]) 423s [1] -0.0152950744 0.0008418105 0.0400659014 -0.0160847172 0.0064331753 423s [6] -0.0154282422 423s > sum(accept[-1]) 423s [1] 21 423s > sum(upost) 423s [1] -780.3814 423s > 423s > 423s BEGIN TEST testthat.R 423s 423s R version 4.4.3 (2025-02-28) -- "Trophy Case" 423s Copyright (C) 2025 The R Foundation for Statistical Computing 423s Platform: aarch64-unknown-linux-gnu 423s 423s R is free software and comes with ABSOLUTELY NO WARRANTY. 423s You are welcome to redistribute it under certain conditions. 423s Type 'license()' or 'licence()' for distribution details. 423s 423s R is a collaborative project with many contributors. 423s Type 'contributors()' for more information and 423s 'citation()' on how to cite R or R packages in publications. 423s 423s Type 'demo()' for some demos, 'help()' for on-line help, or 423s 'help.start()' for an HTML browser interface to help. 423s Type 'q()' to quit R. 423s 423s > # HEADER #################################################### 423s > # This is file spam/tests/testthat.R. # 423s > # It is part of the R package spam, # 423s > # --> https://CRAN.R-project.org/package=spam # 423s > # --> https://CRAN.R-project.org/package=spam64 # 423s > # --> https://git.math.uzh.ch/reinhard.furrer/spam # 423s > # by Reinhard Furrer [aut, cre], Florian Gerber [aut], # 423s > # Roman Flury [aut], Daniel Gerber [ctb], # 423s > # Kaspar Moesinger [ctb] # 423s > # HEADER END ################################################ 423s > 423s > library("testthat") 424s > # library("spam") 424s > 424s > test_check("spam") 424s Loading required package: spam 424s Spam version 2.11-1 (2025-01-20) is loaded. 424s Type 'help( Spam)' or 'demo( spam)' for a short introduction 424s and overview of this package. 424s Help for individual functions is also obtained by adding the 424s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 424s 424s Attaching package: 'spam' 424s 424s The following objects are masked from 'package:base': 424s 424s backsolve, forwardsolve 424s 429s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 730 ] 429s > 429s autopkgtest [16:03:55]: test run-unit-test: -----------------------] 430s autopkgtest [16:03:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 430s run-unit-test PASS 430s autopkgtest [16:03:56]: test pkg-r-autopkgtest: preparing testbed 1512s autopkgtest [16:21:58]: testbed dpkg architecture: arm64 1512s autopkgtest [16:21:58]: testbed apt version: 2.9.33 1512s autopkgtest [16:21:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1512s autopkgtest [16:21:58]: testbed release detected to be: plucky 1513s autopkgtest [16:21:59]: updating testbed package index (apt update) 1514s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 1514s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1514s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1514s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1514s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 1515s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 1515s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 1515s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 1515s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 1515s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 1515s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 1515s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 1515s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 1515s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 1515s Fetched 1078 kB in 2s (647 kB/s) 1516s Reading package lists... 1517s Reading package lists... 1517s Building dependency tree... 1517s Reading state information... 1517s Calculating upgrade... 1518s Calculating upgrade... 1518s The following packages will be upgraded: 1518s pinentry-curses python3-jinja2 strace 1518s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1518s Need to get 647 kB of archives. 1518s After this operation, 11.3 kB of additional disk space will be used. 1518s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 1519s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 1519s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 1519s Fetched 647 kB in 1s (767 kB/s) 1520s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 1520s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 1520s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 1520s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 1520s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 1520s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 1520s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 1520s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 1520s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 1520s Setting up strace (6.13+ds-1ubuntu1) ... 1520s Processing triggers for man-db (2.13.0-1) ... 1521s Reading package lists... 1521s Building dependency tree... 1521s Reading state information... 1521s Solving dependencies... 1522s The following packages will be REMOVED: 1522s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 1522s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 1522s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 1522s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 1522s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 1522s After this operation, 267 MB disk space will be freed. 1522s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 1522s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 1522s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 1522s Removing libpython3.12t64:arm64 (3.12.9-1) ... 1522s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 1522s Removing libnsl2:arm64 (1.3.0-3build3) ... 1522s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 1522s Removing libunwind8:arm64 (1.6.2-3.1) ... 1522s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 1523s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 1524s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 1525s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 1525s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 1525s /etc/kernel/postrm.d/initramfs-tools: 1525s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 1525s /etc/kernel/postrm.d/zz-flash-kernel: 1525s flash-kernel: Kernel 6.11.0-8-generic has been removed. 1525s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 1525s /etc/kernel/postrm.d/zz-update-grub: 1525s Sourcing file `/etc/default/grub' 1525s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1525s Generating grub configuration file ... 1525s Found linux image: /boot/vmlinuz-6.14.0-10-generic 1525s Found initrd image: /boot/initrd.img-6.14.0-10-generic 1526s Warning: os-prober will not be executed to detect other bootable partitions. 1526s Systems on them will not be added to the GRUB boot configuration. 1526s Check GRUB_DISABLE_OS_PROBER documentation entry. 1526s Adding boot menu entry for UEFI Firmware Settings ... 1526s done 1526s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1526s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1526s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 1526s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 1526s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 1526s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 1526s autopkgtest [16:22:12]: upgrading testbed (apt dist-upgrade and autopurge) 1526s Reading package lists... 1527s Building dependency tree... 1527s Reading state information... 1527s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1527s Starting 2 pkgProblemResolver with broken count: 0 1527s Done 1528s Entering ResolveByKeep 1528s 1529s Calculating upgrade... 1529s The following packages will be upgraded: 1529s libc-bin libc-dev-bin libc6 libc6-dev locales 1529s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1529s Need to get 9530 kB of archives. 1529s After this operation, 0 B of additional disk space will be used. 1529s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 1530s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 1530s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 1530s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 1530s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 1531s Preconfiguring packages ... 1531s Fetched 9530 kB in 2s (4720 kB/s) 1531s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1531s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 1531s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1532s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 1532s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1532s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 1532s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1532s Setting up libc6:arm64 (2.41-1ubuntu2) ... 1532s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1532s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 1532s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1532s Setting up libc-bin (2.41-1ubuntu2) ... 1532s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1532s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 1532s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 1533s Setting up locales (2.41-1ubuntu2) ... 1533s Generating locales (this might take a while)... 1535s en_US.UTF-8... done 1535s Generation complete. 1535s Setting up libc-dev-bin (2.41-1ubuntu2) ... 1535s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 1535s Processing triggers for man-db (2.13.0-1) ... 1536s Processing triggers for systemd (257.3-1ubuntu3) ... 1537s Reading package lists... 1537s Building dependency tree... 1537s Reading state information... 1537s Starting pkgProblemResolver with broken count: 0 1538s Starting 2 pkgProblemResolver with broken count: 0 1538s Done 1538s Solving dependencies... 1538s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1539s autopkgtest [16:22:25]: rebooting testbed after setup commands that affected boot 1565s Reading package lists... 1566s Building dependency tree... 1566s Reading state information... 1566s Starting pkgProblemResolver with broken count: 0 1566s Starting 2 pkgProblemResolver with broken count: 0 1566s Done 1567s The following NEW packages will be installed: 1567s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 1567s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1567s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 1567s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 1567s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 1567s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 1567s javascript-common libasan8 libblas-dev libblas3 libbz2-dev libcairo2 1567s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev 1567s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 1567s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 1567s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 1567s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 1567s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 1567s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 1567s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 1567s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 1567s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 1567s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 1567s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev 1567s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 1567s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 1567s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 1567s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 1567s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 1567s r-cran-base64enc r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 1567s r-cran-cli r-cran-commonmark r-cran-crayon r-cran-desc r-cran-diffobj 1567s r-cran-digest r-cran-dotcall64 r-cran-evaluate r-cran-evd r-cran-fastmap 1567s r-cran-fields r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr 1567s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr 1567s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 1567s r-cran-maps r-cran-matrix r-cran-memoise r-cran-mime r-cran-pkgbuild 1567s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx 1567s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang 1567s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 1567s r-cran-sourcetools r-cran-spam r-cran-testthat r-cran-tinytex 1567s r-cran-truncdist r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun 1567s r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 1567s 0 upgraded, 186 newly installed, 0 to remove and 0 not upgraded. 1567s Need to get 215 MB of archives. 1567s After this operation, 781 MB of additional disk space will be used. 1567s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 1568s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 1568s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 1580s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 1580s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 1580s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 1580s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 1580s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 1580s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 1580s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 1583s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 1584s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 1588s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 1589s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 1591s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 1594s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 1618s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 1618s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 1618s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 1618s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 1621s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 1635s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 1635s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 1635s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 1635s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 1635s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 1635s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 1636s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 1637s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 1637s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 1637s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 1637s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1638s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1638s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1640s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 1641s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 1641s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 1655s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 1655s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 1655s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 1655s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 1655s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 1655s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 1656s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 1656s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 1656s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 1656s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 1656s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 1656s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 1656s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 1657s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 1657s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 1657s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 1657s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 1657s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 1658s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1658s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 1658s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 1673s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 1673s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 1673s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 1673s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 1673s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 1673s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1674s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 1674s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 1674s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 1675s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 1675s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 1675s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1676s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 1676s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 1676s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 1676s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 1676s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1676s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 1676s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 1676s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 1679s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 1684s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 1684s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 1684s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 1685s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 1685s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 1685s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 1685s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 1685s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 1685s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 1685s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 1685s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 1686s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 1686s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 1686s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 1687s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 1687s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 1688s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 1688s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 1689s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 1689s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 1689s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 1690s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 1690s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 1691s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 1691s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 1691s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 1691s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 1692s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 1692s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 1692s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 1692s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 1692s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 1724s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 1724s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 1724s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 1724s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 1724s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 1724s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 1724s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 1755s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 1755s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 1755s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 1755s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 1756s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 1756s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 1756s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 1756s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 1756s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 1758s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 1758s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 1758s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 1758s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 1759s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 1759s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 1759s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 1761s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 1761s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 1761s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 1761s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 1761s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 1761s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 1761s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 1761s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 1762s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 1767s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 1768s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 1768s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 1769s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 1769s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 1769s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 1769s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 1771s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dotcall64 arm64 1.2-1 [35.9 kB] 1771s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 1771s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evd arm64 2.3-7.1-1 [1670 kB] 1772s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 1772s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 1774s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spam arm64 2.11-1-1 [2737 kB] 1778s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 1779s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-maps arm64 3.4.2.1-1 [2350 kB] 1781s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fields arm64 16.3.1-1 [3762 kB] 1785s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 1787s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 1787s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 1787s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 1788s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 1788s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 1788s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 1789s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 1789s Get:168 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1795s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 1796s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 1797s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 1801s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 1802s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 1802s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 1802s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 1802s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 1802s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 1802s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 1802s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 1803s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 1803s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 1803s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 1807s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 1808s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 1808s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 1810s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-truncdist all 1.0-2-4build1 [34.6 kB] 1811s Preconfiguring packages ... 1811s Fetched 215 MB in 4min 3s (884 kB/s) 1811s Selecting previously unselected package libisl23:arm64. 1811s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 1811s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 1811s Unpacking libisl23:arm64 (0.27-1) ... 1811s Selecting previously unselected package libmpc3:arm64. 1811s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 1811s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 1811s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 1811s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 1811s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 1811s Selecting previously unselected package cpp-14. 1811s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 1811s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 1811s Selecting previously unselected package cpp-aarch64-linux-gnu. 1811s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 1811s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1811s Selecting previously unselected package cpp. 1811s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 1811s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1811s Selecting previously unselected package libcc1-0:arm64. 1811s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 1811s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 1811s Selecting previously unselected package libgomp1:arm64. 1811s Preparing to unpack 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Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 1813s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1813s Selecting previously unselected package g++. 1813s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 1813s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1813s Selecting previously unselected package build-essential. 1813s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 1813s Unpacking build-essential (12.10ubuntu1) ... 1813s Selecting previously unselected package dctrl-tools. 1813s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 1813s Unpacking dctrl-tools (2.24-3build3) ... 1813s Selecting previously unselected package fonts-dejavu-mono. 1813s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 1813s Unpacking fonts-dejavu-mono (2.37-8) ... 1813s Selecting previously unselected package fonts-dejavu-core. 1813s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb 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.../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1813s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1813s Selecting previously unselected package fonts-mathjax. 1813s Preparing to unpack .../033-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1813s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1814s Selecting previously unselected package libgfortran5:arm64. 1814s Preparing to unpack .../034-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 1814s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 1814s Selecting previously unselected package libgfortran-14-dev:arm64. 1814s Preparing to unpack .../035-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 1814s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 1814s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 1814s Preparing to unpack .../036-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 1814s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 1814s Selecting previously unselected package gfortran-14. 1814s Preparing to unpack .../037-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 1814s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 1814s Selecting previously unselected package gfortran-aarch64-linux-gnu. 1814s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 1814s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1814s Selecting previously unselected package gfortran. 1814s Preparing to unpack .../039-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 1814s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 1814s Selecting previously unselected package icu-devtools. 1814s Preparing to unpack .../040-icu-devtools_76.1-1ubuntu2_arm64.deb ... 1814s Unpacking icu-devtools (76.1-1ubuntu2) ... 1814s Selecting previously unselected package javascript-common. 1814s Preparing to unpack .../041-javascript-common_12_all.deb ... 1814s Unpacking javascript-common (12) ... 1814s Selecting previously unselected package libblas3:arm64. 1814s Preparing to unpack .../042-libblas3_3.12.1-2_arm64.deb ... 1814s Unpacking libblas3:arm64 (3.12.1-2) ... 1814s Selecting previously unselected package libblas-dev:arm64. 1814s Preparing to unpack .../043-libblas-dev_3.12.1-2_arm64.deb ... 1814s Unpacking libblas-dev:arm64 (3.12.1-2) ... 1814s Selecting previously unselected package libbz2-dev:arm64. 1814s Preparing to unpack .../044-libbz2-dev_1.0.8-6_arm64.deb ... 1814s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 1814s Selecting previously unselected package libpixman-1-0:arm64. 1814s Preparing to unpack .../045-libpixman-1-0_0.44.0-3_arm64.deb ... 1814s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 1814s Selecting previously unselected package libxcb-render0:arm64. 1814s Preparing to unpack .../046-libxcb-render0_1.17.0-2_arm64.deb ... 1814s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 1814s Selecting previously unselected package libxcb-shm0:arm64. 1814s Preparing to unpack .../047-libxcb-shm0_1.17.0-2_arm64.deb ... 1814s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 1814s Selecting previously unselected package libxrender1:arm64. 1814s Preparing to unpack .../048-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 1814s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 1814s Selecting previously unselected package libcairo2:arm64. 1814s Preparing to unpack .../049-libcairo2_1.18.2-2_arm64.deb ... 1814s Unpacking libcairo2:arm64 (1.18.2-2) ... 1814s Selecting previously unselected package libdatrie1:arm64. 1814s Preparing to unpack .../050-libdatrie1_0.2.13-3build1_arm64.deb ... 1814s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 1814s Selecting previously unselected package libdeflate0:arm64. 1814s Preparing to unpack .../051-libdeflate0_1.23-1_arm64.deb ... 1814s Unpacking libdeflate0:arm64 (1.23-1) ... 1814s Selecting previously unselected package libdeflate-dev:arm64. 1814s Preparing to unpack .../052-libdeflate-dev_1.23-1_arm64.deb ... 1814s Unpacking libdeflate-dev:arm64 (1.23-1) ... 1815s Selecting previously unselected package libgraphite2-3:arm64. 1815s Preparing to unpack .../053-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 1815s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 1815s Selecting previously unselected package libharfbuzz0b:arm64. 1815s Preparing to unpack .../054-libharfbuzz0b_10.2.0-1_arm64.deb ... 1815s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 1815s Selecting previously unselected package x11-common. 1815s Preparing to unpack .../055-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1815s Unpacking x11-common (1:7.7+23ubuntu3) ... 1815s Selecting previously unselected package libice6:arm64. 1815s Preparing to unpack .../056-libice6_2%3a1.1.1-1_arm64.deb ... 1815s Unpacking libice6:arm64 (2:1.1.1-1) ... 1815s Selecting previously unselected package libicu-dev:arm64. 1815s Preparing to unpack .../057-libicu-dev_76.1-1ubuntu2_arm64.deb ... 1815s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 1815s Selecting previously unselected package libjpeg-turbo8:arm64. 1815s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 1815s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 1815s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 1815s Preparing to unpack .../059-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 1815s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 1815s Selecting previously unselected package libjpeg8:arm64. 1815s Preparing to unpack .../060-libjpeg8_8c-2ubuntu11_arm64.deb ... 1815s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 1815s Selecting previously unselected package libjpeg8-dev:arm64. 1815s Preparing to unpack .../061-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 1815s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 1815s Selecting previously unselected package libjpeg-dev:arm64. 1815s Preparing to unpack .../062-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 1815s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 1815s Selecting previously unselected package libjs-bootstrap. 1815s Preparing to unpack .../063-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 1815s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 1815s Selecting previously unselected package libjs-popper.js. 1815s Preparing to unpack .../064-libjs-popper.js_1.16.1+ds-6_all.deb ... 1815s Unpacking libjs-popper.js (1.16.1+ds-6) ... 1815s Selecting previously unselected package libjs-bootstrap4. 1815s Preparing to unpack .../065-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 1815s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 1815s Selecting previously unselected package libjs-d3. 1815s Preparing to unpack .../066-libjs-d3_3.5.17-4_all.deb ... 1815s Unpacking libjs-d3 (3.5.17-4) ... 1815s Selecting previously unselected package libjs-es5-shim. 1815s Preparing to unpack .../067-libjs-es5-shim_4.6.7-2_all.deb ... 1815s Unpacking libjs-es5-shim (4.6.7-2) ... 1815s Selecting previously unselected package libjs-highlight.js. 1815s Preparing to unpack .../068-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 1815s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 1815s Selecting previously unselected package libjs-jquery. 1815s Preparing to unpack .../069-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1815s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1815s Selecting previously unselected package libjs-jquery-datatables. 1815s Preparing to unpack .../070-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 1815s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 1816s Selecting previously unselected package libjs-sifter.js. 1816s Preparing to unpack .../071-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 1816s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 1816s Selecting previously unselected package libjs-microplugin.js. 1816s Preparing to unpack .../072-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 1816s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 1816s Selecting previously unselected package libjs-jquery-selectize.js. 1816s Preparing to unpack .../073-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 1816s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1816s Selecting previously unselected package libjs-jquery-ui. 1816s Preparing to unpack .../074-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1816s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1816s Selecting previously unselected package libjs-json. 1816s Preparing to unpack .../075-libjs-json_0~20221030+~1.0.8-1_all.deb ... 1816s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 1816s Selecting previously unselected package libjs-prettify. 1816s Preparing to unpack .../076-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 1816s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 1816s Selecting previously unselected package liblapack3:arm64. 1816s Preparing to unpack .../077-liblapack3_3.12.1-2_arm64.deb ... 1816s Unpacking liblapack3:arm64 (3.12.1-2) ... 1816s Selecting previously unselected package liblapack-dev:arm64. 1816s Preparing to unpack .../078-liblapack-dev_3.12.1-2_arm64.deb ... 1816s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 1816s Selecting previously unselected package liblerc4:arm64. 1816s Preparing to unpack .../079-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 1816s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 1816s Selecting previously unselected package liblua5.4-0:arm64. 1816s Preparing to unpack .../080-liblua5.4-0_5.4.7-1_arm64.deb ... 1816s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 1816s Selecting previously unselected package libncurses-dev:arm64. 1816s Preparing to unpack .../081-libncurses-dev_6.5+20250216-2_arm64.deb ... 1816s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 1816s Selecting previously unselected package libthai-data. 1816s Preparing to unpack .../082-libthai-data_0.1.29-2build1_all.deb ... 1816s Unpacking libthai-data (0.1.29-2build1) ... 1816s Selecting previously unselected package libthai0:arm64. 1816s Preparing to unpack .../083-libthai0_0.1.29-2build1_arm64.deb ... 1816s Unpacking libthai0:arm64 (0.1.29-2build1) ... 1816s Selecting previously unselected package libpango-1.0-0:arm64. 1816s Preparing to unpack .../084-libpango-1.0-0_1.56.2-1_arm64.deb ... 1816s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 1816s Selecting previously unselected package libpangoft2-1.0-0:arm64. 1816s Preparing to unpack .../085-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 1816s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 1816s Selecting previously unselected package libpangocairo-1.0-0:arm64. 1816s Preparing to unpack .../086-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 1816s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 1816s Selecting previously unselected package libpaper2:arm64. 1816s Preparing to unpack .../087-libpaper2_2.2.5-0.3_arm64.deb ... 1816s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 1816s Selecting previously unselected package libpaper-utils. 1816s Preparing to unpack .../088-libpaper-utils_2.2.5-0.3_arm64.deb ... 1816s Unpacking libpaper-utils (2.2.5-0.3) ... 1816s Selecting previously unselected package libpcre2-16-0:arm64. 1816s Preparing to unpack .../089-libpcre2-16-0_10.45-1_arm64.deb ... 1816s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 1816s Selecting previously unselected package libpcre2-32-0:arm64. 1816s Preparing to unpack .../090-libpcre2-32-0_10.45-1_arm64.deb ... 1816s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 1816s Selecting previously unselected package libpcre2-posix3:arm64. 1816s Preparing to unpack .../091-libpcre2-posix3_10.45-1_arm64.deb ... 1816s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 1816s Selecting previously unselected package libpcre2-dev:arm64. 1816s Preparing to unpack .../092-libpcre2-dev_10.45-1_arm64.deb ... 1816s Unpacking libpcre2-dev:arm64 (10.45-1) ... 1817s Selecting previously unselected package libpkgconf3:arm64. 1817s Preparing to unpack .../093-libpkgconf3_1.8.1-4_arm64.deb ... 1817s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 1817s Selecting previously unselected package zlib1g-dev:arm64. 1817s Preparing to unpack .../094-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 1817s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1817s Selecting previously unselected package libpng-dev:arm64. 1817s Preparing to unpack .../095-libpng-dev_1.6.47-1_arm64.deb ... 1817s Unpacking libpng-dev:arm64 (1.6.47-1) ... 1817s Selecting previously unselected package libreadline-dev:arm64. 1817s Preparing to unpack .../096-libreadline-dev_8.2-6_arm64.deb ... 1817s Unpacking libreadline-dev:arm64 (8.2-6) ... 1817s Selecting previously unselected package libsharpyuv0:arm64. 1817s Preparing to unpack .../097-libsharpyuv0_1.5.0-0.1_arm64.deb ... 1817s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 1817s Selecting previously unselected package libsm6:arm64. 1817s Preparing to unpack .../098-libsm6_2%3a1.2.4-1_arm64.deb ... 1817s Unpacking libsm6:arm64 (2:1.2.4-1) ... 1817s Selecting previously unselected package libtcl8.6:arm64. 1817s Preparing to unpack .../099-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 1817s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 1817s Selecting previously unselected package libjbig0:arm64. 1817s Preparing to unpack .../100-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 1817s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 1817s Selecting previously unselected package libwebp7:arm64. 1817s Preparing to unpack .../101-libwebp7_1.5.0-0.1_arm64.deb ... 1817s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 1817s Selecting previously unselected package libtiff6:arm64. 1817s Preparing to unpack .../102-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 1817s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 1817s Selecting previously unselected package libxft2:arm64. 1817s Preparing to unpack .../103-libxft2_2.3.6-1build1_arm64.deb ... 1817s Unpacking libxft2:arm64 (2.3.6-1build1) ... 1817s Selecting previously unselected package libxss1:arm64. 1817s Preparing to unpack .../104-libxss1_1%3a1.2.3-1build3_arm64.deb ... 1817s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 1817s Selecting previously unselected package libtk8.6:arm64. 1817s Preparing to unpack .../105-libtk8.6_8.6.16-1_arm64.deb ... 1817s Unpacking libtk8.6:arm64 (8.6.16-1) ... 1817s Selecting previously unselected package libxt6t64:arm64. 1817s Preparing to unpack .../106-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 1817s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 1817s Selecting previously unselected package zip. 1817s Preparing to unpack .../107-zip_3.0-14ubuntu2_arm64.deb ... 1817s Unpacking zip (3.0-14ubuntu2) ... 1817s Selecting previously unselected package unzip. 1817s Preparing to unpack .../108-unzip_6.0-28ubuntu6_arm64.deb ... 1817s Unpacking unzip (6.0-28ubuntu6) ... 1817s Selecting previously unselected package xdg-utils. 1817s Preparing to unpack .../109-xdg-utils_1.2.1-2ubuntu1_all.deb ... 1817s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 1817s Selecting previously unselected package r-base-core. 1817s Preparing to unpack .../110-r-base-core_4.4.3-1_arm64.deb ... 1817s Unpacking r-base-core (4.4.3-1) ... 1818s Selecting previously unselected package r-cran-littler. 1818s Preparing to unpack .../111-r-cran-littler_0.3.20-2_arm64.deb ... 1818s Unpacking r-cran-littler (0.3.20-2) ... 1818s Selecting previously unselected package littler. 1818s Preparing to unpack .../112-littler_0.3.20-2_all.deb ... 1818s Unpacking littler (0.3.20-2) ... 1818s Selecting previously unselected package node-bootstrap-sass. 1818s Preparing to unpack .../113-node-bootstrap-sass_3.4.3-2_all.deb ... 1818s Unpacking node-bootstrap-sass (3.4.3-2) ... 1818s Selecting previously unselected package node-html5shiv. 1818s Preparing to unpack .../114-node-html5shiv_3.7.3+dfsg-5_all.deb ... 1818s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 1818s Selecting previously unselected package node-normalize.css. 1818s Preparing to unpack .../115-node-normalize.css_8.0.1-5_all.deb ... 1818s Unpacking node-normalize.css (8.0.1-5) ... 1818s Selecting previously unselected package pandoc-data. 1818s Preparing to unpack .../116-pandoc-data_3.1.11.1-3build1_all.deb ... 1818s Unpacking pandoc-data (3.1.11.1-3build1) ... 1818s Selecting previously unselected package pandoc. 1818s Preparing to unpack .../117-pandoc_3.1.11.1+ds-2_arm64.deb ... 1818s Unpacking pandoc (3.1.11.1+ds-2) ... 1819s Selecting previously unselected package liblzma-dev:arm64. 1819s Preparing to unpack .../118-liblzma-dev_5.6.4-1_arm64.deb ... 1819s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 1819s Selecting previously unselected package pkgconf-bin. 1819s Preparing to unpack .../119-pkgconf-bin_1.8.1-4_arm64.deb ... 1819s Unpacking pkgconf-bin (1.8.1-4) ... 1819s Selecting previously unselected package pkgconf:arm64. 1819s Preparing to unpack .../120-pkgconf_1.8.1-4_arm64.deb ... 1819s Unpacking pkgconf:arm64 (1.8.1-4) ... 1819s Selecting previously unselected package libtirpc-dev:arm64. 1819s Preparing to unpack .../121-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 1819s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 1819s Selecting previously unselected package r-base-dev. 1819s Preparing to unpack .../122-r-base-dev_4.4.3-1_all.deb ... 1819s Unpacking r-base-dev (4.4.3-1) ... 1819s Selecting previously unselected package pkg-r-autopkgtest. 1819s Preparing to unpack .../123-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 1819s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 1819s Selecting previously unselected package r-cran-base64enc. 1819s Preparing to unpack .../124-r-cran-base64enc_0.1-3-3_arm64.deb ... 1819s Unpacking r-cran-base64enc (0.1-3-3) ... 1819s Selecting previously unselected package r-cran-brio. 1819s Preparing to unpack .../125-r-cran-brio_1.1.5-1_arm64.deb ... 1819s Unpacking r-cran-brio (1.1.5-1) ... 1819s Selecting previously unselected package r-cran-rlang. 1819s Preparing to unpack .../126-r-cran-rlang_1.1.5-1_arm64.deb ... 1819s Unpacking r-cran-rlang (1.1.5-1) ... 1819s Selecting previously unselected package r-cran-fastmap. 1819s Preparing to unpack .../127-r-cran-fastmap_1.2.0-1_arm64.deb ... 1819s Unpacking r-cran-fastmap (1.2.0-1) ... 1819s Selecting previously unselected package r-cran-cachem. 1819s Preparing to unpack .../128-r-cran-cachem_1.1.0-1_arm64.deb ... 1819s Unpacking r-cran-cachem (1.1.0-1) ... 1819s Selecting previously unselected package r-cran-digest. 1819s Preparing to unpack .../129-r-cran-digest_0.6.37-1_arm64.deb ... 1819s Unpacking r-cran-digest (0.6.37-1) ... 1819s Selecting previously unselected package r-cran-htmltools. 1819s Preparing to unpack .../130-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 1819s Unpacking r-cran-htmltools (0.5.8.1-1) ... 1819s Selecting previously unselected package r-cran-jquerylib. 1819s Preparing to unpack .../131-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 1819s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 1819s Selecting previously unselected package r-cran-jsonlite. 1819s Preparing to unpack .../132-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 1819s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 1819s Selecting previously unselected package r-cran-cli. 1819s Preparing to unpack .../133-r-cran-cli_3.6.4-1_arm64.deb ... 1819s Unpacking r-cran-cli (3.6.4-1) ... 1819s Selecting previously unselected package r-cran-glue. 1820s Preparing to unpack .../134-r-cran-glue_1.8.0-1_arm64.deb ... 1820s Unpacking r-cran-glue (1.8.0-1) ... 1820s Selecting previously unselected package r-cran-lifecycle. 1820s Preparing to unpack .../135-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 1820s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 1820s Selecting previously unselected package r-cran-memoise. 1820s Preparing to unpack .../136-r-cran-memoise_2.0.1-1_all.deb ... 1820s Unpacking r-cran-memoise (2.0.1-1) ... 1820s Selecting previously unselected package r-cran-mime. 1820s Preparing to unpack .../137-r-cran-mime_0.12-2_arm64.deb ... 1820s Unpacking r-cran-mime (0.12-2) ... 1820s Selecting previously unselected package r-cran-fs. 1820s Preparing to unpack .../138-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 1820s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 1820s Selecting previously unselected package r-cran-r6. 1820s Preparing to unpack .../139-r-cran-r6_2.6.1-1_all.deb ... 1820s Unpacking r-cran-r6 (2.6.1-1) ... 1820s Selecting previously unselected package r-cran-rappdirs. 1820s Preparing to unpack .../140-r-cran-rappdirs_0.3.3-1_arm64.deb ... 1820s Unpacking r-cran-rappdirs (0.3.3-1) ... 1820s Selecting previously unselected package r-cran-sass. 1820s Preparing to unpack .../141-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 1820s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 1820s Selecting previously unselected package r-cran-bslib. 1820s Preparing to unpack .../142-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 1820s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 1820s Selecting previously unselected package r-cran-ps. 1820s Preparing to unpack .../143-r-cran-ps_1.9.0-1_arm64.deb ... 1820s Unpacking r-cran-ps (1.9.0-1) ... 1820s Selecting previously unselected package r-cran-processx. 1820s Preparing to unpack .../144-r-cran-processx_3.8.6-1_arm64.deb ... 1820s Unpacking r-cran-processx (3.8.6-1) ... 1820s Selecting previously unselected package r-cran-callr. 1820s Preparing to unpack .../145-r-cran-callr_3.7.6-1_all.deb ... 1820s Unpacking r-cran-callr (3.7.6-1) ... 1820s Selecting previously unselected package r-cran-commonmark. 1820s Preparing to unpack .../146-r-cran-commonmark_1.9.2-2_arm64.deb ... 1820s Unpacking r-cran-commonmark (1.9.2-2) ... 1820s Selecting previously unselected package r-cran-crayon. 1820s Preparing to unpack .../147-r-cran-crayon_1.5.3-1_all.deb ... 1820s Unpacking r-cran-crayon (1.5.3-1) ... 1820s Selecting previously unselected package r-cran-desc. 1820s Preparing to unpack .../148-r-cran-desc_1.4.3-1_all.deb ... 1820s Unpacking r-cran-desc (1.4.3-1) ... 1820s Selecting previously unselected package r-cran-diffobj. 1820s Preparing to unpack .../149-r-cran-diffobj_0.3.5-1_arm64.deb ... 1820s Unpacking r-cran-diffobj (0.3.5-1) ... 1820s Selecting previously unselected package r-cran-dotcall64. 1820s Preparing to unpack .../150-r-cran-dotcall64_1.2-1_arm64.deb ... 1820s Unpacking r-cran-dotcall64 (1.2-1) ... 1820s Selecting previously unselected package r-cran-evaluate. 1820s Preparing to unpack .../151-r-cran-evaluate_1.0.3-1_all.deb ... 1820s Unpacking r-cran-evaluate (1.0.3-1) ... 1820s Selecting previously unselected package r-cran-evd. 1820s Preparing to unpack .../152-r-cran-evd_2.3-7.1-1_arm64.deb ... 1820s Unpacking r-cran-evd (2.3-7.1-1) ... 1820s Selecting previously unselected package r-cran-pkgkitten. 1820s Preparing to unpack .../153-r-cran-pkgkitten_0.2.4-1_all.deb ... 1820s Unpacking r-cran-pkgkitten (0.2.4-1) ... 1820s Selecting previously unselected package r-cran-rcpp. 1820s Preparing to unpack .../154-r-cran-rcpp_1.0.14-1_arm64.deb ... 1820s Unpacking r-cran-rcpp (1.0.14-1) ... 1821s Selecting previously unselected package r-cran-spam. 1821s Preparing to unpack .../155-r-cran-spam_2.11-1-1_arm64.deb ... 1821s Unpacking r-cran-spam (2.11-1-1) ... 1821s Selecting previously unselected package r-cran-viridislite. 1821s Preparing to unpack .../156-r-cran-viridislite_0.4.2-2_all.deb ... 1821s Unpacking r-cran-viridislite (0.4.2-2) ... 1821s Selecting previously unselected package r-cran-maps. 1821s Preparing to unpack .../157-r-cran-maps_3.4.2.1-1_arm64.deb ... 1821s Unpacking r-cran-maps (3.4.2.1-1) ... 1821s Selecting previously unselected package r-cran-fields. 1821s Preparing to unpack .../158-r-cran-fields_16.3.1-1_arm64.deb ... 1821s Unpacking r-cran-fields (16.3.1-1) ... 1821s Selecting previously unselected package r-cran-fontawesome. 1821s Preparing to unpack .../159-r-cran-fontawesome_0.5.3-1_all.deb ... 1821s Unpacking r-cran-fontawesome (0.5.3-1) ... 1821s Selecting previously unselected package r-cran-xfun. 1821s Preparing to unpack .../160-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 1821s Unpacking r-cran-xfun (0.51+dfsg-1) ... 1821s Selecting previously unselected package r-cran-highr. 1821s Preparing to unpack .../161-r-cran-highr_0.11+dfsg-1_all.deb ... 1821s Unpacking r-cran-highr (0.11+dfsg-1) ... 1821s Selecting previously unselected package r-cran-later. 1821s Preparing to unpack .../162-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 1821s Unpacking r-cran-later (1.4.1+dfsg-1) ... 1821s Selecting previously unselected package r-cran-magrittr. 1821s Preparing to unpack .../163-r-cran-magrittr_2.0.3-1_arm64.deb ... 1821s Unpacking r-cran-magrittr (2.0.3-1) ... 1821s Selecting previously unselected package r-cran-promises. 1821s Preparing to unpack .../164-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 1821s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 1821s Selecting previously unselected package r-cran-httpuv. 1821s Preparing to unpack .../165-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 1821s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 1821s Selecting previously unselected package r-cran-yaml. 1821s Preparing to unpack .../166-r-cran-yaml_2.3.10-1_arm64.deb ... 1821s Unpacking r-cran-yaml (2.3.10-1) ... 1821s Selecting previously unselected package libjs-mathjax. 1821s Preparing to unpack .../167-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1821s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1822s Selecting previously unselected package r-cran-knitr. 1822s Preparing to unpack .../168-r-cran-knitr_1.49+dfsg-1_all.deb ... 1822s Unpacking r-cran-knitr (1.49+dfsg-1) ... 1822s Selecting previously unselected package r-cran-lattice. 1822s Preparing to unpack .../169-r-cran-lattice_0.22-6-1_arm64.deb ... 1822s Unpacking r-cran-lattice (0.22-6-1) ... 1822s Selecting previously unselected package r-cran-matrix. 1822s Preparing to unpack .../170-r-cran-matrix_1.7-3-1_arm64.deb ... 1822s Unpacking r-cran-matrix (1.7-3-1) ... 1822s Selecting previously unselected package r-cran-pkgbuild. 1822s Preparing to unpack .../171-r-cran-pkgbuild_1.4.6-1_all.deb ... 1822s Unpacking r-cran-pkgbuild (1.4.6-1) ... 1822s Selecting previously unselected package r-cran-rprojroot. 1822s Preparing to unpack .../172-r-cran-rprojroot_2.0.4-2_all.deb ... 1822s Unpacking r-cran-rprojroot (2.0.4-2) ... 1822s Selecting previously unselected package r-cran-withr. 1822s Preparing to unpack .../173-r-cran-withr_3.0.2+dfsg-1_all.deb ... 1822s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 1822s Selecting previously unselected package r-cran-pkgload. 1822s Preparing to unpack .../174-r-cran-pkgload_1.4.0-1_all.deb ... 1822s Unpacking r-cran-pkgload (1.4.0-1) ... 1822s Selecting previously unselected package r-cran-praise. 1822s Preparing to unpack .../175-r-cran-praise_1.0.0-4build1_all.deb ... 1822s Unpacking r-cran-praise (1.0.0-4build1) ... 1822s Selecting previously unselected package r-cran-tinytex. 1822s Preparing to unpack .../176-r-cran-tinytex_0.56-1_all.deb ... 1822s Unpacking r-cran-tinytex (0.56-1) ... 1822s Selecting previously unselected package libjs-modernizr. 1822s Preparing to unpack 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(2.7.9+dfsg-1) ... 1823s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 1823s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 1823s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 1823s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 1823s Setting up libjs-popper.js (1.16.1+ds-6) ... 1823s Setting up libxcb-render0:arm64 (1.17.0-2) ... 1823s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 1823s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1823s Setting up unzip (6.0-28ubuntu6) ... 1823s Setting up x11-common (1:7.7+23ubuntu3) ... 1823s Setting up node-html5shiv (3.7.3+dfsg-5) ... 1823s Setting up libdeflate0:arm64 (1.23-1) ... 1823s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 1823s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 1823s Setting up libreadline-dev:arm64 (8.2-6) ... 1823s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up libjs-modernizr (3.13.0-0.1) ... 1823s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 1823s Setting up libpcre2-16-0:arm64 (10.45-1) ... 1823s Setting up libjs-es5-shim (4.6.7-2) ... 1823s Setting up zip (3.0-14ubuntu2) ... 1823s Setting up libpcre2-32-0:arm64 (10.45-1) ... 1823s Setting up libblas3:arm64 (3.12.1-2) ... 1823s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 1823s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 1823s Setting up libpkgconf3:arm64 (1.8.1-4) ... 1823s Setting up libjs-d3 (3.5.17-4) ... 1823s Setting up fonts-dejavu-mono (2.37-8) ... 1823s Setting up libmpc3:arm64 (1.3.1-1build2) ... 1823s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 1823s Setting up icu-devtools (76.1-1ubuntu2) ... 1823s Setting up fonts-dejavu-core (2.37-8) ... 1823s Setting up pkgconf-bin (1.8.1-4) ... 1823s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 1823s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up libwebp7:arm64 (1.5.0-0.1) ... 1823s Setting up liblzma-dev:arm64 (5.6.4-1) ... 1823s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1823s Setting up libpcre2-posix3:arm64 (10.45-1) ... 1823s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 1823s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up liblua5.4-0:arm64 (5.4.7-1) ... 1823s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 1823s Setting up libthai-data (0.1.29-2build1) ... 1823s Setting up node-bootstrap-sass (3.4.3-2) ... 1823s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 1823s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 1823s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 1823s Setting up libpaper2:arm64 (2.2.5-0.3) ... 1823s Setting up pandoc-data (3.1.11.1-3build1) ... 1823s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1823s Setting up libisl23:arm64 (0.27-1) ... 1823s Setting up libdeflate-dev:arm64 (1.23-1) ... 1823s Setting up node-normalize.css (8.0.1-5) ... 1823s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 1823s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1823s Setting up xdg-utils (1.2.1-2ubuntu1) ... 1823s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 1823s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up libblas-dev:arm64 (3.12.1-2) ... 1823s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 1823s Setting up dctrl-tools (2.24-3build3) ... 1823s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 1823s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 1823s Setting up libbz2-dev:arm64 (1.0.8-6) ... 1823s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 1823s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 1823s Setting up libice6:arm64 (2:1.1.1-1) ... 1823s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 1823s Setting up liblapack3:arm64 (3.12.1-2) ... 1823s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 1823s Setting up libpcre2-dev:arm64 (10.45-1) ... 1823s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 1823s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 1823s Setting up libpng-dev:arm64 (1.6.47-1) ... 1823s Setting up libpaper-utils (2.2.5-0.3) ... 1823s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 1823s Setting up pkgconf:arm64 (1.8.1-4) ... 1823s Setting up libthai0:arm64 (0.1.29-2build1) ... 1823s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1823s Setting up pandoc (3.1.11.1+ds-2) ... 1823s Setting up liblapack-dev:arm64 (3.12.1-2) ... 1823s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 1823s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 1823s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 1823s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 1823s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 1823s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 1823s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 1823s Setting up libsm6:arm64 (2:1.2.4-1) ... 1823s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 1823s Setting up fontconfig (2.15.0-2ubuntu1) ... 1826s Regenerating fonts cache... done. 1826s Setting up libxft2:arm64 (2.3.6-1build1) ... 1826s Setting up libtk8.6:arm64 (8.6.16-1) ... 1826s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 1826s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 1826s Setting up libcairo2:arm64 (1.18.2-2) ... 1826s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1826s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 1826s Setting up cpp-14 (14.2.0-17ubuntu3) ... 1826s Setting up cpp (4:14.2.0-1ubuntu1) ... 1826s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 1826s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 1826s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 1826s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1826s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 1826s Setting up gcc-14 (14.2.0-17ubuntu3) ... 1826s Setting up r-base-core (4.4.3-1) ... 1826s Creating config file /etc/R/Renviron with new version 1826s Setting up r-cran-crayon (1.5.3-1) ... 1826s Setting up r-cran-sourcetools (0.1.7-1-1) ... 1826s Setting up r-cran-lattice (0.22-6-1) ... 1826s Setting up r-cran-ps (1.9.0-1) ... 1826s Setting up r-cran-viridislite (0.4.2-2) ... 1826s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 1826s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1826s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 1826s Setting up r-cran-commonmark (1.9.2-2) ... 1826s Setting up g++-14 (14.2.0-17ubuntu3) ... 1826s Setting up r-cran-r6 (2.6.1-1) ... 1826s Setting up r-cran-pkgkitten (0.2.4-1) ... 1826s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 1826s Setting up r-cran-magrittr (2.0.3-1) ... 1826s Setting up r-cran-rappdirs (0.3.3-1) ... 1826s Setting up r-cran-evd (2.3-7.1-1) ... 1826s Setting up r-cran-littler (0.3.20-2) ... 1826s Setting up r-cran-fs (1.6.5+dfsg-1) ... 1826s Setting up r-cran-rcpp (1.0.14-1) ... 1826s Setting up r-cran-brio (1.1.5-1) ... 1826s Setting up r-cran-diffobj (0.3.5-1) ... 1826s Setting up r-cran-maps (3.4.2.1-1) ... 1826s Setting up r-cran-rlang (1.1.5-1) ... 1826s Setting up littler (0.3.20-2) ... 1826s Setting up r-cran-xfun (0.51+dfsg-1) ... 1826s Setting up r-cran-withr (3.0.2+dfsg-1) ... 1826s Setting up r-cran-processx (3.8.6-1) ... 1826s Setting up r-cran-mime (0.12-2) ... 1826s Setting up r-cran-praise (1.0.0-4build1) ... 1826s Setting up r-cran-base64enc (0.1-3-3) ... 1826s Setting up r-cran-digest (0.6.37-1) ... 1826s Setting up r-cran-yaml (2.3.10-1) ... 1826s Setting up r-cran-evaluate (1.0.3-1) ... 1826s Setting up r-cran-highr (0.11+dfsg-1) ... 1826s Setting up r-cran-truncdist (1.0-2-4build1) ... 1826s Setting up r-cran-glue (1.8.0-1) ... 1826s Setting up r-cran-xtable (1:1.8-4-2) ... 1826s Setting up r-cran-cli (3.6.4-1) ... 1826s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 1826s Setting up r-cran-dotcall64 (1.2-1) ... 1826s Setting up r-cran-rprojroot (2.0.4-2) ... 1826s Setting up gcc (4:14.2.0-1ubuntu1) ... 1826s Setting up r-cran-fastmap (1.2.0-1) ... 1826s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 1826s Setting up r-cran-waldo (0.6.1-2) ... 1826s Setting up r-cran-later (1.4.1+dfsg-1) ... 1826s Setting up r-cran-matrix (1.7-3-1) ... 1826s Setting up r-cran-htmltools (0.5.8.1-1) ... 1826s Setting up r-cran-tinytex (0.56-1) ... 1826s Setting up r-cran-knitr (1.49+dfsg-1) ... 1826s Setting up g++ (4:14.2.0-1ubuntu1) ... 1826s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1826s Setting up r-cran-cachem (1.1.0-1) ... 1826s Setting up r-cran-sass (0.4.9+dfsg-1) ... 1826s Setting up build-essential (12.10ubuntu1) ... 1826s Setting up r-cran-spam (2.11-1-1) ... 1826s Setting up r-cran-fields (16.3.1-1) ... 1826s Setting up r-cran-callr (3.7.6-1) ... 1826s Setting up r-cran-desc (1.4.3-1) ... 1826s Setting up r-cran-fontawesome (0.5.3-1) ... 1826s Setting up gfortran (4:14.2.0-1ubuntu1) ... 1826s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 1826s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 1826s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 1826s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 1826s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 1826s Setting up r-cran-memoise (2.0.1-1) ... 1826s Setting up r-cran-promises (1.3.2+dfsg-1) ... 1826s Setting up r-cran-pkgbuild (1.4.6-1) ... 1826s Setting up r-cran-pkgload (1.4.0-1) ... 1826s Setting up r-base-dev (4.4.3-1) ... 1826s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 1826s Setting up r-cran-testthat (3.2.3-1) ... 1826s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 1826s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 1826s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 1826s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 1826s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1826s Processing triggers for man-db (2.13.0-1) ... 1828s Processing triggers for install-info (7.1.1-1) ... 1830s autopkgtest [16:27:16]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 1830s autopkgtest [16:27:16]: test pkg-r-autopkgtest: [----------------------- 1830s Test: Try to load the R library spam 1830s 1830s R version 4.4.3 (2025-02-28) -- "Trophy Case" 1830s Copyright (C) 2025 The R Foundation for Statistical Computing 1830s Platform: aarch64-unknown-linux-gnu 1830s 1830s R is free software and comes with ABSOLUTELY NO WARRANTY. 1830s You are welcome to redistribute it under certain conditions. 1830s Type 'license()' or 'licence()' for distribution details. 1830s 1830s R is a collaborative project with many contributors. 1830s Type 'contributors()' for more information and 1830s 'citation()' on how to cite R or R packages in publications. 1830s 1830s Type 'demo()' for some demos, 'help()' for on-line help, or 1830s 'help.start()' for an HTML browser interface to help. 1830s Type 'q()' to quit R. 1830s 1831s > library('spam') 1831s Spam version 2.11-1 (2025-01-20) is loaded. 1831s Type 'help( Spam)' or 'demo( spam)' for a short introduction 1831s and overview of this package. 1831s Help for individual functions is also obtained by adding the 1831s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 1831s 1831s Attaching package: ‘spam’ 1831s 1831s The following objects are masked from ‘package:base’: 1831s 1831s backsolve, forwardsolve 1831s 1831s > 1831s > 1831s Other tests are currently unsupported! 1831s They will be progressively added. 1831s autopkgtest [16:27:17]: test pkg-r-autopkgtest: -----------------------] 1832s pkg-r-autopkgtest PASS 1832s autopkgtest [16:27:18]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 1832s autopkgtest [16:27:18]: @@@@@@@@@@@@@@@@@@@@ summary 1832s run-unit-test PASS 1832s pkg-r-autopkgtest PASS 1849s nova [W] Using flock in prodstack6-arm64 1849s Creating nova instance adt-plucky-arm64-r-cran-spam-20250315-155645-juju-7f2275-prod-proposed-migration-environment-20-43e01230-de53-4615-8011-43bb007e324a from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1849s nova [W] Timed out waiting for c347fdf6-ba1c-4bdc-b9da-b5a388d359e9 to get deleted. 1849s nova [W] Using flock in prodstack6-arm64 1849s Creating nova instance adt-plucky-arm64-r-cran-spam-20250315-155645-juju-7f2275-prod-proposed-migration-environment-20-43e01230-de53-4615-8011-43bb007e324a from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1849s nova [W] nova quota exceeded (attempt #0) 1849s nova [W] Timed out waiting for e4e49e07-15c8-4022-99c4-ceb831873099 to get deleted.