0s autopkgtest [15:54:50]: starting date and time: 2025-03-15 15:54:50+0000 0s autopkgtest [15:54:50]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:54:50]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.27qwh3tv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-sctransform --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-15.secgroup --name adt-plucky-arm64-r-cran-sctransform-20250315-155450-juju-7f2275-prod-proposed-migration-environment-20-7a636e64-a7dd-4c2c-b2dd-ce53fbce2c96 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 179s autopkgtest [15:57:49]: testbed dpkg architecture: arm64 180s autopkgtest [15:57:50]: testbed apt version: 2.9.33 180s autopkgtest [15:57:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 180s autopkgtest [15:57:50]: testbed release detected to be: None 181s autopkgtest [15:57:51]: updating testbed package index (apt update) 181s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 182s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 182s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 182s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 182s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 182s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 182s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 182s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 183s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 183s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 183s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 183s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 183s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 183s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 183s Fetched 1078 kB in 2s (582 kB/s) 184s Reading package lists... 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s Calculating upgrade... 186s Calculating upgrade... 186s The following packages will be upgraded: 186s pinentry-curses python3-jinja2 strace 186s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 647 kB of archives. 186s After this operation, 11.3 kB of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 187s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 187s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 188s Fetched 647 kB in 1s (563 kB/s) 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 188s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 188s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 188s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 188s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 188s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 189s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 189s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 189s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 189s Setting up strace (6.13+ds-1ubuntu1) ... 189s Processing triggers for man-db (2.13.0-1) ... 190s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Solving dependencies... 191s The following packages will be REMOVED: 191s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 191s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 191s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 191s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 191s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 191s After this operation, 267 MB disk space will be freed. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 191s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 191s Removing libpython3.12t64:arm64 (3.12.9-1) ... 191s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 191s Removing libnsl2:arm64 (1.3.0-3build3) ... 191s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 191s Removing libunwind8:arm64 (1.6.2-3.1) ... 191s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 192s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 193s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 193s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 193s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 193s /etc/kernel/postrm.d/initramfs-tools: 193s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 194s /etc/kernel/postrm.d/zz-flash-kernel: 194s flash-kernel: Kernel 6.11.0-8-generic has been removed. 194s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 194s /etc/kernel/postrm.d/zz-update-grub: 194s Sourcing file `/etc/default/grub' 194s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 194s Generating grub configuration file ... 194s Found linux image: /boot/vmlinuz-6.14.0-10-generic 194s Found initrd image: /boot/initrd.img-6.14.0-10-generic 194s Warning: os-prober will not be executed to detect other bootable partitions. 194s Systems on them will not be added to the GRUB boot configuration. 194s Check GRUB_DISABLE_OS_PROBER documentation entry. 194s Adding boot menu entry for UEFI Firmware Settings ... 194s done 195s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s Processing triggers for libc-bin (2.41-1ubuntu1) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 195s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 195s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 195s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s autopkgtest [15:58:05]: upgrading testbed (apt dist-upgrade and autopurge) 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 196s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 196s Starting 2 pkgProblemResolver with broken count: 0 196s Done 197s Entering ResolveByKeep 197s 197s Calculating upgrade... 198s The following packages will be upgraded: 198s libc-bin libc-dev-bin libc6 libc6-dev locales 198s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s Need to get 9530 kB of archives. 198s After this operation, 0 B of additional disk space will be used. 198s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 200s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 204s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 209s Preconfiguring packages ... 209s Fetched 9530 kB in 11s (891 kB/s) 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 209s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc6:arm64 (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc-bin (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 210s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Setting up locales (2.41-1ubuntu2) ... 211s Generating locales (this might take a while)... 213s en_US.UTF-8... done 213s Generation complete. 213s Setting up libc-dev-bin (2.41-1ubuntu2) ... 213s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 213s Processing triggers for man-db (2.13.0-1) ... 214s Processing triggers for systemd (257.3-1ubuntu3) ... 215s Reading package lists... 215s Building dependency tree... 215s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 216s Solving dependencies... 217s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 217s autopkgtest [15:58:27]: rebooting testbed after setup commands that affected boot 240s autopkgtest [15:58:50]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 243s autopkgtest [15:58:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sctransform 246s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-sctransform 0.4.1-1 (dsc) [2408 B] 246s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-sctransform 0.4.1-1 (tar) [198 kB] 246s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-sctransform 0.4.1-1 (diff) [2988 B] 246s gpgv: Signature made Wed Nov 1 07:12:04 2023 UTC 246s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 246s gpgv: issuer "tille@debian.org" 246s gpgv: Can't check signature: No public key 246s dpkg-source: warning: cannot verify inline signature for ./r-cran-sctransform_0.4.1-1.dsc: no acceptable signature found 246s autopkgtest [15:58:56]: testing package r-cran-sctransform version 0.4.1-1 247s autopkgtest [15:58:57]: build not needed 249s autopkgtest [15:58:59]: test run-unit-test: preparing testbed 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 250s Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 251s The following NEW packages will be installed: 251s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 251s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 251s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 251s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 251s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 251s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 251s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 251s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 251s libxft2 libxrender1 libxss1 libxt6t64 littler node-normalize.css r-base-core 251s r-cran-brio r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace 251s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 251s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fs r-cran-future 251s r-cran-future.apply r-cran-generics r-cran-ggplot2 r-cran-globals 251s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-irlba 251s r-cran-isoband r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lattice 251s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mass 251s r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme 251s r-cran-parallelly r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 251s r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx 251s r-cran-ps r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 251s r-cran-reshape2 r-cran-rlang r-cran-rprojroot r-cran-scales 251s r-cran-sctransform r-cran-stringi r-cran-stringr r-cran-testthat 251s r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-viridislite 251s r-cran-waldo r-cran-withr r-cran-xfun r-cran-yaml unzip x11-common xdg-utils 251s zip 252s 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. 252s Need to get 95.6 MB of archives. 252s After this operation, 223 MB of additional disk space will be used. 252s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 253s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 253s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 254s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 254s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 254s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 256s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 256s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 257s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 257s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 257s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 257s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 257s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 257s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 257s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 258s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 258s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 258s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 258s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 258s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 258s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 259s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 259s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 259s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 259s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 259s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 260s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 262s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 262s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 263s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 263s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 263s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 263s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 263s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 263s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 263s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 263s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 263s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 264s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 264s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 264s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 265s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 265s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 265s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 266s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 266s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 266s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 266s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 266s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 296s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 296s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 296s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 296s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 296s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 297s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 297s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 297s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 298s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 299s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 299s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 301s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 301s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 302s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 303s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 303s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 303s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 303s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 305s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 305s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 306s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 306s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 307s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 308s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 308s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 308s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 309s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 309s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 309s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 311s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 311s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 313s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 313s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-globals all 0.16.3-1 [120 kB] 314s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 314s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-parallelly arm64 1.42.0-1 [540 kB] 314s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 315s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 315s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 315s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 317s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 318s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 320s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 323s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 328s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 331s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 331s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 332s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 332s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 333s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 334s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 338s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 340s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 341s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 341s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-irlba arm64 2.3.5.1-4 [295 kB] 341s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 342s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 342s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 352s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 353s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 354s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 354s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 355s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 355s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 355s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 358s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 360s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 360s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.3-1-1 [843 kB] 361s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 363s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 363s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 363s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sctransform arm64 0.4.1-1 [496 kB] 364s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 364s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 368s Preconfiguring packages ... 368s Fetched 95.6 MB in 1min 55s (829 kB/s) 368s Selecting previously unselected package fonts-dejavu-mono. 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 369s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 369s Unpacking fonts-dejavu-mono (2.37-8) ... 369s Selecting previously unselected package fonts-dejavu-core. 369s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 369s Unpacking fonts-dejavu-core (2.37-8) ... 369s Selecting previously unselected package fontconfig-config. 369s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 370s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 370s Selecting previously unselected package libfontconfig1:arm64. 370s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 370s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 370s Selecting previously unselected package fontconfig. 370s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 370s Unpacking fontconfig (2.15.0-2ubuntu1) ... 370s Selecting previously unselected package fonts-glyphicons-halflings. 370s Preparing to unpack .../005-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 370s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 370s Selecting previously unselected package fonts-mathjax. 370s Preparing to unpack .../006-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 370s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 371s Selecting previously unselected package libblas3:arm64. 371s Preparing to unpack .../007-libblas3_3.12.1-2_arm64.deb ... 371s Unpacking libblas3:arm64 (3.12.1-2) ... 371s Selecting previously unselected package libpixman-1-0:arm64. 371s Preparing to unpack .../008-libpixman-1-0_0.44.0-3_arm64.deb ... 371s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 371s Selecting previously unselected package libxcb-render0:arm64. 371s Preparing to unpack .../009-libxcb-render0_1.17.0-2_arm64.deb ... 371s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 371s Selecting previously unselected package libxcb-shm0:arm64. 371s Preparing to unpack .../010-libxcb-shm0_1.17.0-2_arm64.deb ... 371s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 371s Selecting previously unselected package libxrender1:arm64. 371s Preparing to unpack .../011-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 371s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 371s Selecting previously unselected package libcairo2:arm64. 371s Preparing to unpack .../012-libcairo2_1.18.2-2_arm64.deb ... 371s Unpacking libcairo2:arm64 (1.18.2-2) ... 371s Selecting previously unselected package libdatrie1:arm64. 371s Preparing to unpack .../013-libdatrie1_0.2.13-3build1_arm64.deb ... 371s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 371s Selecting previously unselected package libdeflate0:arm64. 371s Preparing to unpack .../014-libdeflate0_1.23-1_arm64.deb ... 371s Unpacking libdeflate0:arm64 (1.23-1) ... 371s Selecting previously unselected package libgfortran5:arm64. 371s Preparing to unpack .../015-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 371s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 372s Selecting previously unselected package libgomp1:arm64. 372s Preparing to unpack .../016-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 372s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 372s Selecting previously unselected package libgraphite2-3:arm64. 372s Preparing to unpack .../017-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 372s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 372s Selecting previously unselected package libharfbuzz0b:arm64. 372s Preparing to unpack .../018-libharfbuzz0b_10.2.0-1_arm64.deb ... 372s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 372s Selecting previously unselected package x11-common. 372s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu3_all.deb ... 372s Unpacking x11-common (1:7.7+23ubuntu3) ... 372s Selecting previously unselected package libice6:arm64. 372s Preparing to unpack .../020-libice6_2%3a1.1.1-1_arm64.deb ... 372s Unpacking libice6:arm64 (2:1.1.1-1) ... 372s Selecting previously unselected package libjpeg-turbo8:arm64. 372s Preparing to unpack .../021-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 372s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 372s Selecting previously unselected package libjpeg8:arm64. 372s Preparing to unpack .../022-libjpeg8_8c-2ubuntu11_arm64.deb ... 372s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 372s Selecting previously unselected package libjs-bootstrap. 372s Preparing to unpack .../023-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 372s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 372s Selecting previously unselected package libjs-highlight.js. 372s Preparing to unpack .../024-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 372s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 372s Selecting previously unselected package libjs-jquery. 372s Preparing to unpack .../025-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 372s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 373s Selecting previously unselected package libjs-jquery-datatables. 373s Preparing to unpack .../026-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 373s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 373s Selecting previously unselected package liblapack3:arm64. 373s Preparing to unpack .../027-liblapack3_3.12.1-2_arm64.deb ... 373s Unpacking liblapack3:arm64 (3.12.1-2) ... 373s Selecting previously unselected package liblerc4:arm64. 373s Preparing to unpack .../028-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 373s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 373s Selecting previously unselected package libthai-data. 373s Preparing to unpack .../029-libthai-data_0.1.29-2build1_all.deb ... 373s Unpacking libthai-data (0.1.29-2build1) ... 373s Selecting previously unselected package libthai0:arm64. 373s Preparing to unpack .../030-libthai0_0.1.29-2build1_arm64.deb ... 373s Unpacking libthai0:arm64 (0.1.29-2build1) ... 373s Selecting previously unselected package libpango-1.0-0:arm64. 373s Preparing to unpack .../031-libpango-1.0-0_1.56.2-1_arm64.deb ... 373s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 373s Selecting previously unselected package libpangoft2-1.0-0:arm64. 373s Preparing to unpack .../032-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 373s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 373s Selecting previously unselected package libpangocairo-1.0-0:arm64. 373s Preparing to unpack .../033-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 373s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 373s Selecting previously unselected package libpaper2:arm64. 373s Preparing to unpack .../034-libpaper2_2.2.5-0.3_arm64.deb ... 373s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 374s Selecting previously unselected package libpaper-utils. 374s Preparing to unpack .../035-libpaper-utils_2.2.5-0.3_arm64.deb ... 374s Unpacking libpaper-utils (2.2.5-0.3) ... 374s Selecting previously unselected package libsharpyuv0:arm64. 374s Preparing to unpack .../036-libsharpyuv0_1.5.0-0.1_arm64.deb ... 374s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 374s Selecting previously unselected package libsm6:arm64. 374s Preparing to unpack .../037-libsm6_2%3a1.2.4-1_arm64.deb ... 374s Unpacking libsm6:arm64 (2:1.2.4-1) ... 374s Selecting previously unselected package libtcl8.6:arm64. 374s Preparing to unpack .../038-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 374s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 374s Selecting previously unselected package libjbig0:arm64. 374s Preparing to unpack .../039-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 374s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 374s Selecting previously unselected package libwebp7:arm64. 374s Preparing to unpack .../040-libwebp7_1.5.0-0.1_arm64.deb ... 374s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 374s Selecting previously unselected package libtiff6:arm64. 374s Preparing to unpack .../041-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 374s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 374s Selecting previously unselected package libxft2:arm64. 374s Preparing to unpack .../042-libxft2_2.3.6-1build1_arm64.deb ... 374s Unpacking libxft2:arm64 (2.3.6-1build1) ... 374s Selecting previously unselected package libxss1:arm64. 374s Preparing to unpack .../043-libxss1_1%3a1.2.3-1build3_arm64.deb ... 374s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 374s Selecting previously unselected package libtk8.6:arm64. 374s Preparing to unpack .../044-libtk8.6_8.6.16-1_arm64.deb ... 374s Unpacking libtk8.6:arm64 (8.6.16-1) ... 375s Selecting previously unselected package libxt6t64:arm64. 375s Preparing to unpack .../045-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 375s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 375s Selecting previously unselected package zip. 375s Preparing to unpack .../046-zip_3.0-14ubuntu2_arm64.deb ... 375s Unpacking zip (3.0-14ubuntu2) ... 375s Selecting previously unselected package unzip. 375s Preparing to unpack .../047-unzip_6.0-28ubuntu6_arm64.deb ... 375s Unpacking unzip (6.0-28ubuntu6) ... 375s Selecting previously unselected package xdg-utils. 375s Preparing to unpack .../048-xdg-utils_1.2.1-2ubuntu1_all.deb ... 375s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 375s Selecting previously unselected package r-base-core. 375s Preparing to unpack .../049-r-base-core_4.4.3-1_arm64.deb ... 375s Unpacking r-base-core (4.4.3-1) ... 376s Selecting previously unselected package r-cran-littler. 376s Preparing to unpack .../050-r-cran-littler_0.3.20-2_arm64.deb ... 376s Unpacking r-cran-littler (0.3.20-2) ... 376s Selecting previously unselected package littler. 376s Preparing to unpack .../051-littler_0.3.20-2_all.deb ... 376s Unpacking littler (0.3.20-2) ... 376s Selecting previously unselected package node-normalize.css. 376s Preparing to unpack .../052-node-normalize.css_8.0.1-5_all.deb ... 376s Unpacking node-normalize.css (8.0.1-5) ... 376s Selecting previously unselected package r-cran-brio. 376s Preparing to unpack .../053-r-cran-brio_1.1.5-1_arm64.deb ... 376s Unpacking r-cran-brio (1.1.5-1) ... 376s Selecting previously unselected package r-cran-ps. 376s Preparing to unpack .../054-r-cran-ps_1.9.0-1_arm64.deb ... 376s Unpacking r-cran-ps (1.9.0-1) ... 377s Selecting previously unselected package r-cran-r6. 377s Preparing to unpack .../055-r-cran-r6_2.6.1-1_all.deb ... 377s Unpacking r-cran-r6 (2.6.1-1) ... 377s Selecting previously unselected package r-cran-processx. 377s Preparing to unpack .../056-r-cran-processx_3.8.6-1_arm64.deb ... 377s Unpacking r-cran-processx (3.8.6-1) ... 377s Selecting previously unselected package r-cran-callr. 377s Preparing to unpack .../057-r-cran-callr_3.7.6-1_all.deb ... 377s Unpacking r-cran-callr (3.7.6-1) ... 377s Selecting previously unselected package r-cran-cli. 377s Preparing to unpack .../058-r-cran-cli_3.6.4-1_arm64.deb ... 377s Unpacking r-cran-cli (3.6.4-1) ... 377s Selecting previously unselected package r-cran-codetools. 377s Preparing to unpack .../059-r-cran-codetools_0.2-20-1_all.deb ... 377s Unpacking r-cran-codetools (0.2-20-1) ... 377s Selecting previously unselected package r-cran-colorspace. 377s Preparing to unpack .../060-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 377s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 377s Selecting previously unselected package r-cran-crayon. 377s Preparing to unpack .../061-r-cran-crayon_1.5.3-1_all.deb ... 377s Unpacking r-cran-crayon (1.5.3-1) ... 377s Selecting previously unselected package r-cran-desc. 377s Preparing to unpack .../062-r-cran-desc_1.4.3-1_all.deb ... 377s Unpacking r-cran-desc (1.4.3-1) ... 377s Selecting previously unselected package r-cran-diffobj. 377s Preparing to unpack .../063-r-cran-diffobj_0.3.5-1_arm64.deb ... 377s Unpacking r-cran-diffobj (0.3.5-1) ... 378s Selecting previously unselected package r-cran-digest. 378s Preparing to unpack .../064-r-cran-digest_0.6.37-1_arm64.deb ... 378s Unpacking r-cran-digest (0.6.37-1) ... 378s Selecting previously unselected package r-cran-generics. 378s Preparing to unpack .../065-r-cran-generics_0.1.3-1_all.deb ... 378s Unpacking r-cran-generics (0.1.3-1) ... 378s Selecting previously unselected package r-cran-glue. 378s Preparing to unpack .../066-r-cran-glue_1.8.0-1_arm64.deb ... 378s Unpacking r-cran-glue (1.8.0-1) ... 378s Selecting previously unselected package r-cran-rlang. 378s Preparing to unpack .../067-r-cran-rlang_1.1.5-1_arm64.deb ... 378s Unpacking r-cran-rlang (1.1.5-1) ... 378s Selecting previously unselected package r-cran-lifecycle. 378s Preparing to unpack .../068-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 378s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 378s Selecting previously unselected package r-cran-magrittr. 378s Preparing to unpack .../069-r-cran-magrittr_2.0.3-1_arm64.deb ... 378s Unpacking r-cran-magrittr (2.0.3-1) ... 378s Selecting previously unselected package r-cran-utf8. 378s Preparing to unpack .../070-r-cran-utf8_1.2.4-1_arm64.deb ... 378s Unpacking r-cran-utf8 (1.2.4-1) ... 378s Selecting previously unselected package r-cran-vctrs. 378s Preparing to unpack .../071-r-cran-vctrs_0.6.5-1_arm64.deb ... 378s Unpacking r-cran-vctrs (0.6.5-1) ... 379s Selecting previously unselected package r-cran-pillar. 379s Preparing to unpack .../072-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 379s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 379s Selecting previously unselected package r-cran-fansi. 379s Preparing to unpack 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379s Selecting previously unselected package r-cran-evaluate. 379s Preparing to unpack .../079-r-cran-evaluate_1.0.3-1_all.deb ... 379s Unpacking r-cran-evaluate (1.0.3-1) ... 380s Selecting previously unselected package r-cran-farver. 380s Preparing to unpack .../080-r-cran-farver_2.1.2-1_arm64.deb ... 380s Unpacking r-cran-farver (2.1.2-1) ... 380s Selecting previously unselected package r-cran-fs. 380s Preparing to unpack .../081-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 380s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 380s Selecting previously unselected package r-cran-globals. 380s Preparing to unpack .../082-r-cran-globals_0.16.3-1_all.deb ... 380s Unpacking r-cran-globals (0.16.3-1) ... 380s Selecting previously unselected package r-cran-listenv. 380s Preparing to unpack .../083-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 380s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 380s Selecting previously unselected package r-cran-parallelly. 380s Preparing to unpack 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... 381s Selecting previously unselected package r-cran-lattice. 381s Preparing to unpack .../090-r-cran-lattice_0.22-6-1_arm64.deb ... 381s Unpacking r-cran-lattice (0.22-6-1) ... 381s Selecting previously unselected package r-cran-nlme. 381s Preparing to unpack .../091-r-cran-nlme_3.1.167-1_arm64.deb ... 381s Unpacking r-cran-nlme (3.1.167-1) ... 381s Selecting previously unselected package r-cran-matrix. 381s Preparing to unpack .../092-r-cran-matrix_1.7-3-1_arm64.deb ... 381s Unpacking r-cran-matrix (1.7-3-1) ... 381s Selecting previously unselected package r-cran-mgcv. 382s Preparing to unpack .../093-r-cran-mgcv_1.9-1-1_arm64.deb ... 382s Unpacking r-cran-mgcv (1.9-1-1) ... 382s Selecting previously unselected package r-cran-labeling. 382s Preparing to unpack .../094-r-cran-labeling_0.4.3-1_all.deb ... 382s Unpacking r-cran-labeling (0.4.3-1) ... 382s Selecting previously unselected package r-cran-munsell. 382s Preparing to unpack .../095-r-cran-munsell_0.5.1-1_all.deb ... 382s Unpacking r-cran-munsell (0.5.1-1) ... 382s Selecting previously unselected package r-cran-rcolorbrewer. 382s Preparing to unpack .../096-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 382s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 382s Selecting previously unselected package r-cran-viridislite. 382s Preparing to unpack .../097-r-cran-viridislite_0.4.2-2_all.deb ... 382s Unpacking r-cran-viridislite (0.4.2-2) ... 382s Selecting previously unselected package r-cran-scales. 382s Preparing to unpack .../098-r-cran-scales_1.3.0-1_all.deb ... 382s Unpacking r-cran-scales (1.3.0-1) ... 382s Selecting previously unselected package r-cran-ggplot2. 382s Preparing to unpack .../099-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 382s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 382s Selecting previously unselected package r-cran-gridextra. 382s Preparing to unpack .../100-r-cran-gridextra_2.3-3build1_all.deb ... 382s Unpacking r-cran-gridextra (2.3-3build1) ... 383s Selecting previously unselected package r-cran-xfun. 383s Preparing to unpack .../101-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 383s Unpacking r-cran-xfun (0.51+dfsg-1) ... 383s Selecting previously unselected package r-cran-highr. 383s Preparing to unpack .../102-r-cran-highr_0.11+dfsg-1_all.deb ... 383s Unpacking r-cran-highr (0.11+dfsg-1) ... 383s Selecting previously unselected package r-cran-irlba. 383s Preparing to unpack .../103-r-cran-irlba_2.3.5.1-4_arm64.deb ... 383s Unpacking r-cran-irlba (2.3.5.1-4) ... 383s Selecting previously unselected package r-cran-jsonlite. 383s Preparing to unpack .../104-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 383s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 383s Selecting previously unselected package r-cran-yaml. 383s Preparing to unpack .../105-r-cran-yaml_2.3.10-1_arm64.deb ... 383s Unpacking r-cran-yaml (2.3.10-1) ... 383s Selecting previously unselected package libjs-mathjax. 383s Preparing to unpack .../106-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 383s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 385s Selecting previously unselected package r-cran-knitr. 385s Preparing to unpack .../107-r-cran-knitr_1.49+dfsg-1_all.deb ... 385s Unpacking r-cran-knitr (1.49+dfsg-1) ... 385s Selecting previously unselected package r-cran-matrixstats. 385s Preparing to unpack .../108-r-cran-matrixstats_1.5.0-1_arm64.deb ... 385s Unpacking r-cran-matrixstats (1.5.0-1) ... 385s Selecting previously unselected package r-cran-pkgbuild. 385s Preparing to unpack .../109-r-cran-pkgbuild_1.4.6-1_all.deb ... 385s Unpacking r-cran-pkgbuild (1.4.6-1) ... 385s Selecting previously unselected package r-cran-pkgkitten. 385s Preparing to unpack .../110-r-cran-pkgkitten_0.2.4-1_all.deb ... 385s Unpacking r-cran-pkgkitten (0.2.4-1) ... 385s Selecting previously unselected package r-cran-rprojroot. 385s Preparing to unpack .../111-r-cran-rprojroot_2.0.4-2_all.deb ... 385s Unpacking r-cran-rprojroot (2.0.4-2) ... 386s Selecting previously unselected package r-cran-pkgload. 386s 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libpixman-1-0:arm64 (0.44.0-3) ... 388s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 388s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 388s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 388s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 388s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 388s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 388s Setting up libxcb-render0:arm64 (1.17.0-2) ... 388s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 388s Setting up unzip (6.0-28ubuntu6) ... 388s Setting up x11-common (1:7.7+23ubuntu3) ... 388s Setting up libdeflate0:arm64 (1.23-1) ... 388s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 389s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 389s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 389s Setting up zip (3.0-14ubuntu2) ... 389s Setting up libblas3:arm64 (3.12.1-2) ... 389s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 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libpangoft2-1.0-0:arm64 (1.56.2-1) ... 392s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 392s Setting up r-base-core (4.4.3-1) ... 392s Creating config file /etc/R/Renviron with new version 392s Setting up r-cran-crayon (1.5.3-1) ... 392s Setting up r-cran-labeling (0.4.3-1) ... 392s Setting up r-cran-lattice (0.22-6-1) ... 392s Setting up r-cran-ps (1.9.0-1) ... 392s Setting up r-cran-nlme (3.1.167-1) ... 392s Setting up r-cran-farver (2.1.2-1) ... 392s Setting up r-cran-viridislite (0.4.2-2) ... 392s Setting up r-cran-r6 (2.6.1-1) ... 392s Setting up r-cran-pkgkitten (0.2.4-1) ... 392s Setting up r-cran-magrittr (2.0.3-1) ... 392s Setting up r-cran-littler (0.3.20-2) ... 392s Setting up r-cran-fs (1.6.5+dfsg-1) ... 392s Setting up r-cran-rcpp (1.0.14-1) ... 392s Setting up r-cran-codetools (0.2-20-1) ... 392s Setting up r-cran-brio (1.1.5-1) ... 392s Setting up r-cran-diffobj (0.3.5-1) ... 392s Setting up r-cran-rlang (1.1.5-1) ... 392s Setting up r-cran-matrixstats (1.5.0-1) ... 392s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 392s Setting up littler (0.3.20-2) ... 392s Setting up r-cran-xfun (0.51+dfsg-1) ... 392s Setting up r-cran-withr (3.0.2+dfsg-1) ... 392s Setting up r-cran-processx (3.8.6-1) ... 392s Setting up r-cran-praise (1.0.0-4build1) ... 392s Setting up r-cran-generics (0.1.3-1) ... 392s Setting up r-cran-digest (0.6.37-1) ... 392s Setting up r-cran-yaml (2.3.10-1) ... 392s Setting up r-cran-evaluate (1.0.3-1) ... 392s Setting up r-cran-highr (0.11+dfsg-1) ... 392s Setting up r-cran-fansi (1.0.5-1) ... 392s Setting up r-cran-mass (7.3-64-1) ... 392s Setting up r-cran-glue (1.8.0-1) ... 392s Setting up r-cran-cli (3.6.4-1) ... 392s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 392s Setting up r-cran-rprojroot (2.0.4-2) ... 392s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 392s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 392s Setting up r-cran-utf8 (1.2.4-1) ... 392s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 392s Setting up r-cran-parallelly (1.42.0-1) ... 392s Setting up r-cran-stringi (1.8.4-1build1) ... 392s Setting up r-cran-plyr (1.8.9-1) ... 392s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 392s Setting up r-cran-isoband (0.2.7-1) ... 392s Setting up r-cran-waldo (0.6.1-2) ... 392s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 392s Setting up r-cran-matrix (1.7-3-1) ... 392s Setting up r-cran-irlba (2.3.5.1-4) ... 392s Setting up r-cran-knitr (1.49+dfsg-1) ... 392s Setting up r-cran-mgcv (1.9-1-1) ... 392s Setting up r-cran-rcpparmadillo (14.2.3-1-1) ... 392s Setting up r-cran-globals (0.16.3-1) ... 392s Setting up r-cran-vctrs (0.6.5-1) ... 392s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 392s Setting up r-cran-stringr (1.5.1-1) ... 392s Setting up r-cran-callr (3.7.6-1) ... 392s Setting up r-cran-desc (1.4.3-1) ... 392s Setting up r-cran-munsell (0.5.1-1) ... 392s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 392s Setting up r-cran-future (1.34.0+dfsg-1) ... 392s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 392s Setting up r-cran-reshape2 (1.4.4-2build1) ... 392s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 392s Setting up r-cran-gridextra (2.3-3build1) ... 392s Setting up r-cran-scales (1.3.0-1) ... 392s Setting up r-cran-pkgbuild (1.4.6-1) ... 392s Setting up r-cran-dplyr (1.1.4-4) ... 392s Setting up r-cran-pkgload (1.4.0-1) ... 392s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 392s Setting up r-cran-testthat (3.2.3-1) ... 392s Setting up r-cran-sctransform (0.4.1-1) ... 392s Processing triggers for man-db (2.13.0-1) ... 393s Processing triggers for install-info (7.1.1-1) ... 394s Processing triggers for libc-bin (2.41-1ubuntu2) ... 395s autopkgtest [16:01:25]: test run-unit-test: [----------------------- 395s BEGIN TEST testthat.R 395s 395s R version 4.4.3 (2025-02-28) -- "Trophy Case" 395s Copyright (C) 2025 The R Foundation for Statistical Computing 395s Platform: aarch64-unknown-linux-gnu 395s 395s R is free software and comes with ABSOLUTELY NO WARRANTY. 395s You are welcome to redistribute it under certain conditions. 395s Type 'license()' or 'licence()' for distribution details. 395s 395s R is a collaborative project with many contributors. 395s Type 'contributors()' for more information and 395s 'citation()' on how to cite R or R packages in publications. 395s 395s Type 'demo()' for some demos, 'help()' for on-line help, or 395s 'help.start()' for an HTML browser interface to help. 395s Type 'q()' to quit R. 395s 396s > library(testthat) 396s > library(sctransform) 398s > 398s > test_check("sctransform") 398s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 398s 398s ══ Skipped tests (10) ══════════════════════════════════════════════════════════ 398s • On CRAN (10): 'test_denoising.R:4:3', 'test_generate.R:4:3', 398s 'test_utils.R:4:3', 'test_utils.R:48:3', 'test_utils.R:70:3', 398s 'test_utils.R:83:3', 'test_vst.R:4:3', 'test_vst.R:15:3', 'test_vst.R:31:3', 398s 'test_vst.R:46:3' 398s 398s [ FAIL 0 | WARN 0 | SKIP 10 | PASS 0 ] 398s > 399s autopkgtest [16:01:29]: test run-unit-test: -----------------------] 399s autopkgtest [16:01:29]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 399s run-unit-test PASS 400s autopkgtest [16:01:30]: test pkg-r-autopkgtest: preparing testbed 400s Reading package lists... 400s Building dependency tree... 400s Reading state information... 401s Starting pkgProblemResolver with broken count: 0 401s Starting 2 pkgProblemResolver with broken count: 0 401s Done 402s The following NEW packages will be installed: 402s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 402s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 402s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 402s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 402s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 402s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 402s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 402s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 402s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 402s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 402s zlib1g-dev 402s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 402s Need to get 92.7 MB of archives. 402s After this operation, 334 MB of additional disk space will be used. 402s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 403s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 403s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 415s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 415s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 415s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 415s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 415s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 416s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 419s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 420s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 423s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 425s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 426s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 429s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 453s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 453s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 453s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 454s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 456s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 470s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 470s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 470s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 470s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 470s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 470s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 471s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 484s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 484s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 484s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 484s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 484s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 484s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 484s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 484s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 498s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 498s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 498s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 498s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 504s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 504s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 504s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 505s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 505s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 506s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 506s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 507s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 507s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 507s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 507s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 507s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 507s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 508s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 508s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 508s Fetched 92.7 MB in 1min 45s (880 kB/s) 508s Selecting previously unselected package libisl23:arm64. 508s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 96923 files and directories currently installed.) 508s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 508s Unpacking libisl23:arm64 (0.27-1) ... 508s Selecting previously unselected package libmpc3:arm64. 508s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 508s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 508s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 508s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 508s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 509s Selecting previously unselected package cpp-14. 509s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 509s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 509s Selecting previously unselected package cpp-aarch64-linux-gnu. 509s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 509s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 509s Selecting previously unselected package cpp. 509s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 509s Unpacking cpp (4:14.2.0-1ubuntu1) ... 509s Selecting previously unselected package libcc1-0:arm64. 509s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libitm1:arm64. 509s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libasan8:arm64. 509s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package liblsan0:arm64. 509s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libtsan2:arm64. 509s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libubsan1:arm64. 509s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libhwasan0:arm64. 509s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libgcc-14-dev:arm64. 509s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 509s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 510s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 510s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 510s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 510s Selecting previously unselected package gcc-14. 510s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 510s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 510s Selecting previously unselected package gcc-aarch64-linux-gnu. 510s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 510s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 510s Selecting previously unselected package gcc. 510s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 510s Unpacking gcc (4:14.2.0-1ubuntu1) ... 510s Selecting previously unselected package libstdc++-14-dev:arm64. 510s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 510s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 510s Selecting previously unselected package g++-14-aarch64-linux-gnu. 511s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 511s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 511s Selecting previously unselected package g++-14. 511s Preparing to unpack .../20-g++-14_14.2.0-17ubuntu3_arm64.deb ... 511s Unpacking g++-14 (14.2.0-17ubuntu3) ... 511s Selecting previously unselected package g++-aarch64-linux-gnu. 511s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 511s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 511s Selecting previously unselected package g++. 511s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 511s Unpacking g++ (4:14.2.0-1ubuntu1) ... 511s Selecting previously unselected package build-essential. 511s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 511s Unpacking build-essential (12.10ubuntu1) ... 511s Selecting previously unselected package dctrl-tools. 511s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 511s Unpacking dctrl-tools (2.24-3build3) ... 511s Selecting previously unselected package libgfortran-14-dev:arm64. 511s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 511s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 511s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 511s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 511s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 512s Selecting previously unselected package gfortran-14. 512s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 512s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 512s Selecting previously unselected package gfortran-aarch64-linux-gnu. 512s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 512s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 512s Selecting previously unselected package gfortran. 512s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 512s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 512s Selecting previously unselected package icu-devtools. 512s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 512s Unpacking icu-devtools (76.1-1ubuntu2) ... 512s Selecting previously unselected package libblas-dev:arm64. 512s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 512s Unpacking libblas-dev:arm64 (3.12.1-2) ... 512s Selecting previously unselected package libbz2-dev:arm64. 512s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 512s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 512s Selecting previously unselected package libdeflate-dev:arm64. 512s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 512s Unpacking libdeflate-dev:arm64 (1.23-1) ... 512s Selecting previously unselected package libicu-dev:arm64. 512s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 512s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 512s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 512s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 512s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 512s Selecting previously unselected package libjpeg8-dev:arm64. 512s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 512s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 512s Selecting previously unselected package libjpeg-dev:arm64. 512s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 512s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 512s Selecting previously unselected package liblapack-dev:arm64. 513s Preparing to 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libreadline-dev:arm64 (8.2-6) ... 514s Setting up libpcre2-16-0:arm64 (10.45-1) ... 514s Setting up libpcre2-32-0:arm64 (10.45-1) ... 514s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 514s Setting up libpkgconf3:arm64 (1.8.1-4) ... 514s Setting up libmpc3:arm64 (1.3.1-1build2) ... 514s Setting up icu-devtools (76.1-1ubuntu2) ... 514s Setting up pkgconf-bin (1.8.1-4) ... 514s Setting up liblzma-dev:arm64 (5.6.4-1) ... 514s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 514s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 514s Setting up libpcre2-posix3:arm64 (10.45-1) ... 514s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 514s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 514s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 514s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 514s Setting up libisl23:arm64 (0.27-1) ... 514s Setting up libdeflate-dev:arm64 (1.23-1) ... 514s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 514s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 514s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 514s Setting up libblas-dev:arm64 (3.12.1-2) ... 514s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 514s Setting up dctrl-tools (2.24-3build3) ... 514s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 514s Setting up libbz2-dev:arm64 (1.0.8-6) ... 514s Setting up libpcre2-dev:arm64 (10.45-1) ... 514s Setting up libpng-dev:arm64 (1.6.47-1) ... 514s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 514s Setting up pkgconf:arm64 (1.8.1-4) ... 514s Setting up liblapack-dev:arm64 (3.12.1-2) ... 514s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 514s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 514s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 514s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 514s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 514s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 514s Setting up cpp-14 (14.2.0-17ubuntu3) ... 514s Setting up cpp (4:14.2.0-1ubuntu1) ... 514s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 514s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 514s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 514s Setting up gcc-14 (14.2.0-17ubuntu3) ... 514s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 514s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 514s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 514s Setting up g++-14 (14.2.0-17ubuntu3) ... 514s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 514s Setting up gcc (4:14.2.0-1ubuntu1) ... 514s Setting up g++ (4:14.2.0-1ubuntu1) ... 514s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 514s Setting up build-essential (12.10ubuntu1) ... 514s Setting up gfortran (4:14.2.0-1ubuntu1) ... 514s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 514s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 514s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 514s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 514s Setting up r-base-dev (4.4.3-1) ... 514s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 514s Processing triggers for libc-bin (2.41-1ubuntu2) ... 514s Processing triggers for man-db (2.13.0-1) ... 515s Processing triggers for install-info (7.1.1-1) ... 516s autopkgtest [16:03:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 516s autopkgtest [16:03:26]: test pkg-r-autopkgtest: [----------------------- 516s Test: Try to load the R library sctransform 516s 516s R version 4.4.3 (2025-02-28) -- "Trophy Case" 516s Copyright (C) 2025 The R Foundation for Statistical Computing 516s Platform: aarch64-unknown-linux-gnu 516s 516s R is free software and comes with ABSOLUTELY NO WARRANTY. 516s You are welcome to redistribute it under certain conditions. 516s Type 'license()' or 'licence()' for distribution details. 516s 516s R is a collaborative project with many contributors. 516s Type 'contributors()' for more information and 516s 'citation()' on how to cite R or R packages in publications. 516s 516s Type 'demo()' for some demos, 'help()' for on-line help, or 516s 'help.start()' for an HTML browser interface to help. 516s Type 'q()' to quit R. 516s 517s > library('sctransform') 519s > 519s > 519s Other tests are currently unsupported! 519s They will be progressively added. 519s autopkgtest [16:03:29]: test pkg-r-autopkgtest: -----------------------] 520s pkg-r-autopkgtest PASS 520s autopkgtest [16:03:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 521s autopkgtest [16:03:31]: @@@@@@@@@@@@@@@@@@@@ summary 521s run-unit-test PASS 521s pkg-r-autopkgtest PASS 540s nova [W] Using flock in prodstack6-arm64 540s Creating nova instance adt-plucky-arm64-r-cran-sctransform-20250315-155450-juju-7f2275-prod-proposed-migration-environment-20-7a636e64-a7dd-4c2c-b2dd-ce53fbce2c96 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 540s nova [W] Timed out waiting for 75c5b1a9-b585-4d6e-abdd-fd7c168f4851 to get deleted.