0s autopkgtest [18:41:36]: starting date and time: 2025-02-03 18:41:36+0000
  1s autopkgtest [18:41:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [18:41:37]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tp7etgp9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-testthat --apt-upgrade r-cran-rcpphnsw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-testthat/3.2.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-20.secgroup --name adt-plucky-arm64-r-cran-rcpphnsw-20250203-184136-juju-7f2275-prod-proposed-migration-environment-15-c1e69c13-2262-49d0-bc64-52b83eca7926 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
151s autopkgtest [18:44:07]: testbed dpkg architecture: arm64
151s autopkgtest [18:44:07]: testbed apt version: 2.9.18
152s autopkgtest [18:44:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup
152s autopkgtest [18:44:08]: testbed release detected to be: None
153s autopkgtest [18:44:09]: updating testbed package index (apt update)
153s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
153s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
153s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
153s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
153s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [884 kB]
154s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
154s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB]
154s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB]
154s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [829 kB]
154s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4536 B]
154s Fetched 2031 kB in 1s (1921 kB/s)
155s Reading package lists...
156s + lsb_release --codename --short
156s + RELEASE=plucky
156s + cat
156s + [ plucky != trusty ]
156s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
156s Reading package lists...
156s Building dependency tree...
156s Reading state information...
157s Calculating upgrade...
158s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
158s + /usr/lib/apt/apt-helper analyze-pattern ?true
158s + + sed s/\./\\./g
158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
158s uname -r
158s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.*
158s + apt list ?obsolete
158s + tail -n+2
158s + grep -v ^linux-.*6\.12\.0-12-generic.*+ cut
158s  -d/ -f1
158s + true
158s + obsolete_pkgs=
158s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
159s + grep -q trusty /etc/lsb-release
159s + [ ! -d /usr/share/doc/unattended-upgrades ]
159s + [ ! -d /usr/share/doc/lxd ]
159s + [ ! -d /usr/share/doc/lxd-client ]
159s + [ ! -d /usr/share/doc/snapd ]
159s + type iptables
159s + cat
159s + chmod 755 /etc/rc.local
159s + . /etc/rc.local
159s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
159s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
159s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
159s + uname -m
159s + [ aarch64 = ppc64le ]
159s + [ -d /run/systemd/system ]
159s + systemd-detect-virt --quiet --vm
159s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
159s + cat
159s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
159s + echo COMPRESS=lz4
159s autopkgtest [18:44:15]: upgrading testbed (apt dist-upgrade and autopurge)
159s Reading package lists...
159s Building dependency tree...
159s Reading state information...
160s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
160s Starting 2 pkgProblemResolver with broken count: 0
160s Done
161s Entering ResolveByKeep
161s 
162s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
162s Reading package lists...
162s Building dependency tree...
162s Reading state information...
163s Starting pkgProblemResolver with broken count: 0
163s Starting 2 pkgProblemResolver with broken count: 0
163s Done
163s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
166s autopkgtest [18:44:22]: testbed running kernel: Linux 6.12.0-12-generic #12-Ubuntu SMP PREEMPT_DYNAMIC Thu Jan 23 07:24:57 UTC 2025
166s autopkgtest [18:44:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-rcpphnsw
168s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-rcpphnsw 0.5.0+ds-1 (dsc) [2178 B]
168s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-rcpphnsw 0.5.0+ds-1 (tar) [16.8 kB]
168s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-rcpphnsw 0.5.0+ds-1 (diff) [2900 B]
168s gpgv: Signature made Tue Oct 17 09:11:39 2023 UTC
168s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
168s gpgv:                issuer "tille@debian.org"
168s gpgv: Can't check signature: No public key
168s dpkg-source: warning: cannot verify inline signature for ./r-cran-rcpphnsw_0.5.0+ds-1.dsc: no acceptable signature found
168s autopkgtest [18:44:24]: testing package r-cran-rcpphnsw version 0.5.0+ds-1
169s autopkgtest [18:44:25]: build not needed
171s autopkgtest [18:44:27]: test run-unit-test: preparing testbed
171s Reading package lists...
171s Building dependency tree...
171s Reading state information...
172s Starting pkgProblemResolver with broken count: 0
172s Starting 2 pkgProblemResolver with broken count: 0
172s Done
172s The following NEW packages will be installed:
172s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
172s   fonts-glyphicons-halflings libblas3 libcairo2 libdatrie1 libdeflate0
172s   libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6
172s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap liblapack3 liblerc4
172s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
172s   libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0
172s   libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
172s   libxss1 libxt6t64 littler node-html5shiv r-base-core r-cran-askpass
172s   r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-crayon r-cran-curl
173s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fs
173s   r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lazyeval r-cran-lifecycle
173s   r-cran-littler r-cran-magrittr r-cran-mime r-cran-openssl r-cran-pkgbuild
173s   r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
173s   r-cran-r6 r-cran-rcpp r-cran-rcpphnsw r-cran-rex r-cran-rlang
173s   r-cran-rprojroot r-cran-sys r-cran-testthat r-cran-waldo r-cran-withr
173s   r-cran-yaml unzip x11-common xdg-utils zip
173s 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded.
173s Need to get 52.8 MB of archives.
173s After this operation, 112 MB of additional disk space will be used.
173s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
173s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
173s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
173s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
173s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
173s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
173s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB]
173s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
173s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
173s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
173s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
173s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
173s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
173s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
173s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-13ubuntu1 [437 kB]
173s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-13ubuntu1 [145 kB]
173s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
173s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
173s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
173s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
173s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
173s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
173s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
173s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB]
173s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
173s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
173s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
173s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
173s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
173s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
173s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
173s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
173s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
174s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
174s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
174s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
174s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
174s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
174s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
174s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
174s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
174s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
174s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
174s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
174s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
174s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
174s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
174s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
174s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
174s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB]
174s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB]
174s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
174s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.8.1-1 [395 kB]
174s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
174s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.5-1 [354 kB]
174s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
174s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.3-1 [1347 kB]
174s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
174s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [445 kB]
174s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB]
174s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rex all 1.2.1-1 [129 kB]
174s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.1.0+dfsg-1 [194 kB]
174s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
175s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.2.0+dfsg-1 [404 kB]
175s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
175s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
175s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
175s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
175s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB]
175s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
175s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
175s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
175s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
175s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
175s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
175s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
175s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
175s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
175s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
175s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
175s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
175s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
175s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
175s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpphnsw arm64 0.5.0+ds-1 [168 kB]
175s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-1 [150 kB]
175s Get:86 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
175s Preconfiguring packages ...
175s Fetched 52.8 MB in 2s (22.5 MB/s)
175s Selecting previously unselected package fonts-dejavu-mono.
176s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 116576 files and directories currently installed.)
176s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
176s Unpacking fonts-dejavu-mono (2.37-8) ...
176s Selecting previously unselected package fonts-dejavu-core.
176s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
176s Unpacking fonts-dejavu-core (2.37-8) ...
176s Selecting previously unselected package fontconfig-config.
176s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
176s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
176s Selecting previously unselected package libfontconfig1:arm64.
176s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
176s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
176s Selecting previously unselected package fontconfig.
176s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ...
176s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
176s Selecting previously unselected package fonts-glyphicons-halflings.
177s Preparing to unpack .../05-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
177s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
177s Selecting previously unselected package libblas3:arm64.
177s Preparing to unpack .../06-libblas3_3.12.0-4_arm64.deb ...
177s Unpacking libblas3:arm64 (3.12.0-4) ...
177s Selecting previously unselected package libpixman-1-0:arm64.
177s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_arm64.deb ...
177s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
177s Selecting previously unselected package libxcb-render0:arm64.
177s Preparing to unpack .../08-libxcb-render0_1.17.0-2_arm64.deb ...
177s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
177s Selecting previously unselected package libxcb-shm0:arm64.
177s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_arm64.deb ...
177s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
177s Selecting previously unselected package libxrender1:arm64.
177s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
177s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
177s Selecting previously unselected package libcairo2:arm64.
177s Preparing to unpack .../11-libcairo2_1.18.2-2_arm64.deb ...
177s Unpacking libcairo2:arm64 (1.18.2-2) ...
177s Selecting previously unselected package libdatrie1:arm64.
177s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_arm64.deb ...
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177s Selecting previously unselected package libgfortran5:arm64.
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177s Selecting previously unselected package libgomp1:arm64.
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177s Selecting previously unselected package libgraphite2-3:arm64.
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177s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
177s Selecting previously unselected package libharfbuzz0b:arm64.
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177s Selecting previously unselected package x11-common.
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177s Selecting previously unselected package libice6:arm64.
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177s Selecting previously unselected package libjpeg-turbo8:arm64.
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178s Selecting previously unselected package libjs-bootstrap.
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178s Selecting previously unselected package liblapack3:arm64.
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178s Selecting previously unselected package liblerc4:arm64.
178s Preparing to unpack .../24-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
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178s Selecting previously unselected package libthai-data.
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178s Selecting previously unselected package libthai0:arm64.
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178s Selecting previously unselected package libpango-1.0-0:arm64.
178s Preparing to unpack .../27-libpango-1.0-0_1.56.1-1_arm64.deb ...
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178s Selecting previously unselected package libpangoft2-1.0-0:arm64.
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178s Selecting previously unselected package libpangocairo-1.0-0:arm64.
178s Preparing to unpack .../29-libpangocairo-1.0-0_1.56.1-1_arm64.deb ...
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178s Selecting previously unselected package libpaper2:arm64.
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178s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
178s Selecting previously unselected package libpaper-utils.
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178s Selecting previously unselected package libsharpyuv0:arm64.
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178s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
178s Selecting previously unselected package libsm6:arm64.
178s Preparing to unpack .../33-libsm6_2%3a1.2.4-1_arm64.deb ...
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178s Selecting previously unselected package libtcl8.6:arm64.
178s Preparing to unpack .../34-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
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178s Selecting previously unselected package libjbig0:arm64.
179s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
179s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
179s Selecting previously unselected package libwebp7:arm64.
179s Preparing to unpack .../36-libwebp7_1.5.0-0.1_arm64.deb ...
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179s Selecting previously unselected package libtiff6:arm64.
179s Preparing to unpack .../37-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
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179s Selecting previously unselected package libxft2:arm64.
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179s Selecting previously unselected package libxss1:arm64.
179s Preparing to unpack .../39-libxss1_1%3a1.2.3-1build3_arm64.deb ...
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179s Selecting previously unselected package libtk8.6:arm64.
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180s Selecting previously unselected package r-cran-littler.
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180s Selecting previously unselected package r-cran-sys.
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180s Selecting previously unselected package r-cran-askpass.
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180s Selecting previously unselected package r-cran-brio.
180s Preparing to unpack .../51-r-cran-brio_1.1.5-1_arm64.deb ...
180s Unpacking r-cran-brio (1.1.5-1) ...
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180s Selecting previously unselected package r-cran-r6.
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180s Unpacking r-cran-r6 (2.5.1-1) ...
180s Selecting previously unselected package r-cran-processx.
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180s Unpacking r-cran-processx (3.8.5-1) ...
180s Selecting previously unselected package r-cran-callr.
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180s Unpacking r-cran-callr (3.7.6-1) ...
180s Selecting previously unselected package r-cran-cli.
180s Preparing to unpack .../56-r-cran-cli_3.6.3-1_arm64.deb ...
180s Unpacking r-cran-cli (3.6.3-1) ...
180s Selecting previously unselected package r-cran-digest.
180s Preparing to unpack .../57-r-cran-digest_0.6.37-1_arm64.deb ...
180s Unpacking r-cran-digest (0.6.37-1) ...
180s Selecting previously unselected package r-cran-jsonlite.
180s Preparing to unpack .../58-r-cran-jsonlite_1.8.9+dfsg-1_arm64.deb ...
180s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ...
181s Selecting previously unselected package r-cran-lazyeval.
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181s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
181s Selecting previously unselected package r-cran-rex.
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181s Unpacking r-cran-rex (1.2.1-1) ...
181s Selecting previously unselected package r-cran-curl.
181s Preparing to unpack .../61-r-cran-curl_6.1.0+dfsg-1_arm64.deb ...
181s Unpacking r-cran-curl (6.1.0+dfsg-1) ...
181s Selecting previously unselected package r-cran-mime.
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181s Unpacking r-cran-mime (0.12-2) ...
181s Selecting previously unselected package r-cran-openssl.
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181s Unpacking r-cran-openssl (2.2.0+dfsg-1) ...
181s Selecting previously unselected package r-cran-httr.
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181s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
181s Selecting previously unselected package r-cran-crayon.
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181s Unpacking r-cran-crayon (1.5.3-1) ...
181s Selecting previously unselected package r-cran-withr.
181s Preparing to unpack .../66-r-cran-withr_3.0.2+dfsg-1_all.deb ...
181s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
181s Selecting previously unselected package r-cran-yaml.
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181s Selecting previously unselected package r-cran-covr.
181s Preparing to unpack .../68-r-cran-covr_3.6.4+dfsg-1_arm64.deb ...
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183s Selecting previously unselected package r-cran-testthat.
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183s Unpacking r-cran-testthat (3.2.3-1) ...
183s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
183s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
183s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
183s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
183s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
183s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
183s Setting up libxcb-render0:arm64 (1.17.0-2) ...
183s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
183s Setting up unzip (6.0-28ubuntu6) ...
183s Setting up x11-common (1:7.7+23ubuntu3) ...
183s Setting up node-html5shiv (3.7.3+dfsg-5) ...
183s Setting up libdeflate0:arm64 (1.23-1) ...
183s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
183s Setting up libgomp1:arm64 (14.2.0-13ubuntu1) ...
183s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
183s Setting up zip (3.0-14ubuntu2) ...
183s Setting up libblas3:arm64 (3.12.0-4) ...
183s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
183s Setting up fonts-dejavu-mono (2.37-8) ...
183s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
183s Setting up fonts-dejavu-core (2.37-8) ...
183s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
183s Setting up libgfortran5:arm64 (14.2.0-13ubuntu1) ...
183s Setting up libwebp7:arm64 (1.5.0-0.1) ...
183s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
183s Setting up libthai-data (0.1.29-2build1) ...
183s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
183s Setting up libpaper2:arm64 (2.2.5-0.3) ...
183s Setting up xdg-utils (1.2.1-0ubuntu1) ...
183s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
183s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
183s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
183s Setting up libice6:arm64 (2:1.1.1-1) ...
183s Setting up liblapack3:arm64 (3.12.0-4) ...
183s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
183s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
184s Setting up libpaper-utils (2.2.5-0.3) ...
184s Setting up libthai0:arm64 (0.1.29-2build1) ...
184s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
184s Setting up libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
184s Setting up libsm6:arm64 (2:1.2.4-1) ...
184s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
186s Regenerating fonts cache... done.
186s Setting up libxft2:arm64 (2.3.6-1build1) ...
186s Setting up libtk8.6:arm64 (8.6.16-1) ...
186s Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
186s Setting up libcairo2:arm64 (1.18.2-2) ...
186s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
186s Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
186s Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
186s Setting up r-base-core (4.4.2-1build1) ...
186s Creating config file /etc/R/Renviron with new version
186s Setting up r-cran-crayon (1.5.3-1) ...
186s Setting up r-cran-ps (1.8.1-1) ...
186s Setting up r-cran-lazyeval (0.2.2-1build1) ...
186s Setting up r-cran-r6 (2.5.1-1) ...
186s Setting up r-cran-pkgkitten (0.2.4-1) ...
186s Setting up r-cran-magrittr (2.0.3-1) ...
186s Setting up r-cran-littler (0.3.20-2) ...
186s Setting up r-cran-fs (1.6.5+dfsg-1) ...
186s Setting up r-cran-rcpp (1.0.14-1) ...
186s Setting up r-cran-curl (6.1.0+dfsg-1) ...
186s Setting up r-cran-brio (1.1.5-1) ...
186s Setting up r-cran-diffobj (0.3.5-1) ...
186s Setting up r-cran-rlang (1.1.5-1) ...
186s Setting up littler (0.3.20-2) ...
186s Setting up r-cran-rcpphnsw (0.5.0+ds-1) ...
186s Setting up r-cran-sys (3.4.3-1) ...
186s Setting up r-cran-withr (3.0.2+dfsg-1) ...
186s Setting up r-cran-processx (3.8.5-1) ...
186s Setting up r-cran-mime (0.12-2) ...
186s Setting up r-cran-praise (1.0.0-4build1) ...
186s Setting up r-cran-digest (0.6.37-1) ...
186s Setting up r-cran-yaml (2.3.10-1) ...
186s Setting up r-cran-evaluate (1.0.3-1) ...
186s Setting up r-cran-glue (1.8.0-1) ...
186s Setting up r-cran-cli (3.6.3-1) ...
186s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
186s Setting up r-cran-rprojroot (2.0.4-2) ...
186s Setting up r-cran-askpass (1.2.1-1) ...
186s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
186s Setting up r-cran-rex (1.2.1-1) ...
186s Setting up r-cran-waldo (0.6.1-1) ...
186s Setting up r-cran-openssl (2.2.0+dfsg-1) ...
186s Setting up r-cran-callr (3.7.6-1) ...
186s Setting up r-cran-desc (1.4.3-1) ...
186s Setting up r-cran-httr (1.4.7+dfsg-1) ...
186s Setting up r-cran-covr (3.6.4+dfsg-1) ...
186s Setting up r-cran-pkgbuild (1.4.6-1) ...
186s Setting up r-cran-pkgload (1.4.0-1) ...
186s Setting up r-cran-testthat (3.2.3-1) ...
186s Processing triggers for libc-bin (2.40-4ubuntu1) ...
186s Processing triggers for man-db (2.13.0-1) ...
188s Processing triggers for install-info (7.1.1-1) ...
189s autopkgtest [18:44:45]: test run-unit-test: [-----------------------
189s BEGIN TEST testthat.R
189s 
189s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
189s Copyright (C) 2024 The R Foundation for Statistical Computing
189s Platform: aarch64-unknown-linux-gnu
189s 
189s R is free software and comes with ABSOLUTELY NO WARRANTY.
189s You are welcome to redistribute it under certain conditions.
189s Type 'license()' or 'licence()' for distribution details.
189s 
189s R is a collaborative project with many contributors.
189s Type 'contributors()' for more information and
189s 'citation()' on how to cite R or R packages in publications.
189s 
189s Type 'demo()' for some demos, 'help()' for on-line help, or
189s 'help.start()' for an HTML browser interface to help.
189s Type 'q()' to quit R.
189s 
190s > library(testthat)
190s > library(RcppHNSW)
190s code for methods in class “Rcpp_HnswL2” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
190s code for methods in class “Rcpp_HnswL2” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
191s code for methods in class “Rcpp_HnswCosine” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
191s code for methods in class “Rcpp_HnswCosine” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
191s code for methods in class “Rcpp_HnswIp” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
191s code for methods in class “Rcpp_HnswIp” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
191s > 
191s > test_check("RcppHNSW")
192s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 70 ]
192s > 
192s autopkgtest [18:44:48]: test run-unit-test: -----------------------]
193s autopkgtest [18:44:49]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
193s run-unit-test        PASS
193s autopkgtest [18:44:49]: test pkg-r-autopkgtest: preparing testbed
193s Reading package lists...
194s Building dependency tree...
194s Reading state information...
195s Starting pkgProblemResolver with broken count: 0
195s Starting 2 pkgProblemResolver with broken count: 0
195s Done
196s The following NEW packages will be installed:
196s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
196s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
196s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
196s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
196s   libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
196s   libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
196s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
196s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
196s   libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
196s   libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev
196s   zlib1g-dev
196s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded.
196s Need to get 92.4 MB of archives.
196s After this operation, 333 MB of additional disk space will be used.
196s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
197s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
197s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [10.6 MB]
197s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-13ubuntu1 [1030 B]
197s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
197s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
197s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-13ubuntu1 [49.6 kB]
197s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-13ubuntu1 [27.8 kB]
197s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-13ubuntu1 [2893 kB]
197s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-13ubuntu1 [1283 kB]
197s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-13ubuntu1 [2686 kB]
197s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-13ubuntu1 [1152 kB]
197s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-13ubuntu1 [1598 kB]
197s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-13ubuntu1 [2596 kB]
197s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [20.9 MB]
198s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-13ubuntu1 [523 kB]
198s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
198s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
198s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-13ubuntu1 [2502 kB]
198s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [12.1 MB]
198s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-13ubuntu1 [21.1 kB]
198s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
198s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
198s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
198s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
198s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-13ubuntu1 [498 kB]
198s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [11.4 MB]
199s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-13ubuntu1 [13.2 kB]
199s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B]
199s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B]
199s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
199s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-4 [120 kB]
199s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
199s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
199s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
199s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
199s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
199s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
199s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-4 [4419 kB]
199s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB]
199s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
199s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB]
199s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B]
199s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB]
199s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
199s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
199s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-3 [270 kB]
199s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
199s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.3-1 [180 kB]
199s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
199s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
199s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
199s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.2-1build1 [4342 B]
199s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
200s Fetched 92.4 MB in 3s (31.4 MB/s)
200s Selecting previously unselected package libisl23:arm64.
200s (Reading database ... 
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(Reading database ... 123377 files and directories currently installed.)
200s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
200s Unpacking libisl23:arm64 (0.27-1) ...
200s Selecting previously unselected package libmpc3:arm64.
200s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
200s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
200s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
200s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
200s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
200s Selecting previously unselected package cpp-14.
200s Preparing to unpack .../03-cpp-14_14.2.0-13ubuntu1_arm64.deb ...
200s Unpacking cpp-14 (14.2.0-13ubuntu1) ...
200s Selecting previously unselected package cpp-aarch64-linux-gnu.
200s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
200s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
200s Selecting previously unselected package cpp.
200s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
200s Unpacking cpp (4:14.1.0-2ubuntu1) ...
200s Selecting previously unselected package libcc1-0:arm64.
200s Preparing to unpack .../06-libcc1-0_14.2.0-13ubuntu1_arm64.deb ...
200s Unpacking libcc1-0:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package libitm1:arm64.
201s Preparing to unpack .../07-libitm1_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking libitm1:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package libasan8:arm64.
201s Preparing to unpack .../08-libasan8_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking libasan8:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package liblsan0:arm64.
201s Preparing to unpack .../09-liblsan0_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking liblsan0:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package libtsan2:arm64.
201s Preparing to unpack .../10-libtsan2_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking libtsan2:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package libubsan1:arm64.
201s Preparing to unpack .../11-libubsan1_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking libubsan1:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package libhwasan0:arm64.
201s Preparing to unpack .../12-libhwasan0_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking libhwasan0:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package libgcc-14-dev:arm64.
201s Preparing to unpack .../13-libgcc-14-dev_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking libgcc-14-dev:arm64 (14.2.0-13ubuntu1) ...
201s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
201s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
201s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
202s Selecting previously unselected package gcc-14.
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202s Unpacking gcc-14 (14.2.0-13ubuntu1) ...
202s Selecting previously unselected package gcc-aarch64-linux-gnu.
202s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
202s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
202s Selecting previously unselected package gcc.
202s Preparing to unpack .../17-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ...
202s Unpacking gcc (4:14.1.0-2ubuntu1) ...
202s Selecting previously unselected package libstdc++-14-dev:arm64.
202s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-13ubuntu1_arm64.deb ...
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202s Selecting previously unselected package g++-14-aarch64-linux-gnu.
202s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
202s Unpacking g++-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
203s Selecting previously unselected package g++-14.
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203s Unpacking g++-14 (14.2.0-13ubuntu1) ...
203s Selecting previously unselected package g++-aarch64-linux-gnu.
203s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
203s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
203s Selecting previously unselected package g++.
203s Preparing to unpack .../22-g++_4%3a14.1.0-2ubuntu1_arm64.deb ...
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203s Selecting previously unselected package build-essential.
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203s Selecting previously unselected package dctrl-tools.
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203s Selecting previously unselected package libgfortran-14-dev:arm64.
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203s Unpacking libgfortran-14-dev:arm64 (14.2.0-13ubuntu1) ...
203s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
203s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
203s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
203s Selecting previously unselected package gfortran-14.
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203s Unpacking gfortran-14 (14.2.0-13ubuntu1) ...
203s Selecting previously unselected package gfortran-aarch64-linux-gnu.
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203s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
203s Selecting previously unselected package gfortran.
203s Preparing to unpack .../29-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ...
203s Unpacking gfortran (4:14.1.0-2ubuntu1) ...
203s Selecting previously unselected package icu-devtools.
203s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ...
203s Unpacking icu-devtools (76.1-1ubuntu2) ...
204s Selecting previously unselected package libblas-dev:arm64.
204s Preparing to unpack .../31-libblas-dev_3.12.0-4_arm64.deb ...
204s Unpacking libblas-dev:arm64 (3.12.0-4) ...
204s Selecting previously unselected package libbz2-dev:arm64.
204s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ...
204s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
204s Selecting previously unselected package libdeflate-dev:arm64.
204s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ...
204s Unpacking libdeflate-dev:arm64 (1.23-1) ...
204s Selecting previously unselected package libicu-dev:arm64.
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204s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
204s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
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204s Selecting previously unselected package libjpeg8-dev:arm64.
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204s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
204s Selecting previously unselected package libjpeg-dev:arm64.
204s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
204s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
204s Selecting previously unselected package liblapack-dev:arm64.
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204s Unpacking liblapack-dev:arm64 (3.12.0-4) ...
204s Selecting previously unselected package libncurses-dev:arm64.
204s Preparing to unpack .../39-libncurses-dev_6.5-2_arm64.deb ...
204s Unpacking libncurses-dev:arm64 (6.5-2) ...
205s Selecting previously unselected package libpcre2-16-0:arm64.
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205s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
205s Selecting previously unselected package libpcre2-32-0:arm64.
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205s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
205s Selecting previously unselected package libpcre2-posix3:arm64.
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205s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
205s Selecting previously unselected package libpcre2-dev:arm64.
205s Preparing to unpack .../43-libpcre2-dev_10.42-4ubuntu3_arm64.deb ...
205s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ...
205s Selecting previously unselected package libpkgconf3:arm64.
205s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ...
205s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
205s Selecting previously unselected package zlib1g-dev:arm64.
205s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
205s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
205s Selecting previously unselected package libpng-dev:arm64.
205s Preparing to unpack .../46-libpng-dev_1.6.44-3_arm64.deb ...
205s Unpacking libpng-dev:arm64 (1.6.44-3) ...
205s Selecting previously unselected package libreadline-dev:arm64.
205s Preparing to unpack .../47-libreadline-dev_8.2-6_arm64.deb ...
205s Unpacking libreadline-dev:arm64 (8.2-6) ...
205s Selecting previously unselected package liblzma-dev:arm64.
205s Preparing to unpack .../48-liblzma-dev_5.6.3-1_arm64.deb ...
205s Unpacking liblzma-dev:arm64 (5.6.3-1) ...
205s Selecting previously unselected package pkgconf-bin.
205s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ...
205s Unpacking pkgconf-bin (1.8.1-4) ...
205s Selecting previously unselected package pkgconf:arm64.
205s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ...
205s Unpacking pkgconf:arm64 (1.8.1-4) ...
205s Selecting previously unselected package libtirpc-dev:arm64.
205s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
205s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
205s Selecting previously unselected package r-base-dev.
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205s Unpacking r-base-dev (4.4.2-1build1) ...
205s Selecting previously unselected package pkg-r-autopkgtest.
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205s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
205s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
205s Setting up libncurses-dev:arm64 (6.5-2) ...
205s Setting up libreadline-dev:arm64 (8.2-6) ...
205s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
205s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
205s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
205s Setting up libpkgconf3:arm64 (1.8.1-4) ...
205s Setting up libmpc3:arm64 (1.3.1-1build2) ...
205s Setting up icu-devtools (76.1-1ubuntu2) ...
205s Setting up pkgconf-bin (1.8.1-4) ...
205s Setting up liblzma-dev:arm64 (5.6.3-1) ...
205s Setting up libubsan1:arm64 (14.2.0-13ubuntu1) ...
205s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
205s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
205s Setting up libhwasan0:arm64 (14.2.0-13ubuntu1) ...
205s Setting up libasan8:arm64 (14.2.0-13ubuntu1) ...
205s Setting up libtsan2:arm64 (14.2.0-13ubuntu1) ...
205s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
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205s Setting up libcc1-0:arm64 (14.2.0-13ubuntu1) ...
205s Setting up liblsan0:arm64 (14.2.0-13ubuntu1) ...
205s Setting up libblas-dev:arm64 (3.12.0-4) ...
205s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
205s Setting up dctrl-tools (2.24-3build3) ...
205s Setting up libitm1:arm64 (14.2.0-13ubuntu1) ...
205s Setting up libbz2-dev:arm64 (1.0.8-6) ...
205s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ...
205s Setting up libpng-dev:arm64 (1.6.44-3) ...
205s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
205s Setting up pkgconf:arm64 (1.8.1-4) ...
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205s Setting up cpp-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
205s Setting up libgcc-14-dev:arm64 (14.2.0-13ubuntu1) ...
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205s Setting up cpp (4:14.1.0-2ubuntu1) ...
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205s Setting up gfortran (4:14.1.0-2ubuntu1) ...
205s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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205s Setting up r-base-dev (4.4.2-1build1) ...
205s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
205s Processing triggers for libc-bin (2.40-4ubuntu1) ...
205s Processing triggers for man-db (2.13.0-1) ...
207s Processing triggers for install-info (7.1.1-1) ...
208s autopkgtest [18:45:04]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
208s autopkgtest [18:45:04]: test pkg-r-autopkgtest: [-----------------------
208s Test: Try to load the R library RcppHNSW
208s 
208s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
208s Copyright (C) 2024 The R Foundation for Statistical Computing
208s Platform: aarch64-unknown-linux-gnu
208s 
208s R is free software and comes with ABSOLUTELY NO WARRANTY.
208s You are welcome to redistribute it under certain conditions.
208s Type 'license()' or 'licence()' for distribution details.
208s 
208s R is a collaborative project with many contributors.
208s Type 'contributors()' for more information and
208s 'citation()' on how to cite R or R packages in publications.
208s 
208s Type 'demo()' for some demos, 'help()' for on-line help, or
208s 'help.start()' for an HTML browser interface to help.
208s Type 'q()' to quit R.
208s 
209s > library('RcppHNSW')
209s code for methods in class “Rcpp_HnswL2” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
209s code for methods in class “Rcpp_HnswL2” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
209s code for methods in class “Rcpp_HnswCosine” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
209s code for methods in class “Rcpp_HnswCosine” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
209s code for methods in class “Rcpp_HnswIp” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
209s code for methods in class “Rcpp_HnswIp” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?)
209s > 
209s > 
209s Other tests are currently unsupported!
209s They will be progressively added.
210s autopkgtest [18:45:06]: test pkg-r-autopkgtest: -----------------------]
210s autopkgtest [18:45:06]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
210s pkg-r-autopkgtest    PASS
211s autopkgtest [18:45:07]: @@@@@@@@@@@@@@@@@@@@ summary
211s run-unit-test        PASS
211s pkg-r-autopkgtest    PASS
231s nova [W] Using flock in prodstack6-arm64
231s Creating nova instance adt-plucky-arm64-r-cran-rcpphnsw-20250203-184136-juju-7f2275-prod-proposed-migration-environment-15-c1e69c13-2262-49d0-bc64-52b83eca7926 from image adt/ubuntu-plucky-arm64-server-20250203.img (UUID fb7ca42f-38bc-45ee-b928-9b9fb089de0d)...
231s nova [W] Timed out waiting for edda9ea4-3e3b-4d37-a869-7a6dca059d0f to get deleted.