0s autopkgtest [15:48:21]: starting date and time: 2025-03-15 15:48:21+0000
  0s autopkgtest [15:48:21]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:48:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fiy0wl_f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-rann --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-30.secgroup --name adt-plucky-arm64-r-cran-rann-20250315-154820-juju-7f2275-prod-proposed-migration-environment-2-5b9e6acc-a67c-4be4-95ea-043b7b664321 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
490s autopkgtest [15:56:31]: testbed dpkg architecture: arm64
491s autopkgtest [15:56:32]: testbed apt version: 2.9.33
491s autopkgtest [15:56:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
491s autopkgtest [15:56:32]: testbed release detected to be: None
492s autopkgtest [15:56:33]: updating testbed package index (apt update)
493s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
493s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
493s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
493s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
493s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
493s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
493s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
494s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB]
494s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B]
494s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
494s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB]
495s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB]
495s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
495s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B]
495s Fetched 1078 kB in 2s (484 kB/s)
496s Reading package lists...
497s Reading package lists...
497s Building dependency tree...
497s Reading state information...
498s Calculating upgrade...
498s Calculating upgrade...
499s The following packages will be upgraded:
499s   pinentry-curses python3-jinja2 strace
499s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
499s Need to get 647 kB of archives.
499s After this operation, 11.3 kB of additional disk space will be used.
499s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
500s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB]
500s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
501s Fetched 647 kB in 2s (368 kB/s)
502s (Reading database ... 
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(Reading database ... 20%
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
502s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
502s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
502s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ...
502s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
502s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
502s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
502s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
502s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
502s Setting up strace (6.13+ds-1ubuntu1) ...
502s Processing triggers for man-db (2.13.0-1) ...
503s Reading package lists...
503s Building dependency tree...
503s Reading state information...
504s Solving dependencies...
505s The following packages will be REMOVED:
505s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
505s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
505s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
505s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
505s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
505s After this operation, 267 MB disk space will be freed.
505s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
505s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
505s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
505s Removing libpython3.12t64:arm64 (3.12.9-1) ...
505s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
505s Removing libnsl2:arm64 (1.3.0-3build3) ...
505s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
505s Removing libunwind8:arm64 (1.6.2-3.1) ...
505s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
506s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
508s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
508s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
508s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
508s /etc/kernel/postrm.d/initramfs-tools:
508s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
508s /etc/kernel/postrm.d/zz-flash-kernel:
508s flash-kernel: Kernel 6.11.0-8-generic has been removed.
508s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
509s /etc/kernel/postrm.d/zz-update-grub:
509s Sourcing file `/etc/default/grub'
509s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
509s Generating grub configuration file ...
509s Found linux image: /boot/vmlinuz-6.14.0-10-generic
509s Found initrd image: /boot/initrd.img-6.14.0-10-generic
509s Warning: os-prober will not be executed to detect other bootable partitions.
509s Systems on them will not be added to the GRUB boot configuration.
509s Check GRUB_DISABLE_OS_PROBER documentation entry.
509s Adding boot menu entry for UEFI Firmware Settings ...
509s done
509s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
509s Processing triggers for libc-bin (2.41-1ubuntu1) ...
510s (Reading database ... 
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(Reading database ... 30%
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81650 files and directories currently installed.)
510s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
510s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
510s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
510s autopkgtest [15:56:51]: upgrading testbed (apt dist-upgrade and autopurge)
510s Reading package lists...
510s Building dependency tree...
510s Reading state information...
511s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
511s Starting 2 pkgProblemResolver with broken count: 0
511s Done
512s Entering ResolveByKeep
512s 
512s Calculating upgrade...
513s The following packages will be upgraded:
513s   libc-bin libc-dev-bin libc6 libc6-dev locales
513s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
513s Need to get 9530 kB of archives.
513s After this operation, 0 B of additional disk space will be used.
513s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
515s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
515s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
518s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
519s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
524s Preconfiguring packages ...
524s Fetched 9530 kB in 11s (888 kB/s)
525s (Reading database ... 
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
525s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
525s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
525s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
525s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
525s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
525s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
526s Setting up libc6:arm64 (2.41-1ubuntu2) ...
526s (Reading database ... 
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
526s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
526s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
526s Setting up libc-bin (2.41-1ubuntu2) ...
526s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
526s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
526s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
526s Setting up locales (2.41-1ubuntu2) ...
528s Generating locales (this might take a while)...
530s   en_US.UTF-8... done
530s Generation complete.
530s Setting up libc-dev-bin (2.41-1ubuntu2) ...
530s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
530s Processing triggers for man-db (2.13.0-1) ...
532s Processing triggers for systemd (257.3-1ubuntu3) ...
533s Reading package lists...
534s Building dependency tree...
534s Reading state information...
534s Starting pkgProblemResolver with broken count: 0
534s Starting 2 pkgProblemResolver with broken count: 0
534s Done
535s Solving dependencies...
535s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
536s autopkgtest [15:57:17]: rebooting testbed after setup commands that affected boot
558s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
566s autopkgtest [15:57:47]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
569s autopkgtest [15:57:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-rann
571s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-rann 2.6.2-1 (dsc) [2067 B]
571s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-rann 2.6.2-1 (tar) [59.8 kB]
571s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-rann 2.6.2-1 (diff) [2692 B]
572s gpgv: Signature made Tue Sep  3 08:16:41 2024 UTC
572s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
572s gpgv:                issuer "plessy@debian.org"
572s gpgv: Can't check signature: No public key
572s dpkg-source: warning: cannot verify inline signature for ./r-cran-rann_2.6.2-1.dsc: no acceptable signature found
572s autopkgtest [15:57:53]: testing package r-cran-rann version 2.6.2-1
572s autopkgtest [15:57:53]: build not needed
574s autopkgtest [15:57:55]: test run-unit-test: preparing testbed
575s Reading package lists...
575s Building dependency tree...
575s Reading state information...
576s Starting pkgProblemResolver with broken count: 0
576s Starting 2 pkgProblemResolver with broken count: 0
576s Done
577s The following NEW packages will be installed:
577s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
577s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
577s   libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
577s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
577s   libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
577s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
577s   libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-brio r-cran-callr
577s   r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
577s   r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite r-cran-lifecycle
577s   r-cran-magrittr r-cran-pkgbuild r-cran-pkgload r-cran-praise r-cran-processx
577s   r-cran-ps r-cran-r6 r-cran-rann r-cran-rlang r-cran-rprojroot
577s   r-cran-testthat r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip
578s 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded.
578s Need to get 48.5 MB of archives.
578s After this operation, 97.0 MB of additional disk space will be used.
578s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
578s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
579s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
579s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
579s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
580s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
580s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
580s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
580s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
580s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
580s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
581s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
581s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
581s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
581s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
581s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
582s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
582s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
582s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
582s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
582s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
582s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
585s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
585s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
585s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
585s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
586s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
586s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
586s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
586s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
586s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
586s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
586s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
587s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
587s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
587s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
587s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
587s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
587s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
588s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
588s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
588s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
588s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
588s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
619s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
619s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB]
619s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
619s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB]
620s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
620s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
622s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
622s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
623s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
624s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
624s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
624s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
625s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
625s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
625s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
627s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
627s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
627s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
628s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
628s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
628s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
628s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
628s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rann arm64 2.6.2-1 [46.2 kB]
628s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB]
628s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
631s Preconfiguring packages ...
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631s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
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637s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
637s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
637s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
637s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
637s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
637s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
637s Setting up libxcb-render0:arm64 (1.17.0-2) ...
637s Setting up unzip (6.0-28ubuntu6) ...
637s Setting up x11-common (1:7.7+23ubuntu3) ...
638s Setting up libdeflate0:arm64 (1.23-1) ...
638s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
638s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
638s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
638s Setting up zip (3.0-14ubuntu2) ...
638s Setting up libblas3:arm64 (3.12.1-2) ...
638s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
638s Setting up fonts-dejavu-mono (2.37-8) ...
638s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
638s Setting up fonts-dejavu-core (2.37-8) ...
638s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
638s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
638s Setting up libwebp7:arm64 (1.5.0-0.1) ...
638s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
638s Setting up libthai-data (0.1.29-2build1) ...
638s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
638s Setting up libpaper2:arm64 (2.2.5-0.3) ...
638s Setting up xdg-utils (1.2.1-2ubuntu1) ...
638s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
638s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
638s Setting up libice6:arm64 (2:1.1.1-1) ...
638s Setting up liblapack3:arm64 (3.12.1-2) ...
638s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
638s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
638s Setting up libpaper-utils (2.2.5-0.3) ...
638s Setting up libthai0:arm64 (0.1.29-2build1) ...
638s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
638s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
638s Setting up libsm6:arm64 (2:1.2.4-1) ...
638s Setting up fontconfig (2.15.0-2ubuntu1) ...
640s Regenerating fonts cache... done.
640s Setting up libxft2:arm64 (2.3.6-1build1) ...
640s Setting up libtk8.6:arm64 (8.6.16-1) ...
640s Setting up libpango-1.0-0:arm64 (1.56.2-1) ...
640s Setting up libcairo2:arm64 (1.18.2-2) ...
640s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
640s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ...
640s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ...
640s Setting up r-base-core (4.4.3-1) ...
640s Creating config file /etc/R/Renviron with new version
641s Setting up r-cran-crayon (1.5.3-1) ...
641s Setting up r-cran-ps (1.9.0-1) ...
641s Setting up r-cran-r6 (2.6.1-1) ...
641s Setting up r-cran-magrittr (2.0.3-1) ...
641s Setting up r-cran-fs (1.6.5+dfsg-1) ...
641s Setting up r-cran-brio (1.1.5-1) ...
641s Setting up r-cran-diffobj (0.3.5-1) ...
641s Setting up r-cran-rlang (1.1.5-1) ...
641s Setting up r-cran-withr (3.0.2+dfsg-1) ...
641s Setting up r-cran-processx (3.8.6-1) ...
641s Setting up r-cran-praise (1.0.0-4build1) ...
641s Setting up r-cran-digest (0.6.37-1) ...
641s Setting up r-cran-rann (2.6.2-1) ...
641s Setting up r-cran-evaluate (1.0.3-1) ...
641s Setting up r-cran-glue (1.8.0-1) ...
641s Setting up r-cran-cli (3.6.4-1) ...
641s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
641s Setting up r-cran-rprojroot (2.0.4-2) ...
641s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
641s Setting up r-cran-waldo (0.6.1-2) ...
641s Setting up r-cran-callr (3.7.6-1) ...
641s Setting up r-cran-desc (1.4.3-1) ...
641s Setting up r-cran-pkgbuild (1.4.6-1) ...
641s Setting up r-cran-pkgload (1.4.0-1) ...
641s Setting up r-cran-testthat (3.2.3-1) ...
641s Processing triggers for libc-bin (2.41-1ubuntu2) ...
641s Processing triggers for man-db (2.13.0-1) ...
642s Processing triggers for install-info (7.1.1-1) ...
644s autopkgtest [15:59:05]: test run-unit-test: [-----------------------
644s BEGIN TEST testthat.R
644s 
644s R version 4.4.3 (2025-02-28) -- "Trophy Case"
644s Copyright (C) 2025 The R Foundation for Statistical Computing
644s Platform: aarch64-unknown-linux-gnu
644s 
644s R is free software and comes with ABSOLUTELY NO WARRANTY.
644s You are welcome to redistribute it under certain conditions.
644s Type 'license()' or 'licence()' for distribution details.
644s 
644s R is a collaborative project with many contributors.
644s Type 'contributors()' for more information and
644s 'citation()' on how to cite R or R packages in publications.
644s 
644s Type 'demo()' for some demos, 'help()' for on-line help, or
644s 'help.start()' for an HTML browser interface to help.
644s Type 'q()' to quit R.
644s 
644s > library(testthat)
645s > library(RANN)
645s > 
645s > test_check("RANN")
645s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
645s > 
646s autopkgtest [15:59:07]: test run-unit-test: -----------------------]
646s autopkgtest [15:59:07]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
646s run-unit-test        PASS
647s autopkgtest [15:59:08]: test pkg-r-autopkgtest: preparing testbed
647s Reading package lists...
648s Building dependency tree...
648s Reading state information...
648s Starting pkgProblemResolver with broken count: 0
649s Starting 2 pkgProblemResolver with broken count: 0
649s Done
651s The following NEW packages will be installed:
651s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
651s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
651s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
651s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
651s   libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
651s   libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
651s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
651s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
651s   libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
651s   libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev
651s   zlib1g-dev
651s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded.
651s Need to get 92.7 MB of archives.
651s After this operation, 334 MB of additional disk space will be used.
651s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
652s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
652s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
663s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
663s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
663s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
663s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
663s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
664s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
666s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
667s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
670s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
672s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
673s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
676s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
699s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
700s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
700s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
700s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
703s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
717s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
717s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
717s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
717s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
717s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
717s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
718s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
732s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
732s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
732s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
732s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
732s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
732s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
732s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
732s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
747s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
747s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
747s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
747s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
753s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
753s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
754s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
754s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
754s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
755s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
755s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
756s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
756s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
757s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
757s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
757s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
757s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
757s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
757s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
758s Fetched 92.7 MB in 1min 47s (867 kB/s)
758s Selecting previously unselected package libisl23:arm64.
758s (Reading database ... 
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(Reading database ... 86562 files and directories currently installed.)
758s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
758s Unpacking libisl23:arm64 (0.27-1) ...
758s Selecting previously unselected package libmpc3:arm64.
758s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
758s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
758s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
758s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
758s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
759s Selecting previously unselected package cpp-14.
759s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
759s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
759s Selecting previously unselected package cpp-aarch64-linux-gnu.
759s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
759s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
759s Selecting previously unselected package cpp.
759s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
759s Unpacking cpp (4:14.2.0-1ubuntu1) ...
759s Selecting previously unselected package libcc1-0:arm64.
759s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
759s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
759s Selecting previously unselected package libitm1:arm64.
759s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb ...
759s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
759s Selecting previously unselected package libasan8:arm64.
759s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ...
759s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
759s Selecting previously unselected package liblsan0:arm64.
759s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
759s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
759s Selecting previously unselected package libtsan2:arm64.
759s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
759s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
759s Selecting previously unselected package libubsan1:arm64.
759s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
759s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
759s Selecting previously unselected package libhwasan0:arm64.
760s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
760s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
760s Selecting previously unselected package libgcc-14-dev:arm64.
760s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
760s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
760s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
760s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
760s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
760s Selecting previously unselected package gcc-14.
760s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
760s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
760s Selecting previously unselected package gcc-aarch64-linux-gnu.
760s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
760s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
760s Selecting previously unselected package gcc.
760s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
760s Unpacking gcc (4:14.2.0-1ubuntu1) ...
760s Selecting previously unselected package libstdc++-14-dev:arm64.
760s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
760s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
761s Selecting previously unselected package g++-14-aarch64-linux-gnu.
761s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
761s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
761s Selecting previously unselected package g++-14.
761s Preparing to unpack .../20-g++-14_14.2.0-17ubuntu3_arm64.deb ...
761s Unpacking g++-14 (14.2.0-17ubuntu3) ...
761s Selecting previously unselected package g++-aarch64-linux-gnu.
761s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
761s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
761s Selecting previously unselected package g++.
761s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
761s Unpacking g++ (4:14.2.0-1ubuntu1) ...
761s Selecting previously unselected package build-essential.
761s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ...
761s Unpacking build-essential (12.10ubuntu1) ...
761s Selecting previously unselected package dctrl-tools.
761s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ...
761s Unpacking dctrl-tools (2.24-3build3) ...
761s Selecting previously unselected package libgfortran-14-dev:arm64.
761s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
761s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
762s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
762s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
762s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
762s Selecting previously unselected package gfortran-14.
762s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
762s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
762s Selecting previously unselected package gfortran-aarch64-linux-gnu.
762s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
762s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
762s Selecting previously unselected package gfortran.
762s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
762s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
762s Selecting previously unselected package icu-devtools.
762s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ...
762s Unpacking icu-devtools (76.1-1ubuntu2) ...
762s Selecting previously unselected package libblas-dev:arm64.
762s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ...
762s Unpacking libblas-dev:arm64 (3.12.1-2) ...
762s Selecting previously unselected package libbz2-dev:arm64.
762s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ...
762s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
762s Selecting previously unselected package libdeflate-dev:arm64.
762s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ...
762s Unpacking libdeflate-dev:arm64 (1.23-1) ...
762s Selecting previously unselected package libicu-dev:arm64.
762s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ...
762s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
763s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
763s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
763s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
763s Selecting previously unselected package libjpeg8-dev:arm64.
763s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
763s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
763s Selecting previously unselected package libjpeg-dev:arm64.
763s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
763s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
763s Selecting previously unselected package liblapack-dev:arm64.
763s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ...
763s Unpacking liblapack-dev:arm64 (3.12.1-2) ...
763s Selecting previously unselected package libncurses-dev:arm64.
763s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ...
763s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ...
763s Selecting previously unselected package libpcre2-16-0:arm64.
763s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ...
763s Unpacking libpcre2-16-0:arm64 (10.45-1) ...
763s Selecting previously unselected package libpcre2-32-0:arm64.
763s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ...
763s Unpacking libpcre2-32-0:arm64 (10.45-1) ...
763s Selecting previously unselected package libpcre2-posix3:arm64.
763s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ...
763s Unpacking libpcre2-posix3:arm64 (10.45-1) ...
763s Selecting previously unselected package libpcre2-dev:arm64.
763s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ...
763s Unpacking libpcre2-dev:arm64 (10.45-1) ...
763s Selecting previously unselected package libpkgconf3:arm64.
764s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ...
764s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
764s Selecting previously unselected package zlib1g-dev:arm64.
764s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
764s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
764s Selecting previously unselected package libpng-dev:arm64.
764s Preparing to unpack .../46-libpng-dev_1.6.47-1_arm64.deb ...
764s Unpacking libpng-dev:arm64 (1.6.47-1) ...
764s Selecting previously unselected package libreadline-dev:arm64.
764s Preparing to unpack .../47-libreadline-dev_8.2-6_arm64.deb ...
764s Unpacking libreadline-dev:arm64 (8.2-6) ...
764s Selecting previously unselected package liblzma-dev:arm64.
764s Preparing to unpack .../48-liblzma-dev_5.6.4-1_arm64.deb ...
764s Unpacking liblzma-dev:arm64 (5.6.4-1) ...
764s Selecting previously unselected package pkgconf-bin.
764s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ...
764s Unpacking pkgconf-bin (1.8.1-4) ...
764s Selecting previously unselected package pkgconf:arm64.
764s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ...
764s Unpacking pkgconf:arm64 (1.8.1-4) ...
764s Selecting previously unselected package libtirpc-dev:arm64.
764s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
764s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
764s Selecting previously unselected package r-base-dev.
764s Preparing to unpack .../52-r-base-dev_4.4.3-1_all.deb ...
764s Unpacking r-base-dev (4.4.3-1) ...
764s Selecting previously unselected package pkg-r-autopkgtest.
764s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
764s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
764s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
764s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
764s Setting up libreadline-dev:arm64 (8.2-6) ...
764s Setting up libpcre2-16-0:arm64 (10.45-1) ...
764s Setting up libpcre2-32-0:arm64 (10.45-1) ...
764s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
764s Setting up libpkgconf3:arm64 (1.8.1-4) ...
764s Setting up libmpc3:arm64 (1.3.1-1build2) ...
764s Setting up icu-devtools (76.1-1ubuntu2) ...
764s Setting up pkgconf-bin (1.8.1-4) ...
764s Setting up liblzma-dev:arm64 (5.6.4-1) ...
764s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
764s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
764s Setting up libpcre2-posix3:arm64 (10.45-1) ...
764s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
764s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
764s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
764s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
764s Setting up libisl23:arm64 (0.27-1) ...
764s Setting up libdeflate-dev:arm64 (1.23-1) ...
764s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
764s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
764s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
764s Setting up libblas-dev:arm64 (3.12.1-2) ...
764s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
764s Setting up dctrl-tools (2.24-3build3) ...
764s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ...
764s Setting up libbz2-dev:arm64 (1.0.8-6) ...
764s Setting up libpcre2-dev:arm64 (10.45-1) ...
764s Setting up libpng-dev:arm64 (1.6.47-1) ...
764s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
764s Setting up pkgconf:arm64 (1.8.1-4) ...
764s Setting up liblapack-dev:arm64 (3.12.1-2) ...
764s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
764s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
764s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
764s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
764s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
764s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
764s Setting up cpp-14 (14.2.0-17ubuntu3) ...
764s Setting up cpp (4:14.2.0-1ubuntu1) ...
764s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
764s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
764s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
764s Setting up gcc-14 (14.2.0-17ubuntu3) ...
764s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
764s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
764s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
764s Setting up g++-14 (14.2.0-17ubuntu3) ...
764s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
764s Setting up gcc (4:14.2.0-1ubuntu1) ...
764s Setting up g++ (4:14.2.0-1ubuntu1) ...
764s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
764s Setting up build-essential (12.10ubuntu1) ...
764s Setting up gfortran (4:14.2.0-1ubuntu1) ...
764s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
764s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
764s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
764s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
764s Setting up r-base-dev (4.4.3-1) ...
764s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
764s Processing triggers for libc-bin (2.41-1ubuntu2) ...
764s Processing triggers for man-db (2.13.0-1) ...
765s Processing triggers for install-info (7.1.1-1) ...
767s autopkgtest [16:01:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
767s autopkgtest [16:01:08]: test pkg-r-autopkgtest: [-----------------------
767s Test: Try to load the R library RANN
767s 
767s R version 4.4.3 (2025-02-28) -- "Trophy Case"
767s Copyright (C) 2025 The R Foundation for Statistical Computing
767s Platform: aarch64-unknown-linux-gnu
767s 
767s R is free software and comes with ABSOLUTELY NO WARRANTY.
767s You are welcome to redistribute it under certain conditions.
767s Type 'license()' or 'licence()' for distribution details.
767s 
767s R is a collaborative project with many contributors.
767s Type 'contributors()' for more information and
767s 'citation()' on how to cite R or R packages in publications.
767s 
767s Type 'demo()' for some demos, 'help()' for on-line help, or
767s 'help.start()' for an HTML browser interface to help.
767s Type 'q()' to quit R.
767s 
767s > library('RANN')
767s > 
767s > 
767s Other tests are currently unsupported!
767s They will be progressively added.
768s autopkgtest [16:01:09]: test pkg-r-autopkgtest: -----------------------]
768s autopkgtest [16:01:09]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
768s pkg-r-autopkgtest    PASS
769s autopkgtest [16:01:10]: @@@@@@@@@@@@@@@@@@@@ summary
769s run-unit-test        PASS
769s pkg-r-autopkgtest    PASS
774s nova [W] Using flock in prodstack6-arm64
774s flock: timeout while waiting to get lock
774s Creating nova instance adt-plucky-arm64-r-cran-rann-20250315-154820-juju-7f2275-prod-proposed-migration-environment-2-5b9e6acc-a67c-4be4-95ea-043b7b664321 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
774s nova [W] nova quota exceeded (attempt #0)
774s nova [W] Timed out waiting for 5ba7ab81-5315-4bad-9042-c02600752b29 to get deleted.