0s autopkgtest [15:47:36]: starting date and time: 2025-03-15 15:47:36+0000 0s autopkgtest [15:47:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:47:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wbpu2nhr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-psychotools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-8.secgroup --name adt-plucky-arm64-r-cran-psychotools-20250315-154735-juju-7f2275-prod-proposed-migration-environment-2-86abc205-4f2d-47a0-a1f5-a8e15d821682 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 189s autopkgtest [15:50:45]: testbed dpkg architecture: arm64 190s autopkgtest [15:50:46]: testbed apt version: 2.9.33 190s autopkgtest [15:50:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 190s autopkgtest [15:50:46]: testbed release detected to be: None 191s autopkgtest [15:50:47]: updating testbed package index (apt update) 191s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 192s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 192s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 192s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 192s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 192s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 192s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 192s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 193s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 193s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 193s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 193s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 193s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 193s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 193s Fetched 1078 kB in 2s (638 kB/s) 194s Reading package lists... 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s Calculating upgrade... 196s Calculating upgrade... 197s The following packages will be upgraded: 197s pinentry-curses python3-jinja2 strace 197s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Need to get 647 kB of archives. 197s After this operation, 11.3 kB of additional disk space will be used. 197s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 198s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 199s Fetched 647 kB in 1s (566 kB/s) 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 199s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 199s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 199s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 199s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 199s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 199s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 199s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 199s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 200s Setting up strace (6.13+ds-1ubuntu1) ... 200s Processing triggers for man-db (2.13.0-1) ... 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 202s Solving dependencies... 202s The following packages will be REMOVED: 202s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 202s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 202s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 202s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 203s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 203s After this operation, 267 MB disk space will be freed. 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 203s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 203s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 203s Removing libpython3.12t64:arm64 (3.12.9-1) ... 203s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 203s Removing libnsl2:arm64 (1.3.0-3build3) ... 203s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 203s Removing libunwind8:arm64 (1.6.2-3.1) ... 203s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 204s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 206s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 206s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 206s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 206s /etc/kernel/postrm.d/initramfs-tools: 206s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 206s /etc/kernel/postrm.d/zz-flash-kernel: 206s flash-kernel: Kernel 6.11.0-8-generic has been removed. 206s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 207s /etc/kernel/postrm.d/zz-update-grub: 207s Sourcing file `/etc/default/grub' 207s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 207s Generating grub configuration file ... 207s Found linux image: /boot/vmlinuz-6.14.0-10-generic 207s Found initrd image: /boot/initrd.img-6.14.0-10-generic 207s Warning: os-prober will not be executed to detect other bootable partitions. 207s Systems on them will not be added to the GRUB boot configuration. 207s Check GRUB_DISABLE_OS_PROBER documentation entry. 207s Adding boot menu entry for UEFI Firmware Settings ... 208s done 208s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 208s Processing triggers for libc-bin (2.41-1ubuntu1) ... 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 208s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 208s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 208s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 208s autopkgtest [15:51:04]: upgrading testbed (apt dist-upgrade and autopurge) 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 210s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 210s Starting 2 pkgProblemResolver with broken count: 0 210s Done 211s Entering ResolveByKeep 212s 212s Calculating upgrade... 213s The following packages will be upgraded: 213s libc-bin libc-dev-bin libc6 libc6-dev locales 213s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s Need to get 9530 kB of archives. 213s After this operation, 0 B of additional disk space will be used. 213s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 215s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 215s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 219s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 219s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 224s Preconfiguring packages ... 225s Fetched 9530 kB in 11s (878 kB/s) 225s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 225s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 225s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 225s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 225s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 225s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 225s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 225s Setting up libc6:arm64 (2.41-1ubuntu2) ... 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 226s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 226s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 226s Setting up libc-bin (2.41-1ubuntu2) ... 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 226s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 226s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 226s Setting up locales (2.41-1ubuntu2) ... 228s Generating locales (this might take a while)... 229s en_US.UTF-8... done 229s Generation complete. 229s Setting up libc-dev-bin (2.41-1ubuntu2) ... 229s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 230s Processing triggers for man-db (2.13.0-1) ... 231s Processing triggers for systemd (257.3-1ubuntu3) ... 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 232s Starting pkgProblemResolver with broken count: 0 233s Starting 2 pkgProblemResolver with broken count: 0 233s Done 233s Solving dependencies... 234s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 234s autopkgtest [15:51:30]: rebooting testbed after setup commands that affected boot 258s autopkgtest [15:51:54]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 261s autopkgtest [15:51:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-psychotools 264s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-psychotools 0.7-4-1 (dsc) [2183 B] 264s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-psychotools 0.7-4-1 (tar) [439 kB] 264s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-psychotools 0.7-4-1 (diff) [3252 B] 264s gpgv: Signature made Wed Jan 22 23:40:08 2025 UTC 264s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 264s gpgv: issuer "plessy@debian.org" 264s gpgv: Can't check signature: No public key 264s dpkg-source: warning: cannot verify inline signature for ./r-cran-psychotools_0.7-4-1.dsc: no acceptable signature found 264s autopkgtest [15:52:00]: testing package r-cran-psychotools version 0.7-4-1 265s autopkgtest [15:52:01]: build not needed 267s autopkgtest [15:52:03]: test run-unit-test: preparing testbed 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 268s Starting pkgProblemResolver with broken count: 0 268s Starting 2 pkgProblemResolver with broken count: 0 268s Done 270s The following NEW packages will be installed: 270s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 270s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 270s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 270s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 270s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 270s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 270s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-codetools 270s r-cran-formula r-cran-lattice r-cran-mass r-cran-matrix r-cran-multcomp 270s r-cran-mvtnorm r-cran-psychotools r-cran-sandwich r-cran-survival 270s r-cran-th.data r-cran-zoo unzip x11-common xdg-utils zip 270s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 270s Need to get 67.2 MB of archives. 270s After this operation, 117 MB of additional disk space will be used. 270s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 271s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 272s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 272s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 272s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 273s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 273s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 273s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 273s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 273s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 273s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 274s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 274s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 274s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 274s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 274s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 274s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 275s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 275s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 275s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 275s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 275s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 278s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 278s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 279s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 279s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 279s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 279s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 279s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 279s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 279s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 279s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 279s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 280s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 280s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 280s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 281s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 281s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 281s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 282s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 282s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 282s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 282s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 282s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 312s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 312s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 313s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 314s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 315s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 320s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB] 321s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 329s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-th.data all 1.1-3-1 [8723 kB] 339s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-zoo arm64 1.8-13-1 [996 kB] 341s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sandwich all 3.1-1-1 [1483 kB] 342s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-multcomp all 1.4-28-1 [700 kB] 343s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-psychotools arm64 0.7-4-1 [1093 kB] 345s Preconfiguring packages ... 345s Fetched 67.2 MB in 1min 14s (911 kB/s) 345s Selecting previously unselected package fonts-dejavu-mono. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 345s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 345s Unpacking fonts-dejavu-mono (2.37-8) ... 345s Selecting previously unselected package fonts-dejavu-core. 345s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 345s Unpacking fonts-dejavu-core (2.37-8) ... 345s Selecting previously unselected package fontconfig-config. 345s Preparing to unpack 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r-cran-th.data (1.1-3-1) ... 353s Setting up r-cran-multcomp (1.4-28-1) ... 353s Processing triggers for libc-bin (2.41-1ubuntu2) ... 353s Processing triggers for man-db (2.13.0-1) ... 355s Processing triggers for install-info (7.1.1-1) ... 356s autopkgtest [15:53:32]: test run-unit-test: [----------------------- 356s BEGIN TEST elementary_symmetric_functions.R 357s 357s R version 4.4.3 (2025-02-28) -- "Trophy Case" 357s Copyright (C) 2025 The R Foundation for Statistical Computing 357s Platform: aarch64-unknown-linux-gnu 357s 357s R is free software and comes with ABSOLUTELY NO WARRANTY. 357s You are welcome to redistribute it under certain conditions. 357s Type 'license()' or 'licence()' for distribution details. 357s 357s R is a collaborative project with many contributors. 357s Type 'contributors()' for more information and 357s 'citation()' on how to cite R or R packages in publications. 357s 357s Type 'demo()' for some demos, 'help()' for on-line help, or 357s 'help.start()' for an HTML browser interface to help. 357s Type 'q()' to quit R. 357s 357s > ##### several checks for function elementary_symmetric_functions() 357s > ##### 2012/09/07, BAEK 357s > 357s > 357s > ##### preliminaries 357s > library("psychotools") 357s > set.seed(1) 357s > 357s > 357s > ################################################## 357s > ##### dichotomous items (zero and first order derivatives) 357s > ################################################## 357s > di10 <- runif(10, -2.5, 2.5) 357s > di20 <- runif(20, -2.5, 2.5) 357s > elementary_symmetric_functions(di10) 357s $`0` 357s [1] 1.000000e+00 2.055532e+01 1.538662e+02 5.492526e+02 1.018398e+03 357s [6] 1.017086e+03 5.636905e+02 1.734870e+02 2.864725e+01 2.360797e+00 357s [11] 7.610103e-02 357s 357s > elementary_symmetric_functions(di20) 357s $`0` 357s [1] 1.000000e+00 4.717688e+01 9.808555e+02 1.197632e+04 9.635106e+04 357s [6] 5.424130e+05 2.212806e+06 6.680286e+06 1.510344e+07 2.571547e+07 357s [11] 3.299332e+07 3.179465e+07 2.286777e+07 1.216735e+07 4.734880e+06 357s [16] 1.326946e+06 2.618302e+05 3.511236e+04 3.015438e+03 1.481147e+02 357s [21] 3.135644e+00 357s 357s > 357s > ## with 10 items, everything is fine 357s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = FALSE)) # R-bin sum vs. C sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = TRUE)) # R-bin sum vs. C diff 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = FALSE)) # R-bin diff vs. C sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = TRUE)) # R-bin diff vs. C diff 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE)) # R-poly sum vs. R-bin sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE)) # R-poly sum vs. R-bin diff 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE)) # R-poly diff vs. R-bin sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE)) # R-poly diff vs. R-bin diff 357s [1] TRUE 357s > 357s > ## with 20 items we get (rounding) errors for difference algorithm :) 357s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = FALSE)) # R-bin sum vs. C sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = TRUE)) # R-bin sum vs. C diff 357s [1] "Component “1”: Mean relative difference: 0.0005072323" 357s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = FALSE)) # R-bin diff vs. C sum 357s [1] "Component “1”: 'is.NA' value mismatch: 0 in current 1 in target" 357s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = TRUE)) # R-bin diff vs. C diff 357s [1] "Component “1”: 'is.NA' value mismatch: 0 in current 1 in target" 357s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE)) # R-poly sum vs. R-bin sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE)) # R-poly sum vs. R-bin diff 357s Warning message: 357s In log(gamma1) : NaNs produced 357s Warning message: 357s In log(gamma1) : NaNs produced 357s [1] "Component “1”: 'is.NA' value mismatch: 1 in current 0 in target" 357s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE)) # R-poly diff vs. R-bin sum 357s Warning message: 357s In log(gamma1) : NaNs produced 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE)) # R-poly diff vs. R-bin diff 357s [1] "Component “1”: 'is.NA' value mismatch: 1 in current 0 in target" 357s > 357s > ## second order derivatives (only implemented for R-bin sum/diff) 357s > all.equal(elementary_symmetric_functions(di10, order = 2, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 2, engine = "R", diff = TRUE)) # R-bin sum vs. R-bin diff 357s Warning message: 357s In log(gamma1) : NaNs produced 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(di20, order = 2, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 2, engine = "R", diff = TRUE)) # R-bin sum vs. R-bin diff 357s [1] "Component “0”: Numeric: lengths (21, 11) differ" 357s [2] "Component “1”: Attributes: < Component “dim”: Mean relative difference: 0.4878049 >" 357s [3] "Component “1”: Numeric: lengths (420, 110) differ" 357s [4] "Component “2”: Attributes: < Component “dim”: Mean relative difference: 0.4918033 >" 357s [5] "Component “2”: Numeric: lengths (8400, 1100) differ" 357s > 357s > 357s > ################################################## 357s > ##### polytomous items (zero and first order derivatives) 357s > ################################################## 357s > pi10 <- unname(split(runif(10, -2.5, 2.5), factor(rep(1:5, each = 2)))) 357s > pi20 <- unname(split(runif(20, -2.5, 2.5), factor(rep(1:10, each = 2)))) 357s > elementary_symmetric_functions(pi10) 357s $`0` 357s [1] 1.000000 2.877547 17.409618 35.128538 93.142712 122.857021 357s [7] 166.381830 135.480720 95.407269 37.673980 13.910708 357s 357s > elementary_symmetric_functions(pi20) 357s $`0` 357s [1] 1.000000e+00 2.644761e+01 2.657538e+02 1.418158e+03 5.094068e+03 357s [6] 1.364425e+04 2.853812e+04 4.831630e+04 6.757728e+04 7.900700e+04 357s [11] 7.790678e+04 6.498572e+04 4.579809e+04 2.714372e+04 1.337284e+04 357s [16] 5.374640e+03 1.709608e+03 4.077618e+02 6.617534e+01 6.150293e+00 357s [21] 2.341581e-01 357s 357s > 357s > ## with 10 items, everything is fine. 357s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = FALSE)) # R-poly sum vs. C sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = TRUE)) # R-poly sum vs. C diff 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = FALSE)) # R-poly diff vs. C sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = TRUE)) # R-poly diff vs. C diff 357s [1] TRUE 357s > 357s > ## with 20 items we get (rounding) errors for difference algorithm :) 357s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = FALSE)) # R-poly sum vs. C sum 357s [1] TRUE 357s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = TRUE)) # R-poly sum vs. C diff 357s [1] "Component “1”: Mean relative difference: 0.002305129" 357s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = FALSE)) # R-poly diff vs. C sum 357s [1] "Component “1”: Mean relative difference: 0.002175898" 357s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = TRUE)) # R-poly diff vs. C diff 357s [1] "Component “1”: Mean relative difference: 0.004775475" 357s > 357s > 357s > ################################################## 357s > ##### check 'check' 357s > ################################################## 357s > all.equal(elementary_symmetric_functions(di10, order = 1), elementary_symmetric_functions(as.list(di10), order = 1)) # dichotomous items as list / vector 357s [1] TRUE 357s > inherits(try(elementary_symmetric_functions(di10, log = FALSE, engine = "C")), "try-error") # input on log scale for dichotmous items not possible (engine C) 357s [1] TRUE 357s > inherits(try(elementary_symmetric_functions(pi10, log = FALSE, engine = "R")), "try-error") # input on log scale for polytomous items not possible (engine R) 357s Error in elementary_symmetric_functions(di10, log = FALSE, engine = "C") : 357s log is not TRUE 357s Error in elementary_symmetric_functions(pi10, log = FALSE, engine = "R") : 357s log is not TRUE 357s [1] TRUE 357s > inherits(try(elementary_symmetric_functions(pi10, log = FALSE, engine = "C")), "try-error") # input on log scale for polytomous items not possible (engine C) 357s [1] TRUE 357s > inherits(try(elementary_symmetric_functions(di10, order = 2, engine = "C")), "try-error") # second order derivatives for dichotmous items not possible (engine C) 357s Error in elementary_symmetric_functions(pi10, log = FALSE, engine = "C") : 357s log is not TRUE 357s Warning message: 357s In elementary_symmetric_functions(di10, order = 2, engine = "C") : 357s Second order ESFs are not available in C, changed to R. 357s [1] FALSE 357s > inherits(try(elementary_symmetric_functions(pi10, order = 2, engine = "R")), "try-error") # second order derivatives for polytomous items not possible (engine R) 357s Error in elementary_symmetric_functions(pi10, order = 2, engine = "R") : 357s Second order ESFs are not available for polytomous items. 357s Error in elementary_symmetric_functions(pi10, order = 2, engine = "C") : 357s Second order ESFs are not available for polytomous items. 357s [1] TRUE 357s > inherits(try(elementary_symmetric_functions(pi10, order = 2, engine = "C")), "try-error") # second order derivatives for polytomous items not possible (engine C) 357s [1] TRUE 357s > 357s autopkgtest [15:53:33]: test run-unit-test: -----------------------] 358s run-unit-test PASS 358s autopkgtest [15:53:34]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 358s autopkgtest [15:53:34]: test pkg-r-autopkgtest: preparing testbed 359s Reading package lists... 359s Building dependency tree... 359s Reading state information... 360s Starting pkgProblemResolver with broken count: 0 360s Starting 2 pkgProblemResolver with broken count: 0 360s Done 362s The following NEW packages will be installed: 362s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 362s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 362s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 362s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 362s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 362s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 362s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 362s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 362s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 362s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 362s zlib1g-dev 362s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 362s Need to get 92.7 MB of archives. 362s After this operation, 334 MB of additional disk space will be used. 362s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 363s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 363s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 374s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 374s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 374s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 374s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 374s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 374s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 377s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 379s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 381s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 382s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 384s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 387s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 409s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 410s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 410s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 410s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 412s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 425s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 425s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 425s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 425s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 425s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 425s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 426s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 438s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 438s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 438s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 438s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 438s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 439s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 439s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 439s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 452s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 452s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 452s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 452s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 457s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 457s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 458s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 458s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 458s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 459s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 459s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 460s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 460s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 460s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 460s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 460s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 460s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 461s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 461s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 461s Fetched 92.7 MB in 1min 39s (937 kB/s) 461s Selecting previously unselected package libisl23:arm64. 461s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84635 files and directories currently installed.) 461s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 461s Unpacking libisl23:arm64 (0.27-1) ... 461s Selecting previously unselected package libmpc3:arm64. 461s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 461s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 461s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 461s Preparing to unpack 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... 464s Selecting previously unselected package build-essential. 464s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 464s Unpacking build-essential (12.10ubuntu1) ... 464s Selecting previously unselected package dctrl-tools. 464s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 464s Unpacking dctrl-tools (2.24-3build3) ... 464s Selecting previously unselected package libgfortran-14-dev:arm64. 464s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 464s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 464s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 464s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 464s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 464s Selecting previously unselected package gfortran-14. 464s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 464s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 464s Selecting previously unselected package gfortran-aarch64-linux-gnu. 464s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 464s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 464s Selecting previously unselected package gfortran. 464s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 464s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 464s Selecting previously unselected package icu-devtools. 464s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 464s Unpacking icu-devtools (76.1-1ubuntu2) ... 464s Selecting previously unselected package libblas-dev:arm64. 464s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 464s Unpacking libblas-dev:arm64 (3.12.1-2) ... 464s Selecting previously unselected package libbz2-dev:arm64. 465s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 465s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 465s Selecting previously unselected package libdeflate-dev:arm64. 465s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 465s Unpacking libdeflate-dev:arm64 (1.23-1) ... 465s Selecting previously unselected package libicu-dev:arm64. 465s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 465s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 465s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 465s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 465s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 465s Selecting previously unselected package libjpeg8-dev:arm64. 465s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 465s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 465s Selecting previously unselected package libjpeg-dev:arm64. 465s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 465s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 465s Selecting previously unselected package liblapack-dev:arm64. 465s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 465s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 465s Selecting previously unselected package libncurses-dev:arm64. 465s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 465s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 465s Selecting previously unselected package libpcre2-16-0:arm64. 465s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 465s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 465s Selecting previously unselected package libpcre2-32-0:arm64. 465s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 465s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 465s Selecting previously unselected package libpcre2-posix3:arm64. 465s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 465s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 465s Selecting previously unselected package libpcre2-dev:arm64. 465s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 465s 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libreadline-dev:arm64 (8.2-6) ... 466s Setting up libpcre2-16-0:arm64 (10.45-1) ... 466s Setting up libpcre2-32-0:arm64 (10.45-1) ... 466s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 466s Setting up libpkgconf3:arm64 (1.8.1-4) ... 466s Setting up libmpc3:arm64 (1.3.1-1build2) ... 466s Setting up icu-devtools (76.1-1ubuntu2) ... 466s Setting up pkgconf-bin (1.8.1-4) ... 466s Setting up liblzma-dev:arm64 (5.6.4-1) ... 466s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 466s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 466s Setting up libpcre2-posix3:arm64 (10.45-1) ... 466s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 466s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 466s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 466s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 466s Setting up libisl23:arm64 (0.27-1) ... 466s Setting up libdeflate-dev:arm64 (1.23-1) ... 466s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 466s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 466s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 466s Setting up libblas-dev:arm64 (3.12.1-2) ... 466s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 466s Setting up dctrl-tools (2.24-3build3) ... 466s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 466s Setting up libbz2-dev:arm64 (1.0.8-6) ... 466s Setting up libpcre2-dev:arm64 (10.45-1) ... 466s Setting up libpng-dev:arm64 (1.6.47-1) ... 466s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 466s Setting up pkgconf:arm64 (1.8.1-4) ... 466s Setting up liblapack-dev:arm64 (3.12.1-2) ... 466s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 466s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 466s Setting up libgcc-14-dev:arm64 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auto mode 466s Setting up build-essential (12.10ubuntu1) ... 466s Setting up gfortran (4:14.2.0-1ubuntu1) ... 466s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 466s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 466s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 466s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 466s Setting up r-base-dev (4.4.3-1) ... 466s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 466s Processing triggers for libc-bin (2.41-1ubuntu2) ... 466s Processing triggers for man-db (2.13.0-1) ... 467s Processing triggers for install-info (7.1.1-1) ... 469s autopkgtest [15:55:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 469s autopkgtest [15:55:25]: test pkg-r-autopkgtest: [----------------------- 469s Test: Try to load the R library psychotools 469s 469s R version 4.4.3 (2025-02-28) -- "Trophy Case" 469s Copyright (C) 2025 The R Foundation for Statistical Computing 469s Platform: aarch64-unknown-linux-gnu 469s 469s R is free software and comes with ABSOLUTELY NO WARRANTY. 469s You are welcome to redistribute it under certain conditions. 469s Type 'license()' or 'licence()' for distribution details. 469s 469s R is a collaborative project with many contributors. 469s Type 'contributors()' for more information and 469s 'citation()' on how to cite R or R packages in publications. 469s 469s Type 'demo()' for some demos, 'help()' for on-line help, or 469s 'help.start()' for an HTML browser interface to help. 469s Type 'q()' to quit R. 469s 469s > library('psychotools') 469s > 469s > 469s Other tests are currently unsupported! 469s They will be progressively added. 469s autopkgtest [15:55:25]: test pkg-r-autopkgtest: -----------------------] 470s autopkgtest [15:55:26]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 470s pkg-r-autopkgtest PASS 470s autopkgtest [15:55:26]: @@@@@@@@@@@@@@@@@@@@ summary 470s run-unit-test PASS 470s pkg-r-autopkgtest PASS 475s nova [W] Using flock in prodstack6-arm64 475s Creating nova instance adt-plucky-arm64-r-cran-psychotools-20250315-154735-juju-7f2275-prod-proposed-migration-environment-2-86abc205-4f2d-47a0-a1f5-a8e15d821682 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 475s nova [W] Timed out waiting for 538d5d6d-ff1f-48d2-bfc9-3da0ecdd3777 to get deleted.