0s autopkgtest [13:40:48]: starting date and time: 2025-02-21 13:40:48+0000
  1s autopkgtest [13:40:49]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [13:40:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k7qovlxb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:build-essential --apt-upgrade r-cran-polycub --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=build-essential/12.12 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-8.secgroup --name adt-plucky-arm64-r-cran-polycub-20250221-134048-juju-7f2275-prod-proposed-migration-environment-20-e44827d2-b5c1-4190-ad34-fd79b43df69e --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
104s autopkgtest [13:42:32]: testbed dpkg architecture: arm64
104s autopkgtest [13:42:32]: testbed apt version: 2.9.30ubuntu1
105s autopkgtest [13:42:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup
105s autopkgtest [13:42:33]: testbed release detected to be: None
106s autopkgtest [13:42:34]: updating testbed package index (apt update)
106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
106s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.3 kB]
107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.8 kB]
107s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [719 kB]
107s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [132 kB]
107s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B]
107s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [677 kB]
108s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [10.7 kB]
108s Fetched 1765 kB in 2s (868 kB/s)
110s Reading package lists...
110s W: Target Sources (main/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (restricted/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (universe/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (multiverse/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (main/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (restricted/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (universe/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Sources (multiverse/source/Sources) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (main/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (main/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (restricted/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (restricted/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (universe/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (universe/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (multiverse/binary-arm64/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (multiverse/cnf/Commands-arm64) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:1 and /etc/apt/sources.list.d/autopkgtest-add-apt-release-plucky-proposed.sources:2
110s Reading package lists...
111s Building dependency tree...
111s Reading state information...
111s Calculating upgrade...
111s Calculating upgrade...
112s The following packages will be upgraded:
112s   base-files cloud-init cloud-init-base gcc-14-base motd-news-config
112s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
112s Need to get 752 kB of archives.
112s After this operation, 19.5 kB of additional disk space will be used.
112s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 motd-news-config all 13.6ubuntu1 [5168 B]
112s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 base-files arm64 13.6ubuntu1 [75.6 kB]
112s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-base arm64 14.2.0-17ubuntu3 [53.6 kB]
112s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cloud-init-base all 25.1-0ubuntu1 [616 kB]
113s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cloud-init all 25.1-0ubuntu1 [2088 B]
113s Preconfiguring packages ...
114s Fetched 752 kB in 1s (784 kB/s)
114s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116668 files and directories currently installed.)
114s Preparing to unpack .../motd-news-config_13.6ubuntu1_all.deb ...
114s Unpacking motd-news-config (13.6ubuntu1) over (13.5ubuntu3) ...
114s Preparing to unpack .../base-files_13.6ubuntu1_arm64.deb ...
114s Unpacking base-files (13.6ubuntu1) over (13.5ubuntu3) ...
114s Setting up base-files (13.6ubuntu1) ...
114s Updating /root/.profile to current default.
115s motd-news.service is a disabled or a static unit not running, not starting it.
115s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116668 files and directories currently installed.)
115s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu3_arm64.deb ...
115s Unpacking gcc-14-base:arm64 (14.2.0-17ubuntu3) over (14.2.0-17ubuntu1) ...
115s Preparing to unpack .../cloud-init-base_25.1-0ubuntu1_all.deb ...
115s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
115s   for fn in glob1(directory, "%s.*" % fname):
115s Unpacking cloud-init-base (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ...
116s Preparing to unpack .../cloud-init_25.1-0ubuntu1_all.deb ...
116s Unpacking cloud-init (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ...
116s Setting up motd-news-config (13.6ubuntu1) ...
116s Setting up gcc-14-base:arm64 (14.2.0-17ubuntu3) ...
116s Setting up cloud-init-base (25.1-0ubuntu1) ...
117s Setting up cloud-init (25.1-0ubuntu1) ...
117s Processing triggers for man-db (2.13.0-1) ...
118s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-2ubuntu5) ...
118s Processing triggers for install-info (7.1.1-1) ...
118s Processing triggers for rsyslog (8.2412.0-2ubuntu1) ...
119s Processing triggers for initramfs-tools (0.145ubuntu2) ...
119s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic
119s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
135s System running in EFI mode, skipping.
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
135s Solving dependencies...
136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
136s autopkgtest [13:43:04]: upgrading testbed (apt dist-upgrade and autopurge)
136s Reading package lists...
136s Building dependency tree...
136s Reading state information...
137s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
137s Starting 2 pkgProblemResolver with broken count: 0
137s Done
138s Entering ResolveByKeep
138s 
138s Calculating upgrade...
139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
140s Starting pkgProblemResolver with broken count: 0
140s Starting 2 pkgProblemResolver with broken count: 0
140s Done
140s Solving dependencies...
140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
141s autopkgtest [13:43:09]: rebooting testbed after setup commands that affected boot
164s autopkgtest [13:43:32]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 15:49:33 UTC 2025
166s autopkgtest [13:43:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-polycub
168s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-polycub 0.9.1-1 (dsc) [2242 B]
168s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-polycub 0.9.1-1 (tar) [122 kB]
168s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-polycub 0.9.1-1 (diff) [3540 B]
169s gpgv: Signature made Mon Jul  1 23:48:38 2024 UTC
169s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
169s gpgv:                issuer "plessy@debian.org"
169s gpgv: Can't check signature: No public key
169s dpkg-source: warning: cannot verify inline signature for ./r-cran-polycub_0.9.1-1.dsc: no acceptable signature found
169s autopkgtest [13:43:37]: testing package r-cran-polycub version 0.9.1-1
169s autopkgtest [13:43:37]: build not needed
171s autopkgtest [13:43:39]: test run-unit-test: preparing testbed
171s Reading package lists...
171s Building dependency tree...
171s Reading state information...
171s Starting pkgProblemResolver with broken count: 0
171s Starting 2 pkgProblemResolver with broken count: 0
171s Done
172s The following NEW packages will be installed:
172s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
172s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
172s   fonts-glyphicons-halflings fonts-mathjax g++ g++-14 g++-14-aarch64-linux-gnu
172s   g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
172s   gcc-aarch64-linux-gnu gdal-data gdal-plugins libabsl20230802 libaec0 libaom3
172s   libarmadillo14 libarpack2t64 libasan8 libavif16 libblas3 libblosc1 libcairo2
172s   libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0
172s   libfontconfig1 libfreexl1 libfyba0t64 libgav1-1 libgcc-14-dev libgdal36
172s   libgeos-c1t64 libgeos3.13.0 libgeotiff5 libgfortran5 libgif7 libgomp1
172s   libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-310
172s   libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 libheif1
172s   libhwasan0 libice6 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
172s   libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables
172s   libjs-mathjax libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3
172s   liblcms2-2 liblerc4 liblsan0 libltdl7 libminizip1t64 libmpc3
172s   libmysqlclient24 libnetcdf22 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7
172s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
172s   libpaper2 libpixman-1-0 libpoppler145 libpq5 libproj25 libqhull-r8.0
172s   librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64
172s   libstdc++-14-dev libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0
172s   libtiff6 libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data
172s   liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2
172s   libxrender1 libxss1 libxt6t64 libyuv0 littler mysql-common
172s   node-normalize.css proj-data r-base-core r-cran-class r-cran-classint
172s   r-cran-commonmark r-cran-cubature r-cran-dbi r-cran-deldir r-cran-e1071
172s   r-cran-evaluate r-cran-highr r-cran-kernsmooth r-cran-knitr r-cran-lattice
172s   r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix
172s   r-cran-mvtnorm r-cran-pkgkitten r-cran-polyclip r-cran-polycub r-cran-proxy
172s   r-cran-rcpp r-cran-s2 r-cran-sf r-cran-sp r-cran-spatstat.data
172s   r-cran-spatstat.geom r-cran-spatstat.utils r-cran-statmod r-cran-units
172s   r-cran-wk r-cran-xfun r-cran-yaml unixodbc-common unzip x11-common xdg-utils
172s   zip
172s 0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded.
172s Need to get 177 MB of archives.
172s After this operation, 522 MB of additional disk space will be used.
172s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
173s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
173s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
176s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
176s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
176s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
176s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250213-1ubuntu1 [44.2 kB]
176s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB]
176s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250213-1ubuntu1 [28.0 kB]
176s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250213-1ubuntu1 [2928 kB]
176s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250213-1ubuntu1 [1319 kB]
176s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250213-1ubuntu1 [2695 kB]
176s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250213-1ubuntu1 [1178 kB]
177s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250213-1ubuntu1 [1642 kB]
177s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
177s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
178s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
178s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
178s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
178s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
178s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
178s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
178s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
178s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
178s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 build-essential arm64 12.12 [4610 B]
178s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
178s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
178s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
178s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
178s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
178s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
178s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
178s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-data all 3.10.2+dfsg-1build1 [269 kB]
178s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-plugins arm64 3.10.2+dfsg-1build1 [25.6 kB]
178s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libabsl20230802 arm64 20230802.1-4ubuntu2 [487 kB]
178s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
178s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.12.0-1 [1828 kB]
178s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
178s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB]
179s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
179s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-4 [94.4 kB]
179s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarmadillo14 arm64 1:14.2.3+dfsg-1 [105 kB]
179s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdav1d7 arm64 1.5.1-1 [304 kB]
179s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgav1-1 arm64 0.19.0-3 [572 kB]
179s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 librav1e0.7 arm64 0.7.1-9 [763 kB]
179s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1832 kB]
179s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
179s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
179s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libyuv0 arm64 0.0.1904.20250204-1 [159 kB]
179s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libavif16 arm64 1.1.1-1ubuntu1 [94.6 kB]
179s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB]
179s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB]
179s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
179s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
179s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
179s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
179s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
179s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcfitsio10t64 arm64 4.5.0-5 [519 kB]
179s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
179s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB]
179s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
179s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB]
179s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [23.1 kB]
179s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB]
179s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos3.13.0 arm64 3.13.0-1 [918 kB]
180s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos-c1t64 arm64 3.13.0-1 [92.6 kB]
180s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.5.1-1 [7924 kB]
180s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
180s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
180s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
180s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
180s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
180s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB]
180s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeotiff5 arm64 1.7.4-1 [58.9 kB]
180s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB]
180s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
180s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB]
180s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
180s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.19.5-1build1 [11.4 kB]
180s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.19.5-1build1 [8902 B]
180s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.19.5-1build1 [369 kB]
180s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB]
180s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB]
180s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB]
180s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB]
180s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 mysql-common all 5.8+1.1.1 [6800 B]
180s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libmysqlclient24 arm64 8.4.4-0ubuntu1 [1243 kB]
180s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
180s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB]
180s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-3build1 [43.0 kB]
180s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbc2 arm64 2.3.12-2ubuntu1 [147 kB]
180s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B]
180s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbcinst2 arm64 2.3.12-2ubuntu1 [30.3 kB]
180s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 libogdi4.1 arm64 4.1.1+ds-5 [217 kB]
180s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu3 [182 kB]
180s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libgpgmepp6t64 arm64 1.24.2-1ubuntu1 [119 kB]
181s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
181s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpoppler145 arm64 25.01.0-4 [1139 kB]
181s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.3-3 [142 kB]
181s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
181s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB]
181s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB]
181s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build1 [874 kB]
181s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgdal36 arm64 3.10.2+dfsg-1build1 [8894 kB]
182s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
182s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
182s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
182s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
182s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
182s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
182s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
182s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
182s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
182s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
182s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
182s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
182s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
182s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
182s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
182s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
182s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
182s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
182s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
182s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
182s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB]
182s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB]
182s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
182s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
182s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
182s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
182s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
184s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
184s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
184s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
184s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
184s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB]
184s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB]
184s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-e1071 arm64 1.7-16-1 [563 kB]
184s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-26-1 [93.3 kB]
184s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB]
184s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB]
184s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
184s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
184s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cubature arm64 2.1.1-1 [1724 kB]
184s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB]
184s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB]
184s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
184s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.50+dfsg-1 [567 kB]
184s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
184s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
184s Get:151 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
185s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
185s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
185s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
185s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-markdown all 1.13-1 [162 kB]
185s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-2-1 [4153 kB]
185s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB]
185s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-polyclip arm64 1.10-7-1 [113 kB]
185s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.1-4+dfsg-1 [1472 kB]
186s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-polycub arm64 0.9.1-1 [235 kB]
186s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB]
186s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-s2 arm64 1.1.7-1 [1987 kB]
186s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB]
186s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sf arm64 1.0-19+dfsg-1 [3247 kB]
186s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.utils arm64 3.1-2-1 [381 kB]
186s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.data all 3.1-4-1 [4047 kB]
187s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spatstat.geom arm64 3.2-9-2 [3939 kB]
187s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
188s Preconfiguring packages ...
188s Fetched 177 MB in 15s (12.0 MB/s)
188s Selecting previously unselected package libisl23:arm64.
188s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116669 files and directories currently installed.)
188s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
188s Unpacking libisl23:arm64 (0.27-1) ...
188s Selecting previously unselected package libmpc3:arm64.
188s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
188s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
188s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
188s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
188s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
188s Selecting previously unselected package cpp-14.
188s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
188s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
188s Selecting previously unselected package cpp-aarch64-linux-gnu.
188s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
188s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
189s Selecting previously unselected package cpp.
189s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
189s Unpacking cpp (4:14.2.0-1ubuntu1) ...
189s Selecting previously unselected package libcc1-0:arm64.
189s Preparing to unpack .../006-libcc1-0_15-20250213-1ubuntu1_arm64.deb ...
189s Unpacking libcc1-0:arm64 (15-20250213-1ubuntu1) ...
189s Selecting previously unselected package libgomp1:arm64.
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189s Selecting previously unselected package libitm1:arm64.
189s Preparing to unpack .../008-libitm1_15-20250213-1ubuntu1_arm64.deb ...
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189s Selecting previously unselected package libasan8:arm64.
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189s Preparing to unpack .../010-liblsan0_15-20250213-1ubuntu1_arm64.deb ...
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189s Selecting previously unselected package libtsan2:arm64.
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189s Selecting previously unselected package libubsan1:arm64.
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189s Selecting previously unselected package libhwasan0:arm64.
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189s Selecting previously unselected package libgcc-14-dev:arm64.
189s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
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189s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
189s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
189s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
189s Selecting previously unselected package gcc-14.
190s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
190s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
190s Selecting previously unselected package gcc-aarch64-linux-gnu.
190s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
190s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
190s Selecting previously unselected package gcc.
190s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
190s Unpacking gcc (4:14.2.0-1ubuntu1) ...
190s Selecting previously unselected package libstdc++-14-dev:arm64.
190s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
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190s Selecting previously unselected package g++-14-aarch64-linux-gnu.
190s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
190s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
190s Selecting previously unselected package g++-14.
190s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
190s Unpacking g++-14 (14.2.0-17ubuntu3) ...
190s Selecting previously unselected package g++-aarch64-linux-gnu.
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190s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
190s Selecting previously unselected package g++.
190s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
190s Unpacking g++ (4:14.2.0-1ubuntu1) ...
190s Selecting previously unselected package build-essential.
190s Preparing to unpack .../024-build-essential_12.12_arm64.deb ...
190s Unpacking build-essential (12.12) ...
190s Selecting previously unselected package fonts-dejavu-mono.
190s Preparing to unpack .../025-fonts-dejavu-mono_2.37-8_all.deb ...
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190s Selecting previously unselected package fonts-dejavu-core.
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190s Unpacking fonts-dejavu-core (2.37-8) ...
190s Selecting previously unselected package fontconfig-config.
190s Preparing to unpack .../027-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
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191s Selecting previously unselected package libfontconfig1:arm64.
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191s Selecting previously unselected package fonts-glyphicons-halflings.
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191s Selecting previously unselected package fonts-mathjax.
191s Preparing to unpack .../031-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
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191s Selecting previously unselected package gdal-data.
191s Preparing to unpack .../032-gdal-data_3.10.2+dfsg-1build1_all.deb ...
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191s Selecting previously unselected package gdal-plugins:arm64.
191s Preparing to unpack .../033-gdal-plugins_3.10.2+dfsg-1build1_arm64.deb ...
191s Unpacking gdal-plugins:arm64 (3.10.2+dfsg-1build1) ...
191s Selecting previously unselected package libabsl20230802:arm64.
191s Preparing to unpack .../034-libabsl20230802_20230802.1-4ubuntu2_arm64.deb ...
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191s Selecting previously unselected package libaec0:arm64.
191s Preparing to unpack .../035-libaec0_1.1.3-1_arm64.deb ...
191s Unpacking libaec0:arm64 (1.1.3-1) ...
191s Selecting previously unselected package libaom3:arm64.
191s Preparing to unpack .../036-libaom3_3.12.0-1_arm64.deb ...
191s Unpacking libaom3:arm64 (3.12.0-1) ...
191s Selecting previously unselected package libblas3:arm64.
191s Preparing to unpack .../037-libblas3_3.12.1-2_arm64.deb ...
191s Unpacking libblas3:arm64 (3.12.1-2) ...
191s Selecting previously unselected package libgfortran5:arm64.
191s Preparing to unpack .../038-libgfortran5_15-20250213-1ubuntu1_arm64.deb ...
191s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ...
191s Selecting previously unselected package liblapack3:arm64.
191s Preparing to unpack .../039-liblapack3_3.12.1-2_arm64.deb ...
191s Unpacking liblapack3:arm64 (3.12.1-2) ...
191s Selecting previously unselected package libarpack2t64:arm64.
191s Preparing to unpack .../040-libarpack2t64_3.9.1-4_arm64.deb ...
191s Unpacking libarpack2t64:arm64 (3.9.1-4) ...
191s Selecting previously unselected package libarmadillo14.
191s Preparing to unpack .../041-libarmadillo14_1%3a14.2.3+dfsg-1_arm64.deb ...
191s Unpacking libarmadillo14 (1:14.2.3+dfsg-1) ...
191s Selecting previously unselected package libdav1d7:arm64.
191s Preparing to unpack .../042-libdav1d7_1.5.1-1_arm64.deb ...
191s Unpacking libdav1d7:arm64 (1.5.1-1) ...
191s Selecting previously unselected package libgav1-1:arm64.
191s Preparing to unpack .../043-libgav1-1_0.19.0-3_arm64.deb ...
191s Unpacking libgav1-1:arm64 (0.19.0-3) ...
192s Selecting previously unselected package librav1e0.7:arm64.
192s Preparing to unpack .../044-librav1e0.7_0.7.1-9_arm64.deb ...
192s Unpacking librav1e0.7:arm64 (0.7.1-9) ...
192s Selecting previously unselected package libsvtav1enc2:arm64.
192s Preparing to unpack .../045-libsvtav1enc2_2.3.0+dfsg-1_arm64.deb ...
192s Unpacking libsvtav1enc2:arm64 (2.3.0+dfsg-1) ...
192s Selecting previously unselected package libjpeg-turbo8:arm64.
192s Preparing to unpack .../046-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
192s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
192s Selecting previously unselected package libjpeg8:arm64.
192s Preparing to unpack .../047-libjpeg8_8c-2ubuntu11_arm64.deb ...
192s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
192s Selecting previously unselected package libyuv0:arm64.
192s Preparing to unpack .../048-libyuv0_0.0.1904.20250204-1_arm64.deb ...
192s Unpacking libyuv0:arm64 (0.0.1904.20250204-1) ...
192s Selecting previously unselected package libavif16:arm64.
192s Preparing to unpack .../049-libavif16_1.1.1-1ubuntu1_arm64.deb ...
192s Unpacking libavif16:arm64 (1.1.1-1ubuntu1) ...
192s Selecting previously unselected package libsnappy1v5:arm64.
192s Preparing to unpack .../050-libsnappy1v5_1.2.1-1_arm64.deb ...
192s Unpacking libsnappy1v5:arm64 (1.2.1-1) ...
192s Selecting previously unselected package libblosc1:arm64.
192s Preparing to unpack .../051-libblosc1_1.21.5+ds-1build1_arm64.deb ...
192s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ...
192s Selecting previously unselected package libpixman-1-0:arm64.
192s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_arm64.deb ...
192s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
192s Selecting previously unselected package libxcb-render0:arm64.
192s Preparing to unpack .../053-libxcb-render0_1.17.0-2_arm64.deb ...
192s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
192s Selecting previously unselected package libxcb-shm0:arm64.
192s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_arm64.deb ...
192s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
192s Selecting previously unselected package libxrender1:arm64.
192s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
192s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
192s Selecting previously unselected package libcairo2:arm64.
192s Preparing to unpack .../056-libcairo2_1.18.2-2_arm64.deb ...
192s Unpacking libcairo2:arm64 (1.18.2-2) ...
192s Selecting previously unselected package libcfitsio10t64:arm64.
192s Preparing to unpack .../057-libcfitsio10t64_4.5.0-5_arm64.deb ...
192s Unpacking libcfitsio10t64:arm64 (4.5.0-5) ...
192s Selecting previously unselected package libdatrie1:arm64.
192s Preparing to unpack .../058-libdatrie1_0.2.13-3build1_arm64.deb ...
192s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
192s Selecting previously unselected package libde265-0:arm64.
192s Preparing to unpack .../059-libde265-0_1.0.15-1build4_arm64.deb ...
192s Unpacking libde265-0:arm64 (1.0.15-1build4) ...
192s Selecting previously unselected package libdeflate0:arm64.
192s Preparing to unpack .../060-libdeflate0_1.23-1_arm64.deb ...
192s Unpacking libdeflate0:arm64 (1.23-1) ...
192s Selecting previously unselected package libfyba0t64:arm64.
192s Preparing to unpack .../061-libfyba0t64_4.1.1-11build1_arm64.deb ...
192s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ...
192s Selecting previously unselected package libminizip1t64:arm64.
192s Preparing to unpack .../062-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
192s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
192s Selecting previously unselected package libfreexl1:arm64.
192s Preparing to unpack .../063-libfreexl1_2.0.0-1build2_arm64.deb ...
192s Unpacking libfreexl1:arm64 (2.0.0-1build2) ...
192s Selecting previously unselected package libgeos3.13.0:arm64.
192s Preparing to unpack .../064-libgeos3.13.0_3.13.0-1_arm64.deb ...
192s Unpacking libgeos3.13.0:arm64 (3.13.0-1) ...
192s Selecting previously unselected package libgeos-c1t64:arm64.
192s Preparing to unpack .../065-libgeos-c1t64_3.13.0-1_arm64.deb ...
192s Unpacking libgeos-c1t64:arm64 (3.13.0-1) ...
193s Selecting previously unselected package proj-data.
193s Preparing to unpack .../066-proj-data_9.5.1-1_all.deb ...
193s Unpacking proj-data (9.5.1-1) ...
193s Selecting previously unselected package libjbig0:arm64.
193s Preparing to unpack .../067-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
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193s Selecting previously unselected package liblerc4:arm64.
193s Preparing to unpack .../068-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
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193s Selecting previously unselected package libsharpyuv0:arm64.
193s Preparing to unpack .../069-libsharpyuv0_1.5.0-0.1_arm64.deb ...
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193s Selecting previously unselected package libwebp7:arm64.
193s Preparing to unpack .../070-libwebp7_1.5.0-0.1_arm64.deb ...
193s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
193s Selecting previously unselected package libtiff6:arm64.
193s Preparing to unpack .../071-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
193s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
193s Selecting previously unselected package libproj25:arm64.
193s Preparing to unpack .../072-libproj25_9.5.1-1_arm64.deb ...
193s Unpacking libproj25:arm64 (9.5.1-1) ...
193s Selecting previously unselected package libgeotiff5:arm64.
193s Preparing to unpack .../073-libgeotiff5_1.7.4-1_arm64.deb ...
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193s Selecting previously unselected package libgif7:arm64.
193s Preparing to unpack .../074-libgif7_5.2.2-1ubuntu1_arm64.deb ...
193s Unpacking libgif7:arm64 (5.2.2-1ubuntu1) ...
193s Selecting previously unselected package libsz2:arm64.
193s Preparing to unpack .../075-libsz2_1.1.3-1_arm64.deb ...
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193s Selecting previously unselected package libhdf4-0-alt:arm64.
193s Preparing to unpack .../076-libhdf4-0-alt_4.3.0-1_arm64.deb ...
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193s Selecting previously unselected package libhdf5-310:arm64.
193s Preparing to unpack .../077-libhdf5-310_1.14.5+repack-3_arm64.deb ...
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193s Selecting previously unselected package libheif-plugin-aomdec:arm64.
193s Preparing to unpack .../078-libheif-plugin-aomdec_1.19.5-1build1_arm64.deb ...
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193s Preparing to unpack .../080-libheif1_1.19.5-1build1_arm64.deb ...
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193s Selecting previously unselected package liburiparser1:arm64.
193s Preparing to unpack .../081-liburiparser1_0.9.8+dfsg-2_arm64.deb ...
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193s Selecting previously unselected package libkmlbase1t64:arm64.
193s Preparing to unpack .../082-libkmlbase1t64_1.3.0-12build1_arm64.deb ...
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193s Selecting previously unselected package libkmldom1t64:arm64.
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193s Selecting previously unselected package libkmlengine1t64:arm64.
193s Preparing to unpack .../084-libkmlengine1t64_1.3.0-12build1_arm64.deb ...
193s Unpacking libkmlengine1t64:arm64 (1.3.0-12build1) ...
194s Selecting previously unselected package mysql-common.
194s Preparing to unpack .../085-mysql-common_5.8+1.1.1_all.deb ...
194s Unpacking mysql-common (5.8+1.1.1) ...
194s Selecting previously unselected package libmysqlclient24:arm64.
194s Preparing to unpack .../086-libmysqlclient24_8.4.4-0ubuntu1_arm64.deb ...
194s Unpacking libmysqlclient24:arm64 (8.4.4-0ubuntu1) ...
194s Selecting previously unselected package libhdf5-hl-310:arm64.
194s Preparing to unpack .../087-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ...
194s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
194s Selecting previously unselected package libnetcdf22:arm64.
194s Preparing to unpack .../088-libnetcdf22_1%3a4.9.3-1_arm64.deb ...
194s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ...
194s Selecting previously unselected package libltdl7:arm64.
194s Preparing to unpack .../089-libltdl7_2.5.4-3build1_arm64.deb ...
194s Unpacking libltdl7:arm64 (2.5.4-3build1) ...
194s Selecting previously unselected package libodbc2:arm64.
194s Preparing to unpack .../090-libodbc2_2.3.12-2ubuntu1_arm64.deb ...
194s Unpacking libodbc2:arm64 (2.3.12-2ubuntu1) ...
194s Selecting previously unselected package unixodbc-common.
194s Preparing to unpack .../091-unixodbc-common_2.3.12-2ubuntu1_all.deb ...
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194s Selecting previously unselected package libodbcinst2:arm64.
194s Preparing to unpack .../092-libodbcinst2_2.3.12-2ubuntu1_arm64.deb ...
194s Unpacking libodbcinst2:arm64 (2.3.12-2ubuntu1) ...
194s Selecting previously unselected package libogdi4.1:arm64.
194s Preparing to unpack .../093-libogdi4.1_4.1.1+ds-5_arm64.deb ...
194s Unpacking libogdi4.1:arm64 (4.1.1+ds-5) ...
194s Selecting previously unselected package libopenjp2-7:arm64.
194s Preparing to unpack .../094-libopenjp2-7_2.5.0-2ubuntu3_arm64.deb ...
194s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu3) ...
194s Selecting previously unselected package libgpgmepp6t64:arm64.
194s Preparing to unpack .../095-libgpgmepp6t64_1.24.2-1ubuntu1_arm64.deb ...
194s Unpacking libgpgmepp6t64:arm64 (1.24.2-1ubuntu1) ...
194s Selecting previously unselected package liblcms2-2:arm64.
194s Preparing to unpack .../096-liblcms2-2_2.16-2_arm64.deb ...
194s Unpacking liblcms2-2:arm64 (2.16-2) ...
194s Selecting previously unselected package libpoppler145:arm64.
194s Preparing to unpack .../097-libpoppler145_25.01.0-4_arm64.deb ...
194s Unpacking libpoppler145:arm64 (25.01.0-4) ...
194s Selecting previously unselected package libpq5:arm64.
194s Preparing to unpack .../098-libpq5_17.3-3_arm64.deb ...
194s Unpacking libpq5:arm64 (17.3-3) ...
194s Selecting previously unselected package libqhull-r8.0:arm64.
194s Preparing to unpack .../099-libqhull-r8.0_2020.2-6build1_arm64.deb ...
194s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
194s Selecting previously unselected package librttopo1:arm64.
194s Preparing to unpack .../100-librttopo1_1.1.0-3build2_arm64.deb ...
194s Unpacking librttopo1:arm64 (1.1.0-3build2) ...
194s Selecting previously unselected package libspatialite8t64:arm64.
194s Preparing to unpack .../101-libspatialite8t64_5.1.0-3build1_arm64.deb ...
194s Unpacking libspatialite8t64:arm64 (5.1.0-3build1) ...
194s Selecting previously unselected package libxerces-c3.2t64:arm64.
194s Preparing to unpack .../102-libxerces-c3.2t64_3.2.4+debian-1.3build1_arm64.deb ...
194s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build1) ...
194s Selecting previously unselected package libgdal36:arm64.
194s Preparing to unpack .../103-libgdal36_3.10.2+dfsg-1build1_arm64.deb ...
194s Unpacking libgdal36:arm64 (3.10.2+dfsg-1build1) ...
195s Selecting previously unselected package libgraphite2-3:arm64.
195s Preparing to unpack .../104-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
195s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
195s Selecting previously unselected package libharfbuzz0b:arm64.
195s Preparing to unpack .../105-libharfbuzz0b_10.2.0-1_arm64.deb ...
195s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
195s Selecting previously unselected package x11-common.
195s Preparing to unpack .../106-x11-common_1%3a7.7+23ubuntu3_all.deb ...
195s Unpacking x11-common (1:7.7+23ubuntu3) ...
195s Selecting previously unselected package libice6:arm64.
195s Preparing to unpack .../107-libice6_2%3a1.1.1-1_arm64.deb ...
195s Unpacking libice6:arm64 (2:1.1.1-1) ...
195s Selecting previously unselected package libjs-bootstrap.
195s Preparing to unpack .../108-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
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205s autopkgtest [13:44:13]: test run-unit-test: [-----------------------
205s BEGIN TEST test-NWGL.R
205s 
205s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
205s Copyright (C) 2024 The R Foundation for Statistical Computing
205s Platform: aarch64-unknown-linux-gnu
205s 
205s R is free software and comes with ABSOLUTELY NO WARRANTY.
205s You are welcome to redistribute it under certain conditions.
205s Type 'license()' or 'licence()' for distribution details.
205s 
205s R is a collaborative project with many contributors.
205s Type 'contributors()' for more information and
205s 'citation()' on how to cite R or R packages in publications.
205s 
205s Type 'demo()' for some demos, 'help()' for on-line help, or
205s 'help.start()' for an HTML browser interface to help.
205s Type 'q()' to quit R.
205s 
205s > if (!requireNamespace("statmod")) q("no")
205s Loading required namespace: statmod
205s > library("polyCub")
205s > 
205s > ## statmod::gauss.quad() gives cached Gauss-Legendre nodes/weights
205s > new.NWGL <- lapply(
205s +     X = seq_len(61L),
205s +     FUN = function (n)
205s +     unname(statmod::gauss.quad(n = n, kind = "legendre"))
205s + )
205s > stopifnot(all.equal(new.NWGL, polyCub:::.NWGL, check.attributes = FALSE))
205s > 
205s > ## polyCub.SV() can fetch nodes and weights from 'statmod'
205s > diamond <- list(list(x = c(1,2,1,0), y = c(1,2,3,2)))
205s > nw <- polyCub.SV(diamond, f = NULL, nGQ = 83)  # nGQ > 61
205s > stopifnot(is.list(nw))
205s > 
205s > ## polyCub.SV() can reduce nodes with zero weight
205s > rectangle <- list(list(x = c(-1,1,1,-1), y = c(1,1,2,2)))
205s > ##nw0 <- polyCub.SV(rectangle, f = NULL, nGQ = 3, engine = "C")[[1]]  # 0s
205s > nw <- polyCub.SV(rectangle, f = NULL, nGQ = 3, engine = "C+reduce")[[1]]
205s > stopifnot(nw$weights != 0)
205s > ##f <- function (s) 1  # => calculate area (= 2)
205s > stopifnot(all.equal(sum(nw$weights), 2))
205s > 
205s BEGIN TEST test-polyCub.R
205s 
205s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
205s Copyright (C) 2024 The R Foundation for Statistical Computing
205s Platform: aarch64-unknown-linux-gnu
205s 
205s R is free software and comes with ABSOLUTELY NO WARRANTY.
205s You are welcome to redistribute it under certain conditions.
205s Type 'license()' or 'licence()' for distribution details.
205s 
205s R is a collaborative project with many contributors.
205s Type 'contributors()' for more information and
205s 'citation()' on how to cite R or R packages in publications.
205s 
205s Type 'demo()' for some demos, 'help()' for on-line help, or
205s 'help.start()' for an HTML browser interface to help.
205s Type 'q()' to quit R.
205s 
206s > if (!requireNamespace("spatstat.geom"))
206s +     q("no")
206s Loading required namespace: spatstat.geom
207s > library("polyCub")
207s > 
207s > ## bivariate, isotropic Gaussian density
207s > f <- function (s, mean, sd)
207s +     dnorm(s[,1], mean=mean[1], sd=sd) * dnorm(s[,2], mean=mean[2], sd=sd)
207s > 
207s > ## circular domain represented by a polygon
207s > r <- 5
207s > center <- c(3,2)
207s > npoly <- 128
207s > disc.owin <- spatstat.geom::disc(radius=r, centre=center, npoly=npoly)
207s > 
207s > ## parameters for f
207s > m <- c(1,1)
207s > sd <- 3
207s > 
207s > ## target value of the integral over the _polygonal_ circle
207s > intExact <- 0.65844436  # taken from exact.Gauss cubature (below)
207s > stopIfDiff <- function(int, ...)
207s +     if(!isTRUE(all.equal.numeric(intExact, int, ..., check.attributes = FALSE))) {
207s +         if (is.call(cl <- substitute(int))) cl <- cl[1]
207s +         stop(deparse(cl), " result not equal to reference value")
207s +     }
207s > 
207s > ## reproduce saved reference value
207s > if (identical(Sys.getenv("R_GPCLIBPERMIT"), "true") &&
207s +     local({pkg <- "gpclib"; requireNamespace(pkg)}) && # undeclared ...
207s +     requireNamespace("mvtnorm"))
207s +     stopIfDiff(polyCub.exact.Gauss(disc.owin, mean=m, Sigma=sd^2*diag(2)),
207s +                tolerance = 1e-8)
207s > 
207s > ## exact value of the integral over the _real_ circle
207s > stopIfDiff(circleCub.Gauss(center=center, r=r, mean=m, sd=sd),
207s +            tolerance = 0.001)  # agreement depends on 'npoly'
207s > 
207s > ## polyCub.midpoint
207s > stopIfDiff(polyCub.midpoint(disc.owin, f, mean=m, sd=sd, dimyx=500),
207s +            tolerance = 0.001)
207s > 
207s > ## polyCub.SV
207s > intC <- polyCub.SV(disc.owin, f, mean=m, sd=sd, nGQ=3, engine="C")
207s > intR <- polyCub.SV(disc.owin, f, mean=m, sd=sd, nGQ=3, engine="R")
207s > stopifnot(all.equal(intC, intR))
207s > stopIfDiff(intC, tolerance = 0.0001)
207s > 
207s > ## polyCub.iso (using a numerical approximation of intrfr)
207s > stopIfDiff(polyCub.iso(disc.owin, f, mean=m, sd=sd, center=m))
207s > 
207s BEGIN TEST test-polyiso.R
207s 
207s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
207s Copyright (C) 2024 The R Foundation for Statistical Computing
207s Platform: aarch64-unknown-linux-gnu
207s 
207s R is free software and comes with ABSOLUTELY NO WARRANTY.
207s You are welcome to redistribute it under certain conditions.
207s Type 'license()' or 'licence()' for distribution details.
207s 
207s R is a collaborative project with many contributors.
207s Type 'contributors()' for more information and
207s 'citation()' on how to cite R or R packages in publications.
207s 
207s Type 'demo()' for some demos, 'help()' for on-line help, or
207s 'help.start()' for an HTML browser interface to help.
207s Type 'q()' to quit R.
207s 
207s > library("polyCub")
207s > 
207s > ## function to call an R CMD with environment variables
207s > ## 'env' specified as a named character vector
207s > Rcmd <- function (args, env = character(), ...) {
207s +     stopifnot(is.vector(env, mode = "character"),
207s +               !is.null(names(env)))
207s +     if (.Platform$OS.type == "windows") {
207s +         if (length(env)) {
207s +             ## the 'env' argument of system2() is not supported on Windows
207s +             setenv <- function (envs) {
207s +                 old <- Sys.getenv(names(envs), unset = NA, names = TRUE)
207s +                 set <- !is.na(envs)
207s +                 if (any(set)) do.call(Sys.setenv, as.list(envs[set]))
207s +                 if (any(!set)) Sys.unsetenv(names(envs)[!set])
207s +                 invisible(old)
207s +             }
207s +             oldenv <- setenv(env)
207s +             on.exit(setenv(oldenv))
207s +         }
207s +         system2(command = file.path(R.home("bin"), "Rcmd.exe"),
207s +                 args = args, ...)
207s +     } else {
207s +         system2(command = file.path(R.home("bin"), "R"),
207s +                 args = c("CMD", args),
207s +                 env = paste(names(env), env, sep = "="), ...)
207s +     }
207s + }
207s > 
207s > ## test compilation with #include <polyCubAPI.h> for the polyCub_iso C-routine
207s > message("compiling polyiso_powerlaw.c using R CMD SHLIB")
207s > shlib_error <- Rcmd(
207s +     args = c("SHLIB", "--clean", "polyiso_powerlaw.c"),
207s +     env = c("PKG_CPPFLAGS" = paste0(
207s +                 "-I", system.file("include", package="polyCub")
207s +             ),
207s +             "R_TESTS" = "")
207s + )
207s compiling polyiso_powerlaw.c using R CMD SHLIB
207s using C compiler: ‘gcc (Ubuntu 14.2.0-17ubuntu3) 14.2.0’
207s gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/lib/R/site-library/polyCub/include      -fPIC  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/build/r-base-54GPTd/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fdebug-prefix-map=/build/r-base-54GPTd/r-base-4.4.2=/usr/src/r-base-4.4.2-1build1 -Wdate-time -D_FORTIFY_SOURCE=3  -c polyiso_powerlaw.c -o polyiso_powerlaw.o
208s gcc -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -o polyiso_powerlaw.so polyiso_powerlaw.o -L/usr/lib/R/lib -lR
208s > if (shlib_error) {
208s +     warning("failed to build the shared object/DLL for the polyCub_iso example")
208s +     q("no")
208s + }
208s > 
208s > ## load shared object/DLL
208s > myDLL <- paste0("polyiso_powerlaw", .Platform$dynlib.ext)
208s > loadNamespace("polyCub")
208s <environment: namespace:polyCub>
208s > dyn.load(myDLL)
208s > 
208s > ## R function calling C_polyiso_powerlaw
208s > polyiso_powerlaw <- function (xypoly, logpars, center,
208s +                               subdivisions = 100L,
208s +                               rel.tol = .Machine$double.eps^0.25,
208s +                               abs.tol = rel.tol, stop.on.error = TRUE)
208s + {
208s +     .C("C_polyiso_powerlaw",
208s +        as.double(xypoly$x), as.double(xypoly$y), as.integer(length(xypoly$x)),
208s +        as.double(logpars),
208s +        as.double(center[1L]), as.double(center[2L]),
208s +        as.integer(subdivisions), as.double(abs.tol), as.double(rel.tol),
208s +        as.integer(stop.on.error),
208s +        value = double(1L), abserr = double(1L), neval = integer(1L)
208s +        )[c("value", "abserr", "neval")]
208s + }
208s > 
208s > 
208s > ## example polygon and function parameters
208s > diamond <- list(x = c(1,2,1,0), y = c(1,2,3,2))
208s > logpars <- log(c(0.5, 1))
208s > center <- c(0.5,2.5)  # lies on an edge (to cover that case as well)
208s > 
208s > (res <- polyiso_powerlaw(xypoly = diamond,
208s +                          logpars = logpars,
208s +                          center = center))
208s $value
208s [1] 1.623643
208s 
208s $abserr
208s [1] 4.190075e-13
208s 
208s $neval
208s [1] 63
208s 
208s > 
208s > 
208s > ## compare with R implementation
208s > intrfr.powerlaw <- function (R, logpars)
208s + {
208s +     sigma <- exp(logpars[[1L]])
208s +     d <- exp(logpars[[2L]])
208s +     if (d == 1) {
208s +         R - sigma * log(R/sigma + 1)
208s +     } else if (d == 2) {
208s +         log(R/sigma + 1) - R/(R+sigma)
208s +     } else {
208s +         (R*(R+sigma)^(1-d) - ((R+sigma)^(2-d) - sigma^(2-d))/(2-d)) / (1-d)
208s +     }
208s + }
208s > (orig <- polyCub:::polyCub1.iso(poly = diamond,
208s +                                 intrfr = intrfr.powerlaw,
208s +                                 logpars = logpars,
208s +                                 center = center))
208s [1] 1.623643e+00 4.190075e-13
208s > 
208s > stopifnot(all.equal(res$value, orig[1L]))
208s > stopifnot(all.equal(res$abserr, orig[2L]))
208s > 
208s > ## microbenchmark::microbenchmark(
208s > ##     polyCub:::polyCub1.iso(diamond, intrfr.powerlaw, logpars, center=center),
208s > ##     polyiso_powerlaw(diamond, logpars, center=center),
208s > ##     times = 1000)
208s > ## ## 150 mus vs. 20 mus
208s > 
208s > dyn.unload(myDLL)
208s > file.remove(myDLL)
208s [1] TRUE
208s > 
208s BEGIN TEST test-regression.R
208s 
208s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
208s Copyright (C) 2024 The R Foundation for Statistical Computing
208s Platform: aarch64-unknown-linux-gnu
208s 
208s R is free software and comes with ABSOLUTELY NO WARRANTY.
208s You are welcome to redistribute it under certain conditions.
208s Type 'license()' or 'licence()' for distribution details.
208s 
208s R is a collaborative project with many contributors.
208s Type 'contributors()' for more information and
208s 'citation()' on how to cite R or R packages in publications.
208s 
208s Type 'demo()' for some demos, 'help()' for on-line help, or
208s 'help.start()' for an HTML browser interface to help.
208s Type 'q()' to quit R.
208s 
208s > library("polyCub")
208s > 
208s > ### Regression tests
208s > 
208s > hexagon <- list(
208s +     list(x = c(7.33, 7.33, 3, -1.33, -1.33, 3),
208s +          y = c(-0.5, 4.5, 7, 4.5, -0.5, -3))
208s + )
208s > f <- function (s) (rowSums(s^2)+1)^-2
208s > ##plotpolyf(hexagon, f)
208s > 
208s > ## isotropic cubature can handle control list for integrate()
208s > ## previously, passing control arguments did not work
208s > int1 <- polyCub.iso(hexagon, f, center=c(0,0), control=list(rel.tol=1e-3))
208s > int2 <- polyCub.iso(hexagon, f, center=c(0,0), control=list(rel.tol=1e-8))
208s > ## results are almost but not identical
208s > stopifnot(all.equal(int1, int2, tolerance = 1e-3),
208s +           !identical(int1, int2))
208s > 
209s autopkgtest [13:44:17]: test run-unit-test: -----------------------]
209s autopkgtest [13:44:17]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
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435s The following NEW packages will be installed:
435s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
435s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
435s   fonts-glyphicons-halflings fonts-mathjax g++ g++-14 g++-14-aarch64-linux-gnu
435s   g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
435s   gcc-aarch64-linux-gnu gdal-data gdal-plugins gfortran gfortran-14
435s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
435s   libabsl20230802 libaec0 libaom3 libarmadillo14 libarpack2t64 libasan8
435s   libavif16 libblas-dev libblas3 libblosc1 libbz2-dev libcairo2 libcc1-0
435s   libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate-dev libdeflate0
435s   libfontconfig1 libfreexl1 libfyba0t64 libgav1-1 libgcc-14-dev libgdal36
435s   libgeos-c1t64 libgeos3.13.0 libgeotiff5 libgfortran-14-dev libgfortran5
435s   libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0-alt
435s   libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265
435s   libheif1 libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
435s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
435s   libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax
435s   libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3
435s   liblcms2-2 liblerc4 liblsan0 libltdl7 liblzma-dev libminizip1t64 libmpc3
435s   libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 libodbcinst2 libogdi4.1
435s   libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
435s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
435s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler145 libpq5
435s   libproj25 libqhull-r8.0 librav1e0.7 libreadline-dev librttopo1 libsharpyuv0
435s   libsm6 libsnappy1v5 libspatialite8t64 libstdc++-14-dev libsvtav1enc2 libsz2
435s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
435s   libubsan1 libudunits2-0 libudunits2-data liburiparser1 libwebp7
435s   libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1
435s   libxt6t64 libyuv0 littler mysql-common node-normalize.css pkg-r-autopkgtest
435s   pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-class
435s   r-cran-classint r-cran-commonmark r-cran-cubature r-cran-dbi r-cran-e1071
435s   r-cran-evaluate r-cran-highr r-cran-kernsmooth r-cran-knitr r-cran-lattice
435s   r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-mvtnorm
435s   r-cran-pkgkitten r-cran-polycub r-cran-proxy r-cran-rcpp r-cran-s2 r-cran-sf
435s   r-cran-sp r-cran-statmod r-cran-units r-cran-wk r-cran-xfun r-cran-yaml
435s   unixodbc-common unzip x11-common xdg-utils zip zlib1g-dev
435s 0 upgraded, 192 newly installed, 0 to remove and 0 not upgraded.
435s Need to get 197 MB of archives.
435s After this operation, 632 MB of additional disk space will be used.
435s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
435s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
435s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
436s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
436s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
436s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
436s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250213-1ubuntu1 [44.2 kB]
436s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB]
436s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250213-1ubuntu1 [28.0 kB]
436s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250213-1ubuntu1 [2928 kB]
436s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250213-1ubuntu1 [1319 kB]
436s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250213-1ubuntu1 [2695 kB]
436s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250213-1ubuntu1 [1178 kB]
436s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250213-1ubuntu1 [1642 kB]
436s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
436s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
437s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
437s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
437s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
437s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
437s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
437s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
437s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
437s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
437s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 build-essential arm64 12.12 [4610 B]
437s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
437s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
437s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
437s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
437s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
437s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
437s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
437s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
437s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-data all 3.10.2+dfsg-1build1 [269 kB]
437s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-plugins arm64 3.10.2+dfsg-1build1 [25.6 kB]
437s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB]
437s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
437s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
438s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
438s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
438s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
438s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
438s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libabsl20230802 arm64 20230802.1-4ubuntu2 [487 kB]
438s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
438s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.12.0-1 [1828 kB]
438s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
438s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
438s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-4 [94.4 kB]
438s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarmadillo14 arm64 1:14.2.3+dfsg-1 [105 kB]
438s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdav1d7 arm64 1.5.1-1 [304 kB]
438s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgav1-1 arm64 0.19.0-3 [572 kB]
438s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 librav1e0.7 arm64 0.7.1-9 [763 kB]
438s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1832 kB]
438s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
438s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
438s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libyuv0 arm64 0.0.1904.20250204-1 [159 kB]
438s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libavif16 arm64 1.1.1-1ubuntu1 [94.6 kB]
438s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
438s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB]
438s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB]
438s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
438s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
438s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
438s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
438s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
438s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
438s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcfitsio10t64 arm64 4.5.0-5 [519 kB]
438s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
438s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB]
438s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
438s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
438s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB]
438s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [23.1 kB]
438s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB]
438s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos3.13.0 arm64 3.13.0-1 [918 kB]
438s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos-c1t64 arm64 3.13.0-1 [92.6 kB]
438s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.5.1-1 [7924 kB]
438s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
438s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
438s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
438s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
438s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
438s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB]
438s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeotiff5 arm64 1.7.4-1 [58.9 kB]
438s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB]
438s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
438s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB]
438s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
438s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.19.5-1build1 [11.4 kB]
438s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.19.5-1build1 [8902 B]
438s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.19.5-1build1 [369 kB]
438s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB]
438s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB]
438s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB]
438s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB]
438s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 mysql-common all 5.8+1.1.1 [6800 B]
438s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libmysqlclient24 arm64 8.4.4-0ubuntu1 [1243 kB]
438s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
438s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB]
438s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-3build1 [43.0 kB]
438s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbc2 arm64 2.3.12-2ubuntu1 [147 kB]
439s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B]
439s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbcinst2 arm64 2.3.12-2ubuntu1 [30.3 kB]
439s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libogdi4.1 arm64 4.1.1+ds-5 [217 kB]
439s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu3 [182 kB]
439s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libgpgmepp6t64 arm64 1.24.2-1ubuntu1 [119 kB]
439s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
439s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libpoppler145 arm64 25.01.0-4 [1139 kB]
439s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.3-3 [142 kB]
439s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
439s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB]
439s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB]
439s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build1 [874 kB]
439s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgdal36 arm64 3.10.2+dfsg-1build1 [8894 kB]
440s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
440s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
440s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
440s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
440s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
441s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
441s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
441s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
441s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
441s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
441s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
441s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
441s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
441s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250125-2 [388 kB]
441s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
441s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
441s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
441s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
441s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
441s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
441s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
441s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
441s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB]
441s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B]
441s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB]
441s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
441s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
441s Get:142 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.46-4 [275 kB]
441s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
441s Get:144 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
441s Get:145 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
441s Get:146 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
441s Get:147 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
441s Get:148 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
441s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB]
441s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB]
441s Get:151 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
441s Get:152 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
441s Get:153 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
441s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
441s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
442s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
442s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
442s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
442s Get:159 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.3-1 [180 kB]
442s Get:160 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
442s Get:161 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
442s Get:162 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
442s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.2-1build1 [4342 B]
442s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
442s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
442s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB]
442s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB]
442s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-e1071 arm64 1.7-16-1 [563 kB]
442s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-26-1 [93.3 kB]
443s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB]
443s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB]
443s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
443s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
443s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cubature arm64 2.1.1-1 [1724 kB]
443s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB]
443s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
443s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.50+dfsg-1 [567 kB]
443s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
443s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
443s Get:180 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
443s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
443s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
443s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
443s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-markdown all 1.13-1 [162 kB]
443s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB]
443s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.1-4+dfsg-1 [1472 kB]
443s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-polycub arm64 0.9.1-1 [235 kB]
443s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB]
443s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-s2 arm64 1.1.7-1 [1987 kB]
443s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB]
443s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sf arm64 1.0-19+dfsg-1 [3247 kB]
443s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
444s Preconfiguring packages ...
444s Fetched 197 MB in 9s (22.4 MB/s)
444s Selecting previously unselected package libisl23:arm64.
445s (Reading database ... 
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445s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
445s Unpacking libisl23:arm64 (0.27-1) ...
445s Selecting previously unselected package libmpc3:arm64.
445s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
445s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
445s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
445s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
445s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
445s Selecting previously unselected package cpp-14.
445s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
445s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
445s Selecting previously unselected package cpp-aarch64-linux-gnu.
445s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
445s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
445s Selecting previously unselected package cpp.
445s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
445s Unpacking cpp (4:14.2.0-1ubuntu1) ...
445s Selecting previously unselected package libcc1-0:arm64.
445s Preparing to unpack .../006-libcc1-0_15-20250213-1ubuntu1_arm64.deb ...
445s Unpacking libcc1-0:arm64 (15-20250213-1ubuntu1) ...
445s Selecting previously unselected package libgomp1:arm64.
445s Preparing to unpack .../007-libgomp1_15-20250213-1ubuntu1_arm64.deb ...
445s Unpacking libgomp1:arm64 (15-20250213-1ubuntu1) ...
445s Selecting previously unselected package libitm1:arm64.
445s Preparing to unpack .../008-libitm1_15-20250213-1ubuntu1_arm64.deb ...
445s Unpacking libitm1:arm64 (15-20250213-1ubuntu1) ...
445s Selecting previously unselected package libasan8:arm64.
445s Preparing to unpack .../009-libasan8_15-20250213-1ubuntu1_arm64.deb ...
445s Unpacking libasan8:arm64 (15-20250213-1ubuntu1) ...
445s Selecting previously unselected package liblsan0:arm64.
445s Preparing to unpack .../010-liblsan0_15-20250213-1ubuntu1_arm64.deb ...
445s Unpacking liblsan0:arm64 (15-20250213-1ubuntu1) ...
446s Selecting previously unselected package libtsan2:arm64.
446s Preparing to unpack .../011-libtsan2_15-20250213-1ubuntu1_arm64.deb ...
446s Unpacking libtsan2:arm64 (15-20250213-1ubuntu1) ...
446s Selecting previously unselected package libubsan1:arm64.
446s Preparing to unpack .../012-libubsan1_15-20250213-1ubuntu1_arm64.deb ...
446s Unpacking libubsan1:arm64 (15-20250213-1ubuntu1) ...
446s Selecting previously unselected package libhwasan0:arm64.
446s Preparing to unpack .../013-libhwasan0_15-20250213-1ubuntu1_arm64.deb ...
446s Unpacking libhwasan0:arm64 (15-20250213-1ubuntu1) ...
446s Selecting previously unselected package libgcc-14-dev:arm64.
446s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
446s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
446s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
446s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
446s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
446s Selecting previously unselected package gcc-14.
446s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
446s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
446s Selecting previously unselected package gcc-aarch64-linux-gnu.
446s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
446s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
447s Selecting previously unselected package gcc.
447s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
447s Unpacking gcc (4:14.2.0-1ubuntu1) ...
447s Selecting previously unselected package libstdc++-14-dev:arm64.
447s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
447s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
447s Selecting previously unselected package g++-14-aarch64-linux-gnu.
447s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
447s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
447s Selecting previously unselected package g++-14.
447s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
447s Unpacking g++-14 (14.2.0-17ubuntu3) ...
447s Selecting previously unselected package g++-aarch64-linux-gnu.
447s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
447s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
447s Selecting previously unselected package g++.
447s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
447s Unpacking g++ (4:14.2.0-1ubuntu1) ...
447s Selecting previously unselected package build-essential.
447s Preparing to unpack .../024-build-essential_12.12_arm64.deb ...
447s Unpacking build-essential (12.12) ...
447s Selecting previously unselected package dctrl-tools.
447s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ...
447s Unpacking dctrl-tools (2.24-3build3) ...
447s Selecting previously unselected package fonts-dejavu-mono.
447s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ...
447s Unpacking fonts-dejavu-mono (2.37-8) ...
447s Selecting previously unselected package fonts-dejavu-core.
448s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ...
448s Unpacking fonts-dejavu-core (2.37-8) ...
448s Selecting previously unselected package fontconfig-config.
448s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
448s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
448s Selecting previously unselected package libfontconfig1:arm64.
448s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
448s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
448s Selecting previously unselected package fontconfig.
448s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
448s Unpacking fontconfig (2.15.0-2ubuntu1) ...
448s Selecting previously unselected package fonts-glyphicons-halflings.
448s Preparing to unpack .../031-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
448s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
448s Selecting previously unselected package fonts-mathjax.
448s Preparing to unpack .../032-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
448s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
448s Selecting previously unselected package gdal-data.
448s Preparing to unpack .../033-gdal-data_3.10.2+dfsg-1build1_all.deb ...
448s Unpacking gdal-data (3.10.2+dfsg-1build1) ...
448s Selecting previously unselected package gdal-plugins:arm64.
448s Preparing to unpack .../034-gdal-plugins_3.10.2+dfsg-1build1_arm64.deb ...
448s Unpacking gdal-plugins:arm64 (3.10.2+dfsg-1build1) ...
448s Selecting previously unselected package libgfortran5:arm64.
448s Preparing to unpack .../035-libgfortran5_15-20250213-1ubuntu1_arm64.deb ...
448s Unpacking libgfortran5:arm64 (15-20250213-1ubuntu1) ...
448s Selecting previously unselected package libgfortran-14-dev:arm64.
448s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
448s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
449s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
449s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
449s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
449s Selecting previously unselected package gfortran-14.
449s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
449s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
449s Selecting previously unselected package gfortran-aarch64-linux-gnu.
449s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
449s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
449s Selecting previously unselected package gfortran.
449s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
449s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
449s Selecting previously unselected package icu-devtools.
449s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ...
449s Unpacking icu-devtools (76.1-1ubuntu2) ...
449s Selecting previously unselected package libabsl20230802:arm64.
449s Preparing to unpack .../042-libabsl20230802_20230802.1-4ubuntu2_arm64.deb ...
449s Unpacking libabsl20230802:arm64 (20230802.1-4ubuntu2) ...
449s Selecting previously unselected package libaec0:arm64.
449s Preparing to unpack .../043-libaec0_1.1.3-1_arm64.deb ...
449s Unpacking libaec0:arm64 (1.1.3-1) ...
449s Selecting previously unselected package libaom3:arm64.
449s Preparing to unpack .../044-libaom3_3.12.0-1_arm64.deb ...
449s Unpacking libaom3:arm64 (3.12.0-1) ...
449s Selecting previously unselected package libblas3:arm64.
449s Preparing to unpack .../045-libblas3_3.12.1-2_arm64.deb ...
449s Unpacking libblas3:arm64 (3.12.1-2) ...
449s Selecting previously unselected package liblapack3:arm64.
449s Preparing to unpack .../046-liblapack3_3.12.1-2_arm64.deb ...
449s Unpacking liblapack3:arm64 (3.12.1-2) ...
449s Selecting previously unselected package libarpack2t64:arm64.
449s Preparing to unpack .../047-libarpack2t64_3.9.1-4_arm64.deb ...
449s Unpacking libarpack2t64:arm64 (3.9.1-4) ...
449s Selecting previously unselected package libarmadillo14.
449s Preparing to unpack .../048-libarmadillo14_1%3a14.2.3+dfsg-1_arm64.deb ...
449s Unpacking libarmadillo14 (1:14.2.3+dfsg-1) ...
449s Selecting previously unselected package libdav1d7:arm64.
450s Preparing to unpack .../049-libdav1d7_1.5.1-1_arm64.deb ...
450s Unpacking libdav1d7:arm64 (1.5.1-1) ...
450s Selecting previously unselected package libgav1-1:arm64.
450s Preparing to unpack .../050-libgav1-1_0.19.0-3_arm64.deb ...
450s Unpacking libgav1-1:arm64 (0.19.0-3) ...
450s Selecting previously unselected package librav1e0.7:arm64.
450s Preparing to unpack .../051-librav1e0.7_0.7.1-9_arm64.deb ...
450s Unpacking librav1e0.7:arm64 (0.7.1-9) ...
450s Selecting previously unselected package libsvtav1enc2:arm64.
450s Preparing to unpack .../052-libsvtav1enc2_2.3.0+dfsg-1_arm64.deb ...
450s Unpacking libsvtav1enc2:arm64 (2.3.0+dfsg-1) ...
450s Selecting previously unselected package libjpeg-turbo8:arm64.
450s Preparing to unpack .../053-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
450s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
450s Selecting previously unselected package libjpeg8:arm64.
450s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_arm64.deb ...
450s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
450s Selecting previously unselected package libyuv0:arm64.
450s Preparing to unpack .../055-libyuv0_0.0.1904.20250204-1_arm64.deb ...
450s Unpacking libyuv0:arm64 (0.0.1904.20250204-1) ...
450s Selecting previously unselected package libavif16:arm64.
450s Preparing to unpack .../056-libavif16_1.1.1-1ubuntu1_arm64.deb ...
450s Unpacking libavif16:arm64 (1.1.1-1ubuntu1) ...
450s Selecting previously unselected package libblas-dev:arm64.
450s Preparing to unpack .../057-libblas-dev_3.12.1-2_arm64.deb ...
450s Unpacking libblas-dev:arm64 (3.12.1-2) ...
450s Selecting previously unselected package libsnappy1v5:arm64.
450s Preparing to unpack .../058-libsnappy1v5_1.2.1-1_arm64.deb ...
450s Unpacking libsnappy1v5:arm64 (1.2.1-1) ...
450s Selecting previously unselected package libblosc1:arm64.
450s Preparing to unpack .../059-libblosc1_1.21.5+ds-1build1_arm64.deb ...
450s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ...
450s Selecting previously unselected package libbz2-dev:arm64.
450s Preparing to unpack .../060-libbz2-dev_1.0.8-6_arm64.deb ...
450s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
450s Selecting previously unselected package libpixman-1-0:arm64.
450s Preparing to unpack .../061-libpixman-1-0_0.44.0-3_arm64.deb ...
450s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
450s Selecting previously unselected package libxcb-render0:arm64.
450s Preparing to unpack .../062-libxcb-render0_1.17.0-2_arm64.deb ...
450s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
450s Selecting previously unselected package libxcb-shm0:arm64.
450s Preparing to unpack .../063-libxcb-shm0_1.17.0-2_arm64.deb ...
450s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
450s Selecting previously unselected package libxrender1:arm64.
450s Preparing to unpack .../064-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
450s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
450s Selecting previously unselected package libcairo2:arm64.
450s Preparing to unpack .../065-libcairo2_1.18.2-2_arm64.deb ...
450s Unpacking libcairo2:arm64 (1.18.2-2) ...
450s Selecting previously unselected package libcfitsio10t64:arm64.
450s Preparing to unpack .../066-libcfitsio10t64_4.5.0-5_arm64.deb ...
450s Unpacking libcfitsio10t64:arm64 (4.5.0-5) ...
450s Selecting previously unselected package libdatrie1:arm64.
451s Preparing to unpack .../067-libdatrie1_0.2.13-3build1_arm64.deb ...
451s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
451s Selecting previously unselected package libde265-0:arm64.
451s Preparing to unpack .../068-libde265-0_1.0.15-1build4_arm64.deb ...
451s Unpacking libde265-0:arm64 (1.0.15-1build4) ...
451s Selecting previously unselected package libdeflate0:arm64.
451s Preparing to unpack .../069-libdeflate0_1.23-1_arm64.deb ...
451s Unpacking libdeflate0:arm64 (1.23-1) ...
451s Selecting previously unselected package libdeflate-dev:arm64.
451s Preparing to unpack .../070-libdeflate-dev_1.23-1_arm64.deb ...
451s Unpacking libdeflate-dev:arm64 (1.23-1) ...
451s Selecting previously unselected package libfyba0t64:arm64.
451s Preparing to unpack .../071-libfyba0t64_4.1.1-11build1_arm64.deb ...
451s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ...
451s Selecting previously unselected package libminizip1t64:arm64.
451s Preparing to unpack .../072-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
451s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
451s Selecting previously unselected package libfreexl1:arm64.
451s Preparing to unpack .../073-libfreexl1_2.0.0-1build2_arm64.deb ...
451s Unpacking libfreexl1:arm64 (2.0.0-1build2) ...
451s Selecting previously unselected package libgeos3.13.0:arm64.
451s Preparing to unpack .../074-libgeos3.13.0_3.13.0-1_arm64.deb ...
451s Unpacking libgeos3.13.0:arm64 (3.13.0-1) ...
451s Selecting previously unselected package libgeos-c1t64:arm64.
451s Preparing to unpack .../075-libgeos-c1t64_3.13.0-1_arm64.deb ...
451s Unpacking libgeos-c1t64:arm64 (3.13.0-1) ...
451s Selecting previously unselected package proj-data.
451s Preparing to unpack .../076-proj-data_9.5.1-1_all.deb ...
451s Unpacking proj-data (9.5.1-1) ...
451s Selecting previously unselected package libjbig0:arm64.
451s Preparing to unpack .../077-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
451s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
451s Selecting previously unselected package liblerc4:arm64.
451s Preparing to unpack .../078-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
451s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
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463s Setting up g++ (4:14.2.0-1ubuntu1) ...
463s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
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463s Setting up r-cran-class (7.3-23-1) ...
463s Setting up r-cran-polycub (0.9.1-1) ...
463s Setting up gfortran (4:14.2.0-1ubuntu1) ...
463s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
463s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
463s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
463s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
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463s Setting up r-base-dev (4.4.2-1build1) ...
463s Setting up r-cran-classint (0.4-11+dfsg-1) ...
463s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
463s Setting up libheif-plugin-aomdec:arm64 (1.19.5-1build1) ...
463s Setting up libheif-plugin-libde265:arm64 (1.19.5-1build1) ...
463s Setting up libheif1:arm64 (1.19.5-1build1) ...
463s Setting up libgdal36:arm64 (3.10.2+dfsg-1build1) ...
463s Setting up r-cran-sf (1.0-19+dfsg-1) ...
463s Processing triggers for install-info (7.1.1-1) ...
463s Processing triggers for libc-bin (2.40-4ubuntu1) ...
463s Processing triggers for man-db (2.13.0-1) ...
468s autopkgtest [13:48:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
468s autopkgtest [13:48:36]: test pkg-r-autopkgtest: [-----------------------
468s Test: Try to load the R library polyCub
468s 
468s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
468s Copyright (C) 2024 The R Foundation for Statistical Computing
468s Platform: aarch64-unknown-linux-gnu
468s 
468s R is free software and comes with ABSOLUTELY NO WARRANTY.
468s You are welcome to redistribute it under certain conditions.
468s Type 'license()' or 'licence()' for distribution details.
468s 
468s R is a collaborative project with many contributors.
468s Type 'contributors()' for more information and
468s 'citation()' on how to cite R or R packages in publications.
468s 
468s Type 'demo()' for some demos, 'help()' for on-line help, or
468s 'help.start()' for an HTML browser interface to help.
468s Type 'q()' to quit R.
468s 
468s > library('polyCub')
468s > 
468s > 
468s Other tests are currently unsupported!
468s They will be progressively added.
469s autopkgtest [13:48:37]: test pkg-r-autopkgtest: -----------------------]
469s pkg-r-autopkgtest    PASS
469s autopkgtest [13:48:37]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
469s autopkgtest [13:48:37]: @@@@@@@@@@@@@@@@@@@@ summary
469s run-unit-test        PASS
469s pkg-r-autopkgtest    PASS
486s nova [W] Using flock in prodstack6-arm64
486s Creating nova instance adt-plucky-arm64-r-cran-polycub-20250221-134048-juju-7f2275-prod-proposed-migration-environment-20-e44827d2-b5c1-4190-ad34-fd79b43df69e from image adt/ubuntu-plucky-arm64-server-20250221.img (UUID 7cc4cd7e-6f5b-4658-9b17-e38e7fa05fb0)...
486s nova [W] Timed out waiting for d3cba375-a48b-4857-9a3d-593f373bac66 to get deleted.
486s nova [W] Using flock in prodstack6-arm64
486s flock: timeout while waiting to get lock
486s Creating nova instance adt-plucky-arm64-r-cran-polycub-20250221-134048-juju-7f2275-prod-proposed-migration-environment-20-e44827d2-b5c1-4190-ad34-fd79b43df69e from image adt/ubuntu-plucky-arm64-server-20250221.img (UUID 7cc4cd7e-6f5b-4658-9b17-e38e7fa05fb0)...
486s nova [W] Timed out waiting for fe5ce0ab-e6c8-4d97-8e8b-c660f58d51df to get deleted.