0s autopkgtest [19:05:20]: starting date and time: 2024-11-01 19:05:20+0000 0s autopkgtest [19:05:20]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:05:20]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ecopixxk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:rmpi,src:openmpi --apt-upgrade r-cran-pls --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=rmpi/0.7-2.1-2 openmpi/5.0.5-3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-26.secgroup --name adt-plucky-arm64-r-cran-pls-20241101-190520-juju-7f2275-prod-proposed-migration-environment-15-f87aca27-9f2b-411b-9721-8f1caaf680a7 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 83s autopkgtest [19:06:43]: testbed dpkg architecture: arm64 83s autopkgtest [19:06:43]: testbed apt version: 2.9.8 83s autopkgtest [19:06:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 84s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 85s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [183 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [44.0 kB] 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2775 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [241 kB] 85s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 85s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [2023 kB] 85s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [36.5 kB] 86s Fetched 5433 kB in 1s (3835 kB/s) 86s Reading package lists... 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Calculating upgrade... 90s The following packages will be upgraded: 90s libevdev2 libftdi1-2 libinih1 nano python3-lazr.uri 90s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 374 kB of archives. 90s After this operation, 17.4 kB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libevdev2 arm64 1.13.3+dfsg-1 [36.0 kB] 90s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 nano arm64 8.2-1 [289 kB] 90s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libftdi1-2 arm64 1.5-7 [28.4 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libinih1 arm64 58-1ubuntu1 [7412 B] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lazr.uri all 1.0.6-4 [13.6 kB] 91s Fetched 374 kB in 0s (888 kB/s) 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 91s Preparing to unpack .../libevdev2_1.13.3+dfsg-1_arm64.deb ... 91s Unpacking libevdev2:arm64 (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 91s Preparing to unpack .../archives/nano_8.2-1_arm64.deb ... 91s Unpacking nano (8.2-1) over (8.1-1) ... 91s Preparing to unpack .../libftdi1-2_1.5-7_arm64.deb ... 91s Unpacking libftdi1-2:arm64 (1.5-7) over (1.5-6build5) ... 91s Preparing to unpack .../libinih1_58-1ubuntu1_arm64.deb ... 91s Unpacking libinih1:arm64 (58-1ubuntu1) over (55-1ubuntu2) ... 91s Preparing to unpack .../python3-lazr.uri_1.0.6-4_all.deb ... 91s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 91s Setting up libinih1:arm64 (58-1ubuntu1) ... 91s Setting up python3-lazr.uri (1.0.6-4) ... 91s Setting up libftdi1-2:arm64 (1.5-7) ... 91s Setting up nano (8.2-1) ... 92s Setting up libevdev2:arm64 (1.13.3+dfsg-1) ... 92s Processing triggers for man-db (2.12.1-3) ... 92s Processing triggers for install-info (7.1.1-1) ... 93s Processing triggers for libc-bin (2.40-1ubuntu3) ... 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 94s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 94s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 95s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 96s Reading package lists... 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s Calculating upgrade... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s autopkgtest [19:07:01]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 101s autopkgtest [19:07:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-pls 103s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pls 2.8-3-1 (dsc) [2097 B] 103s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pls 2.8-3-1 (tar) [4365 kB] 103s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pls 2.8-3-1 (diff) [2628 B] 104s gpgv: Signature made Thu Nov 23 08:20:11 2023 UTC 104s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 104s gpgv: issuer "tille@debian.org" 104s gpgv: Can't check signature: No public key 104s dpkg-source: warning: cannot verify inline signature for ./r-cran-pls_2.8-3-1.dsc: no acceptable signature found 104s autopkgtest [19:07:04]: testing package r-cran-pls version 2.8-3-1 104s autopkgtest [19:07:04]: build not needed 106s autopkgtest [19:07:06]: test run-unit-test: preparing testbed 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s The following additional packages will be installed: 109s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 109s libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdatrie1 libdeflate0 109s libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libfontconfig1 109s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhsa-runtime64-1 109s libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libjbig0 109s libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libllvm17t64 libmunge2 109s libopenmpi3t64 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 109s libpaper-utils libpaper1 libpciaccess0 libpixman-1-0 libpmix2t64 109s librdmacm1t64 libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 109s libtk8.6 libucx0 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxnvctrl0 109s libxrender1 libxss1 libxt6t64 mpi-default-bin ocl-icd-libopencl1 openmpi-bin 109s openmpi-common r-base-core r-cran-brio r-cran-callr r-cran-cli r-cran-crayon 109s r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi 109s r-cran-fs r-cran-glue r-cran-jsonlite r-cran-lifecycle r-cran-magrittr 109s r-cran-mass r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgload 109s r-cran-pls r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rematch2 109s r-cran-rlang r-cran-rmpi r-cran-rprojroot r-cran-runit r-cran-testthat 109s r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr unzip 109s x11-common xdg-utils zip 109s Suggested packages: 109s tcl8.6 tk8.6 opencl-icd gfortran | fortran-compiler elpa-ess r-doc-info 109s | r-doc-pdf r-mathlib r-base-html r-cran-rstudioapi r-cran-knitr 109s r-cran-rmarkdown r-cran-covr r-cran-bit64 r-cran-dbi r-cran-dplyr 109s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 109s r-cran-scales r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr 109s r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-htmltools 109s r-cran-purrr r-cran-tidyr 109s Recommended packages: 109s r-recommended r-base-dev r-doc-html r-cran-covr r-cran-mockery 109s r-cran-spelling r-cran-htmltools r-cran-htmlwidgets r-cran-knitr 109s r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-ggplot2 109s r-cran-lattice r-cran-unitizer r-cran-dbi r-cran-dplyr r-cran-rsqlite 109s r-cran-httr r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse 109s r-cran-lubridate r-cran-cpp11 r-cran-rcpp r-cran-bitops r-cran-mathjaxr 109s r-cran-remotes r-cran-usethis r-cran-codetools r-cran-curl r-cran-webfakes 109s r-cran-pingr r-cran-mockr r-cran-shiny r-cran-xml2 r-cran-data.table 109s r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown 109s r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 109s x11-utils x11-xserver-utils 110s The following NEW packages will be installed: 110s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 110s fonts-dejavu-mono libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdatrie1 110s libdeflate0 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 110s libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 110s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 110s libibumad3 libice6 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 110s libllvm17t64 libmunge2 libopenmpi3t64 libpango-1.0-0 libpangocairo-1.0-0 110s libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpixman-1-0 110s libpmix2t64 librdmacm1t64 libsharpyuv0 libsm6 libtcl8.6 libthai-data 110s libthai0 libtiff6 libtk8.6 libucx0 libwebp7 libxcb-render0 libxcb-shm0 110s libxft2 libxnvctrl0 libxrender1 libxss1 libxt6t64 mpi-default-bin 110s ocl-icd-libopencl1 openmpi-bin openmpi-common r-base-core r-cran-brio 110s r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj 110s r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue 110s r-cran-jsonlite r-cran-lifecycle r-cran-magrittr r-cran-mass r-cran-pillar 110s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgload r-cran-pls r-cran-praise 110s r-cran-processx r-cran-ps r-cran-r6 r-cran-rematch2 r-cran-rlang r-cran-rmpi 110s r-cran-rprojroot r-cran-runit r-cran-testthat r-cran-tibble r-cran-utf8 110s r-cran-vctrs r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip 110s 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 112 MB/112 MB of archives. 110s After this operation, 336 MB of additional disk space will be used. 110s Get:1 /tmp/autopkgtest.llNjGI/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [724 B] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 libllvm17t64 arm64 1:17.0.6-18 [24.9 MB] 111s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3build2 [14.1 MB] 111s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libdrm-amdgpu1 arm64 2.4.122-1 [20.9 kB] 111s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsakmt1 arm64 5.7.0-1build1 [63.6 kB] 111s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhsa-runtime64-1 arm64 5.7.1-2build1 [286 kB] 111s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamdhip64-5 arm64 5.7.1-4build1 [9668 kB] 111s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 111s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 111s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 111s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 111s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 111s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 111s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 111s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.21-1 [46.2 kB] 111s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10 [7922 B] 111s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 librdmacm1t64 arm64 52.0-2ubuntu1 [71.5 kB] 112s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfabric1 arm64 1.17.0-3ubuntu1 [542 kB] 112s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-7ubuntu1 [438 kB] 112s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-7ubuntu1 [145 kB] 112s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 112s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 9.0.0-1 [486 kB] 112s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc15 arm64 2.11.0-2 [160 kB] 112s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 112s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 112s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 112s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 112s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 112s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 112s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmunge2 arm64 0.5.15-4build1 [14.9 kB] 112s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libpciaccess0 arm64 0.17-3build1 [18.9 kB] 112s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxnvctrl0 arm64 510.47.03-0ubuntu4 [12.4 kB] 112s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 ocl-icd-libopencl1 arm64 2.3.2-1build1 [37.6 kB] 112s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhwloc-plugins arm64 2.11.0-2 [15.8 kB] 112s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpmix2t64 arm64 5.0.3-2 [662 kB] 112s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libibumad3 arm64 52.0-2ubuntu1 [29.3 kB] 112s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libibmad5 arm64 52.0-2ubuntu1 [43.1 kB] 112s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libucx0 arm64 1.17.0+ds-3build1 [1093 kB] 112s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 libopenmpi3t64 arm64 5.0.5-3 [2040 kB] 112s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 112s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 112s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.54.0+ds-2 [233 kB] 112s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-2 [48.8 kB] 112s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-2 [27.5 kB] 112s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 112s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 112s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 112s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 112s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 112s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 112s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 112s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 112s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 112s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 112s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 112s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 112s Get:62 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 openmpi-common all 5.0.5-3 [95.6 kB] 112s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 openmpi-bin arm64 5.0.5-3 [152 kB] 112s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14 [172 kB] 112s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 112s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 112s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB] 113s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 113s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 113s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 113s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.4-1 [352 kB] 113s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 113s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 113s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 113s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 113s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 113s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.36-1 [197 kB] 113s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 0.24.0-1 [93.5 kB] 113s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 113s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.4+dfsg-1 [244 kB] 113s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 113s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 113s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB] 113s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 113s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 113s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-61-1 [1107 kB] 113s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 113s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 113s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 113s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 113s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 113s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 113s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 113s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 113s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pls all 2.8-3-1 [4755 kB] 113s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 113s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 113s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 113s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 mpi-default-bin arm64 1.17 [2296 B] 113s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-rmpi arm64 0.7-2.1-2 [272 kB] 113s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 113s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 113s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.1.1-1 [1629 kB] 115s Preconfiguring packages ... 115s Fetched 112 MB in 4s (25.7 MB/s) 115s Selecting previously unselected package fonts-dejavu-mono. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 115s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 115s Unpacking fonts-dejavu-mono (2.37-8) ... 115s Selecting previously unselected package fonts-dejavu-core. 115s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 115s Unpacking fonts-dejavu-core (2.37-8) ... 115s Selecting previously unselected package fontconfig-config. 115s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 116s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 116s Selecting previously unselected package libfontconfig1:arm64. 116s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 116s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 116s Selecting previously unselected package fontconfig. 116s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 116s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 116s Selecting previously unselected package libllvm17t64:arm64. 116s Preparing to unpack .../005-libllvm17t64_1%3a17.0.6-18_arm64.deb ... 116s Unpacking libllvm17t64:arm64 (1:17.0.6-18) ... 117s Selecting previously unselected package libamd-comgr2:arm64. 117s Preparing to unpack .../006-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_arm64.deb ... 117s Unpacking libamd-comgr2:arm64 (6.0+git20231212.4510c28+dfsg-3build2) ... 117s Selecting previously unselected package libdrm-amdgpu1:arm64. 117s Preparing to unpack .../007-libdrm-amdgpu1_2.4.122-1_arm64.deb ... 117s Unpacking libdrm-amdgpu1:arm64 (2.4.122-1) ... 118s Selecting previously unselected package libhsakmt1:arm64. 118s Preparing to unpack .../008-libhsakmt1_5.7.0-1build1_arm64.deb ... 118s Unpacking libhsakmt1:arm64 (5.7.0-1build1) ... 118s Selecting previously unselected package libhsa-runtime64-1. 118s Preparing to unpack .../009-libhsa-runtime64-1_5.7.1-2build1_arm64.deb ... 118s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 118s Selecting previously unselected package libamdhip64-5. 118s Preparing to unpack .../010-libamdhip64-5_5.7.1-4build1_arm64.deb ... 118s Unpacking libamdhip64-5 (5.7.1-4build1) ... 118s Selecting previously unselected package libblas3:arm64. 118s Preparing to unpack .../011-libblas3_3.12.0-3build2_arm64.deb ... 118s Unpacking libblas3:arm64 (3.12.0-3build2) ... 118s Selecting previously unselected package libpixman-1-0:arm64. 118s Preparing to unpack .../012-libpixman-1-0_0.42.2-1build1_arm64.deb ... 118s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 118s Selecting previously unselected package libxcb-render0:arm64. 118s Preparing to unpack .../013-libxcb-render0_1.17.0-2_arm64.deb ... 118s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 118s Selecting previously unselected package libxcb-shm0:arm64. 118s Preparing to unpack .../014-libxcb-shm0_1.17.0-2_arm64.deb ... 118s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 118s Selecting previously unselected package libxrender1:arm64. 118s Preparing to unpack .../015-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 118s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 118s Selecting previously unselected package libcairo2:arm64. 118s Preparing to unpack .../016-libcairo2_1.18.2-2_arm64.deb ... 118s Unpacking libcairo2:arm64 (1.18.2-2) ... 118s Selecting previously unselected package libdatrie1:arm64. 118s Preparing to unpack .../017-libdatrie1_0.2.13-3build1_arm64.deb ... 118s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 118s Selecting previously unselected package libdeflate0:arm64. 118s Preparing to unpack .../018-libdeflate0_1.21-1_arm64.deb ... 118s Unpacking libdeflate0:arm64 (1.21-1) ... 118s Selecting previously unselected package libevent-pthreads-2.1-7t64:arm64. 118s Preparing to unpack .../019-libevent-pthreads-2.1-7t64_2.1.12-stable-10_arm64.deb ... 118s Unpacking libevent-pthreads-2.1-7t64:arm64 (2.1.12-stable-10) ... 118s Selecting previously unselected package librdmacm1t64:arm64. 118s Preparing to unpack .../020-librdmacm1t64_52.0-2ubuntu1_arm64.deb ... 118s Unpacking librdmacm1t64:arm64 (52.0-2ubuntu1) ... 118s Selecting previously unselected package libfabric1:arm64. 118s Preparing to unpack .../021-libfabric1_1.17.0-3ubuntu1_arm64.deb ... 118s Unpacking libfabric1:arm64 (1.17.0-3ubuntu1) ... 118s Selecting previously unselected package libgfortran5:arm64. 118s Preparing to unpack .../022-libgfortran5_14.2.0-7ubuntu1_arm64.deb ... 118s Unpacking libgfortran5:arm64 (14.2.0-7ubuntu1) ... 118s Selecting previously unselected package libgomp1:arm64. 119s Preparing to unpack .../023-libgomp1_14.2.0-7ubuntu1_arm64.deb ... 119s Unpacking libgomp1:arm64 (14.2.0-7ubuntu1) ... 119s Selecting previously unselected package libgraphite2-3:arm64. 119s Preparing to unpack .../024-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 119s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 119s Selecting previously unselected package libharfbuzz0b:arm64. 119s Preparing to unpack .../025-libharfbuzz0b_9.0.0-1_arm64.deb ... 119s Unpacking libharfbuzz0b:arm64 (9.0.0-1) ... 119s Selecting previously unselected package libhwloc15:arm64. 119s Preparing to unpack .../026-libhwloc15_2.11.0-2_arm64.deb ... 119s Unpacking libhwloc15:arm64 (2.11.0-2) ... 119s Selecting previously unselected package x11-common. 119s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu3_all.deb ... 119s Unpacking x11-common (1:7.7+23ubuntu3) ... 119s Selecting previously unselected package libice6:arm64. 119s Preparing to unpack .../028-libice6_2%3a1.0.10-1build3_arm64.deb ... 119s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 119s Selecting previously unselected package libjpeg-turbo8:arm64. 119s Preparing to unpack .../029-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 119s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 119s Selecting previously unselected package libjpeg8:arm64. 119s Preparing to unpack .../030-libjpeg8_8c-2ubuntu11_arm64.deb ... 119s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 119s Selecting previously unselected package liblapack3:arm64. 119s Preparing to unpack .../031-liblapack3_3.12.0-3build2_arm64.deb ... 119s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 119s Selecting previously unselected package liblerc4:arm64. 119s Preparing to unpack .../032-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 119s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 119s Selecting previously unselected package libmunge2:arm64. 119s Preparing to unpack .../033-libmunge2_0.5.15-4build1_arm64.deb ... 119s Unpacking libmunge2:arm64 (0.5.15-4build1) ... 119s Selecting previously unselected package libpciaccess0:arm64. 119s Preparing to unpack .../034-libpciaccess0_0.17-3build1_arm64.deb ... 119s Unpacking libpciaccess0:arm64 (0.17-3build1) ... 119s Selecting previously unselected package libxnvctrl0:arm64. 119s Preparing to unpack .../035-libxnvctrl0_510.47.03-0ubuntu4_arm64.deb ... 119s Unpacking libxnvctrl0:arm64 (510.47.03-0ubuntu4) ... 119s Selecting previously unselected package ocl-icd-libopencl1:arm64. 120s Preparing to unpack .../036-ocl-icd-libopencl1_2.3.2-1build1_arm64.deb ... 120s Unpacking ocl-icd-libopencl1:arm64 (2.3.2-1build1) ... 120s Selecting previously unselected package libhwloc-plugins:arm64. 120s Preparing to unpack .../037-libhwloc-plugins_2.11.0-2_arm64.deb ... 120s Unpacking libhwloc-plugins:arm64 (2.11.0-2) ... 120s Selecting previously unselected package libpmix2t64:arm64. 120s Preparing to unpack .../038-libpmix2t64_5.0.3-2_arm64.deb ... 120s Unpacking libpmix2t64:arm64 (5.0.3-2) ... 120s Selecting previously unselected package libibumad3:arm64. 120s Preparing to unpack .../039-libibumad3_52.0-2ubuntu1_arm64.deb ... 120s Unpacking libibumad3:arm64 (52.0-2ubuntu1) ... 120s Selecting previously unselected package libibmad5:arm64. 120s Preparing to unpack .../040-libibmad5_52.0-2ubuntu1_arm64.deb ... 120s Unpacking libibmad5:arm64 (52.0-2ubuntu1) ... 120s Selecting previously unselected package libucx0:arm64. 120s Preparing to unpack .../041-libucx0_1.17.0+ds-3build1_arm64.deb ... 120s Unpacking libucx0:arm64 (1.17.0+ds-3build1) ... 120s Selecting previously unselected package libopenmpi3t64:arm64. 120s Preparing to unpack .../042-libopenmpi3t64_5.0.5-3_arm64.deb ... 120s Unpacking libopenmpi3t64:arm64 (5.0.5-3) ... 120s Selecting previously unselected package libthai-data. 120s Preparing to unpack .../043-libthai-data_0.1.29-2build1_all.deb ... 120s Unpacking libthai-data (0.1.29-2build1) ... 120s Selecting previously unselected package libthai0:arm64. 120s Preparing to unpack .../044-libthai0_0.1.29-2build1_arm64.deb ... 120s Unpacking libthai0:arm64 (0.1.29-2build1) ... 120s Selecting previously unselected package libpango-1.0-0:arm64. 120s Preparing to unpack .../045-libpango-1.0-0_1.54.0+ds-2_arm64.deb ... 120s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-2) ... 120s Selecting previously unselected package libpangoft2-1.0-0:arm64. 120s Preparing to unpack .../046-libpangoft2-1.0-0_1.54.0+ds-2_arm64.deb ... 120s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-2) ... 120s Selecting previously unselected package libpangocairo-1.0-0:arm64. 120s Preparing to unpack .../047-libpangocairo-1.0-0_1.54.0+ds-2_arm64.deb ... 120s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-2) ... 120s Selecting previously unselected package libpaper1:arm64. 120s Preparing to unpack .../048-libpaper1_1.1.29build1_arm64.deb ... 120s Unpacking libpaper1:arm64 (1.1.29build1) ... 120s Selecting previously unselected package libpaper-utils. 120s Preparing to unpack .../049-libpaper-utils_1.1.29build1_arm64.deb ... 120s Unpacking libpaper-utils (1.1.29build1) ... 120s Selecting previously unselected package libsharpyuv0:arm64. 120s Preparing to unpack .../050-libsharpyuv0_1.4.0-0.1_arm64.deb ... 120s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 120s Selecting previously unselected package libsm6:arm64. 120s Preparing to unpack .../051-libsm6_2%3a1.2.3-1build3_arm64.deb ... 120s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 120s Selecting previously unselected package libtcl8.6:arm64. 120s Preparing to unpack .../052-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 120s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 121s Selecting previously unselected package libjbig0:arm64. 121s Preparing to unpack .../053-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 121s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 121s Selecting previously unselected package libwebp7:arm64. 121s Preparing to unpack .../054-libwebp7_1.4.0-0.1_arm64.deb ... 121s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 121s Selecting previously unselected package libtiff6:arm64. 121s Preparing to unpack .../055-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 121s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 121s Selecting previously unselected package libxft2:arm64. 121s Preparing to unpack .../056-libxft2_2.3.6-1build1_arm64.deb ... 121s Unpacking libxft2:arm64 (2.3.6-1build1) ... 121s Selecting previously unselected package libxss1:arm64. 121s Preparing to unpack .../057-libxss1_1%3a1.2.3-1build3_arm64.deb ... 121s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 121s Selecting previously unselected package libtk8.6:arm64. 121s Preparing to unpack .../058-libtk8.6_8.6.14-1build1_arm64.deb ... 121s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 121s Selecting previously unselected package libxt6t64:arm64. 121s Preparing to unpack .../059-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 121s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 121s Selecting previously unselected package openmpi-common. 121s Preparing to unpack .../060-openmpi-common_5.0.5-3_all.deb ... 121s Unpacking openmpi-common (5.0.5-3) ... 121s Selecting previously unselected package openmpi-bin. 121s Preparing to unpack .../061-openmpi-bin_5.0.5-3_arm64.deb ... 121s Unpacking openmpi-bin (5.0.5-3) ... 121s Selecting previously unselected package zip. 121s Preparing to unpack .../062-zip_3.0-14_arm64.deb ... 121s Unpacking zip (3.0-14) ... 121s Selecting previously unselected package unzip. 121s Preparing to unpack .../063-unzip_6.0-28ubuntu6_arm64.deb ... 121s Unpacking unzip (6.0-28ubuntu6) ... 121s Selecting previously unselected package xdg-utils. 121s Preparing to unpack .../064-xdg-utils_1.2.1-0ubuntu1_all.deb ... 121s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 121s Selecting previously unselected package r-base-core. 121s Preparing to unpack .../065-r-base-core_4.4.1-1_arm64.deb ... 121s Unpacking r-base-core (4.4.1-1) ... 122s Selecting previously unselected package r-cran-brio. 122s Preparing to unpack .../066-r-cran-brio_1.1.5-1_arm64.deb ... 122s Unpacking r-cran-brio (1.1.5-1) ... 122s Selecting previously unselected package r-cran-ps. 122s Preparing to unpack .../067-r-cran-ps_1.7.6-1_arm64.deb ... 122s Unpacking r-cran-ps (1.7.6-1) ... 122s Selecting previously unselected package r-cran-r6. 122s Preparing to unpack .../068-r-cran-r6_2.5.1-1_all.deb ... 122s Unpacking r-cran-r6 (2.5.1-1) ... 122s Selecting previously unselected package r-cran-processx. 122s Preparing to unpack .../069-r-cran-processx_3.8.4-1_arm64.deb ... 122s Unpacking r-cran-processx (3.8.4-1) ... 122s Selecting previously unselected package r-cran-callr. 122s Preparing to unpack .../070-r-cran-callr_3.7.6-1_all.deb ... 122s Unpacking r-cran-callr (3.7.6-1) ... 122s Selecting previously unselected package r-cran-cli. 122s Preparing to unpack .../071-r-cran-cli_3.6.2-1_arm64.deb ... 122s Unpacking r-cran-cli (3.6.2-1) ... 122s Selecting previously unselected package r-cran-crayon. 122s Preparing to unpack .../072-r-cran-crayon_1.5.2-1_all.deb ... 122s Unpacking r-cran-crayon (1.5.2-1) ... 122s Selecting previously unselected package r-cran-desc. 122s Preparing to unpack .../073-r-cran-desc_1.4.3-1_all.deb ... 122s Unpacking r-cran-desc (1.4.3-1) ... 122s Selecting previously unselected package r-cran-diffobj. 122s Preparing to unpack .../074-r-cran-diffobj_0.3.5-1_arm64.deb ... 122s Unpacking r-cran-diffobj (0.3.5-1) ... 122s Selecting previously unselected package r-cran-digest. 122s Preparing to unpack .../075-r-cran-digest_0.6.36-1_arm64.deb ... 122s Unpacking r-cran-digest (0.6.36-1) ... 122s Selecting previously unselected package r-cran-evaluate. 122s Preparing to unpack .../076-r-cran-evaluate_0.24.0-1_all.deb ... 122s Unpacking r-cran-evaluate (0.24.0-1) ... 122s Selecting previously unselected package r-cran-fansi. 122s Preparing to unpack .../077-r-cran-fansi_1.0.5-1_arm64.deb ... 122s Unpacking r-cran-fansi (1.0.5-1) ... 123s Selecting previously unselected package r-cran-fs. 123s Preparing to unpack .../078-r-cran-fs_1.6.4+dfsg-1_arm64.deb ... 123s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 123s Selecting previously unselected package r-cran-glue. 123s Preparing to unpack .../079-r-cran-glue_1.7.0-1_arm64.deb ... 123s Unpacking r-cran-glue (1.7.0-1) ... 123s Selecting previously unselected package r-cran-jsonlite. 123s Preparing to unpack .../080-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 123s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 123s Selecting previously unselected package r-cran-rlang. 123s Preparing to unpack .../081-r-cran-rlang_1.1.4-1_arm64.deb ... 123s Unpacking r-cran-rlang (1.1.4-1) ... 123s Selecting previously unselected package r-cran-lifecycle. 123s Preparing to unpack .../082-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 123s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 123s Selecting previously 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install-info (7.1.1-1) ... 130s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s (Reading database ... 85988 files and directories currently installed.) 138s Removing autopkgtest-satdep (0) ... 139s autopkgtest [19:07:39]: test run-unit-test: [----------------------- 139s BEGIN TEST test_import.R 139s 139s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: aarch64-unknown-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 139s > ### test.R: Runs all RUnit tests that work when the functions are accessed by direct 139s > ### import (i.e., pls::mvr(...)) 139s > 139s > 139s > ## Get warnings at once 139s > options(warn = 1) 139s > 139s > ## Make sure the global environment is clean: 139s > rm(list = ls(all = TRUE)) 139s > 139s > ## Get the data 139s > data(yarn, package = "pls") 139s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 139s RNGkind: Marsaglia-Multicarry has poor statistical properties 139s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 139s RNGkind: severe deviations from normality for Kinderman-Ramage + Marsaglia-Multicarry 139s > data(oliveoil, package = "pls") 139s > data(gasoline, package = "pls") 139s > 139s > ## Get RUnit and utility functions 139s > library(RUnit) 139s > source("RUnit/common/utils.R") 139s > 139s > ## Make checkException silent 139s > opts <- getOption("RUnit") 139s > opts$silent <- TRUE 139s > options(RUnit = opts) 139s > 139s > ## Define and check test suite 139s > testdirs <- c("RUnit/import") 139s > plsTestSuite <- defineTestSuite("pls", testdirs) 139s > isValidTestSuite(plsTestSuite) 139s [1] TRUE 139s > 139s > ## Run test suite 139s > printTextProtocol(res <- runTestSuite(plsTestSuite)) 139s 139s 139s Executing test function test.mvr ... done successfully. 139s 139s 139s 139s Executing test function test.pcr ... done successfully. 139s 139s 139s 139s Executing test function test.plsr ... done successfully. 139s 139s 139s 139s Executing test function test.options ... done successfully. 139s 139s RUNIT TEST PROTOCOL -- Fri Nov 1 19:07:39 2024 139s *********************************************** 139s Number of test functions: 4 139s Number of errors: 0 139s Number of failures: 0 139s 139s 139s 1 Test Suite : 139s pls - 4 test functions, 0 errors, 0 failures 139s 139s 139s 139s Details 139s *************************** 139s Test Suite: pls 139s Test function regexp: ^test.+ 139s Test file regexp: ^runit.+\.[rR]$ 139s Involved directory: 139s RUnit/import 139s --------------------------- 139s Test file: RUnit/import/runit.fit.R 139s test.mvr: (1 checks) ... OK (0.02 seconds) 139s test.pcr: (1 checks) ... OK (0 seconds) 139s test.plsr: (1 checks) ... OK (0 seconds) 139s --------------------------- 139s Test file: RUnit/import/runit.options.R 139s test.options: (2 checks) ... OK (0 seconds) 139s > if (res$pls$nFail > 0 || res$pls$nErr > 0) stop("One or more tests failed") 139s > 139s BEGIN TEST test_library.R 139s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 139s RNGkind: Marsaglia-Multicarry has poor statistical properties 139s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 139s RNGkind: severe deviations from normality for Kinderman-Ramage + Marsaglia-Multicarry 139s 139s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: aarch64-unknown-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 140s > ### test.R: Runs all RUnit tests that work when the package is loaded with 140s > ### library() or require() 140s > 140s > 140s > ## Get warnings at once 140s > options(warn = 1) 140s > 140s > ## Make sure the global environment is clean: 140s > rm(list = ls(all = TRUE)) 140s > 140s > ## Get the pls functions and data 140s > library(pls) 140s 140s Attaching package: ‘pls’ 140s 140s The following object is masked from ‘package:stats’: 140s 140s loadings 140s 140s > 140s > ## Get RUnit and utility functions 140s > library(RUnit) 140s > source("RUnit/common/utils.R") 140s > 140s > ## Make checkException silent 140s > opts <- getOption("RUnit") 140s > opts$silent <- TRUE 140s > options(RUnit = opts) 140s > 140s > ## Define and check test suite 140s > testdirs <- c("RUnit/common", "RUnit/library") 140s > plsTestSuite <- defineTestSuite("pls", testdirs) 140s > isValidTestSuite(plsTestSuite) 140s [1] TRUE 140s > 140s > ## Run test suite 140s > printTextProtocol(res <- runTestSuite(plsTestSuite)) 140s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 140s RNGkind: Marsaglia-Multicarry has poor statistical properties 140s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 140s RNGkind: severe deviations from normality for Kinderman-Ramage + Marsaglia-Multicarry 140s 140s 140s Executing test function test.plsrRes ... Timing stopped at: 0.143 0.015 0.158 140s done successfully. 140s 140s Error in checkEquals(scalecomps(refmod, scale = TRUE), scaled.simplsmod) : 140s Component “loadings”: Mean relative difference: 1.709882e-08 140s 140s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 140s RNGkind: Marsaglia-Multicarry has poor statistical properties 140s Warning in RNGkind(kind = testSuite$rngKind, normal.kind = testSuite$rngNormalKind) : 140s RNGkind: severe deviations from normality for Kinderman-Ramage + Marsaglia-Multicarry 140s 140s 140s Executing test function test.CV ... done successfully. 140s 140s 140s 140s Executing test function test.cvsegments ... done successfully. 140s 140s 140s 140s Executing test function test.jack.test ... done successfully. 140s 140s 140s 140s Executing test function test.var.jack ... done successfully. 140s 140s 140s 140s Executing test function test.argErrors ... done successfully. 140s 140s 140s 140s Executing test function test.dimMSEP ... done successfully. 140s 140s 140s 140s Executing test function test.dimR2 ... done successfully. 140s 140s 140s 140s Executing test function test.estimates ... done successfully. 140s 140s 140s 141s Executing test function test.MSEPmissing ... done successfully. 141s 141s 141s 141s Executing test function test.options ... done successfully. 141s 141s 141s 141s Executing test function test.NAtest ... done successfully. 141s 141s 141s 141s Executing test function test.NAtrain ... done successfully. 141s 141s 141s 142s Executing test function test.crossval.parallel ... Loading required package: parallel 144s done successfully. 144s 144s 144s 145s Executing test function test.mvrCv.parallel ... done successfully. 145s 145s 145s 145s Executing test function test.parallel.cleanup ... done successfully. 145s 145s 145s 145s Executing test function test.wrapper_eval ... done successfully. 145s 145s 145s 145s Executing test function test.wrapper_results ... done successfully. 145s 145s RUNIT TEST PROTOCOL -- Fri Nov 1 19:07:45 2024 145s *********************************************** 145s Number of test functions: 18 145s Number of errors: 0 145s Number of failures: 1 145s 145s 145s 1 Test Suite : 145s pls - 18 test functions, 0 errors, 1 failure 145s FAILURE in test.plsrRes: Error in checkEquals(scalecomps(refmod, scale = TRUE), scaled.simplsmod) : 145s Component “loadings”: Mean relative difference: 1.709882e-08 145s 145s 145s 145s 145s Details 145s *************************** 145s Test Suite: pls 145s Test function regexp: ^test.+ 145s Test file regexp: ^runit.+\.[rR]$ 145s Involved directories: 145s RUnit/common 145s RUnit/library 145s --------------------------- 145s Test file: RUnit/common/runit.algorithms.R 145s test.plsrRes: FAILURE !! (check number 5) 145s Error in checkEquals(scalecomps(refmod, scale = TRUE), scaled.simplsmod) : 145s Component “loadings”: Mean relative difference: 1.709882e-08 145s 145s --------------------------- 145s Test file: RUnit/common/runit.CV.R 145s test.CV: (9 checks) ... OK (0.24 seconds) 145s test.cvsegments: (18 checks) ... OK (0 seconds) 145s --------------------------- 145s Test file: RUnit/common/runit.jackknife.R 145s test.jack.test: (8 checks) ... OK (0.04 seconds) 145s test.var.jack: (8 checks) ... OK (0.25 seconds) 145s --------------------------- 145s Test file: RUnit/common/runit.mvrVal.R 145s test.argErrors: (3 checks) ... OK (0.05 seconds) 145s test.dimMSEP: (120 checks) ... OK (0.06 seconds) 145s test.dimR2: (104 checks) ... OK (0.06 seconds) 145s test.estimates: (6 checks) ... OK (0.02 seconds) 145s test.MSEPmissing: (8 checks) ... OK (0.03 seconds) 145s --------------------------- 145s Test file: RUnit/common/runit.options.R 145s test.options: (14 checks) ... OK (0 seconds) 145s --------------------------- 145s Test file: RUnit/common/runit.predict.R 145s test.NAtest: (14 checks) ... OK (0.01 seconds) 145s test.NAtrain: (32 checks) ... OK (0.03 seconds) 145s --------------------------- 145s Test file: RUnit/library/runit.CV.R 145s test.crossval.parallel: (5 checks) ... OK (2.99 seconds) 145s test.mvrCv.parallel: (5 checks) ... OK (1.31 seconds) 145s test.parallel.cleanup: (0 checks) ... OK (0 seconds) 145s --------------------------- 145s Test file: RUnit/library/runit.mvr_wrappers.R 145s test.wrapper_eval: (3 checks) ... OK (0 seconds) 145s test.wrapper_results: (3 checks) ... OK (0.22 seconds) 145s There were 12 warnings (use warnings() to see them) 145s > if (res$pls$nFail > 0 || res$pls$nErr > 0) stop("One or more tests failed") 145s Error: One or more tests failed 145s Execution halted 145s autopkgtest [19:07:45]: test run-unit-test: -----------------------] 147s autopkgtest [19:07:47]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 147s run-unit-test FAIL non-zero exit status 1 148s autopkgtest [19:07:48]: test pkg-r-autopkgtest: preparing testbed 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Starting pkgProblemResolver with broken count: 0 150s Starting 2 pkgProblemResolver with broken count: 0 150s Done 151s The following additional packages will be installed: 151s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 151s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 151s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 151s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 151s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 151s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 151s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 151s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 151s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 151s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 151s zlib1g-dev 151s Suggested packages: 151s cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib 151s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 151s gdb-aarch64-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev 151s liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-14-doc 151s texlive-base texlive-latex-base texlive-plain-generic 151s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 151s texlive-latex-recommended texlive-latex-extra texinfo 151s Recommended packages: 151s bzip2-doc libpng-tools 151s The following NEW packages will be installed: 151s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu 151s cpp-aarch64-linux-gnu dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu 151s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 151s gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu 151s gfortran-aarch64-linux-gnu icu-devtools libasan8 libblas-dev libbz2-dev 151s libcc1-0 libdeflate-dev libgcc-14-dev libgfortran-14-dev libhwasan0 151s libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 151s liblapack-dev liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 151s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 151s libreadline-dev libstdc++-14-dev libtirpc-dev libtsan2 libubsan1 151s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 151s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 151s Need to get 92.0 MB/92.0 MB of archives. 151s After this operation, 330 MB of additional disk space will be used. 151s Get:1 /tmp/autopkgtest.llNjGI/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B] 151s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 152s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [10.6 MB] 152s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-7ubuntu1 [1030 B] 152s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 152s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 152s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-7ubuntu1 [49.7 kB] 152s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-7ubuntu1 [27.8 kB] 152s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-7ubuntu1 [2893 kB] 152s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-7ubuntu1 [1283 kB] 152s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-7ubuntu1 [2691 kB] 152s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-7ubuntu1 [1151 kB] 153s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-7ubuntu1 [1599 kB] 153s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-7ubuntu1 [2594 kB] 153s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [20.9 MB] 153s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-7ubuntu1 [515 kB] 153s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 153s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 153s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-7ubuntu1 [2474 kB] 153s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [12.1 MB] 154s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-7ubuntu1 [19.8 kB] 154s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 154s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 154s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 154s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 154s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-7ubuntu1 [498 kB] 154s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [11.4 MB] 154s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-7ubuntu1 [11.6 kB] 154s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B] 154s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B] 154s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 74.2-1ubuntu4 [210 kB] 154s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-3build2 [120 kB] 154s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 154s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.21-1 [53.8 kB] 154s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 74.2-1ubuntu4 [11.9 MB] 155s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 155s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 155s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 155s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-3build2 [4419 kB] 155s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB] 155s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 155s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB] 155s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B] 155s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB] 155s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-3ubuntu1 [31.5 kB] 155s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 155s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-1 [268 kB] 155s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-5 [179 kB] 155s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB] 155s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-3ubuntu1 [20.9 kB] 155s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-3ubuntu1 [16.8 kB] 155s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 155s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.1-1 [4338 B] 155s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 155s Fetched 92.0 MB in 4s (24.9 MB/s) 155s Selecting previously unselected package libisl23:arm64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 85988 files and directories currently installed.) 155s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 155s Unpacking libisl23:arm64 (0.27-1) ... 156s Selecting previously unselected package libmpc3:arm64. 156s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 156s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 156s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 156s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package cpp-14. 156s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package cpp-aarch64-linux-gnu. 156s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 156s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 156s Selecting previously unselected package cpp. 156s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 156s Unpacking cpp (4:14.1.0-2ubuntu1) ... 156s Selecting previously unselected package libcc1-0:arm64. 156s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libcc1-0:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package libitm1:arm64. 156s Preparing to unpack .../07-libitm1_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libitm1:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package libasan8:arm64. 156s Preparing to unpack .../08-libasan8_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libasan8:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package liblsan0:arm64. 156s Preparing to unpack .../09-liblsan0_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking liblsan0:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package libtsan2:arm64. 156s Preparing to unpack .../10-libtsan2_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libtsan2:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package libubsan1:arm64. 156s Preparing to unpack .../11-libubsan1_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libubsan1:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package libhwasan0:arm64. 156s Preparing to unpack .../12-libhwasan0_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libhwasan0:arm64 (14.2.0-7ubuntu1) ... 156s Selecting previously unselected package libgcc-14-dev:arm64. 156s Preparing to unpack .../13-libgcc-14-dev_14.2.0-7ubuntu1_arm64.deb ... 156s Unpacking libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 157s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 157s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 157s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 157s Selecting previously unselected package gcc-14. 157s Preparing to unpack .../15-gcc-14_14.2.0-7ubuntu1_arm64.deb ... 157s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 157s Selecting previously unselected package gcc-aarch64-linux-gnu. 157s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 157s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 157s Selecting previously unselected package gcc. 157s Preparing to unpack .../17-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 157s Unpacking gcc (4:14.1.0-2ubuntu1) ... 157s Selecting previously unselected package libstdc++-14-dev:arm64. 157s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-7ubuntu1_arm64.deb ... 157s Unpacking libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 157s Selecting previously unselected package g++-14-aarch64-linux-gnu. 157s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 157s Unpacking g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 158s Selecting previously unselected package g++-14. 158s Preparing to unpack .../20-g++-14_14.2.0-7ubuntu1_arm64.deb ... 158s Unpacking g++-14 (14.2.0-7ubuntu1) ... 158s Selecting previously unselected package g++-aarch64-linux-gnu. 158s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 158s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 158s Selecting previously unselected package g++. 158s Preparing to unpack .../22-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 158s Unpacking g++ (4:14.1.0-2ubuntu1) ... 158s Selecting previously unselected package build-essential. 158s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 158s Unpacking build-essential (12.10ubuntu1) ... 158s Selecting previously unselected package dctrl-tools. 158s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 158s Unpacking dctrl-tools (2.24-3build3) ... 158s Selecting previously unselected package libgfortran-14-dev:arm64. 158s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-7ubuntu1_arm64.deb ... 158s Unpacking libgfortran-14-dev:arm64 (14.2.0-7ubuntu1) ... 158s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 158s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 158s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 158s Selecting previously unselected package gfortran-14. 158s Preparing to unpack .../27-gfortran-14_14.2.0-7ubuntu1_arm64.deb ... 158s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 158s Selecting previously unselected package gfortran-aarch64-linux-gnu. 158s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 158s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 158s Selecting previously unselected package gfortran. 158s Preparing to unpack .../29-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ... 158s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 158s Selecting previously unselected package icu-devtools. 158s Preparing to unpack .../30-icu-devtools_74.2-1ubuntu4_arm64.deb ... 158s Unpacking icu-devtools (74.2-1ubuntu4) ... 159s Selecting previously unselected package libblas-dev:arm64. 159s Preparing to unpack .../31-libblas-dev_3.12.0-3build2_arm64.deb ... 159s Unpacking libblas-dev:arm64 (3.12.0-3build2) ... 159s Selecting previously unselected package libbz2-dev:arm64. 159s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 159s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 159s Selecting previously unselected package libdeflate-dev:arm64. 159s Preparing to unpack .../33-libdeflate-dev_1.21-1_arm64.deb ... 159s Unpacking libdeflate-dev:arm64 (1.21-1) ... 159s Selecting previously unselected package libicu-dev:arm64. 159s Preparing to unpack .../34-libicu-dev_74.2-1ubuntu4_arm64.deb ... 159s Unpacking libicu-dev:arm64 (74.2-1ubuntu4) ... 159s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 159s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 159s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 159s Selecting previously unselected package libjpeg8-dev:arm64. 159s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 159s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 159s Selecting previously unselected package libjpeg-dev:arm64. 159s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 159s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 159s Selecting previously unselected package liblapack-dev:arm64. 159s Preparing to unpack .../38-liblapack-dev_3.12.0-3build2_arm64.deb ... 159s Unpacking liblapack-dev:arm64 (3.12.0-3build2) ... 159s Selecting previously unselected package libncurses-dev:arm64. 159s Preparing to unpack .../39-libncurses-dev_6.5-2_arm64.deb ... 159s Unpacking libncurses-dev:arm64 (6.5-2) ... 159s Selecting previously unselected package libpcre2-16-0:arm64. 159s Preparing to unpack .../40-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ... 159s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 159s Selecting previously unselected package libpcre2-32-0:arm64. 159s Preparing to unpack .../41-libpcre2-32-0_10.42-4ubuntu3_arm64.deb ... 159s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 159s Selecting previously unselected package libpcre2-posix3:arm64. 159s Preparing to unpack .../42-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ... 159s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 159s Selecting previously unselected package libpcre2-dev:arm64. 159s Preparing to unpack .../43-libpcre2-dev_10.42-4ubuntu3_arm64.deb ... 159s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ... 160s Selecting previously unselected package libpkgconf3:arm64. 160s Preparing to unpack .../44-libpkgconf3_1.8.1-3ubuntu1_arm64.deb ... 160s Unpacking libpkgconf3:arm64 (1.8.1-3ubuntu1) ... 160s Selecting previously unselected package zlib1g-dev:arm64. 160s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 160s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 160s Selecting previously unselected package libpng-dev:arm64. 160s Preparing to unpack .../46-libpng-dev_1.6.44-1_arm64.deb ... 160s Unpacking libpng-dev:arm64 (1.6.44-1) ... 160s Selecting previously unselected package libreadline-dev:arm64. 160s Preparing to unpack .../47-libreadline-dev_8.2-5_arm64.deb ... 160s Unpacking libreadline-dev:arm64 (8.2-5) ... 160s Selecting previously unselected package liblzma-dev:arm64. 160s Preparing to unpack .../48-liblzma-dev_5.6.2-2_arm64.deb ... 160s Unpacking liblzma-dev:arm64 (5.6.2-2) ... 160s Selecting previously unselected package pkgconf-bin. 160s Preparing to unpack .../49-pkgconf-bin_1.8.1-3ubuntu1_arm64.deb ... 160s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 160s Selecting previously unselected package pkgconf:arm64. 160s Preparing to unpack .../50-pkgconf_1.8.1-3ubuntu1_arm64.deb ... 160s Unpacking pkgconf:arm64 (1.8.1-3ubuntu1) ... 160s Selecting previously unselected package libtirpc-dev:arm64. 160s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 160s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 160s Selecting previously unselected package r-base-dev. 160s Preparing to unpack .../52-r-base-dev_4.4.1-1_all.deb ... 160s Unpacking r-base-dev (4.4.1-1) ... 160s Selecting previously unselected package pkg-r-autopkgtest. 160s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 160s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 160s 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Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 160s Setting up autopkgtest-satdep (0) ... 160s Processing triggers for man-db (2.12.1-3) ... 161s Processing triggers for install-info (7.1.1-1) ... 161s Processing triggers for libc-bin (2.40-1ubuntu3) ... 164s (Reading database ... 87963 files and directories currently installed.) 164s Removing autopkgtest-satdep (0) ... 165s autopkgtest [19:08:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 165s autopkgtest [19:08:05]: test pkg-r-autopkgtest: [----------------------- 165s Test: Try to load the R library pls 165s 165s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 165s Copyright (C) 2024 The R Foundation for Statistical Computing 165s Platform: aarch64-unknown-linux-gnu 165s 165s R is free software and comes with ABSOLUTELY NO WARRANTY. 165s You are welcome to redistribute it under certain conditions. 165s Type 'license()' or 'licence()' for distribution details. 165s 165s R is a collaborative project with many contributors. 165s Type 'contributors()' for more information and 165s 'citation()' on how to cite R or R packages in publications. 165s 165s Type 'demo()' for some demos, 'help()' for on-line help, or 165s 'help.start()' for an HTML browser interface to help. 165s Type 'q()' to quit R. 165s 165s > library('pls') 165s > 165s > 165s 165s Attaching package: ‘pls’ 165s 165s The following object is masked from ‘package:stats’: 165s 165s loadings 165s 165s Other tests are currently unsupported! 165s They will be progressively added. 166s autopkgtest [19:08:06]: test pkg-r-autopkgtest: -----------------------] 166s autopkgtest [19:08:06]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 166s pkg-r-autopkgtest PASS 167s autopkgtest [19:08:07]: @@@@@@@@@@@@@@@@@@@@ summary 167s run-unit-test FAIL non-zero exit status 1 167s pkg-r-autopkgtest PASS 179s nova [W] Skipping flock in bos03-arm64 179s Creating nova instance adt-plucky-arm64-r-cran-pls-20241101-190520-juju-7f2275-prod-proposed-migration-environment-15-f87aca27-9f2b-411b-9721-8f1caaf680a7 from image adt/ubuntu-plucky-arm64-server-20241101.img (UUID 520a937f-514a-4e80-b76b-163a8c247e3e)...