0s autopkgtest [15:44:29]: starting date and time: 2025-03-15 15:44:29+0000 0s autopkgtest [15:44:29]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:44:29]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.a1dv08la/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-pcapp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-1.secgroup --name adt-plucky-arm64-r-cran-pcapp-20250315-154429-juju-7f2275-prod-proposed-migration-environment-2-a6a22344-440f-49b9-b10c-672f5221f4ef --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 175s autopkgtest [15:47:24]: testbed dpkg architecture: arm64 176s autopkgtest [15:47:25]: testbed apt version: 2.9.33 176s autopkgtest [15:47:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 176s autopkgtest [15:47:25]: testbed release detected to be: None 177s autopkgtest [15:47:26]: updating testbed package index (apt update) 178s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 178s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 178s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 178s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 178s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 178s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 178s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 179s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 179s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 179s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 179s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 179s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 179s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 179s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 179s Fetched 1078 kB in 2s (622 kB/s) 180s Reading package lists... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s Calculating upgrade... 182s Calculating upgrade... 183s The following packages will be upgraded: 183s pinentry-curses python3-jinja2 strace 183s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 647 kB of archives. 183s After this operation, 11.3 kB of additional disk space will be used. 183s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 184s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 184s Fetched 647 kB in 1s (584 kB/s) 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 185s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 185s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 185s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 185s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 185s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 185s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 185s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 185s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 185s Setting up strace (6.13+ds-1ubuntu1) ... 185s Processing triggers for man-db (2.13.0-1) ... 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 188s Solving dependencies... 189s The following packages will be REMOVED: 189s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 189s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 189s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 189s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 190s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 190s After this operation, 267 MB disk space will be freed. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 190s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 190s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 190s Removing libpython3.12t64:arm64 (3.12.9-1) ... 190s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 190s Removing libnsl2:arm64 (1.3.0-3build3) ... 190s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 190s Removing libunwind8:arm64 (1.6.2-3.1) ... 190s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 193s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 193s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 193s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 193s /etc/kernel/postrm.d/initramfs-tools: 193s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 193s /etc/kernel/postrm.d/zz-flash-kernel: 193s flash-kernel: Kernel 6.11.0-8-generic has been removed. 193s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 193s /etc/kernel/postrm.d/zz-update-grub: 193s Sourcing file `/etc/default/grub' 193s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 193s Generating grub configuration file ... 194s Found linux image: /boot/vmlinuz-6.14.0-10-generic 194s Found initrd image: /boot/initrd.img-6.14.0-10-generic 194s Warning: os-prober will not be executed to detect other bootable partitions. 194s Systems on them will not be added to the GRUB boot configuration. 194s Check GRUB_DISABLE_OS_PROBER documentation entry. 194s Adding boot menu entry for UEFI Firmware Settings ... 194s done 194s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 194s Processing triggers for libc-bin (2.41-1ubuntu1) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 195s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 195s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 195s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s autopkgtest [15:47:44]: upgrading testbed (apt dist-upgrade and autopurge) 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 196s Starting 2 pkgProblemResolver with broken count: 0 196s Done 197s Entering ResolveByKeep 197s 198s Calculating upgrade... 198s The following packages will be upgraded: 198s libc-bin libc-dev-bin libc6 libc6-dev locales 198s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s Need to get 9530 kB of archives. 198s After this operation, 0 B of additional disk space will be used. 198s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 200s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 204s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 205s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 210s Preconfiguring packages ... 210s Fetched 9530 kB in 12s (818 kB/s) 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 211s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Setting up libc6:arm64 (2.41-1ubuntu2) ... 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 211s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 211s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 211s Setting up libc-bin (2.41-1ubuntu2) ... 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 211s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 211s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 212s Setting up locales (2.41-1ubuntu2) ... 213s Generating locales (this might take a while)... 215s en_US.UTF-8... done 215s Generation complete. 215s Setting up libc-dev-bin (2.41-1ubuntu2) ... 215s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 215s Processing triggers for man-db (2.13.0-1) ... 216s Processing triggers for systemd (257.3-1ubuntu3) ... 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 217s Starting pkgProblemResolver with broken count: 0 217s Starting 2 pkgProblemResolver with broken count: 0 217s Done 218s Solving dependencies... 218s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 219s autopkgtest [15:48:08]: rebooting testbed after setup commands that affected boot 242s autopkgtest [15:48:31]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 245s autopkgtest [15:48:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-pcapp 247s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pcapp 2.0-5-1 (dsc) [2100 B] 247s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pcapp 2.0-5-1 (tar) [201 kB] 247s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pcapp 2.0-5-1 (diff) [3616 B] 247s gpgv: Signature made Mon Sep 2 03:06:11 2024 UTC 247s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 247s gpgv: issuer "plessy@debian.org" 247s gpgv: Can't check signature: No public key 247s dpkg-source: warning: cannot verify inline signature for ./r-cran-pcapp_2.0-5-1.dsc: no acceptable signature found 247s autopkgtest [15:48:36]: testing package r-cran-pcapp version 2.0-5-1 248s autopkgtest [15:48:37]: build not needed 250s autopkgtest [15:48:39]: test run-unit-test: preparing testbed 250s Reading package lists... 250s Building dependency tree... 250s Reading state information... 251s Starting pkgProblemResolver with broken count: 0 251s Starting 2 pkgProblemResolver with broken count: 0 251s Done 252s The following NEW packages will be installed: 252s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 252s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 252s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 252s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 252s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 252s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 252s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-deoptimr 252s r-cran-mvtnorm r-cran-pcapp r-cran-robustbase unzip x11-common xdg-utils zip 252s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 252s Need to get 42.8 MB of archives. 252s After this operation, 85.3 MB of additional disk space will be used. 252s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 253s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 254s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 254s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 254s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 254s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 254s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 255s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 255s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 255s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 255s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 255s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 255s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 255s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 256s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 256s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 256s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 257s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 257s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 257s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 257s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 257s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 260s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 260s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 260s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 260s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 260s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 260s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 260s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 260s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 260s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 260s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 260s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 262s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 262s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 262s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 262s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 262s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 262s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 263s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 263s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 263s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 264s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 264s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 296s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deoptimr all 1.1-3-1-1 [76.6 kB] 296s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB] 297s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pcapp arm64 2.0-5-1 [366 kB] 298s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-robustbase arm64 0.99-4-1-1 [3035 kB] 301s Preconfiguring packages ... 301s Fetched 42.8 MB in 49s (864 kB/s) 301s Selecting previously unselected package fonts-dejavu-mono. 302s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 302s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 302s Unpacking fonts-dejavu-mono (2.37-8) ... 302s Selecting previously unselected package fonts-dejavu-core. 302s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 302s Unpacking fonts-dejavu-core (2.37-8) ... 302s Selecting previously unselected package fontconfig-config. 302s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 302s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 302s Selecting previously unselected package libfontconfig1:arm64. 302s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 302s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 302s Selecting previously unselected package fontconfig. 302s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 302s Unpacking fontconfig (2.15.0-2ubuntu1) ... 302s Selecting previously unselected package libblas3:arm64. 302s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ... 302s Unpacking libblas3:arm64 (3.12.1-2) ... 302s Selecting previously unselected package libpixman-1-0:arm64. 302s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_arm64.deb ... 302s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 302s Selecting previously unselected package libxcb-render0:arm64. 302s Preparing to unpack .../07-libxcb-render0_1.17.0-2_arm64.deb ... 302s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 302s Selecting previously unselected package libxcb-shm0:arm64. 302s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_arm64.deb ... 302s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 302s Selecting previously unselected package libxrender1:arm64. 302s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 302s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 302s Selecting previously unselected package libcairo2:arm64. 302s Preparing to unpack .../10-libcairo2_1.18.2-2_arm64.deb ... 302s Unpacking libcairo2:arm64 (1.18.2-2) ... 302s Selecting previously unselected package libdatrie1:arm64. 302s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_arm64.deb ... 302s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 302s Selecting previously unselected package libdeflate0:arm64. 302s Preparing to unpack .../12-libdeflate0_1.23-1_arm64.deb ... 302s Unpacking libdeflate0:arm64 (1.23-1) ... 302s Selecting previously unselected package libgfortran5:arm64. 302s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 302s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 302s Selecting previously unselected package libgomp1:arm64. 302s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 302s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 303s Selecting previously unselected package libgraphite2-3:arm64. 303s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 303s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 303s Selecting previously unselected package libharfbuzz0b:arm64. 303s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_arm64.deb ... 303s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 303s Selecting previously unselected package x11-common. 303s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ... 303s Unpacking x11-common (1:7.7+23ubuntu3) ... 303s Selecting previously unselected package libice6:arm64. 303s Preparing to unpack .../18-libice6_2%3a1.1.1-1_arm64.deb ... 303s Unpacking libice6:arm64 (2:1.1.1-1) ... 303s Selecting previously unselected package libjpeg-turbo8:arm64. 303s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 303s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 303s Selecting previously unselected package libjpeg8:arm64. 303s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 303s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 303s Selecting previously unselected package liblapack3:arm64. 303s Preparing to unpack .../21-liblapack3_3.12.1-2_arm64.deb ... 303s Unpacking liblapack3:arm64 (3.12.1-2) ... 303s Selecting previously unselected package liblerc4:arm64. 303s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 303s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 303s Selecting previously unselected package libthai-data. 303s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 303s Unpacking libthai-data (0.1.29-2build1) ... 303s Selecting previously unselected package libthai0:arm64. 303s Preparing to unpack .../24-libthai0_0.1.29-2build1_arm64.deb ... 303s Unpacking libthai0:arm64 (0.1.29-2build1) ... 303s Selecting previously unselected package libpango-1.0-0:arm64. 303s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_arm64.deb ... 303s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 303s Selecting previously unselected package libpangoft2-1.0-0:arm64. 303s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 303s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 303s Selecting previously unselected package libpangocairo-1.0-0:arm64. 303s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 303s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 303s Selecting previously unselected package libpaper2:arm64. 303s Preparing to unpack .../28-libpaper2_2.2.5-0.3_arm64.deb ... 303s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 303s Selecting previously unselected package libpaper-utils. 303s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_arm64.deb ... 303s Unpacking libpaper-utils (2.2.5-0.3) ... 303s Selecting previously unselected package libsharpyuv0:arm64. 303s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_arm64.deb ... 303s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 303s Selecting previously unselected package libsm6:arm64. 303s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_arm64.deb ... 303s Unpacking libsm6:arm64 (2:1.2.4-1) ... 303s Selecting previously unselected package libtcl8.6:arm64. 303s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 303s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 303s Selecting previously unselected package libjbig0:arm64. 303s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 303s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 303s Selecting previously unselected package libwebp7:arm64. 303s Preparing to unpack .../34-libwebp7_1.5.0-0.1_arm64.deb ... 303s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 303s Selecting previously unselected package libtiff6:arm64. 303s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 303s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 303s Selecting previously unselected package libxft2:arm64. 303s Preparing to unpack .../36-libxft2_2.3.6-1build1_arm64.deb ... 303s Unpacking libxft2:arm64 (2.3.6-1build1) ... 303s Selecting previously unselected package libxss1:arm64. 303s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_arm64.deb ... 303s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 303s Selecting previously unselected package libtk8.6:arm64. 303s Preparing to unpack .../38-libtk8.6_8.6.16-1_arm64.deb ... 303s Unpacking libtk8.6:arm64 (8.6.16-1) ... 303s Selecting previously unselected package libxt6t64:arm64. 303s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 303s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 303s Selecting previously unselected package zip. 303s Preparing to unpack .../40-zip_3.0-14ubuntu2_arm64.deb ... 303s Unpacking zip (3.0-14ubuntu2) ... 304s Selecting previously unselected package unzip. 304s Preparing to unpack .../41-unzip_6.0-28ubuntu6_arm64.deb ... 304s Unpacking unzip (6.0-28ubuntu6) ... 304s Selecting previously unselected package xdg-utils. 304s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ... 304s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 304s Selecting previously unselected package r-base-core. 304s Preparing to unpack .../43-r-base-core_4.4.3-1_arm64.deb ... 304s Unpacking r-base-core (4.4.3-1) ... 304s Selecting previously unselected package r-cran-deoptimr. 304s Preparing to unpack .../44-r-cran-deoptimr_1.1-3-1-1_all.deb ... 304s Unpacking r-cran-deoptimr (1.1-3-1-1) ... 304s Selecting previously unselected package r-cran-mvtnorm. 304s Preparing to unpack .../45-r-cran-mvtnorm_1.3-3-1_arm64.deb ... 304s Unpacking r-cran-mvtnorm (1.3-3-1) ... 304s Selecting previously unselected package r-cran-pcapp. 304s Preparing to unpack .../46-r-cran-pcapp_2.0-5-1_arm64.deb ... 304s Unpacking r-cran-pcapp (2.0-5-1) ... 304s Selecting previously unselected package r-cran-robustbase. 304s Preparing to unpack .../47-r-cran-robustbase_0.99-4-1-1_arm64.deb ... 304s Unpacking r-cran-robustbase (0.99-4-1-1) ... 304s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 304s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 304s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 304s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 304s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 304s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 304s Setting up libxcb-render0:arm64 (1.17.0-2) ... 304s Setting up unzip (6.0-28ubuntu6) ... 304s Setting up x11-common (1:7.7+23ubuntu3) ... 305s Setting up libdeflate0:arm64 (1.23-1) ... 305s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 305s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 305s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 305s Setting up zip (3.0-14ubuntu2) ... 305s Setting up libblas3:arm64 (3.12.1-2) ... 305s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 305s Setting up fonts-dejavu-mono (2.37-8) ... 305s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 305s Setting up fonts-dejavu-core (2.37-8) ... 305s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 305s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 305s Setting up libwebp7:arm64 (1.5.0-0.1) ... 305s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 305s Setting up libthai-data (0.1.29-2build1) ... 305s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 305s Setting up libpaper2:arm64 (2.2.5-0.3) ... 305s Setting up xdg-utils (1.2.1-2ubuntu1) ... 305s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 305s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 305s Setting up libice6:arm64 (2:1.1.1-1) ... 305s Setting up liblapack3:arm64 (3.12.1-2) ... 305s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 305s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 305s Setting up libpaper-utils (2.2.5-0.3) ... 305s Setting up libthai0:arm64 (0.1.29-2build1) ... 305s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 305s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 305s Setting up libsm6:arm64 (2:1.2.4-1) ... 305s Setting up fontconfig (2.15.0-2ubuntu1) ... 307s Regenerating fonts cache... done. 307s Setting up libxft2:arm64 (2.3.6-1build1) ... 307s Setting up libtk8.6:arm64 (8.6.16-1) ... 307s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 307s Setting up libcairo2:arm64 (1.18.2-2) ... 307s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 307s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 307s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 307s Setting up r-base-core (4.4.3-1) ... 307s Creating config file /etc/R/Renviron with new version 307s Setting up r-cran-deoptimr (1.1-3-1-1) ... 307s Setting up r-cran-mvtnorm (1.3-3-1) ... 307s Setting up r-cran-robustbase (0.99-4-1-1) ... 307s Setting up r-cran-pcapp (2.0-5-1) ... 307s Processing triggers for libc-bin (2.41-1ubuntu2) ... 307s Processing triggers for man-db (2.13.0-1) ... 308s Processing triggers for install-info (7.1.1-1) ... 310s autopkgtest [15:49:39]: test run-unit-test: [----------------------- 310s BEGIN TEST tpcapp.R 310s 310s R version 4.4.3 (2025-02-28) -- "Trophy Case" 310s Copyright (C) 2025 The R Foundation for Statistical Computing 310s Platform: aarch64-unknown-linux-gnu 310s 310s R is free software and comes with ABSOLUTELY NO WARRANTY. 310s You are welcome to redistribute it under certain conditions. 310s Type 'license()' or 'licence()' for distribution details. 310s 310s R is a collaborative project with many contributors. 310s Type 'contributors()' for more information and 310s 'citation()' on how to cite R or R packages in publications. 310s 310s Type 'demo()' for some demos, 'help()' for on-line help, or 310s 'help.start()' for an HTML browser interface to help. 310s Type 'q()' to quit R. 310s 310s > ## this will render the output independent from the version of the package 310s > suppressPackageStartupMessages(library(pcaPP)) 310s > 310s > ## Sparse loadings 310s > set.seed (0) 310s > ##x <- data.Zou() 310s > data(iris) 310s > x <- iris[, 1:4] 310s > 310s > l1median_NM (x)$par 310s [1] 5.931944 2.913282 4.215406 1.364975 310s > l1median_CG (x)$par 310s [1] 5.932216 2.912279 4.215837 1.364750 310s > l1median_BFGS (x)$par 310s [1] 5.932216 2.912279 4.215837 1.364750 310s > l1median_NLM (x)$par 310s [1] 5.932216 2.912279 4.215837 1.364750 310s > l1median_HoCr (x)$par 310s [1] 5.932216 2.912279 4.215837 1.364750 310s > l1median_VaZh (x)$par 310s [1] 5.932216 2.912279 4.215837 1.364750 310s > 310s > # compare with coordinate-wise median: 310s > apply(x,2,median) 310s Sepal.Length Sepal.Width Petal.Length Petal.Width 310s 5.80 3.00 4.35 1.30 310s > 310s > pc <- PCAgrid(x) 310s > pc 310s Call: 310s PCAgrid(x = x) 310s 310s Standard deviations: 310s [1] 2.3555356 0.9095565 310s 310s 4 variables and 150 observations. 310s > summary(pc) 310s Importance of components: 310s [,1] [,2] 310s Standard deviation 2.3555356 0.9095565 310s Proportion of Variance 0.8702457 0.1297543 310s Cumulative Proportion 0.8702457 1.0000000 310s > pc$loadings 310s 310s Loadings: 310s Comp.1 Comp.2 310s Sepal.Length 0.589 -0.618 310s Sepal.Width 0.174 310s Petal.Length 0.598 0.749 310s Petal.Width 0.543 -0.163 310s 310s Comp.1 Comp.2 310s SS loadings 1.00 1.00 310s Proportion Var 0.25 0.25 310s Cumulative Var 0.25 0.50 310s > pc$scores 310s Comp.1 Comp.2 310s [1,] -2.791519460 -1.304428269 310s [2,] -2.921720995 -1.267984502 310s [3,] -3.094390048 -1.184566289 310s [4,] -3.036232432 -0.990326562 310s [5,] -2.847966568 -1.225246155 310s [6,] -2.316930680 -1.227763426 310s [7,] -3.034282033 -1.029294612 310s [8,] -2.793136680 -1.185134557 310s [9,] -3.218791382 -0.976577184 310s [10,] -2.913781498 -1.159347616 310s [11,] -2.550040927 -1.379942552 310s [12,] -2.851201009 -0.986658731 310s [13,] -3.034948391 -1.189945935 310s [14,] -3.508870813 -1.105959455 310s [15,] -2.486269684 -1.799588594 310s [16,] -2.247359234 -1.475864129 310s [17,] -2.556030025 -1.527547488 310s [18,] -2.737211646 -1.320701930 310s [19,] -2.196952220 -1.414201690 310s [20,] -2.670019387 -1.193504288 310s [21,] -2.437908677 -1.282302147 310s [22,] -2.618184048 -1.227195159 310s [23,] -3.322744244 -1.277970595 310s [24,] -2.454216458 -1.163245624 310s [25,] -2.671876500 -0.761820684 310s [26,] -2.743251740 -1.179857376 310s [27,] -2.624746217 -1.142735864 310s [28,] -2.672825041 -1.291247159 310s [29,] -2.735072351 -1.383610383 310s [30,] -2.915065539 -0.959728243 310s [31,] -2.858618431 -1.038910357 310s [32,] -2.448842723 -1.464741501 310s [33,] -2.712298010 -1.170470245 310s [34,] -2.538533811 -1.429567429 310s [35,] -2.859473685 -1.175621278 310s [36,] -2.977406137 -1.444807021 310s [37,] -2.615615966 -1.626433906 310s [38,] -2.961193964 -1.147207588 310s [39,] -3.276093744 -1.034105991 310s [40,] -2.734217097 -1.246899462 310s [41,] -2.855906065 -1.333883041 310s [42,] -3.180173667 -1.234065019 310s [43,] -3.271148796 -0.999271573 310s [44,] -2.513658115 -1.157865978 310s [45,] -2.376612229 -0.909993888 310s [46,] -2.926332764 -1.222493258 310s [47,] -2.664552365 -1.102284611 310s [48,] -3.093534795 -1.047855368 310s [49,] -2.608960510 -1.318177647 310s [50,] -2.855383990 -1.277497781 310s [51,] 0.944798547 -0.252278522 310s [52,] 0.526039193 -0.047854782 310s [53,] 1.057263977 -0.074312455 310s [54,] -0.433979126 0.009091732 310s [55,] 0.634843715 -0.104342507 310s [56,] -0.004903408 0.347378043 310s [57,] 0.643449570 0.164945702 310s [58,] -1.366371442 -0.078702751 310s [59,] 0.587620145 -0.116142881 310s [60,] -0.606315000 0.172835607 310s [61,] -1.197792083 -0.060244461 310s [62,] 0.047171823 0.001297281 310s [63,] -0.304777128 -0.268329019 310s [64,] 0.407104882 0.251354000 310s [65,] -0.599324044 -0.247953982 310s [66,] 0.586242816 -0.309239061 310s [67,] 0.049737584 0.411430044 310s [68,] -0.350479086 0.017232851 310s [69,] 0.383475287 -0.098497059 310s [70,] -0.538505058 -0.060237448 310s [71,] 0.573689229 0.436986807 310s [72,] -0.068099260 -0.274411656 310s [73,] 0.688911637 0.191773724 310s [74,] 0.296016781 0.266484114 310s [75,] 0.290456471 -0.217451116 310s [76,] 0.524850760 -0.264891364 310s [77,] 0.876844322 -0.123471530 310s [78,] 1.105342801 0.074198839 310s [79,] 0.282943440 0.146953213 310s [80,] -0.770520160 -0.388095545 310s [81,] -0.659671951 -0.090835767 310s [82,] -0.773754601 -0.149508121 310s [83,] -0.361413131 -0.165206503 310s [84,] 0.690955323 0.545521228 310s [85,] -0.068101581 0.534959854 310s [86,] 0.349613624 0.217765596 310s [87,] 0.819875139 -0.100674676 310s [88,] 0.276476880 -0.185243448 310s [89,] -0.297977388 0.144193304 310s [90,] -0.429034177 0.043926150 310s [91,] -0.241770172 0.377401082 310s [92,] 0.349802520 0.193825194 310s [93,] -0.304110769 -0.107677696 310s [94,] -1.309924333 -0.157884865 310s [95,] -0.245619974 0.166887693 310s [96,] -0.233590783 0.173648076 310s [97,] -0.181755443 0.139957206 310s [98,] 0.172617306 -0.093921306 310s [99,] -1.371076498 -0.425927061 310s [100,] -0.244002754 0.047593981 310s [101,] 1.909292764 0.992780951 310s [102,] 0.736039599 0.620230054 310s [103,] 2.096225912 0.436558712 310s [104,] 1.280148828 0.737243684 310s [105,] 1.737241394 0.715928467 310s [106,] 2.809247679 0.652356294 310s [107,] -0.266446237 0.724151014 310s [108,] 2.287768508 0.644216739 310s [109,] 1.625486934 0.570407258 310s [110,] 2.506761266 0.564094445 310s [111,] 1.215146861 0.258688099 310s [112,] 1.209106767 0.399532653 310s [113,] 1.680367819 0.322069366 310s [114,] 0.666708045 0.555940865 310s [115,] 1.010051141 0.556278956 310s [116,] 1.438700391 0.421524051 310s [117,] 1.340685631 0.556185066 310s [118,] 3.002029704 0.788601413 310s [119,] 3.146217501 0.713213277 310s [120,] 0.564510303 0.399762829 310s [121,] 1.972397649 0.412483586 310s [122,] 0.555431049 0.595011381 310s [123,] 2.868689336 0.646976648 310s [124,] 0.856780025 0.177787157 310s [125,] 1.748415331 0.585977929 310s [126,] 2.056941838 0.533395224 310s [127,] 0.740558081 0.182023256 310s [128,] 0.746358283 0.353568595 310s [129,] 1.499519377 0.609240585 310s [130,] 1.823831591 0.381216098 310s [131,] 2.278973757 0.398868932 310s [132,] 2.831928733 0.472780879 310s [133,] 1.553827190 0.592966924 310s [134,] 0.815878732 0.393917382 310s [135,] 0.937660987 0.873616514 310s [136,] 2.677908707 0.183313988 310s [137,] 1.618358079 0.726687759 310s [138,] 1.284238522 0.635367181 310s [139,] 0.627663864 0.340387484 310s [140,] 1.681985039 0.202775654 310s [141,] 1.846618987 0.427376511 310s [142,] 1.611276157 -0.054609716 310s [143,] 0.736039599 0.620230054 310s [144,] 2.033027739 0.624140523 310s [145,] 1.965646585 0.520883283 310s [146,] 1.550739354 0.126448902 310s [147,] 0.965917727 0.201625094 310s [148,] 1.269976749 0.298799697 310s [149,] 1.385581011 0.654834295 310s [150,] 0.748068790 0.626990436 310s > 311s autopkgtest [15:49:40]: test run-unit-test: -----------------------] 311s run-unit-test PASS 311s autopkgtest [15:49:40]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 312s autopkgtest [15:49:41]: test pkg-r-autopkgtest: preparing testbed 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 313s Starting pkgProblemResolver with broken count: 0 313s Starting 2 pkgProblemResolver with broken count: 0 313s Done 313s The following NEW packages will be installed: 313s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 313s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 313s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 313s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 313s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 313s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 313s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 313s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 313s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 314s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 314s zlib1g-dev 314s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 314s Need to get 92.7 MB of archives. 314s After this operation, 334 MB of additional disk space will be used. 314s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 315s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 315s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 327s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 327s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 327s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 327s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 327s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 327s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 330s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 332s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 335s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 337s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 338s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 341s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 367s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 368s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 368s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 368s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 370s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 383s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 383s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 383s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 383s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 383s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 383s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 384s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 397s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 397s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 397s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 397s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 397s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 397s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 398s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 398s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 411s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 411s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 411s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 411s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 416s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 417s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 417s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 417s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 417s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 418s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 418s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 419s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 419s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 419s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 419s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 419s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 419s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 420s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 420s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 420s Fetched 92.7 MB in 1min 46s (873 kB/s) 420s Selecting previously unselected package libisl23:arm64. 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 84018 files and directories currently installed.) 420s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 420s Unpacking libisl23:arm64 (0.27-1) ... 420s Selecting previously unselected package libmpc3:arm64. 420s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 420s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 420s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 420s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 420s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 420s Selecting previously unselected package cpp-14. 420s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 420s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 420s Selecting previously unselected package cpp-aarch64-linux-gnu. 420s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 420s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 420s Selecting previously unselected package cpp. 421s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 421s Unpacking cpp (4:14.2.0-1ubuntu1) ... 421s Selecting previously unselected package libcc1-0:arm64. 421s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package libitm1:arm64. 421s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package libasan8:arm64. 421s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package liblsan0:arm64. 421s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package libtsan2:arm64. 421s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package libubsan1:arm64. 421s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package libhwasan0:arm64. 421s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 421s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 421s Selecting previously unselected package libgcc-14-dev:arm64. 421s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 421s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 421s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 421s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 421s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 422s Selecting previously unselected package gcc-14. 422s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 422s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 422s Selecting previously unselected package gcc-aarch64-linux-gnu. 422s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 422s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 422s Selecting previously unselected package gcc. 422s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 422s Unpacking gcc (4:14.2.0-1ubuntu1) ... 422s Selecting previously unselected package libstdc++-14-dev:arm64. 422s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 422s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 422s Selecting previously unselected package g++-14-aarch64-linux-gnu. 422s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 422s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 422s Selecting previously unselected package g++-14. 422s Preparing to unpack .../20-g++-14_14.2.0-17ubuntu3_arm64.deb ... 422s Unpacking g++-14 (14.2.0-17ubuntu3) ... 422s Selecting previously unselected package g++-aarch64-linux-gnu. 422s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 422s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 422s Selecting previously unselected package g++. 422s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 422s Unpacking g++ (4:14.2.0-1ubuntu1) ... 422s Selecting previously unselected package build-essential. 422s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 422s Unpacking build-essential (12.10ubuntu1) ... 422s Selecting previously unselected package dctrl-tools. 422s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 422s Unpacking dctrl-tools (2.24-3build3) ... 422s Selecting previously unselected package libgfortran-14-dev:arm64. 422s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 422s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 422s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 422s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 422s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 423s Selecting previously unselected package gfortran-14. 423s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 423s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 423s Selecting previously unselected package gfortran-aarch64-linux-gnu. 423s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 423s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 423s Selecting previously unselected package gfortran. 423s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 423s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 423s Selecting previously unselected package icu-devtools. 423s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 423s Unpacking icu-devtools (76.1-1ubuntu2) ... 423s Selecting previously unselected package libblas-dev:arm64. 423s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 423s Unpacking libblas-dev:arm64 (3.12.1-2) ... 423s Selecting previously unselected package libbz2-dev:arm64. 423s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 423s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 423s Selecting previously unselected package libdeflate-dev:arm64. 423s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 423s Unpacking libdeflate-dev:arm64 (1.23-1) ... 423s Selecting previously unselected package libicu-dev:arm64. 423s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 423s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 423s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 423s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 423s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 423s Selecting previously unselected package libjpeg8-dev:arm64. 423s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 423s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 423s Selecting previously unselected package libjpeg-dev:arm64. 423s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 423s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 423s Selecting previously unselected package liblapack-dev:arm64. 423s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 423s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 424s Selecting previously unselected package libncurses-dev:arm64. 424s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 424s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 424s Selecting previously unselected package libpcre2-16-0:arm64. 424s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 424s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 424s Selecting previously unselected package libpcre2-32-0:arm64. 424s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 424s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 424s Selecting previously unselected package libpcre2-posix3:arm64. 424s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 424s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 424s Selecting previously unselected package libpcre2-dev:arm64. 424s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 424s 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libreadline-dev:arm64 (8.2-6) ... 424s Setting up libpcre2-16-0:arm64 (10.45-1) ... 424s Setting up libpcre2-32-0:arm64 (10.45-1) ... 424s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 424s Setting up libpkgconf3:arm64 (1.8.1-4) ... 424s Setting up libmpc3:arm64 (1.3.1-1build2) ... 424s Setting up icu-devtools (76.1-1ubuntu2) ... 424s Setting up pkgconf-bin (1.8.1-4) ... 424s Setting up liblzma-dev:arm64 (5.6.4-1) ... 424s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 424s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 424s Setting up libpcre2-posix3:arm64 (10.45-1) ... 424s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 424s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 424s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 424s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 424s Setting up libisl23:arm64 (0.27-1) ... 424s Setting up libdeflate-dev:arm64 (1.23-1) ... 424s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 424s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 424s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 424s Setting up libblas-dev:arm64 (3.12.1-2) ... 424s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 424s Setting up dctrl-tools (2.24-3build3) ... 424s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 424s Setting up libbz2-dev:arm64 (1.0.8-6) ... 424s Setting up libpcre2-dev:arm64 (10.45-1) ... 424s Setting up libpng-dev:arm64 (1.6.47-1) ... 424s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 424s Setting up pkgconf:arm64 (1.8.1-4) ... 424s Setting up liblapack-dev:arm64 (3.12.1-2) ... 424s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 424s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 424s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 424s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 424s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 424s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 424s Setting up cpp-14 (14.2.0-17ubuntu3) ... 424s Setting up cpp (4:14.2.0-1ubuntu1) ... 424s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 424s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 424s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 424s Setting up gcc-14 (14.2.0-17ubuntu3) ... 424s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 424s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 424s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 424s Setting up g++-14 (14.2.0-17ubuntu3) ... 424s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 424s Setting up gcc (4:14.2.0-1ubuntu1) ... 424s Setting up g++ (4:14.2.0-1ubuntu1) ... 424s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 424s Setting up build-essential (12.10ubuntu1) ... 424s Setting up gfortran (4:14.2.0-1ubuntu1) ... 424s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 424s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 424s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 424s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 424s Setting up r-base-dev (4.4.3-1) ... 424s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 424s Processing triggers for libc-bin (2.41-1ubuntu2) ... 424s Processing triggers for man-db (2.13.0-1) ... 425s Processing triggers for install-info (7.1.1-1) ... 426s autopkgtest [15:51:35]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 426s autopkgtest [15:51:35]: test pkg-r-autopkgtest: [----------------------- 427s Test: Try to load the R library pcaPP 427s 427s R version 4.4.3 (2025-02-28) -- "Trophy Case" 427s Copyright (C) 2025 The R Foundation for Statistical Computing 427s Platform: aarch64-unknown-linux-gnu 427s 427s R is free software and comes with ABSOLUTELY NO WARRANTY. 427s You are welcome to redistribute it under certain conditions. 427s Type 'license()' or 'licence()' for distribution details. 427s 427s R is a collaborative project with many contributors. 427s Type 'contributors()' for more information and 427s 'citation()' on how to cite R or R packages in publications. 427s 427s Type 'demo()' for some demos, 'help()' for on-line help, or 427s 'help.start()' for an HTML browser interface to help. 427s Type 'q()' to quit R. 427s 427s > library('pcaPP') 427s > 427s > 427s Other tests are currently unsupported! 427s They will be progressively added. 427s autopkgtest [15:51:36]: test pkg-r-autopkgtest: -----------------------] 428s autopkgtest [15:51:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 428s pkg-r-autopkgtest PASS 428s autopkgtest [15:51:37]: @@@@@@@@@@@@@@@@@@@@ summary 428s run-unit-test PASS 428s pkg-r-autopkgtest PASS 446s nova [W] Using flock in prodstack6-arm64 446s Creating nova instance adt-plucky-arm64-r-cran-pcapp-20250315-154429-juju-7f2275-prod-proposed-migration-environment-2-a6a22344-440f-49b9-b10c-672f5221f4ef from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 446s nova [W] Timed out waiting for 9ae98595-26b1-4aa5-9b97-0f03461ddd37 to get deleted.