0s autopkgtest [18:28:33]: starting date and time: 2025-02-03 18:28:33+0000
  0s autopkgtest [18:28:33]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [18:28:33]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p2i8fhmy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-testthat --apt-upgrade r-cran-patrick --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-testthat/3.2.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-2.secgroup --name adt-plucky-arm64-r-cran-patrick-20250203-182832-juju-7f2275-prod-proposed-migration-environment-15-2b0e4f41-0724-44d0-aa45-c2da76d18d54 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 92s autopkgtest [18:30:05]: testbed dpkg architecture: arm64
 93s autopkgtest [18:30:06]: testbed apt version: 2.9.18
 93s autopkgtest [18:30:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 93s autopkgtest [18:30:06]: testbed release detected to be: None
 95s autopkgtest [18:30:08]: updating testbed package index (apt update)
 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 95s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 95s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 95s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 96s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB]
 96s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [884 kB]
 98s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 98s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB]
 98s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [829 kB]
101s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4536 B]
101s Fetched 2031 kB in 6s (333 kB/s)
102s Reading package lists...
102s + lsb_release --codename --short
102s + RELEASE=plucky
102s + cat
102s + [ plucky != trusty ]
102s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
102s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s Calculating upgrade...
104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
104s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
104s + /usr/lib/apt/apt-helper analyze-pattern ?true
104s + + sed s/\./\\./g
104s uname -r
104s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.*
104s + apt list ?obsolete
104s + tail -n+2
104s + cut -d/ -f1
104s + grep -v ^linux-.*6\.12\.0-12-generic.*
104s + true
104s + obsolete_pkgs=
104s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s + grep -q trusty /etc/lsb-release
105s + [ ! -d /usr/share/doc/unattended-upgrades ]
105s + [ ! -d /usr/share/doc/lxd ]
105s + [ ! -d /usr/share/doc/lxd-client ]
105s + [ ! -d /usr/share/doc/snapd ]
105s + type iptables
105s + cat
105s + chmod 755 /etc/rc.local
105s + . /etc/rc.local
105s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
105s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
105s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
105s + uname -m
105s + [ aarch64 = ppc64le ]
105s + [ -d /run/systemd/system ]
105s + systemd-detect-virt --quiet --vm
105s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
105s + cat
105s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
105s + echo COMPRESS=lz4
105s autopkgtest [18:30:18]: upgrading testbed (apt dist-upgrade and autopurge)
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
106s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
106s Starting 2 pkgProblemResolver with broken count: 0
106s Done
107s Entering ResolveByKeep
107s 
107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s Starting pkgProblemResolver with broken count: 0
108s Starting 2 pkgProblemResolver with broken count: 0
108s Done
109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
114s autopkgtest [18:30:27]: testbed running kernel: Linux 6.12.0-12-generic #12-Ubuntu SMP PREEMPT_DYNAMIC Thu Jan 23 07:24:57 UTC 2025
114s autopkgtest [18:30:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-patrick
116s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-patrick 0.2.0-2 (dsc) [2134 B]
116s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-patrick 0.2.0-2 (tar) [7609 B]
116s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-patrick 0.2.0-2 (diff) [2020 B]
116s gpgv: Signature made Fri Dec 22 08:04:31 2023 UTC
116s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
116s gpgv:                issuer "tille@debian.org"
116s gpgv: Can't check signature: No public key
116s dpkg-source: warning: cannot verify inline signature for ./r-cran-patrick_0.2.0-2.dsc: no acceptable signature found
116s autopkgtest [18:30:29]: testing package r-cran-patrick version 0.2.0-2
117s autopkgtest [18:30:30]: build not needed
122s autopkgtest [18:30:35]: test run-unit-test: preparing testbed
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s Starting pkgProblemResolver with broken count: 0
123s Starting 2 pkgProblemResolver with broken count: 0
123s Done
125s The following NEW packages will be installed:
125s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
125s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
125s   libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
125s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
125s   libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
125s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
125s   libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-brio r-cran-callr
125s   r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
125s   r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-fs r-cran-generics
125s   r-cran-glue r-cran-jsonlite r-cran-lifecycle r-cran-magrittr r-cran-patrick
125s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgload r-cran-praise
125s   r-cran-processx r-cran-ps r-cran-purrr r-cran-r6 r-cran-rlang
125s   r-cran-rprojroot r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8
125s   r-cran-vctrs r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip
125s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded.
125s Need to get 53.7 MB of archives.
125s After this operation, 106 MB of additional disk space will be used.
125s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
127s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
130s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
130s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
131s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
131s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB]
131s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
132s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
132s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
132s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
132s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
134s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
134s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
134s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-13ubuntu1 [437 kB]
136s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-13ubuntu1 [145 kB]
136s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
136s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
138s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
138s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
138s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
139s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
139s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB]
154s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
155s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
155s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
155s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
156s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
156s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
156s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
156s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
157s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
157s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
157s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
162s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
162s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
163s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
163s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
164s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
164s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
167s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
168s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
169s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
170s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
170s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
335s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
336s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.8.1-1 [395 kB]
338s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
338s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.5-1 [354 kB]
339s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
342s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.3-1 [1347 kB]
354s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
356s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
359s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
366s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
367s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB]
367s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
368s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
378s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
379s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
379s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
380s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
385s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
387s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
391s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
392s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
395s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
396s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB]
397s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB]
405s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
405s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
407s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [445 kB]
409s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB]
413s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
415s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
415s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
417s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
417s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-1 [150 kB]
418s Get:78 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
427s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-patrick all 0.2.0-2 [22.8 kB]
428s Preconfiguring packages ...
428s Fetched 53.7 MB in 5min 3s (177 kB/s)
428s Selecting previously unselected package fonts-dejavu-mono.
428s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 45%
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116576 files and directories currently installed.)
428s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
428s Unpacking fonts-dejavu-mono (2.37-8) ...
428s Selecting previously unselected package fonts-dejavu-core.
428s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
428s Unpacking fonts-dejavu-core (2.37-8) ...
428s Selecting previously unselected package fontconfig-config.
428s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
428s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
428s Selecting previously unselected package libfontconfig1:arm64.
428s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
428s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
428s Selecting previously unselected package fontconfig.
428s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ...
428s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
429s Selecting previously unselected package libblas3:arm64.
429s Preparing to unpack .../05-libblas3_3.12.0-4_arm64.deb ...
429s Unpacking libblas3:arm64 (3.12.0-4) ...
429s Selecting previously unselected package libpixman-1-0:arm64.
429s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_arm64.deb ...
429s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
429s Selecting previously unselected package libxcb-render0:arm64.
429s Preparing to unpack .../07-libxcb-render0_1.17.0-2_arm64.deb ...
429s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
429s Selecting previously unselected package libxcb-shm0:arm64.
429s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_arm64.deb ...
429s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
429s Selecting previously unselected package libxrender1:arm64.
429s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
429s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
429s Selecting previously unselected package libcairo2:arm64.
429s Preparing to unpack .../10-libcairo2_1.18.2-2_arm64.deb ...
429s Unpacking libcairo2:arm64 (1.18.2-2) ...
429s Selecting previously unselected package libdatrie1:arm64.
429s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_arm64.deb ...
429s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
429s Selecting previously unselected package libdeflate0:arm64.
429s Preparing to unpack .../12-libdeflate0_1.23-1_arm64.deb ...
429s Unpacking libdeflate0:arm64 (1.23-1) ...
429s Selecting previously unselected package libgfortran5:arm64.
429s Preparing to unpack .../13-libgfortran5_14.2.0-13ubuntu1_arm64.deb ...
429s Unpacking libgfortran5:arm64 (14.2.0-13ubuntu1) ...
429s Selecting previously unselected package libgomp1:arm64.
429s Preparing to unpack .../14-libgomp1_14.2.0-13ubuntu1_arm64.deb ...
429s Unpacking libgomp1:arm64 (14.2.0-13ubuntu1) ...
429s Selecting previously unselected package libgraphite2-3:arm64.
429s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
429s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
429s Selecting previously unselected package libharfbuzz0b:arm64.
429s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_arm64.deb ...
429s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
429s Selecting previously unselected package x11-common.
429s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ...
429s Unpacking x11-common (1:7.7+23ubuntu3) ...
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433s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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433s Setting up liblapack3:arm64 (3.12.0-4) ...
433s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
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435s Regenerating fonts cache... done.
435s Setting up libxft2:arm64 (2.3.6-1build1) ...
435s Setting up libtk8.6:arm64 (8.6.16-1) ...
435s Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
435s Setting up libcairo2:arm64 (1.18.2-2) ...
435s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
435s Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
436s Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
436s Setting up r-base-core (4.4.2-1build1) ...
436s Creating config file /etc/R/Renviron with new version
436s Setting up r-cran-crayon (1.5.3-1) ...
436s Setting up r-cran-ps (1.8.1-1) ...
436s Setting up r-cran-r6 (2.5.1-1) ...
436s Setting up r-cran-magrittr (2.0.3-1) ...
436s Setting up r-cran-fs (1.6.5+dfsg-1) ...
436s Setting up r-cran-brio (1.1.5-1) ...
436s Setting up r-cran-diffobj (0.3.5-1) ...
436s Setting up r-cran-rlang (1.1.5-1) ...
436s Setting up r-cran-withr (3.0.2+dfsg-1) ...
436s Setting up r-cran-processx (3.8.5-1) ...
436s Setting up r-cran-praise (1.0.0-4build1) ...
436s Setting up r-cran-generics (0.1.3-1) ...
436s Setting up r-cran-digest (0.6.37-1) ...
436s Setting up r-cran-evaluate (1.0.3-1) ...
436s Setting up r-cran-fansi (1.0.5-1) ...
436s Setting up r-cran-glue (1.8.0-1) ...
436s Setting up r-cran-cli (3.6.3-1) ...
436s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
436s Setting up r-cran-rprojroot (2.0.4-2) ...
436s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
436s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
436s Setting up r-cran-utf8 (1.2.4-1) ...
436s Setting up r-cran-waldo (0.6.1-1) ...
436s Setting up r-cran-vctrs (0.6.5-1) ...
436s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
436s Setting up r-cran-callr (3.7.6-1) ...
436s Setting up r-cran-desc (1.4.3-1) ...
436s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
436s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
436s Setting up r-cran-purrr (1.0.2-1) ...
436s Setting up r-cran-pkgbuild (1.4.6-1) ...
436s Setting up r-cran-dplyr (1.1.4-4) ...
436s Setting up r-cran-pkgload (1.4.0-1) ...
436s Setting up r-cran-testthat (3.2.3-1) ...
436s Setting up r-cran-patrick (0.2.0-2) ...
436s Processing triggers for libc-bin (2.40-4ubuntu1) ...
436s Processing triggers for man-db (2.13.0-1) ...
437s Processing triggers for install-info (7.1.1-1) ...
438s autopkgtest [18:35:51]: test run-unit-test: [-----------------------
439s BEGIN TEST testthat.R
439s 
439s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
439s Copyright (C) 2024 The R Foundation for Statistical Computing
439s Platform: aarch64-unknown-linux-gnu
439s 
439s R is free software and comes with ABSOLUTELY NO WARRANTY.
439s You are welcome to redistribute it under certain conditions.
439s Type 'license()' or 'licence()' for distribution details.
439s 
439s R is a collaborative project with many contributors.
439s Type 'contributors()' for more information and
439s 'citation()' on how to cite R or R packages in publications.
439s 
439s Type 'demo()' for some demos, 'help()' for on-line help, or
439s 'help.start()' for an HTML browser interface to help.
439s Type 'q()' to quit R.
439s 
439s > # Copyright 2018 Google LLC
439s > #
439s > # Licensed under the Apache License, Version 2.0 (the "License");
439s > # you may not use this file except in compliance with the License.
439s > # You may obtain a copy of the License at
439s > #
439s > #     http://www.apache.org/licenses/LICENSE-2.0
439s > #
439s > # Unless required by applicable law or agreed to in writing, software
439s > # distributed under the License is distributed on an "AS IS" BASIS,
439s > # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
439s > # See the License for the specific language governing permissions and
439s > # limitations under the License.
439s > 
439s > library(patrick)
439s > library(testthat)
439s > 
439s > test_check("patrick")
440s [ FAIL 0 | WARN 1 | SKIP 0 | PASS 19 ]
440s 
440s [ FAIL 0 | WARN 1 | SKIP 0 | PASS 19 ]
440s > 
440s autopkgtest [18:35:53]: test run-unit-test: -----------------------]
442s autopkgtest [18:35:55]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
442s run-unit-test        PASS
443s autopkgtest [18:35:56]: test pkg-r-autopkgtest: preparing testbed
443s Reading package lists...
443s Building dependency tree...
443s Reading state information...
444s Starting pkgProblemResolver with broken count: 0
444s Starting 2 pkgProblemResolver with broken count: 0
444s Done
444s The following NEW packages will be installed:
444s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
444s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
444s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
444s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
444s   libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
444s   libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
444s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
444s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
444s   libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
444s   libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev
444s   zlib1g-dev
445s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded.
445s Need to get 92.4 MB of archives.
445s After this operation, 333 MB of additional disk space will be used.
445s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
450s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
450s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [10.6 MB]
531s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-13ubuntu1 [1030 B]
531s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
531s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
531s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-13ubuntu1 [49.6 kB]
531s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-13ubuntu1 [27.8 kB]
531s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-13ubuntu1 [2893 kB]
551s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-13ubuntu1 [1283 kB]
560s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-13ubuntu1 [2686 kB]
580s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-13ubuntu1 [1152 kB]
588s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-13ubuntu1 [1598 kB]
599s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-13ubuntu1 [2596 kB]
617s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [20.9 MB]
718s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-13ubuntu1 [523 kB]
721s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
721s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
721s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-13ubuntu1 [2502 kB]
732s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [12.1 MB]
818s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-13ubuntu1 [21.1 kB]
818s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
818s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
818s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
818s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
820s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-13ubuntu1 [498 kB]
824s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [11.4 MB]
889s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-13ubuntu1 [13.2 kB]
889s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B]
890s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B]
890s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
891s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-4 [120 kB]
891s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
891s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
892s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
969s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
970s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
970s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
970s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-4 [4419 kB]
997s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB]
998s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
999s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB]
1000s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B]
1000s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB]
1005s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
1005s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
1010s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-3 [270 kB]
1011s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
1012s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.3-1 [180 kB]
1014s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
1014s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
1015s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
1017s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.2-1build1 [4342 B]
1017s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1017s Fetched 92.4 MB in 9min 32s (161 kB/s)
1017s Selecting previously unselected package libisl23:arm64.
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(Reading database ... 122723 files and directories currently installed.)
1017s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
1017s Unpacking libisl23:arm64 (0.27-1) ...
1017s Selecting previously unselected package libmpc3:arm64.
1017s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
1017s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
1018s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
1018s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package cpp-14.
1018s Preparing to unpack .../03-cpp-14_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking cpp-14 (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package cpp-aarch64-linux-gnu.
1018s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1018s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1018s Selecting previously unselected package cpp.
1018s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
1018s Unpacking cpp (4:14.1.0-2ubuntu1) ...
1018s Selecting previously unselected package libcc1-0:arm64.
1018s Preparing to unpack .../06-libcc1-0_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking libcc1-0:arm64 (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package libitm1:arm64.
1018s Preparing to unpack .../07-libitm1_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking libitm1:arm64 (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package libasan8:arm64.
1018s Preparing to unpack .../08-libasan8_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking libasan8:arm64 (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package liblsan0:arm64.
1018s Preparing to unpack .../09-liblsan0_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking liblsan0:arm64 (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package libtsan2:arm64.
1018s Preparing to unpack .../10-libtsan2_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking libtsan2:arm64 (14.2.0-13ubuntu1) ...
1018s Selecting previously unselected package libubsan1:arm64.
1018s Preparing to unpack .../11-libubsan1_14.2.0-13ubuntu1_arm64.deb ...
1018s Unpacking libubsan1:arm64 (14.2.0-13ubuntu1) ...
1019s Selecting previously unselected package libhwasan0:arm64.
1019s Preparing to unpack .../12-libhwasan0_14.2.0-13ubuntu1_arm64.deb ...
1019s Unpacking libhwasan0:arm64 (14.2.0-13ubuntu1) ...
1019s Selecting previously unselected package libgcc-14-dev:arm64.
1019s Preparing to unpack .../13-libgcc-14-dev_14.2.0-13ubuntu1_arm64.deb ...
1019s Unpacking libgcc-14-dev:arm64 (14.2.0-13ubuntu1) ...
1019s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
1019s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1019s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1019s Selecting previously unselected package gcc-14.
1019s Preparing to unpack .../15-gcc-14_14.2.0-13ubuntu1_arm64.deb ...
1019s Unpacking gcc-14 (14.2.0-13ubuntu1) ...
1019s Selecting previously unselected package gcc-aarch64-linux-gnu.
1019s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1019s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1019s Selecting previously unselected package gcc.
1019s Preparing to unpack .../17-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ...
1019s Unpacking gcc (4:14.1.0-2ubuntu1) ...
1020s Selecting previously unselected package libstdc++-14-dev:arm64.
1020s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-13ubuntu1_arm64.deb ...
1020s Unpacking libstdc++-14-dev:arm64 (14.2.0-13ubuntu1) ...
1020s Selecting previously unselected package g++-14-aarch64-linux-gnu.
1020s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1020s Unpacking g++-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1020s Selecting previously unselected package g++-14.
1020s Preparing to unpack .../20-g++-14_14.2.0-13ubuntu1_arm64.deb ...
1020s Unpacking g++-14 (14.2.0-13ubuntu1) ...
1020s Selecting previously unselected package g++-aarch64-linux-gnu.
1020s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1020s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1020s Selecting previously unselected package g++.
1020s Preparing to unpack .../22-g++_4%3a14.1.0-2ubuntu1_arm64.deb ...
1020s Unpacking g++ (4:14.1.0-2ubuntu1) ...
1020s Selecting previously unselected package build-essential.
1020s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ...
1020s Unpacking build-essential (12.10ubuntu1) ...
1020s Selecting previously unselected package dctrl-tools.
1020s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ...
1020s Unpacking dctrl-tools (2.24-3build3) ...
1020s Selecting previously unselected package libgfortran-14-dev:arm64.
1020s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-13ubuntu1_arm64.deb ...
1020s Unpacking libgfortran-14-dev:arm64 (14.2.0-13ubuntu1) ...
1020s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
1021s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1021s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1021s Selecting previously unselected package gfortran-14.
1021s Preparing to unpack .../27-gfortran-14_14.2.0-13ubuntu1_arm64.deb ...
1021s Unpacking gfortran-14 (14.2.0-13ubuntu1) ...
1021s Selecting previously unselected package gfortran-aarch64-linux-gnu.
1021s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1021s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1021s Selecting previously unselected package gfortran.
1021s Preparing to unpack .../29-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ...
1021s Unpacking gfortran (4:14.1.0-2ubuntu1) ...
1021s Selecting previously unselected package icu-devtools.
1021s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ...
1021s Unpacking icu-devtools (76.1-1ubuntu2) ...
1021s Selecting previously unselected package libblas-dev:arm64.
1021s Preparing to unpack .../31-libblas-dev_3.12.0-4_arm64.deb ...
1021s Unpacking libblas-dev:arm64 (3.12.0-4) ...
1021s Selecting previously unselected package libbz2-dev:arm64.
1021s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ...
1021s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
1021s Selecting previously unselected package libdeflate-dev:arm64.
1021s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ...
1021s Unpacking libdeflate-dev:arm64 (1.23-1) ...
1021s Selecting previously unselected package libicu-dev:arm64.
1021s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ...
1021s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
1022s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
1022s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
1022s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
1022s Selecting previously unselected package libjpeg8-dev:arm64.
1022s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
1022s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
1022s Selecting previously unselected package libjpeg-dev:arm64.
1022s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
1022s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
1022s Selecting previously unselected package liblapack-dev:arm64.
1022s Preparing to unpack .../38-liblapack-dev_3.12.0-4_arm64.deb ...
1022s Unpacking liblapack-dev:arm64 (3.12.0-4) ...
1022s Selecting previously unselected package libncurses-dev:arm64.
1022s Preparing to unpack .../39-libncurses-dev_6.5-2_arm64.deb ...
1022s Unpacking libncurses-dev:arm64 (6.5-2) ...
1022s Selecting previously unselected package libpcre2-16-0:arm64.
1022s Preparing to unpack .../40-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ...
1022s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
1022s Selecting previously unselected package libpcre2-32-0:arm64.
1022s Preparing to unpack .../41-libpcre2-32-0_10.42-4ubuntu3_arm64.deb ...
1022s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
1022s Selecting previously unselected package libpcre2-posix3:arm64.
1022s Preparing to unpack .../42-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ...
1022s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
1022s Selecting previously unselected package libpcre2-dev:arm64.
1022s Preparing to unpack .../43-libpcre2-dev_10.42-4ubuntu3_arm64.deb ...
1022s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ...
1022s Selecting previously unselected package libpkgconf3:arm64.
1022s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ...
1022s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
1022s Selecting previously unselected package zlib1g-dev:arm64.
1022s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
1022s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1022s Selecting previously unselected package libpng-dev:arm64.
1022s Preparing to unpack .../46-libpng-dev_1.6.44-3_arm64.deb ...
1022s Unpacking libpng-dev:arm64 (1.6.44-3) ...
1022s Selecting previously unselected package libreadline-dev:arm64.
1022s Preparing to unpack .../47-libreadline-dev_8.2-6_arm64.deb ...
1022s Unpacking libreadline-dev:arm64 (8.2-6) ...
1023s Selecting previously unselected package liblzma-dev:arm64.
1023s Preparing to unpack .../48-liblzma-dev_5.6.3-1_arm64.deb ...
1023s Unpacking liblzma-dev:arm64 (5.6.3-1) ...
1023s Selecting previously unselected package pkgconf-bin.
1023s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ...
1023s Unpacking pkgconf-bin (1.8.1-4) ...
1023s Selecting previously unselected package pkgconf:arm64.
1023s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ...
1023s Unpacking pkgconf:arm64 (1.8.1-4) ...
1023s Selecting previously unselected package libtirpc-dev:arm64.
1023s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
1023s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
1023s Selecting previously unselected package r-base-dev.
1023s Preparing to unpack .../52-r-base-dev_4.4.2-1build1_all.deb ...
1023s Unpacking r-base-dev (4.4.2-1build1) ...
1023s Selecting previously unselected package pkg-r-autopkgtest.
1023s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
1023s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
1023s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
1023s Setting up libncurses-dev:arm64 (6.5-2) ...
1023s Setting up libreadline-dev:arm64 (8.2-6) ...
1023s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
1023s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
1023s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
1023s Setting up libpkgconf3:arm64 (1.8.1-4) ...
1023s Setting up libmpc3:arm64 (1.3.1-1build2) ...
1023s Setting up icu-devtools (76.1-1ubuntu2) ...
1023s Setting up pkgconf-bin (1.8.1-4) ...
1023s Setting up liblzma-dev:arm64 (5.6.3-1) ...
1023s Setting up libubsan1:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1023s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
1023s Setting up libhwasan0:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libasan8:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libtsan2:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
1023s Setting up libisl23:arm64 (0.27-1) ...
1023s Setting up libdeflate-dev:arm64 (1.23-1) ...
1023s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
1023s Setting up libcc1-0:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up liblsan0:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libblas-dev:arm64 (3.12.0-4) ...
1023s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
1023s Setting up dctrl-tools (2.24-3build3) ...
1023s Setting up libitm1:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libbz2-dev:arm64 (1.0.8-6) ...
1023s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ...
1023s Setting up libpng-dev:arm64 (1.6.44-3) ...
1023s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
1023s Setting up pkgconf:arm64 (1.8.1-4) ...
1023s Setting up liblapack-dev:arm64 (3.12.0-4) ...
1023s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
1023s Setting up cpp-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1023s Setting up libgcc-14-dev:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libstdc++-14-dev:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up libgfortran-14-dev:arm64 (14.2.0-13ubuntu1) ...
1023s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1023s Setting up cpp-14 (14.2.0-13ubuntu1) ...
1023s Setting up cpp (4:14.1.0-2ubuntu1) ...
1023s Setting up gcc-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1023s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1023s Setting up g++-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1023s Setting up gcc-14 (14.2.0-13ubuntu1) ...
1023s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1023s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1023s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1023s Setting up g++-14 (14.2.0-13ubuntu1) ...
1023s Setting up gfortran-14 (14.2.0-13ubuntu1) ...
1023s Setting up gcc (4:14.1.0-2ubuntu1) ...
1023s Setting up g++ (4:14.1.0-2ubuntu1) ...
1023s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1023s Setting up build-essential (12.10ubuntu1) ...
1023s Setting up gfortran (4:14.1.0-2ubuntu1) ...
1023s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1023s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1023s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1023s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1023s Setting up r-base-dev (4.4.2-1build1) ...
1023s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
1023s Processing triggers for libc-bin (2.40-4ubuntu1) ...
1023s Processing triggers for man-db (2.13.0-1) ...
1024s Processing triggers for install-info (7.1.1-1) ...
1026s autopkgtest [18:45:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1026s autopkgtest [18:45:39]: test pkg-r-autopkgtest: [-----------------------
1026s Test: Try to load the R library patrick
1026s 
1026s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
1026s Copyright (C) 2024 The R Foundation for Statistical Computing
1026s Platform: aarch64-unknown-linux-gnu
1026s 
1026s R is free software and comes with ABSOLUTELY NO WARRANTY.
1026s You are welcome to redistribute it under certain conditions.
1026s Type 'license()' or 'licence()' for distribution details.
1026s 
1026s R is a collaborative project with many contributors.
1026s Type 'contributors()' for more information and
1026s 'citation()' on how to cite R or R packages in publications.
1026s 
1026s Type 'demo()' for some demos, 'help()' for on-line help, or
1026s 'help.start()' for an HTML browser interface to help.
1026s Type 'q()' to quit R.
1026s 
1026s > library('patrick')
1027s > 
1027s > 
1027s Other tests are currently unsupported!
1027s They will be progressively added.
1027s autopkgtest [18:45:40]: test pkg-r-autopkgtest: -----------------------]
1028s autopkgtest [18:45:41]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1028s pkg-r-autopkgtest    PASS
1029s autopkgtest [18:45:42]: @@@@@@@@@@@@@@@@@@@@ summary
1029s run-unit-test        PASS
1029s pkg-r-autopkgtest    PASS
1048s nova [W] Using flock in prodstack6-arm64
1048s Creating nova instance adt-plucky-arm64-r-cran-patrick-20250203-182832-juju-7f2275-prod-proposed-migration-environment-15-2b0e4f41-0724-44d0-aa45-c2da76d18d54 from image adt/ubuntu-plucky-arm64-server-20250203.img (UUID fb7ca42f-38bc-45ee-b928-9b9fb089de0d)...
1048s nova [W] Timed out waiting for 5f433cd7-e1fe-4c09-86d5-54703802acc0 to get deleted.