0s autopkgtest [15:34:37]: starting date and time: 2025-03-15 15:34:37+0000
  0s autopkgtest [15:34:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:34:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hkwvwacy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-knn.covertree --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-22.secgroup --name adt-plucky-arm64-r-cran-knn.covertree-20250315-153436-juju-7f2275-prod-proposed-migration-environment-2-4039a0f7-47a7-4681-8250-ef22c3650b54 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
162s autopkgtest [15:37:19]: testbed dpkg architecture: arm64
162s autopkgtest [15:37:19]: testbed apt version: 2.9.33
163s autopkgtest [15:37:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup
163s autopkgtest [15:37:20]: testbed release detected to be: None
164s autopkgtest [15:37:21]: updating testbed package index (apt update)
164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
164s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB]
165s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
165s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
165s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
166s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
166s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
166s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB]
166s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B]
166s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
166s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB]
167s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB]
167s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
167s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B]
167s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB]
206s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB]
209s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 Packages [1452 kB]
211s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 Packages [15.8 MB]
242s Fetched 41.1 MB in 1min 18s (528 kB/s)
243s Reading package lists...
243s Reading package lists...
244s Building dependency tree...
244s Reading state information...
244s Calculating upgrade...
245s Calculating upgrade...
245s The following packages will be upgraded:
245s   pinentry-curses python3-jinja2 strace
245s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
245s Need to get 647 kB of archives.
245s After this operation, 11.3 kB of additional disk space will be used.
245s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
246s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB]
246s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
247s Fetched 647 kB in 1s (466 kB/s)
247s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
247s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
247s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
247s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ...
247s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
247s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
248s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
248s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
248s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
248s Setting up strace (6.13+ds-1ubuntu1) ...
248s Processing triggers for man-db (2.13.0-1) ...
249s Reading package lists...
249s Building dependency tree...
249s Reading state information...
249s Solving dependencies...
250s The following packages will be REMOVED:
250s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
250s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
250s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
250s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
250s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
250s After this operation, 267 MB disk space will be freed.
250s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
250s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
250s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
250s Removing libpython3.12t64:arm64 (3.12.9-1) ...
250s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
250s Removing libnsl2:arm64 (1.3.0-3build3) ...
250s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
250s Removing libunwind8:arm64 (1.6.2-3.1) ...
250s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
251s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
252s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
252s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
252s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
252s /etc/kernel/postrm.d/initramfs-tools:
252s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
253s /etc/kernel/postrm.d/zz-flash-kernel:
253s flash-kernel: Kernel 6.11.0-8-generic has been removed.
253s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
253s /etc/kernel/postrm.d/zz-update-grub:
253s Sourcing file `/etc/default/grub'
253s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
253s Generating grub configuration file ...
253s Found linux image: /boot/vmlinuz-6.14.0-10-generic
253s Found initrd image: /boot/initrd.img-6.14.0-10-generic
253s Warning: os-prober will not be executed to detect other bootable partitions.
253s Systems on them will not be added to the GRUB boot configuration.
253s Check GRUB_DISABLE_OS_PROBER documentation entry.
253s Adding boot menu entry for UEFI Firmware Settings ...
253s done
253s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
254s Processing triggers for libc-bin (2.41-1ubuntu1) ...
254s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81650 files and directories currently installed.)
254s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
254s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
254s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
254s autopkgtest [15:38:51]: upgrading testbed (apt dist-upgrade and autopurge)
254s Reading package lists...
255s Building dependency tree...
255s Reading state information...
255s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
255s Starting 2 pkgProblemResolver with broken count: 0
255s Done
256s Entering ResolveByKeep
257s 
257s Calculating upgrade...
257s The following packages will be upgraded:
257s   libc-bin libc-dev-bin libc6 libc6-dev locales
258s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
258s Need to get 9530 kB of archives.
258s After this operation, 0 B of additional disk space will be used.
258s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
260s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
260s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
263s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
264s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
270s Preconfiguring packages ...
270s Fetched 9530 kB in 12s (810 kB/s)
270s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
270s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
270s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
270s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
270s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
270s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
270s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
271s Setting up libc6:arm64 (2.41-1ubuntu2) ...
271s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
271s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
271s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
271s Setting up libc-bin (2.41-1ubuntu2) ...
271s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
271s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
271s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
271s Setting up locales (2.41-1ubuntu2) ...
272s Generating locales (this might take a while)...
274s   en_US.UTF-8... done
274s Generation complete.
274s Setting up libc-dev-bin (2.41-1ubuntu2) ...
274s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
274s Processing triggers for man-db (2.13.0-1) ...
275s Processing triggers for systemd (257.3-1ubuntu3) ...
276s Reading package lists...
276s Building dependency tree...
276s Reading state information...
276s Starting pkgProblemResolver with broken count: 0
276s Starting 2 pkgProblemResolver with broken count: 0
276s Done
277s Solving dependencies...
277s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
277s autopkgtest [15:39:14]: rebooting testbed after setup commands that affected boot
301s autopkgtest [15:39:38]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
304s autopkgtest [15:39:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-knn.covertree
306s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-knn.covertree 1.0-2 (dsc) [2232 B]
306s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-knn.covertree 1.0-2 (tar) [13.6 kB]
306s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-knn.covertree 1.0-2 (diff) [13.0 kB]
306s gpgv: Signature made Sat Sep 19 17:47:03 2020 UTC
306s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
306s gpgv:                issuer "tille@debian.org"
306s gpgv: Can't check signature: No public key
306s dpkg-source: warning: cannot verify inline signature for ./r-cran-knn.covertree_1.0-2.dsc: no acceptable signature found
306s autopkgtest [15:39:43]: testing package r-cran-knn.covertree version 1.0-2
307s autopkgtest [15:39:44]: build not needed
309s autopkgtest [15:39:46]: test run-unit-test: preparing testbed
310s Reading package lists...
310s Building dependency tree...
310s Reading state information...
310s Starting pkgProblemResolver with broken count: 0
310s Starting 2 pkgProblemResolver with broken count: 0
310s Done
311s The following NEW packages will be installed:
311s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
311s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1
311s   libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8
311s   liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
311s   libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
311s   libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
311s   libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core r-cran-brio
311s   r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
311s   r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite
311s   r-cran-knn.covertree r-cran-lattice r-cran-lifecycle r-cran-littler
311s   r-cran-magrittr r-cran-matrix r-cran-pkgbuild r-cran-pkgkitten
311s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
311s   r-cran-rcppeigen r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-waldo
311s   r-cran-withr unzip x11-common xdg-utils zip
311s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded.
311s Need to get 57.5 MB of archives.
311s After this operation, 127 MB of additional disk space will be used.
311s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
312s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
313s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
313s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
313s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
314s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
314s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
314s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
314s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
314s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
314s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
315s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
315s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
315s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
315s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
316s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
316s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
316s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
316s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
316s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
317s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
317s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
319s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
320s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
320s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
320s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
320s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
320s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
320s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
320s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
320s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
320s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
320s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
321s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
321s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
322s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
322s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
322s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
322s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
323s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
323s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
323s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
323s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
324s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
358s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
359s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
359s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
359s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB]
359s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
359s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB]
360s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
360s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
362s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
362s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
362s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
364s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
364s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
364s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
365s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
365s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
365s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
365s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
368s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
369s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
373s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB]
375s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knn.covertree arm64 1.0-2 [78.2 kB]
375s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
377s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
377s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
378s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
378s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
378s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
378s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
378s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
378s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB]
379s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
381s Preconfiguring packages ...
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381s Selecting previously unselected package fonts-dejavu-mono.
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381s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
381s Unpacking fonts-dejavu-mono (2.37-8) ...
381s Selecting previously unselected package fonts-dejavu-core.
381s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
381s Unpacking fonts-dejavu-core (2.37-8) ...
381s Selecting previously unselected package fontconfig-config.
381s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
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381s Selecting previously unselected package libfontconfig1:arm64.
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381s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
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381s Selecting previously unselected package libblas3:arm64.
381s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ...
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381s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_arm64.deb ...
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381s Preparing to unpack .../07-libxcb-render0_1.17.0-2_arm64.deb ...
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382s Selecting previously unselected package libcairo2:arm64.
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382s Selecting previously unselected package x11-common.
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382s Selecting previously unselected package libice6:arm64.
382s Preparing to unpack .../18-libice6_2%3a1.1.1-1_arm64.deb ...
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382s Selecting previously unselected package liblapack3:arm64.
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382s Selecting previously unselected package liblerc4:arm64.
382s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
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382s Selecting previously unselected package libthai-data.
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382s Selecting previously unselected package libpango-1.0-0:arm64.
382s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_arm64.deb ...
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382s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_arm64.deb ...
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382s Selecting previously unselected package libpangocairo-1.0-0:arm64.
382s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_arm64.deb ...
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382s Selecting previously unselected package libpaper2:arm64.
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383s Unpacking r-base-core (4.4.3-1) ...
383s Selecting previously unselected package r-cran-littler.
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383s Selecting previously unselected package littler.
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383s Unpacking littler (0.3.20-2) ...
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383s Unpacking r-cran-brio (1.1.5-1) ...
383s Selecting previously unselected package r-cran-ps.
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383s Selecting previously unselected package r-cran-r6.
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383s Unpacking r-cran-r6 (2.6.1-1) ...
384s Selecting previously unselected package r-cran-processx.
384s Preparing to unpack .../49-r-cran-processx_3.8.6-1_arm64.deb ...
384s Unpacking r-cran-processx (3.8.6-1) ...
384s Selecting previously unselected package r-cran-callr.
384s Preparing to unpack .../50-r-cran-callr_3.7.6-1_all.deb ...
384s Unpacking r-cran-callr (3.7.6-1) ...
384s Selecting previously unselected package r-cran-cli.
384s Preparing to unpack .../51-r-cran-cli_3.6.4-1_arm64.deb ...
384s Unpacking r-cran-cli (3.6.4-1) ...
384s Selecting previously unselected package r-cran-crayon.
384s Preparing to unpack .../52-r-cran-crayon_1.5.3-1_all.deb ...
384s Unpacking r-cran-crayon (1.5.3-1) ...
384s Selecting previously unselected package r-cran-desc.
384s Preparing to unpack .../53-r-cran-desc_1.4.3-1_all.deb ...
384s Unpacking r-cran-desc (1.4.3-1) ...
384s Selecting previously unselected package r-cran-diffobj.
384s Preparing to unpack .../54-r-cran-diffobj_0.3.5-1_arm64.deb ...
384s Unpacking r-cran-diffobj (0.3.5-1) ...
384s Selecting previously unselected package r-cran-digest.
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384s Unpacking r-cran-digest (0.6.37-1) ...
384s Selecting previously unselected package r-cran-evaluate.
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384s Unpacking r-cran-evaluate (1.0.3-1) ...
384s Selecting previously unselected package r-cran-fs.
384s Preparing to unpack .../57-r-cran-fs_1.6.5+dfsg-1_arm64.deb ...
384s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
384s Selecting previously unselected package r-cran-glue.
384s Preparing to unpack .../58-r-cran-glue_1.8.0-1_arm64.deb ...
384s Unpacking r-cran-glue (1.8.0-1) ...
384s Selecting previously unselected package r-cran-jsonlite.
384s Preparing to unpack .../59-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ...
384s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
384s Selecting previously unselected package r-cran-pkgkitten.
384s Preparing to unpack .../60-r-cran-pkgkitten_0.2.4-1_all.deb ...
384s Unpacking r-cran-pkgkitten (0.2.4-1) ...
384s Selecting previously unselected package r-cran-rcpp.
384s Preparing to unpack .../61-r-cran-rcpp_1.0.14-1_arm64.deb ...
384s Unpacking r-cran-rcpp (1.0.14-1) ...
384s Selecting previously unselected package r-cran-lattice.
384s Preparing to unpack .../62-r-cran-lattice_0.22-6-1_arm64.deb ...
384s Unpacking r-cran-lattice (0.22-6-1) ...
384s Selecting previously unselected package r-cran-matrix.
384s Preparing to unpack .../63-r-cran-matrix_1.7-3-1_arm64.deb ...
384s Unpacking r-cran-matrix (1.7-3-1) ...
384s Selecting previously unselected package r-cran-rcppeigen.
384s Preparing to unpack .../64-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ...
384s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
384s Selecting previously unselected package r-cran-knn.covertree.
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384s Unpacking r-cran-knn.covertree (1.0-2) ...
384s Selecting previously unselected package r-cran-rlang.
384s Preparing to unpack .../66-r-cran-rlang_1.1.5-1_arm64.deb ...
384s Unpacking r-cran-rlang (1.1.5-1) ...
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385s Preparing to unpack .../67-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
385s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
385s Selecting previously unselected package r-cran-magrittr.
385s Preparing to unpack .../68-r-cran-magrittr_2.0.3-1_arm64.deb ...
385s Unpacking r-cran-magrittr (2.0.3-1) ...
385s Selecting previously unselected package r-cran-pkgbuild.
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385s Unpacking r-cran-pkgbuild (1.4.6-1) ...
385s Selecting previously unselected package r-cran-rprojroot.
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385s Unpacking r-cran-rprojroot (2.0.4-2) ...
385s Selecting previously unselected package r-cran-withr.
385s Preparing to unpack .../71-r-cran-withr_3.0.2+dfsg-1_all.deb ...
385s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
385s Selecting previously unselected package r-cran-pkgload.
385s Preparing to unpack .../72-r-cran-pkgload_1.4.0-1_all.deb ...
385s Unpacking r-cran-pkgload (1.4.0-1) ...
385s Selecting previously unselected package r-cran-praise.
385s Preparing to unpack .../73-r-cran-praise_1.0.0-4build1_all.deb ...
385s Unpacking r-cran-praise (1.0.0-4build1) ...
385s Selecting previously unselected package r-cran-waldo.
385s Preparing to unpack .../74-r-cran-waldo_0.6.1-2_all.deb ...
385s Unpacking r-cran-waldo (0.6.1-2) ...
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385s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
385s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
385s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
385s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
385s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
385s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
385s Setting up libxcb-render0:arm64 (1.17.0-2) ...
385s Setting up unzip (6.0-28ubuntu6) ...
385s Setting up x11-common (1:7.7+23ubuntu3) ...
385s Setting up libdeflate0:arm64 (1.23-1) ...
385s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
385s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
385s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
385s Setting up zip (3.0-14ubuntu2) ...
385s Setting up libblas3:arm64 (3.12.1-2) ...
385s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
385s Setting up fonts-dejavu-mono (2.37-8) ...
385s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
385s Setting up fonts-dejavu-core (2.37-8) ...
385s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
385s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
385s Setting up libwebp7:arm64 (1.5.0-0.1) ...
385s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
385s Setting up libthai-data (0.1.29-2build1) ...
385s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
385s Setting up libpaper2:arm64 (2.2.5-0.3) ...
386s Setting up xdg-utils (1.2.1-2ubuntu1) ...
386s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
386s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
386s Setting up libice6:arm64 (2:1.1.1-1) ...
386s Setting up liblapack3:arm64 (3.12.1-2) ...
386s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
386s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
386s Setting up libpaper-utils (2.2.5-0.3) ...
386s Setting up libthai0:arm64 (0.1.29-2build1) ...
386s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
386s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
386s Setting up libsm6:arm64 (2:1.2.4-1) ...
386s Setting up fontconfig (2.15.0-2ubuntu1) ...
388s Regenerating fonts cache... done.
388s Setting up libxft2:arm64 (2.3.6-1build1) ...
388s Setting up libtk8.6:arm64 (8.6.16-1) ...
388s Setting up libpango-1.0-0:arm64 (1.56.2-1) ...
388s Setting up libcairo2:arm64 (1.18.2-2) ...
388s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
388s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ...
388s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ...
388s Setting up r-base-core (4.4.3-1) ...
388s Creating config file /etc/R/Renviron with new version
388s Setting up r-cran-crayon (1.5.3-1) ...
388s Setting up r-cran-lattice (0.22-6-1) ...
388s Setting up r-cran-ps (1.9.0-1) ...
388s Setting up r-cran-r6 (2.6.1-1) ...
388s Setting up r-cran-pkgkitten (0.2.4-1) ...
388s Setting up r-cran-magrittr (2.0.3-1) ...
388s Setting up r-cran-littler (0.3.20-2) ...
388s Setting up r-cran-fs (1.6.5+dfsg-1) ...
388s Setting up r-cran-rcpp (1.0.14-1) ...
388s Setting up r-cran-brio (1.1.5-1) ...
388s Setting up r-cran-diffobj (0.3.5-1) ...
388s Setting up r-cran-rlang (1.1.5-1) ...
388s Setting up littler (0.3.20-2) ...
388s Setting up r-cran-withr (3.0.2+dfsg-1) ...
388s Setting up r-cran-processx (3.8.6-1) ...
388s Setting up r-cran-praise (1.0.0-4build1) ...
388s Setting up r-cran-digest (0.6.37-1) ...
388s Setting up r-cran-evaluate (1.0.3-1) ...
388s Setting up r-cran-glue (1.8.0-1) ...
388s Setting up r-cran-cli (3.6.4-1) ...
388s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
388s Setting up r-cran-rprojroot (2.0.4-2) ...
388s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
388s Setting up r-cran-waldo (0.6.1-2) ...
388s Setting up r-cran-matrix (1.7-3-1) ...
388s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
388s Setting up r-cran-callr (3.7.6-1) ...
388s Setting up r-cran-desc (1.4.3-1) ...
388s Setting up r-cran-knn.covertree (1.0-2) ...
388s Setting up r-cran-pkgbuild (1.4.6-1) ...
388s Setting up r-cran-pkgload (1.4.0-1) ...
388s Setting up r-cran-testthat (3.2.3-1) ...
388s Processing triggers for libc-bin (2.41-1ubuntu2) ...
388s Processing triggers for man-db (2.13.0-1) ...
389s Processing triggers for install-info (7.1.1-1) ...
391s autopkgtest [15:41:08]: test run-unit-test: [-----------------------
391s BEGIN TEST testthat.R
391s 
391s R version 4.4.3 (2025-02-28) -- "Trophy Case"
391s Copyright (C) 2025 The R Foundation for Statistical Computing
391s Platform: aarch64-unknown-linux-gnu
391s 
391s R is free software and comes with ABSOLUTELY NO WARRANTY.
391s You are welcome to redistribute it under certain conditions.
391s Type 'license()' or 'licence()' for distribution details.
391s 
391s R is a collaborative project with many contributors.
391s Type 'contributors()' for more information and
391s 'citation()' on how to cite R or R packages in publications.
391s 
391s Type 'demo()' for some demos, 'help()' for on-line help, or
391s 'help.start()' for an HTML browser interface to help.
391s Type 'q()' to quit R.
391s 
391s > library(testthat)
391s > library(knn.covertree)
392s > 
392s > test_check('knn.covertree')
393s [ FAIL 0 | WARN 0 | SKIP 2 | PASS 0 ]
393s 
393s ══ Skipped tests (2) ═══════════════════════════════════════════════════════════
393s • {FNN} is not installed (2): 'test-knn.r:5:2', 'test-knn.r:18:2'
393s 
393s [ FAIL 0 | WARN 0 | SKIP 2 | PASS 0 ]
393s > 
393s autopkgtest [15:41:10]: test run-unit-test: -----------------------]
394s autopkgtest [15:41:11]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
394s run-unit-test        PASS
394s autopkgtest [15:41:11]: test pkg-r-autopkgtest: preparing testbed
394s Reading package lists...
394s Building dependency tree...
394s Reading state information...
395s Starting pkgProblemResolver with broken count: 0
395s Starting 2 pkgProblemResolver with broken count: 0
395s Done
396s The following NEW packages will be installed:
396s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
396s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
396s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
396s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
396s   libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
396s   libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev
396s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3
396s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
396s   libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
396s   libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev
396s   r-cran-fnn zlib1g-dev
396s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded.
396s Need to get 92.8 MB of archives.
396s After this operation, 334 MB of additional disk space will be used.
396s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
397s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
397s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
409s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
409s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
409s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
409s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
409s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
409s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
412s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
413s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
416s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
418s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
420s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
422s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
446s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
446s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
446s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
446s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
449s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
462s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
462s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
462s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
462s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
462s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
462s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
463s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
475s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
475s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
475s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
475s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
475s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
475s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
475s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
475s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
489s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
489s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
489s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
489s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
494s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
494s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
494s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
495s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
495s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
496s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
496s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
497s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
497s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
497s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
497s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
497s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
497s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
498s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
498s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
498s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fnn arm64 1.1.4.1-1 [125 kB]
498s Fetched 92.8 MB in 1min 42s (908 kB/s)
498s Selecting previously unselected package libisl23:arm64.
498s (Reading database ... 
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(Reading database ... 88386 files and directories currently installed.)
498s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
498s Unpacking libisl23:arm64 (0.27-1) ...
498s Selecting previously unselected package libmpc3:arm64.
498s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
498s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
498s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
498s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
498s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
499s Selecting previously unselected package cpp-14.
499s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
499s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
499s Selecting previously unselected package cpp-aarch64-linux-gnu.
499s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
499s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
499s Selecting previously unselected package cpp.
499s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
499s Unpacking cpp (4:14.2.0-1ubuntu1) ...
499s Selecting previously unselected package libcc1-0:arm64.
499s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package libitm1:arm64.
499s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package libasan8:arm64.
499s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package liblsan0:arm64.
499s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package libtsan2:arm64.
499s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package libubsan1:arm64.
499s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package libhwasan0:arm64.
499s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
499s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
499s Selecting previously unselected package libgcc-14-dev:arm64.
499s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
499s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
499s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
499s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
499s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
500s Selecting previously unselected package gcc-14.
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500s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
500s Selecting previously unselected package gcc-aarch64-linux-gnu.
500s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
500s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
500s Selecting previously unselected package gcc.
500s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
500s Unpacking gcc (4:14.2.0-1ubuntu1) ...
500s Selecting previously unselected package libstdc++-14-dev:arm64.
500s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
500s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
500s Selecting previously unselected package g++-14-aarch64-linux-gnu.
500s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
500s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
500s Selecting previously unselected package g++-14.
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500s Unpacking g++-14 (14.2.0-17ubuntu3) ...
500s Selecting previously unselected package g++-aarch64-linux-gnu.
500s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
500s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
501s Selecting previously unselected package g++.
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501s Unpacking g++ (4:14.2.0-1ubuntu1) ...
501s Selecting previously unselected package build-essential.
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501s Unpacking build-essential (12.10ubuntu1) ...
501s Selecting previously unselected package dctrl-tools.
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501s Unpacking dctrl-tools (2.24-3build3) ...
501s Selecting previously unselected package libgfortran-14-dev:arm64.
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501s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
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501s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
501s Selecting previously unselected package gfortran-14.
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501s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
501s Selecting previously unselected package gfortran-aarch64-linux-gnu.
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501s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
501s Selecting previously unselected package gfortran.
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501s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
501s Selecting previously unselected package icu-devtools.
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501s Unpacking icu-devtools (76.1-1ubuntu2) ...
501s Selecting previously unselected package libblas-dev:arm64.
501s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ...
501s Unpacking libblas-dev:arm64 (3.12.1-2) ...
501s Selecting previously unselected package libbz2-dev:arm64.
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501s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
501s Selecting previously unselected package libdeflate-dev:arm64.
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501s Unpacking libdeflate-dev:arm64 (1.23-1) ...
501s Selecting previously unselected package libicu-dev:arm64.
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501s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
502s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
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502s Selecting previously unselected package libjpeg8-dev:arm64.
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502s Selecting previously unselected package libjpeg-dev:arm64.
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502s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
502s Selecting previously unselected package liblapack-dev:arm64.
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502s Selecting previously unselected package libncurses-dev:arm64.
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502s Selecting previously unselected package libpcre2-16-0:arm64.
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503s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
503s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
503s Setting up libreadline-dev:arm64 (8.2-6) ...
503s Setting up libpcre2-16-0:arm64 (10.45-1) ...
503s Setting up r-cran-fnn (1.1.4.1-1) ...
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503s Setting up libpkgconf3:arm64 (1.8.1-4) ...
503s Setting up libmpc3:arm64 (1.3.1-1build2) ...
503s Setting up icu-devtools (76.1-1ubuntu2) ...
503s Setting up pkgconf-bin (1.8.1-4) ...
503s Setting up liblzma-dev:arm64 (5.6.4-1) ...
503s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
503s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
503s Setting up libpcre2-posix3:arm64 (10.45-1) ...
503s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
503s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
503s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
503s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
503s Setting up libisl23:arm64 (0.27-1) ...
503s Setting up libdeflate-dev:arm64 (1.23-1) ...
503s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
503s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
503s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
503s Setting up libblas-dev:arm64 (3.12.1-2) ...
503s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
503s Setting up dctrl-tools (2.24-3build3) ...
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503s Setting up libbz2-dev:arm64 (1.0.8-6) ...
503s Setting up libpcre2-dev:arm64 (10.45-1) ...
503s Setting up libpng-dev:arm64 (1.6.47-1) ...
503s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
503s Setting up pkgconf:arm64 (1.8.1-4) ...
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503s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
503s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
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503s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
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503s Setting up gcc-14 (14.2.0-17ubuntu3) ...
503s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
503s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
503s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
503s Setting up g++-14 (14.2.0-17ubuntu3) ...
503s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
503s Setting up gcc (4:14.2.0-1ubuntu1) ...
503s Setting up g++ (4:14.2.0-1ubuntu1) ...
503s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
503s Setting up build-essential (12.10ubuntu1) ...
503s Setting up gfortran (4:14.2.0-1ubuntu1) ...
503s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
503s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
503s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
503s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
503s Setting up r-base-dev (4.4.3-1) ...
503s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
503s Processing triggers for libc-bin (2.41-1ubuntu2) ...
503s Processing triggers for man-db (2.13.0-1) ...
504s Processing triggers for install-info (7.1.1-1) ...
505s autopkgtest [15:43:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
505s autopkgtest [15:43:02]: test pkg-r-autopkgtest: [-----------------------
505s Test: Try to load the R library knn.covertree
505s 
505s R version 4.4.3 (2025-02-28) -- "Trophy Case"
505s Copyright (C) 2025 The R Foundation for Statistical Computing
505s Platform: aarch64-unknown-linux-gnu
505s 
505s R is free software and comes with ABSOLUTELY NO WARRANTY.
505s You are welcome to redistribute it under certain conditions.
505s Type 'license()' or 'licence()' for distribution details.
505s 
505s R is a collaborative project with many contributors.
505s Type 'contributors()' for more information and
505s 'citation()' on how to cite R or R packages in publications.
505s 
505s Type 'demo()' for some demos, 'help()' for on-line help, or
505s 'help.start()' for an HTML browser interface to help.
505s Type 'q()' to quit R.
505s 
505s > library('knn.covertree')
506s > 
506s > 
506s Other tests are currently unsupported!
506s They will be progressively added.
506s autopkgtest [15:43:03]: test pkg-r-autopkgtest: -----------------------]
507s autopkgtest [15:43:04]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
507s pkg-r-autopkgtest    PASS
507s autopkgtest [15:43:04]: @@@@@@@@@@@@@@@@@@@@ summary
507s run-unit-test        PASS
507s pkg-r-autopkgtest    PASS
526s nova [W] Using flock in prodstack6-arm64
526s Creating nova instance adt-plucky-arm64-r-cran-knn.covertree-20250315-153436-juju-7f2275-prod-proposed-migration-environment-2-4039a0f7-47a7-4681-8250-ef22c3650b54 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
526s nova [W] Timed out waiting for cb285f52-b948-4300-90ff-6079b4106a58 to get deleted.