0s autopkgtest [15:33:18]: starting date and time: 2025-03-15 15:33:18+0000 0s autopkgtest [15:33:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:33:18]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e091t3g2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-intervals --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-12.secgroup --name adt-plucky-arm64-r-cran-intervals-20250315-153318-juju-7f2275-prod-proposed-migration-environment-15-5b4db3df-4f5c-4279-9a44-d49e8834b7d6 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 209s autopkgtest [15:36:47]: testbed dpkg architecture: arm64 210s autopkgtest [15:36:48]: testbed apt version: 2.9.33 210s autopkgtest [15:36:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 210s autopkgtest [15:36:48]: testbed release detected to be: None 211s autopkgtest [15:36:49]: updating testbed package index (apt update) 212s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 212s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 212s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 212s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 212s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 212s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 213s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 213s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 213s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 213s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 213s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 213s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 213s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 213s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 214s Fetched 1094 kB in 2s (574 kB/s) 215s Reading package lists... 216s + lsb_release --codename --short 216s + RELEASE=plucky 216s + cat 216s + [ plucky != trusty ] 216s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 217s Calculating upgrade... 217s Calculating upgrade... 218s The following packages will be upgraded: 218s python3-jinja2 strace 218s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 218s Need to get 608 kB of archives. 218s After this operation, 11.3 kB of additional disk space will be used. 218s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 219s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 219s Fetched 608 kB in 1s (581 kB/s) 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 220s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 220s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 220s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 220s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 220s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 220s Setting up strace (6.13+ds-1ubuntu1) ... 220s Processing triggers for man-db (2.13.0-1) ... 221s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 221s + /usr/lib/apt/apt-helper analyze-pattern ?true 221s + uname -r 221s + sed s/\./\\./g 221s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 221s + apt list ?obsolete 221s + tail -n+2 221s + cut -d/+ -f1grep -v ^linux-.*6\.14\.0-10-generic.* 221s 221s + obsolete_pkgs=linux-headers-6.11.0-8-generic 221s linux-headers-6.11.0-8 221s linux-image-6.11.0-8-generic 221s linux-modules-6.11.0-8-generic 221s linux-tools-6.11.0-8-generic 221s linux-tools-6.11.0-8 221s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 222s Solving dependencies... 222s The following packages will be REMOVED: 222s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 222s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 222s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 222s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 223s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 223s After this operation, 267 MB disk space will be freed. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 223s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 223s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 223s Removing libpython3.12t64:arm64 (3.12.9-1) ... 223s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 223s Removing libnsl2:arm64 (1.3.0-3build3) ... 223s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 223s Removing libunwind8:arm64 (1.6.2-3.1) ... 223s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 224s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 225s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 225s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 225s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 226s /etc/kernel/postrm.d/initramfs-tools: 226s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 226s /etc/kernel/postrm.d/zz-flash-kernel: 226s flash-kernel: Kernel 6.11.0-8-generic has been removed. 226s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 226s /etc/kernel/postrm.d/zz-update-grub: 226s Sourcing file `/etc/default/grub' 226s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 226s Generating grub configuration file ... 226s Found linux image: /boot/vmlinuz-6.14.0-10-generic 226s Found initrd image: /boot/initrd.img-6.14.0-10-generic 227s Warning: os-prober will not be executed to detect other bootable partitions. 227s Systems on them will not be added to the GRUB boot configuration. 227s Check GRUB_DISABLE_OS_PROBER documentation entry. 227s Adding boot menu entry for UEFI Firmware Settings ... 227s done 227s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 227s Processing triggers for libc-bin (2.41-1ubuntu1) ... 227s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 227s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 227s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 227s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 227s + grep -q trusty /etc/lsb-release 227s + [ ! -d /usr/share/doc/unattended-upgrades ] 227s + [ ! -d /usr/share/doc/lxd ] 227s + [ ! -d /usr/share/doc/lxd-client ] 227s + [ ! -d /usr/share/doc/snapd ] 227s + type iptables 227s + cat 227s + chmod 755 /etc/rc.local 227s + . /etc/rc.local 227s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 227s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 227s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 227s + uname -m 227s + [ aarch64 = ppc64le ] 227s + [ -d /run/systemd/system ] 227s + systemd-detect-virt --quiet --vm 227s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 227s + cat 227s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 227s + echo COMPRESS=lz4 227s autopkgtest [15:37:05]: upgrading testbed (apt dist-upgrade and autopurge) 228s Reading package lists... 228s Building dependency tree... 228s Reading state information... 228s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 229s Starting 2 pkgProblemResolver with broken count: 0 229s Done 229s Entering ResolveByKeep 230s 230s Calculating upgrade... 230s The following packages will be upgraded: 230s libc-bin libc-dev-bin libc6 libc6-dev locales 231s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 231s Need to get 9530 kB of archives. 231s After this operation, 0 B of additional disk space will be used. 231s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 233s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 233s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 236s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 237s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 241s Preconfiguring packages ... 241s Fetched 9530 kB in 11s (898 kB/s) 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 242s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 242s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 242s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 242s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 242s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 242s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 242s Setting up libc6:arm64 (2.41-1ubuntu2) ... 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 242s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 242s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 242s Setting up libc-bin (2.41-1ubuntu2) ... 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 243s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 243s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 243s Setting up locales (2.41-1ubuntu2) ... 244s Generating locales (this might take a while)... 246s en_US.UTF-8... done 246s Generation complete. 246s Setting up libc-dev-bin (2.41-1ubuntu2) ... 246s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 246s Processing triggers for man-db (2.13.0-1) ... 247s Processing triggers for systemd (257.3-1ubuntu3) ... 248s Reading package lists... 248s Building dependency tree... 248s Reading state information... 248s Starting pkgProblemResolver with broken count: 0 248s Starting 2 pkgProblemResolver with broken count: 0 248s Done 249s Solving dependencies... 249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 250s autopkgtest [15:37:28]: rebooting testbed after setup commands that affected boot 274s autopkgtest [15:37:52]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 276s autopkgtest [15:37:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-intervals 279s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-intervals 0.15.5-1 (dsc) [2097 B] 279s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-intervals 0.15.5-1 (tar) [337 kB] 279s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-intervals 0.15.5-1 (diff) [5332 B] 280s gpgv: Signature made Wed Sep 4 01:37:10 2024 UTC 280s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 280s gpgv: issuer "plessy@debian.org" 280s gpgv: Can't check signature: No public key 280s dpkg-source: warning: cannot verify inline signature for ./r-cran-intervals_0.15.5-1.dsc: no acceptable signature found 280s autopkgtest [15:37:58]: testing package r-cran-intervals version 0.15.5-1 280s autopkgtest [15:37:58]: build not needed 288s autopkgtest [15:38:06]: test run-unit-test: preparing testbed 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 289s Starting pkgProblemResolver with broken count: 0 289s Starting 2 pkgProblemResolver with broken count: 0 289s Done 290s The following NEW packages will be installed: 290s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 290s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 290s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 290s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 290s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 290s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 290s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-intervals unzip 290s x11-common xdg-utils zip 290s 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. 290s Need to get 39.0 MB of archives. 290s After this operation, 80.2 MB of additional disk space will be used. 290s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 291s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 291s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 292s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 292s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 292s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 292s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 293s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 293s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 293s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 293s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 293s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 293s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 293s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 294s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 294s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 294s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 295s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 295s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 295s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 295s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 295s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 298s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 298s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 298s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 298s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 298s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 298s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 298s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 298s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 298s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 298s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 298s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 300s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 300s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 300s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 300s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 300s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 300s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 301s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 301s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 301s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 302s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 302s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 335s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-intervals arm64 0.15.5-1 [602 kB] 336s Preconfiguring packages ... 336s Fetched 39.0 MB in 46s (851 kB/s) 336s Selecting previously unselected package fonts-dejavu-mono. 336s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 336s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 336s Unpacking fonts-dejavu-mono (2.37-8) ... 336s Selecting previously unselected package fonts-dejavu-core. 336s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 336s Unpacking fonts-dejavu-core (2.37-8) ... 336s Selecting previously unselected package fontconfig-config. 336s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 336s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 336s Selecting previously unselected package libfontconfig1:arm64. 336s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 336s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 336s Selecting previously unselected package fontconfig. 336s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 336s Unpacking fontconfig (2.15.0-2ubuntu1) ... 337s Selecting previously unselected package libblas3:arm64. 337s Preparing to unpack .../05-libblas3_3.12.1-2_arm64.deb ... 337s Unpacking libblas3:arm64 (3.12.1-2) ... 337s Selecting previously unselected package libpixman-1-0:arm64. 337s Preparing to unpack .../06-libpixman-1-0_0.44.0-3_arm64.deb ... 337s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 337s Selecting previously unselected package libxcb-render0:arm64. 337s Preparing to unpack .../07-libxcb-render0_1.17.0-2_arm64.deb ... 337s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 337s Selecting previously unselected package libxcb-shm0:arm64. 337s Preparing to unpack .../08-libxcb-shm0_1.17.0-2_arm64.deb ... 337s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 337s Selecting previously unselected package libxrender1:arm64. 337s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 337s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 337s Selecting previously unselected package libcairo2:arm64. 337s Preparing to unpack .../10-libcairo2_1.18.2-2_arm64.deb ... 337s Unpacking libcairo2:arm64 (1.18.2-2) ... 337s Selecting previously unselected package libdatrie1:arm64. 337s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_arm64.deb ... 337s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 337s Selecting previously unselected package libdeflate0:arm64. 337s Preparing to unpack .../12-libdeflate0_1.23-1_arm64.deb ... 337s Unpacking libdeflate0:arm64 (1.23-1) ... 337s Selecting previously unselected package libgfortran5:arm64. 337s Preparing to unpack .../13-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 337s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 337s Selecting previously unselected package libgomp1:arm64. 337s Preparing to unpack .../14-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 337s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 337s Selecting previously unselected package libgraphite2-3:arm64. 337s Preparing to unpack .../15-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 337s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 337s Selecting previously unselected package libharfbuzz0b:arm64. 337s Preparing to unpack .../16-libharfbuzz0b_10.2.0-1_arm64.deb ... 337s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 337s Selecting previously unselected package x11-common. 337s Preparing to unpack .../17-x11-common_1%3a7.7+23ubuntu3_all.deb ... 337s Unpacking x11-common (1:7.7+23ubuntu3) ... 337s Selecting previously unselected package libice6:arm64. 337s Preparing to unpack .../18-libice6_2%3a1.1.1-1_arm64.deb ... 337s Unpacking libice6:arm64 (2:1.1.1-1) ... 337s Selecting previously unselected package libjpeg-turbo8:arm64. 337s Preparing to unpack .../19-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 337s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 337s Selecting previously unselected package libjpeg8:arm64. 337s Preparing to unpack .../20-libjpeg8_8c-2ubuntu11_arm64.deb ... 337s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 337s Selecting previously unselected package liblapack3:arm64. 337s Preparing to unpack .../21-liblapack3_3.12.1-2_arm64.deb ... 337s Unpacking liblapack3:arm64 (3.12.1-2) ... 337s Selecting previously unselected package liblerc4:arm64. 337s Preparing to unpack .../22-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 337s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 337s Selecting previously unselected package libthai-data. 337s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 337s Unpacking libthai-data (0.1.29-2build1) ... 337s Selecting previously unselected package libthai0:arm64. 337s Preparing to unpack .../24-libthai0_0.1.29-2build1_arm64.deb ... 337s Unpacking libthai0:arm64 (0.1.29-2build1) ... 337s Selecting previously unselected package libpango-1.0-0:arm64. 337s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_arm64.deb ... 337s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 337s Selecting previously unselected package libpangoft2-1.0-0:arm64. 337s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 337s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 337s Selecting previously unselected package libpangocairo-1.0-0:arm64. 337s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 337s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 337s Selecting previously unselected package libpaper2:arm64. 337s Preparing to unpack .../28-libpaper2_2.2.5-0.3_arm64.deb ... 337s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 337s Selecting previously unselected package libpaper-utils. 337s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_arm64.deb ... 337s Unpacking libpaper-utils (2.2.5-0.3) ... 337s Selecting previously unselected package libsharpyuv0:arm64. 337s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_arm64.deb ... 337s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 337s Selecting previously unselected package libsm6:arm64. 338s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_arm64.deb ... 338s Unpacking libsm6:arm64 (2:1.2.4-1) ... 338s Selecting previously unselected package libtcl8.6:arm64. 338s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 338s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 338s Selecting previously unselected package libjbig0:arm64. 338s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 338s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 338s Selecting previously unselected package libwebp7:arm64. 338s Preparing to unpack .../34-libwebp7_1.5.0-0.1_arm64.deb ... 338s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 338s Selecting previously unselected package libtiff6:arm64. 338s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 338s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 338s Selecting previously unselected package libxft2:arm64. 338s Preparing to unpack .../36-libxft2_2.3.6-1build1_arm64.deb ... 338s Unpacking libxft2:arm64 (2.3.6-1build1) ... 338s Selecting previously unselected package libxss1:arm64. 338s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_arm64.deb ... 338s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 338s Selecting previously unselected package libtk8.6:arm64. 338s Preparing to unpack .../38-libtk8.6_8.6.16-1_arm64.deb ... 338s Unpacking libtk8.6:arm64 (8.6.16-1) ... 338s Selecting previously unselected package libxt6t64:arm64. 338s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 338s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 338s Selecting previously unselected package zip. 338s Preparing to unpack .../40-zip_3.0-14ubuntu2_arm64.deb ... 338s Unpacking zip (3.0-14ubuntu2) ... 338s Selecting previously unselected package unzip. 338s Preparing to unpack .../41-unzip_6.0-28ubuntu6_arm64.deb ... 338s Unpacking unzip (6.0-28ubuntu6) ... 338s Selecting previously unselected package xdg-utils. 338s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ... 338s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 338s Selecting previously unselected package r-base-core. 338s Preparing to unpack .../43-r-base-core_4.4.3-1_arm64.deb ... 338s Unpacking r-base-core (4.4.3-1) ... 338s Selecting previously unselected package r-cran-intervals. 338s Preparing to unpack .../44-r-cran-intervals_0.15.5-1_arm64.deb ... 338s Unpacking r-cran-intervals (0.15.5-1) ... 338s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 338s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 338s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 338s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 338s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 338s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 338s Setting up libxcb-render0:arm64 (1.17.0-2) ... 338s Setting up unzip (6.0-28ubuntu6) ... 338s Setting up x11-common (1:7.7+23ubuntu3) ... 339s Setting up libdeflate0:arm64 (1.23-1) ... 339s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 339s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 339s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 339s Setting up zip (3.0-14ubuntu2) ... 339s Setting up libblas3:arm64 (3.12.1-2) ... 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 339s Setting up fonts-dejavu-mono (2.37-8) ... 339s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 339s Setting up fonts-dejavu-core (2.37-8) ... 339s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 339s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 339s Setting up libwebp7:arm64 (1.5.0-0.1) ... 339s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 339s Setting up libthai-data (0.1.29-2build1) ... 339s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 339s Setting up libpaper2:arm64 (2.2.5-0.3) ... 339s Setting up xdg-utils (1.2.1-2ubuntu1) ... 339s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 339s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 339s Setting up libice6:arm64 (2:1.1.1-1) ... 339s Setting up liblapack3:arm64 (3.12.1-2) ... 339s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 339s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 339s Setting up libpaper-utils (2.2.5-0.3) ... 339s Setting up libthai0:arm64 (0.1.29-2build1) ... 339s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 339s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 339s Setting up libsm6:arm64 (2:1.2.4-1) ... 339s Setting up fontconfig (2.15.0-2ubuntu1) ... 341s Regenerating fonts cache... done. 341s Setting up libxft2:arm64 (2.3.6-1build1) ... 341s Setting up libtk8.6:arm64 (8.6.16-1) ... 341s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 341s Setting up libcairo2:arm64 (1.18.2-2) ... 341s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 341s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 341s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 341s Setting up r-base-core (4.4.3-1) ... 341s Creating config file /etc/R/Renviron with new version 342s Setting up r-cran-intervals (0.15.5-1) ... 342s Processing triggers for libc-bin (2.41-1ubuntu2) ... 342s Processing triggers for man-db (2.13.0-1) ... 343s Processing triggers for install-info (7.1.1-1) ... 345s autopkgtest [15:39:03]: test run-unit-test: [----------------------- 345s BEGIN TEST intervals_test_code.R 345s 345s R version 4.4.3 (2025-02-28) -- "Trophy Case" 345s Copyright (C) 2025 The R Foundation for Statistical Computing 345s Platform: aarch64-unknown-linux-gnu 345s 345s R is free software and comes with ABSOLUTELY NO WARRANTY. 345s You are welcome to redistribute it under certain conditions. 345s Type 'license()' or 'licence()' for distribution details. 345s 345s R is a collaborative project with many contributors. 345s Type 'contributors()' for more information and 345s 'citation()' on how to cite R or R packages in publications. 345s 345s Type 'demo()' for some demos, 'help()' for on-line help, or 345s 'help.start()' for an HTML browser interface to help. 345s Type 'q()' to quit R. 345s 345s > library( "intervals" ) 345s > 345s > ######## NAs and empty intervals 345s > 345s > u <- Intervals_full( as.numeric(NA), type = "Z" ) 345s > u <- c( u, u ) 345s > v <- Intervals_full( c(1,3,1,Inf), type = "Z" ) 346s > x <- Intervals( 1, closed = FALSE, type = "Z" ) # empty 346s > w <- c( x, u, v ) 346s Warning message: 346s Coercion to 'Intervals_full' required. 346s > rownames(w) <- letters[ 1:nrow(w) ] 346s > 346s > x 346s Object of class Intervals 346s 1 interval over Z: 346s (1, 1) 346s > u 346s Object of class Intervals_full 346s 2 intervals over Z: 346s [NA, NA] 346s [NA, NA] 346s > v 346s Object of class Intervals_full 346s 2 intervals over Z: 346s [1, 1] 346s [3, Inf] 346s > w 346s Object of class Intervals_full 346s 5 intervals over Z: 346s a (1, 1) 346s b [NA, NA] 346s c [NA, NA] 346s d [1, 1] 346s e [3, Inf] 346s > 346s > is.na(w) 346s a b c d e 346s FALSE TRUE TRUE FALSE FALSE 346s > empty(w) 346s [1] TRUE NA NA FALSE FALSE 346s > 346s > distance_to_nearest( u, v ) 346s [1] NA NA 346s > distance_to_nearest( w, v ) 346s a b c d e 346s NA NA NA 0 0 346s > 346s > pts <- c( -Inf, Inf, NA, NaN, 0:2 ) 346s > 346s > distance_to_nearest( pts, v ) 346s Warning message: 346s Some empty 'from' intervals encountered. Setting to NA... 346s [1] NA 0 NA NA 1 0 1 346s > 346s > identical( 346s + distance_to_nearest( pts, v ), 346s + distance_to_nearest( pts, open_intervals( v ) ) 346s + ) 346s Warning message: 346s Some empty 'from' intervals encountered. Setting to NA... 346s [1] TRUE 346s > 346s > interval_overlap( w, v ) 346s $a 346s integer(0) 346s 346s $b 346s integer(0) 346s 346s $c 346s integer(0) 346s 346s $d 346s [1] 1 346s 346s $e 346s [1] 2 346s 346s > 346s > reduce( w ) 346s Warning message: 346s Intervals with NA endpoints removed. 346s Warning message: 346s Empty intervals encountered and removed. 346s Object of class Intervals_full 346s 2 intervals over Z: 346s (0, 2) 346s (2, Inf) 346s > 346s > open_intervals(w) 346s Object of class Intervals_full 346s 4 intervals over Z: 346s b (NA, NA) 346s c (NA, NA) 346s d (0, 2) 346s e (2, Inf) 346s > 346s > 346s > 346s > 346s > ######## Subset assignment 346s > 346s > u <- Intervals( 1:8, type = "Z" ) 346s > rownames( u ) <- letters[ 1:nrow(u) ] 346s > v <- Intervals( -4:-1, type = "Z" ) 346s > rownames( v ) <- letters[ nrow(u) + 1:nrow(v) ] 346s > w <- open_intervals(u) 346s > 346s > u 346s Object of class Intervals 346s 4 intervals over Z: 346s a [1, 5] 346s b [2, 6] 346s c [3, 7] 346s d [4, 8] 346s > v 346s Object of class Intervals 346s 2 intervals over Z: 346s e [-4, -2] 346s f [-3, -1] 346s > w 346s Object of class Intervals 346s 4 intervals over Z: 346s a (0, 6) 346s b (1, 7) 346s c (2, 8) 346s d (3, 9) 346s > 346s > # Basic 346s > z <- u; z[2:3,] <- v 346s > z 346s Object of class Intervals 346s 4 intervals over Z: 346s a [1, 5] 346s e [-4, -2] 346s f [-3, -1] 346s d [4, 8] 346s > 346s > # With names 346s > z <- u; z[c("a","d"),] <- v 346s > z 346s Object of class Intervals 346s 4 intervals over Z: 346s e [-4, -2] 346s b [2, 6] 346s c [3, 7] 346s f [-3, -1] 346s > 346s > # Missing row name 346s > result <- try( { z <- u; z[c("a","e"),] <- v }, TRUE ) 346s > result 346s [1] "Error in .local(x, i, j = j, ..., value) : \n Cannot assign to NA indices or row names which do not exist.\n" 346s attr(,"class") 346s [1] "try-error" 346s attr(,"condition") 346s 346s > 346s > # Closure adjustment 346s > z <- w; z[2:3,] <- v 346s > z 346s Object of class Intervals 346s 4 intervals over Z: 346s a (0, 6) 346s e (-5, -1) 346s f (-4, 0) 346s d (3, 9) 346s > 346s > # Size mismatch error 346s > result <- try( { z <- w; z[2:3,] <- v[1,] }, TRUE ) 346s > result 346s [1] "Error in .local(x, i, j = j, ..., value) : \n Replacement object is of the wrong size.\n" 346s attr(,"class") 346s [1] "try-error" 346s attr(,"condition") 346s 346s > 346s > # Intervals_full method 346s > x <- Intervals_full( 1:6, c(TRUE,FALSE) ) 346s > rownames( x ) <- letters[ 1:nrow(x) ] 346s > y <- Intervals_full( -4:-1 ) 346s > 346s > x 346s Object of class Intervals_full 346s 3 intervals over R: 346s a [1, 4) 346s b [2, 5) 346s c [3, 6) 346s > y 346s Object of class Intervals_full 346s 2 intervals over R: 346s [-4, -2] 346s [-3, -1] 346s > 346s > # Missing value names 346s > z <- x; z[2,] <- y[1,] 346s > z 346s Object of class Intervals_full 346s 3 intervals over R: 346s a [1, 4) 346s [-4, -2] 346s c [3, 6) 346s > 346s > # Missing x names 346s > z <- y; z[1,] <- x[1,] 346s > z 346s Object of class Intervals_full 346s 2 intervals over R: 346s a [1, 4) 346s [-3, -1] 346s > 346s > # Type mismatch error 346s > result <- try( { z <- x; z[2:3,] <- v }, TRUE ) 346s > result 346s [1] "Error in .local(x, i, j = j, ..., value) : Types do not match (Z vs. R).\n" 346s attr(,"class") 346s [1] "try-error" 346s attr(,"condition") 346s 346s > 346s > # Coercion up 346s > type(v) <- "R" 346s > closed(v) <- c( FALSE, TRUE ) 346s > x 346s Object of class Intervals_full 346s 3 intervals over R: 346s a [1, 4) 346s b [2, 5) 346s c [3, 6) 346s > v 346s Object of class Intervals 346s 2 intervals over R: 346s e (-4, -2] 346s f (-3, -1] 346s > z <- x; z[2:3,] <- v 346s > z 346s Object of class Intervals_full 346s 3 intervals over R: 346s a [1, 4) 346s e (-4, -2] 346s f (-3, -1] 346s > 346s > # With warning due to assignment 346s > z <- v; z[1,] <- x[3,] 346s > z 346s Object of class Intervals_full 346s 2 intervals over R: 346s Warning message: 346s Coercion to 'Intervals_full' required. 346s c [3, 6) 346s f (-3, -1] 346s > 346s > # No row name copying with matrices 346s > A <- matrix( 0, 2, 2 ) 346s > rownames(A) <- c("1","2") 346s > z <- x; z[1:2,] <- A 346s > z 346s Object of class Intervals_full 346s 3 intervals over R: 346s a [0, 0) 346s b [0, 0) 346s c [3, 6) 346s > 346s > 346s > 346s > 346s > ######## distance_to_nearest() behavior 346s > 346s > a <- Intervals_full( c(2,5), FALSE ) 346s > b <- Intervals_full( c(1,5,2,10), matrix(c(TRUE,FALSE,FALSE,TRUE),2,2) ) 346s > 346s > a 346s Object of class Intervals_full 346s 1 interval over R: 346s (2, 5) 346s > b 346s Object of class Intervals_full 346s 2 intervals over R: 346s [1, 2) 346s (5, 10] 346s > 346s > distance_to_nearest(a,b) 346s [1] 0 346s > 346s > type(a) <- "Z" 346s > type(b) <- "Z" 346s > 346s > distance_to_nearest(a,b) 346s [1] 2 346s > 346s > a <- as( a, "Intervals" ) 346s > b <- as( open_intervals( b ), "Intervals" ) 346s > 346s > a 346s Object of class Intervals 346s 1 interval over Z: 346s (2, 5) 346s > b 346s Object of class Intervals 346s 2 intervals over Z: 346s (0, 2) 346s (5, 11) 346s > 346s > distance_to_nearest(a,b) 346s [1] 2 346s > 346s > type(a) <- "R" 346s > type(b) <- "R" 346s > 346s > distance_to_nearest(a,b) 346s [1] 0 346s > 346s autopkgtest [15:39:04]: test run-unit-test: -----------------------] 347s autopkgtest [15:39:05]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 347s run-unit-test PASS 347s autopkgtest [15:39:05]: test pkg-r-autopkgtest: preparing testbed 347s Reading package lists... 347s Building dependency tree... 347s Reading state information... 348s Starting pkgProblemResolver with broken count: 0 348s Starting 2 pkgProblemResolver with broken count: 0 348s Done 349s The following NEW packages will be installed: 349s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 349s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 349s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 349s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 349s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 349s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 349s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 349s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 349s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 349s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 349s zlib1g-dev 349s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 349s Need to get 92.7 MB of archives. 349s After this operation, 334 MB of additional disk space will be used. 349s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 350s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 350s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 362s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 362s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 362s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 362s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 362s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 362s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 366s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 368s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 371s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 372s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 374s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 378s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 404s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 404s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 404s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 404s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 408s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 422s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 422s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 422s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 422s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 422s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 422s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 423s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 437s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 437s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 437s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 437s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 437s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 437s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 437s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 437s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 451s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 452s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 452s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 452s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 457s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 457s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 458s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 458s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 458s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 459s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 459s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 459s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 460s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 460s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 460s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 460s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 460s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 460s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 460s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 461s Fetched 92.7 MB in 1min 52s (829 kB/s) 461s Selecting previously unselected package libisl23:arm64. 461s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83853 files and directories currently installed.) 461s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 461s Unpacking libisl23:arm64 (0.27-1) ... 461s Selecting previously unselected package libmpc3:arm64. 461s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 461s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 461s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 461s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 461s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package cpp-14. 461s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 461s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package cpp-aarch64-linux-gnu. 461s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 461s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 461s Selecting previously unselected package cpp. 461s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 461s Unpacking cpp (4:14.2.0-1ubuntu1) ... 461s Selecting previously unselected package libcc1-0:arm64. 461s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 461s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 461s Selecting previously unselected package libitm1:arm64. 461s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb ... 461s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 462s Selecting previously unselected package libasan8:arm64. 462s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ... 462s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 462s Selecting previously unselected package liblsan0:arm64. 462s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 462s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 462s Selecting previously unselected package libtsan2:arm64. 462s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 462s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 462s Selecting previously unselected package libubsan1:arm64. 462s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 462s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 462s Selecting previously unselected package libhwasan0:arm64. 462s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 462s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 462s Selecting previously unselected package libgcc-14-dev:arm64. 462s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 462s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 462s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 462s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 462s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 462s Selecting previously unselected package gcc-14. 462s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 462s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 462s Selecting previously unselected package gcc-aarch64-linux-gnu. 463s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 463s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 463s Selecting previously unselected package gcc. 463s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 463s Unpacking gcc (4:14.2.0-1ubuntu1) ... 463s Selecting previously unselected package libstdc++-14-dev:arm64. 463s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 463s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 463s Selecting previously unselected package g++-14-aarch64-linux-gnu. 463s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 463s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 463s Selecting previously unselected package g++-14. 463s Preparing to unpack .../20-g++-14_14.2.0-17ubuntu3_arm64.deb ... 463s Unpacking g++-14 (14.2.0-17ubuntu3) ... 463s Selecting previously unselected package g++-aarch64-linux-gnu. 463s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 463s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 463s Selecting previously unselected package g++. 463s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 463s Unpacking g++ (4:14.2.0-1ubuntu1) ... 463s Selecting previously unselected package build-essential. 463s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 463s Unpacking build-essential (12.10ubuntu1) ... 463s Selecting previously unselected package dctrl-tools. 463s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 463s Unpacking dctrl-tools (2.24-3build3) ... 463s Selecting previously unselected package libgfortran-14-dev:arm64. 463s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 463s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 463s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 463s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 463s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 463s Selecting previously unselected package gfortran-14. 464s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 464s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 464s Selecting previously unselected package gfortran-aarch64-linux-gnu. 464s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 464s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 464s Selecting previously unselected package gfortran. 464s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 464s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 464s Selecting previously unselected package icu-devtools. 464s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 464s Unpacking icu-devtools (76.1-1ubuntu2) ... 464s Selecting previously unselected package libblas-dev:arm64. 464s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 464s Unpacking libblas-dev:arm64 (3.12.1-2) ... 464s Selecting previously unselected package libbz2-dev:arm64. 464s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 464s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 464s Selecting previously unselected package libdeflate-dev:arm64. 464s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 464s Unpacking libdeflate-dev:arm64 (1.23-1) ... 464s Selecting previously unselected package libicu-dev:arm64. 464s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 464s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 464s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 464s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 464s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 464s Selecting previously unselected package libjpeg8-dev:arm64. 464s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 464s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 464s Selecting previously unselected package libjpeg-dev:arm64. 464s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 464s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 464s Selecting previously unselected package liblapack-dev:arm64. 464s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 464s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 464s Selecting previously unselected package libncurses-dev:arm64. 464s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 464s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 464s Selecting previously unselected package libpcre2-16-0:arm64. 464s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 464s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 464s Selecting previously unselected package libpcre2-32-0:arm64. 464s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 464s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 465s Selecting previously unselected package libpcre2-posix3:arm64. 465s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 465s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 465s Selecting previously unselected package libpcre2-dev:arm64. 465s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 465s Unpacking libpcre2-dev:arm64 (10.45-1) ... 465s Selecting previously unselected package libpkgconf3:arm64. 465s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ... 465s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 465s Selecting previously unselected package zlib1g-dev:arm64. 465s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 465s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 465s Selecting previously unselected package libpng-dev:arm64. 465s Preparing to unpack .../46-libpng-dev_1.6.47-1_arm64.deb ... 465s Unpacking libpng-dev:arm64 (1.6.47-1) ... 465s Selecting previously unselected package libreadline-dev:arm64. 465s Preparing to unpack .../47-libreadline-dev_8.2-6_arm64.deb ... 465s Unpacking libreadline-dev:arm64 (8.2-6) ... 465s Selecting previously unselected package liblzma-dev:arm64. 465s Preparing to unpack .../48-liblzma-dev_5.6.4-1_arm64.deb ... 465s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 465s Selecting previously unselected package pkgconf-bin. 465s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ... 465s Unpacking pkgconf-bin (1.8.1-4) ... 465s Selecting previously unselected package pkgconf:arm64. 465s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ... 465s Unpacking pkgconf:arm64 (1.8.1-4) ... 465s Selecting previously unselected package libtirpc-dev:arm64. 465s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 465s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 465s Selecting previously unselected package r-base-dev. 465s Preparing to unpack .../52-r-base-dev_4.4.3-1_all.deb ... 465s Unpacking r-base-dev (4.4.3-1) ... 465s Selecting previously unselected package pkg-r-autopkgtest. 465s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 465s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 465s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 465s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 465s Setting up libreadline-dev:arm64 (8.2-6) ... 465s Setting up libpcre2-16-0:arm64 (10.45-1) ... 465s Setting up libpcre2-32-0:arm64 (10.45-1) ... 465s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 465s Setting up libpkgconf3:arm64 (1.8.1-4) ... 465s Setting up libmpc3:arm64 (1.3.1-1build2) ... 465s Setting up icu-devtools (76.1-1ubuntu2) ... 465s Setting up pkgconf-bin (1.8.1-4) ... 465s Setting up liblzma-dev:arm64 (5.6.4-1) ... 465s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 465s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 465s Setting up libpcre2-posix3:arm64 (10.45-1) ... 465s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 465s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 465s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 465s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 465s Setting up libisl23:arm64 (0.27-1) ... 465s Setting up libdeflate-dev:arm64 (1.23-1) ... 465s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 465s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 465s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 465s Setting up libblas-dev:arm64 (3.12.1-2) ... 465s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 465s Setting up dctrl-tools (2.24-3build3) ... 465s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 465s Setting up libbz2-dev:arm64 (1.0.8-6) ... 465s Setting up libpcre2-dev:arm64 (10.45-1) ... 465s Setting up libpng-dev:arm64 (1.6.47-1) ... 465s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 465s Setting up pkgconf:arm64 (1.8.1-4) ... 465s Setting up liblapack-dev:arm64 (3.12.1-2) ... 465s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 465s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 465s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 465s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 465s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 465s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 465s Setting up cpp-14 (14.2.0-17ubuntu3) ... 465s Setting up cpp (4:14.2.0-1ubuntu1) ... 465s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 465s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 465s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 465s Setting up gcc-14 (14.2.0-17ubuntu3) ... 465s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 465s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 465s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 465s Setting up g++-14 (14.2.0-17ubuntu3) ... 465s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 465s Setting up gcc (4:14.2.0-1ubuntu1) ... 465s Setting up g++ (4:14.2.0-1ubuntu1) ... 465s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 465s Setting up build-essential (12.10ubuntu1) ... 465s Setting up gfortran (4:14.2.0-1ubuntu1) ... 465s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 465s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 465s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 465s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 465s Setting up r-base-dev (4.4.3-1) ... 465s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 465s Processing triggers for libc-bin (2.41-1ubuntu2) ... 465s Processing triggers for man-db (2.13.0-1) ... 466s Processing triggers for install-info (7.1.1-1) ... 467s autopkgtest [15:41:05]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 467s autopkgtest [15:41:05]: test pkg-r-autopkgtest: [----------------------- 468s Test: Try to load the R library intervals 468s 468s R version 4.4.3 (2025-02-28) -- "Trophy Case" 468s Copyright (C) 2025 The R Foundation for Statistical Computing 468s Platform: aarch64-unknown-linux-gnu 468s 468s R is free software and comes with ABSOLUTELY NO WARRANTY. 468s You are welcome to redistribute it under certain conditions. 468s Type 'license()' or 'licence()' for distribution details. 468s 468s R is a collaborative project with many contributors. 468s Type 'contributors()' for more information and 468s 'citation()' on how to cite R or R packages in publications. 468s 468s Type 'demo()' for some demos, 'help()' for on-line help, or 468s 'help.start()' for an HTML browser interface to help. 468s Type 'q()' to quit R. 468s 468s > library('intervals') 468s > 468s > 468s Other tests are currently unsupported! 468s They will be progressively added. 468s autopkgtest [15:41:06]: test pkg-r-autopkgtest: -----------------------] 469s autopkgtest [15:41:07]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 469s pkg-r-autopkgtest PASS 470s autopkgtest [15:41:08]: @@@@@@@@@@@@@@@@@@@@ summary 470s run-unit-test PASS 470s pkg-r-autopkgtest PASS 488s nova [W] Using flock in prodstack6-arm64 488s flock: timeout while waiting to get lock 488s Creating nova instance adt-plucky-arm64-r-cran-intervals-20250315-153318-juju-7f2275-prod-proposed-migration-environment-15-5b4db3df-4f5c-4279-9a44-d49e8834b7d6 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 488s nova [W] Timed out waiting for 3ed0fbbe-581f-4b7a-bb52-5454627ae6b8 to get deleted.