0s autopkgtest [15:31:56]: starting date and time: 2025-03-15 15:31:56+0000 0s autopkgtest [15:31:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:31:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tc_txkp8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-hexbin --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-24.secgroup --name adt-plucky-arm64-r-cran-hexbin-20250315-153156-juju-7f2275-prod-proposed-migration-environment-2-fe5ad473-f33d-4263-9fa4-64572449b0ab --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 171s autopkgtest [15:34:47]: testbed dpkg architecture: arm64 171s autopkgtest [15:34:47]: testbed apt version: 2.9.33 172s autopkgtest [15:34:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 172s autopkgtest [15:34:48]: testbed release detected to be: None 173s autopkgtest [15:34:49]: updating testbed package index (apt update) 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 173s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 173s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 174s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 174s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 174s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 174s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 174s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 174s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 174s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 174s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 174s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 174s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 174s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 175s Fetched 1094 kB in 1s (742 kB/s) 175s Reading package lists... 176s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Calculating upgrade... 177s Calculating upgrade... 178s The following packages will be upgraded: 178s python3-jinja2 strace 178s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 608 kB of archives. 178s After this operation, 11.3 kB of additional disk space will be used. 178s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 179s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 179s Fetched 608 kB in 1s (674 kB/s) 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 179s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 179s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 179s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 179s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 180s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 180s Setting up strace (6.13+ds-1ubuntu1) ... 180s Processing triggers for man-db (2.13.0-1) ... 180s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Solving dependencies... 182s The following packages will be REMOVED: 182s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 182s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 182s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 182s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 182s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 182s After this operation, 267 MB disk space will be freed. 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 182s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 182s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 182s Removing libpython3.12t64:arm64 (3.12.9-1) ... 182s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 182s Removing libnsl2:arm64 (1.3.0-3build3) ... 182s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 182s Removing libunwind8:arm64 (1.6.2-3.1) ... 182s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 183s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 184s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 184s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 184s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 184s /etc/kernel/postrm.d/initramfs-tools: 184s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 184s /etc/kernel/postrm.d/zz-flash-kernel: 184s flash-kernel: Kernel 6.11.0-8-generic has been removed. 184s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 185s /etc/kernel/postrm.d/zz-update-grub: 185s Sourcing file `/etc/default/grub' 185s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 185s Generating grub configuration file ... 185s Found linux image: /boot/vmlinuz-6.14.0-10-generic 185s Found initrd image: /boot/initrd.img-6.14.0-10-generic 185s Warning: os-prober will not be executed to detect other bootable partitions. 185s Systems on them will not be added to the GRUB boot configuration. 185s Check GRUB_DISABLE_OS_PROBER documentation entry. 185s Adding boot menu entry for UEFI Firmware Settings ... 185s done 185s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 186s Processing triggers for libc-bin (2.41-1ubuntu1) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 186s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 186s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 186s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 186s autopkgtest [15:35:02]: upgrading testbed (apt dist-upgrade and autopurge) 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 188s Entering ResolveByKeep 188s 188s Calculating upgrade... 189s The following packages will be upgraded: 189s libc-bin libc-dev-bin libc6 libc6-dev locales 189s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 9530 kB of archives. 189s After this operation, 0 B of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 190s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 190s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 193s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 193s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 197s Preconfiguring packages ... 197s Fetched 9530 kB in 8s (1247 kB/s) 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 197s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up libc6:arm64 (2.41-1ubuntu2) ... 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 198s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 198s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Setting up libc-bin (2.41-1ubuntu2) ... 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 198s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 198s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Setting up locales (2.41-1ubuntu2) ... 199s Generating locales (this might take a while)... 201s en_US.UTF-8... done 201s Generation complete. 201s Setting up libc-dev-bin (2.41-1ubuntu2) ... 201s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 201s Processing triggers for man-db (2.13.0-1) ... 202s Processing triggers for systemd (257.3-1ubuntu3) ... 202s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 204s Solving dependencies... 204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s autopkgtest [15:35:20]: rebooting testbed after setup commands that affected boot 228s autopkgtest [15:35:44]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 231s autopkgtest [15:35:47]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-hexbin 234s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-hexbin 1.28.5-1 (dsc) [2156 B] 234s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-hexbin 1.28.5-1 (tar) [1195 kB] 234s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-hexbin 1.28.5-1 (diff) [3108 B] 234s gpgv: Signature made Tue Jan 28 00:21:54 2025 UTC 234s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 234s gpgv: issuer "plessy@debian.org" 234s gpgv: Can't check signature: No public key 234s dpkg-source: warning: cannot verify inline signature for ./r-cran-hexbin_1.28.5-1.dsc: no acceptable signature found 234s autopkgtest [15:35:50]: testing package r-cran-hexbin version 1.28.5-1 235s autopkgtest [15:35:51]: build not needed 236s autopkgtest [15:35:52]: test run-unit-test: preparing testbed 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 237s Starting pkgProblemResolver with broken count: 0 237s Starting 2 pkgProblemResolver with broken count: 0 237s Done 238s The following NEW packages will be installed: 238s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 238s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 238s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 238s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 238s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 238s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 238s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 238s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 238s libxft2 libxrender1 libxss1 libxt6t64 node-normalize.css r-base-core 238s r-bioc-affy r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics r-bioc-limma 238s r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager r-cran-evaluate 238s r-cran-hexbin r-cran-highr r-cran-knitr r-cran-lattice r-cran-statmod 238s r-cran-xfun r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 238s 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 238s Need to get 60.5 MB of archives. 238s After this operation, 151 MB of additional disk space will be used. 238s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 239s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 240s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 240s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 240s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 240s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 240s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 242s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 242s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 242s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 242s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 242s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 242s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 243s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 243s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 243s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 243s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 243s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 243s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 244s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 244s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 244s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 245s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 245s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 245s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 245s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 246s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 246s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 249s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 249s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 249s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 249s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 250s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 250s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 250s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 250s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 250s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 250s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 250s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 250s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 250s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 251s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 251s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 251s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 251s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 252s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 252s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 252s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 252s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 252s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 252s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 276s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 276s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 278s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 279s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 279s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affyio arm64 1.76.0-2 [89.1 kB] 279s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 279s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-preprocesscore arm64 1.68.0+ds-2 [152 kB] 279s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affy arm64 1.84.0-2 [2020 kB] 281s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 281s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 282s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 283s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 284s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hexbin arm64 1.28.5-1 [1580 kB] 285s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 286s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 286s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 286s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 292s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 293s Preconfiguring packages ... 293s Fetched 60.5 MB in 55s (1104 kB/s) 293s Selecting previously unselected package fonts-dejavu-mono. 294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 294s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 294s Unpacking fonts-dejavu-mono (2.37-8) ... 294s Selecting previously unselected package fonts-dejavu-core. 294s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 294s Unpacking fonts-dejavu-core (2.37-8) ... 294s Selecting previously unselected package fontconfig-config. 294s Preparing to unpack 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(1.18.2-2) ... 295s Selecting previously unselected package libdatrie1:arm64. 295s Preparing to unpack .../13-libdatrie1_0.2.13-3build1_arm64.deb ... 295s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 295s Selecting previously unselected package libdeflate0:arm64. 295s Preparing to unpack .../14-libdeflate0_1.23-1_arm64.deb ... 295s Unpacking libdeflate0:arm64 (1.23-1) ... 295s Selecting previously unselected package libgfortran5:arm64. 295s Preparing to unpack .../15-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 295s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 295s Selecting previously unselected package libgomp1:arm64. 295s Preparing to unpack .../16-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 295s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 295s Selecting previously unselected package libgraphite2-3:arm64. 295s Preparing to unpack .../17-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 295s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 295s Selecting previously unselected package libharfbuzz0b:arm64. 295s Preparing to unpack .../18-libharfbuzz0b_10.2.0-1_arm64.deb ... 295s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 295s Selecting previously unselected package x11-common. 295s Preparing to unpack .../19-x11-common_1%3a7.7+23ubuntu3_all.deb ... 295s Unpacking x11-common (1:7.7+23ubuntu3) ... 295s Selecting previously unselected package libice6:arm64. 295s Preparing to unpack .../20-libice6_2%3a1.1.1-1_arm64.deb ... 295s Unpacking libice6:arm64 (2:1.1.1-1) ... 295s Selecting previously unselected package libjpeg-turbo8:arm64. 295s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 295s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 295s Selecting previously unselected package libjpeg8:arm64. 295s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_arm64.deb ... 295s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 295s Selecting previously unselected package libjs-bootstrap. 295s Preparing to unpack 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.../28-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 296s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 296s Selecting previously unselected package libthai-data. 296s Preparing to unpack .../29-libthai-data_0.1.29-2build1_all.deb ... 296s Unpacking libthai-data (0.1.29-2build1) ... 296s Selecting previously unselected package libthai0:arm64. 296s Preparing to unpack .../30-libthai0_0.1.29-2build1_arm64.deb ... 296s Unpacking libthai0:arm64 (0.1.29-2build1) ... 296s Selecting previously unselected package libpango-1.0-0:arm64. 296s Preparing to unpack .../31-libpango-1.0-0_1.56.2-1_arm64.deb ... 296s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 296s Selecting previously unselected package libpangoft2-1.0-0:arm64. 296s Preparing to unpack .../32-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 296s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 296s Selecting previously unselected package libpangocairo-1.0-0:arm64. 296s Preparing to unpack .../33-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 296s 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296s Preparing to unpack .../39-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 296s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 296s Selecting previously unselected package libwebp7:arm64. 296s Preparing to unpack .../40-libwebp7_1.5.0-0.1_arm64.deb ... 296s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 296s Selecting previously unselected package libtiff6:arm64. 296s Preparing to unpack .../41-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 296s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 296s Selecting previously unselected package libxft2:arm64. 297s Preparing to unpack .../42-libxft2_2.3.6-1build1_arm64.deb ... 297s Unpacking libxft2:arm64 (2.3.6-1build1) ... 297s Selecting previously unselected package libxss1:arm64. 297s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build3_arm64.deb ... 297s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 297s Selecting previously unselected package libtk8.6:arm64. 297s Preparing to unpack .../44-libtk8.6_8.6.16-1_arm64.deb ... 297s Unpacking libtk8.6:arm64 (8.6.16-1) ... 297s Selecting previously unselected package libxt6t64:arm64. 297s Preparing to unpack .../45-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 297s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 297s Selecting previously unselected package node-normalize.css. 297s Preparing to unpack .../46-node-normalize.css_8.0.1-5_all.deb ... 297s Unpacking node-normalize.css (8.0.1-5) ... 297s Selecting previously unselected package zip. 297s Preparing to unpack .../47-zip_3.0-14ubuntu2_arm64.deb ... 297s Unpacking zip (3.0-14ubuntu2) ... 297s Selecting previously unselected package unzip. 297s Preparing to unpack .../48-unzip_6.0-28ubuntu6_arm64.deb ... 297s Unpacking unzip (6.0-28ubuntu6) ... 297s Selecting previously unselected package xdg-utils. 297s Preparing to unpack .../49-xdg-utils_1.2.1-2ubuntu1_all.deb ... 297s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 297s Selecting previously unselected package r-base-core. 297s Preparing to unpack .../50-r-base-core_4.4.3-1_arm64.deb ... 297s Unpacking r-base-core (4.4.3-1) ... 297s Selecting previously unselected package r-bioc-biocgenerics. 297s Preparing to unpack .../51-r-bioc-biocgenerics_0.52.0-2_all.deb ... 297s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 297s Selecting previously unselected package r-bioc-biobase. 297s Preparing to unpack .../52-r-bioc-biobase_2.66.0-2_arm64.deb ... 297s Unpacking r-bioc-biobase (2.66.0-2) ... 297s Selecting previously unselected package zlib1g-dev:arm64. 297s Preparing to unpack .../53-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 297s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 297s Selecting previously unselected package r-bioc-zlibbioc. 297s Preparing to unpack .../54-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 297s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 297s Selecting previously unselected package r-bioc-affyio. 297s Preparing to unpack .../55-r-bioc-affyio_1.76.0-2_arm64.deb ... 297s Unpacking r-bioc-affyio (1.76.0-2) ... 297s Selecting previously unselected package r-cran-biocmanager. 297s Preparing to unpack .../56-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 297s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 297s Selecting previously unselected package r-bioc-preprocesscore. 297s Preparing to unpack .../57-r-bioc-preprocesscore_1.68.0+ds-2_arm64.deb ... 297s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 297s Selecting previously unselected package r-bioc-affy. 297s Preparing to unpack .../58-r-bioc-affy_1.84.0-2_arm64.deb ... 297s Unpacking r-bioc-affy (1.84.0-2) ... 297s Selecting previously unselected package r-cran-statmod. 297s Preparing to unpack .../59-r-cran-statmod_1.5.0-1_arm64.deb ... 297s Unpacking r-cran-statmod (1.5.0-1) ... 298s Selecting previously unselected package r-bioc-limma. 298s Preparing to unpack .../60-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ... 298s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 298s Selecting previously unselected package r-cran-evaluate. 298s Preparing to unpack .../61-r-cran-evaluate_1.0.3-1_all.deb ... 298s Unpacking r-cran-evaluate (1.0.3-1) ... 298s Selecting previously unselected package r-cran-lattice. 298s Preparing to unpack .../62-r-cran-lattice_0.22-6-1_arm64.deb ... 298s Unpacking r-cran-lattice (0.22-6-1) ... 298s Selecting previously unselected package r-cran-hexbin. 298s Preparing to unpack .../63-r-cran-hexbin_1.28.5-1_arm64.deb ... 298s Unpacking r-cran-hexbin (1.28.5-1) ... 298s Selecting previously unselected package r-cran-xfun. 298s Preparing to unpack .../64-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 298s Unpacking r-cran-xfun (0.51+dfsg-1) ... 298s Selecting previously unselected package r-cran-highr. 298s Preparing to unpack .../65-r-cran-highr_0.11+dfsg-1_all.deb ... 298s Unpacking r-cran-highr (0.11+dfsg-1) ... 298s Selecting previously unselected package r-cran-yaml. 298s Preparing to unpack .../66-r-cran-yaml_2.3.10-1_arm64.deb ... 298s Unpacking r-cran-yaml (2.3.10-1) ... 298s Selecting previously unselected package libjs-mathjax. 298s Preparing to unpack .../67-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 298s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 298s Selecting previously unselected package r-cran-knitr. 299s Preparing to unpack .../68-r-cran-knitr_1.49+dfsg-1_all.deb ... 299s Unpacking r-cran-knitr (1.49+dfsg-1) ... 299s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 299s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 299s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 299s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 299s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 299s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 299s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 299s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 299s Setting up libxcb-render0:arm64 (1.17.0-2) ... 299s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 299s Setting up unzip (6.0-28ubuntu6) ... 299s Setting up x11-common (1:7.7+23ubuntu3) ... 299s Setting up libdeflate0:arm64 (1.23-1) ... 299s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 299s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 299s Setting up zip (3.0-14ubuntu2) ... 299s Setting up libblas3:arm64 (3.12.1-2) ... 299s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 299s Setting up fonts-dejavu-mono (2.37-8) ... 299s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 299s Setting up fonts-dejavu-core (2.37-8) ... 299s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 299s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 299s Setting up libwebp7:arm64 (1.5.0-0.1) ... 299s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 299s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 299s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 299s Setting up libthai-data (0.1.29-2build1) ... 299s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 299s Setting up libpaper2:arm64 (2.2.5-0.3) ... 299s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 299s Setting up node-normalize.css (8.0.1-5) ... 299s Setting up xdg-utils (1.2.1-2ubuntu1) ... 299s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 299s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 299s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 299s Setting up libice6:arm64 (2:1.1.1-1) ... 299s Setting up liblapack3:arm64 (3.12.1-2) ... 299s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 299s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 299s Setting up libpaper-utils (2.2.5-0.3) ... 299s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 299s Setting up libthai0:arm64 (0.1.29-2build1) ... 299s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 299s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 299s Setting up libsm6:arm64 (2:1.2.4-1) ... 299s Setting up fontconfig (2.15.0-2ubuntu1) ... 301s Regenerating fonts cache... done. 301s Setting up libxft2:arm64 (2.3.6-1build1) ... 301s Setting up libtk8.6:arm64 (8.6.16-1) ... 301s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 301s Setting up libcairo2:arm64 (1.18.2-2) ... 301s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 301s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 301s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 301s Setting up r-base-core (4.4.3-1) ... 302s Creating config file /etc/R/Renviron with new version 302s Setting up r-cran-lattice (0.22-6-1) ... 302s Setting up r-cran-hexbin (1.28.5-1) ... 302s Setting up r-cran-statmod (1.5.0-1) ... 302s Setting up r-bioc-biocgenerics (0.52.0-2) ... 302s Setting up r-cran-xfun (0.51+dfsg-1) ... 302s Setting up r-cran-yaml (2.3.10-1) ... 302s Setting up r-cran-evaluate (1.0.3-1) ... 302s Setting up r-cran-highr (0.11+dfsg-1) ... 302s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 302s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 302s Setting up r-bioc-biobase (2.66.0-2) ... 302s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 302s Setting up r-cran-knitr (1.49+dfsg-1) ... 302s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 302s Setting up r-bioc-affyio (1.76.0-2) ... 302s Setting up r-bioc-affy (1.84.0-2) ... 302s Processing triggers for libc-bin (2.41-1ubuntu2) ... 302s Processing triggers for man-db (2.13.0-1) ... 303s Processing triggers for install-info (7.1.1-1) ... 304s autopkgtest [15:37:00]: test run-unit-test: [----------------------- 305s BEGIN TEST hdiffplot.R 305s 305s R version 4.4.3 (2025-02-28) -- "Trophy Case" 305s Copyright (C) 2025 The R Foundation for Statistical Computing 305s Platform: aarch64-unknown-linux-gnu 305s 305s R is free software and comes with ABSOLUTELY NO WARRANTY. 305s You are welcome to redistribute it under certain conditions. 305s Type 'license()' or 'licence()' for distribution details. 305s 305s R is a collaborative project with many contributors. 305s Type 'contributors()' for more information and 305s 'citation()' on how to cite R or R packages in publications. 305s 305s Type 'demo()' for some demos, 'help()' for on-line help, or 305s 'help.start()' for an HTML browser interface to help. 305s Type 'q()' to quit R. 305s 305s > library(hexbin) 305s > 305s > if(R.version$major != "1" || as.numeric(R.version$minor) >= 7) 305s + RNGversion("1.6") 305s > set.seed(213) 305s > x1 <- rnorm(10000) 305s > y1 <- rnorm(10000) 305s > 305s > x2 <- rnorm(10000,mean = .3) 305s Warning messages: 305s 1: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 305s buggy version of Kinderman-Ramage generator used 305s 2: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 305s non-uniform 'Rounding' sampler used 305s 3: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 305s RNGkind: Marsaglia-Multicarry has poor statistical properties 305s > y2 <- rnorm(10000,mean = .3) 305s > 305s > rx <- range(x1,x2) 305s > ry <- range(y1,y2) 305s > 305s > str(bin1 <- hexbin(x1,y1, xbnds = rx, ybnds = ry)) 305s Formal class 'hexbin' [package "hexbin"] with 16 slots 305s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 305s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 305s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 305s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 305s ..@ xbins : num 30 305s ..@ shape : num 1 305s ..@ xbnds : num [1:2] -3.8 4.3 305s ..@ ybnds : num [1:2] -3.71 4.17 305s ..@ dimen : num [1:2] 36 31 305s ..@ n : int 10000 305s ..@ ncells: int 535 305s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 305s ..@ xlab : chr "x1" 305s ..@ ylab : chr "y1" 305s ..@ cID : NULL 305s ..@ cAtt : int(0) 305s > str(bin2 <- hexbin(x2,y2, xbnds = rx, ybnds = ry)) 305s Formal class 'hexbin' [package "hexbin"] with 16 slots 305s ..@ cell : int [1:545] 41 51 75 76 104 107 110 114 136 138 ... 305s ..@ count : int [1:545] 1 1 1 1 1 2 1 1 2 1 ... 305s ..@ xcm : num [1:545] -1.141 1.445 -0.493 -0.324 -0.995 ... 305s ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ... 305s ..@ xbins : num 30 305s ..@ shape : num 1 305s ..@ xbnds : num [1:2] -3.8 4.3 305s ..@ ybnds : num [1:2] -3.71 4.17 305s ..@ dimen : num [1:2] 36 31 305s ..@ n : int 10000 305s ..@ ncells: int 545 305s ..@ call : language hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 305s ..@ xlab : chr "x2" 305s ..@ ylab : chr "y2" 305s ..@ cID : NULL 305s ..@ cAtt : int(0) 305s > 305s > str(erode(bin1)) 305s Formal class 'erodebin' [package "hexbin"] with 19 slots 305s ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ... 305s ..@ cdfcut: num 0.5 305s ..@ erode : int [1:71] 12 35 34 57 52 4 30 101 138 150 ... 305s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 305s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 305s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 305s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 305s ..@ xbins : num 30 305s ..@ shape : num 1 305s ..@ xbnds : num [1:2] -3.8 4.3 305s ..@ ybnds : num [1:2] -3.71 4.17 305s ..@ dimen : num [1:2] 36 31 305s ..@ n : int 10000 305s ..@ ncells: int 535 305s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 305s ..@ xlab : chr "x1" 305s ..@ ylab : chr "y1" 305s ..@ cID : NULL 305s ..@ cAtt : int(0) 305s > 305s > str(smbin1 <- smooth.hexbin(bin1)) 305s Formal class 'smoothbin' [package "hexbin"] with 17 slots 305s ..@ wts : num [1:3] 48 4 1 305s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 305s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 305s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 305s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 305s ..@ xbins : num 34 305s ..@ shape : num 1 305s ..@ xbnds : num [1:2] -4.34 4.84 305s ..@ ybnds : num [1:2] -4.23 4.7 305s ..@ dimen : num [1:2] 40 35 305s ..@ n : int 10000 305s ..@ ncells: int 535 305s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 305s ..@ xlab : chr "x1" 305s ..@ ylab : chr "y1" 305s ..@ cID : NULL 305s ..@ cAtt : int(0) 305s > (smbin2 <- smooth.hexbin(bin2)) 305s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 305s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 305s > 305s > str(erodebin1 <- erode.hexbin(smbin1)) 305s Formal class 'erodebin' [package "hexbin"] with 19 slots 305s ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ... 305s ..@ cdfcut: num 0.5 305s ..@ erode : int [1:73] 11 35 95 100 117 88 6 39 167 232 ... 305s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 305s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 305s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 305s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 305s ..@ xbins : num 34 305s ..@ shape : num 1 305s ..@ xbnds : num [1:2] -4.34 4.84 305s ..@ ybnds : num [1:2] -4.23 4.7 305s ..@ dimen : num [1:2] 40 35 305s ..@ n : int 10000 305s ..@ ncells: int 535 305s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 305s ..@ xlab : chr "x1" 305s ..@ ylab : chr "y1" 305s ..@ cID : NULL 305s ..@ cAtt : int(0) 305s > (erodebin2 <- erode.hexbin(smbin2)) 305s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 305s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 305s > 305s > if(FALSE)## does not work -- what funny stuff is hdiffplot() doing??? 305s + par(mfrow = c(2,1)) 305s > 305s > if(exists("hdiffplot", mode="function")) { ## not yet in new hexbin 305s + hdiffplot(bin1,bin2, main = "Original N(0,*) Random bins") 305s + 305s + hdiffplot(smbin1,smbin2, main = "smooth.hexbin() smoothed bins") 305s + 305s + plot.new() 305s + hdiffplot(erodebin1,erodebin2, main = "erode.hexbin()d smoothed bins") 305s + }# not yet 305s > 305s BEGIN TEST hray.R 305s 305s R version 4.4.3 (2025-02-28) -- "Trophy Case" 305s Copyright (C) 2025 The R Foundation for Statistical Computing 305s Platform: aarch64-unknown-linux-gnu 305s 305s R is free software and comes with ABSOLUTELY NO WARRANTY. 305s You are welcome to redistribute it under certain conditions. 305s Type 'license()' or 'licence()' for distribution details. 305s 305s R is a collaborative project with many contributors. 305s Type 'contributors()' for more information and 305s 'citation()' on how to cite R or R packages in publications. 305s 305s Type 'demo()' for some demos, 'help()' for on-line help, or 305s 'help.start()' for an HTML browser interface to help. 305s Type 'q()' to quit R. 305s 305s > library(hexbin) 306s > 306s > set.seed(572) 306s > 306s > x <- rnorm(100) 306s > y <- rnorm(100) 306s > val <- rnorm(100) 306s > inc <- abs(rnorm(100,sd = .3)) 306s > loB <- val-inc 306s > hiB <- val+inc 306s > 306s > if(exists("hray", mode="function")) { # 'real soon now' 306s + 306s + ## no confidence bounds 306s + plot(x,y,type = 'n') 306s + hray(x,y,val) 306s + 306s + ## confidence bounds 306s + plot(x,y,type = 'n') 306s + hray(x,y,val, lo = loB, hi = hiB) 306s + 306s + ## clockwise orientation 306s + plot(x,y,type = 'n') 306s + hray(x,y,val, loB, hiB, clockwise = TRUE) 306s + 306s + ## no tics and small filled dots 306s + plot(x,y,type = 'n') 306s + hray(x,y,val, loB, hiB, ticlength = FALSE, 306s + dotside = 20, dotlength = .025, dotden = -1) 306s + 306s + } 306s > 306s BEGIN TEST large.R 306s 306s R version 4.4.3 (2025-02-28) -- "Trophy Case" 306s Copyright (C) 2025 The R Foundation for Statistical Computing 306s Platform: aarch64-unknown-linux-gnu 306s 306s R is free software and comes with ABSOLUTELY NO WARRANTY. 306s You are welcome to redistribute it under certain conditions. 306s Type 'license()' or 'licence()' for distribution details. 306s 306s R is a collaborative project with many contributors. 306s Type 'contributors()' for more information and 306s 'citation()' on how to cite R or R packages in publications. 306s 306s Type 'demo()' for some demos, 'help()' for on-line help, or 306s 'help.start()' for an HTML browser interface to help. 306s Type 'q()' to quit R. 306s 306s > library(hexbin) 306s > 306s > if(FALSE) { ## the following is still quite a bit from working/useful : 306s + 306s + ## what should that do? set a palette? 306s + rgb <- matrix(c( 306s + 15,15,15, 306s + 306s + 0, 0, 0, 306s + 1, 9,15, 306s + 9,15, 9, 306s + 15, 9, 9, 306s + 306s + 0, 0, 0, 306s + 0, 0, 0, 306s + 0, 0, 0, 306s + 0, 0, 0, 306s + 0, 0, 0, 306s + 0, 0, 0, 306s + 306s + 9, 9, 9, 306s + 0, 2, 7, 306s + 0, 7, 1, 306s + 8, 1, 1, 306s + 306s + 15, 2, 2, 306s + 11, 1, 1, 306s + 8, 1, 1, 306s + 5, 1, 1, 306s + 5, 1, 1, 306s + 15,15,15), ncol = 3, byrow = TRUE) 306s + 306s + ##ps.options(rasters=600,color=rgb/15,background=2) 306s + ##ps.options(color=rgb/15,background=2) 306s + postscript("large.ps",width = 10,height = 7.5) 306s + 306s + plot.hexbin(ans.25mil, style = "nest", lcex = .9) 306s + 306s + }## FALSE, i.e. nothing done 306s > 306s BEGIN TEST viewp-ex.R 306s 306s R version 4.4.3 (2025-02-28) -- "Trophy Case" 306s Copyright (C) 2025 The R Foundation for Statistical Computing 306s Platform: aarch64-unknown-linux-gnu 306s 306s R is free software and comes with ABSOLUTELY NO WARRANTY. 306s You are welcome to redistribute it under certain conditions. 306s Type 'license()' or 'licence()' for distribution details. 306s 306s R is a collaborative project with many contributors. 306s Type 'contributors()' for more information and 306s 'citation()' on how to cite R or R packages in publications. 306s 306s Type 'demo()' for some demos, 'help()' for on-line help, or 306s 'help.start()' for an HTML browser interface to help. 306s Type 'q()' to quit R. 306s 306s > library(hexbin) 306s > 306s > ## a variation on Nicholas' post to bioconductor & example(hexViewport) 306s > set.seed(545) 306s > x <- rnorm(2^15) 306s > y <- 3*x - .2*x^2 + rnorm(2^15) 306s > hbin <- hexbin(x,y) 306s > 306s > ## 306s > hp <- hexViewport(hbin, newpage = TRUE) 306s > pushHexport(hp) 306s > library("grid") 306s > grid.rect() 306s > grid.xaxis() 306s > grid.yaxis() 306s > grid.hexagons(hbin, style = "centroid") 306s > hloess <- loess(y ~ x, data = hcell2xy(hbin), weights = hbin @ count) 306s > xx <- seq(hbin@xbnds[1], hbin@xbnds[2], length = 500) 306s > grid.lines(xx, predict(hloess, xx), 306s + gp = gpar(col = 'red', lwd = 2), default.units = "native") 306s > popViewport() 306s > 307s autopkgtest [15:37:03]: test run-unit-test: -----------------------] 307s autopkgtest [15:37:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 307s run-unit-test PASS 308s autopkgtest [15:37:04]: test pkg-r-autopkgtest: preparing testbed 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 308s Starting pkgProblemResolver with broken count: 0 309s Starting 2 pkgProblemResolver with broken count: 0 309s Done 309s The following NEW packages will be installed: 309s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 309s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 309s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 309s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 309s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 309s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 309s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 309s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 309s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 309s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 309s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. 309s Need to get 91.8 MB of archives. 309s After this operation, 333 MB of additional disk space will be used. 309s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 310s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 310s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 322s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 322s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 322s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 322s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 322s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 322s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 325s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 326s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 330s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 331s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 333s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 336s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 360s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 361s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 361s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 361s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 363s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 380s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 380s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 380s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 380s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 380s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 380s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 381s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 400s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 400s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 400s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 400s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 400s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 400s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 400s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 400s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 420s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 421s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 421s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 421s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 428s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 429s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 429s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 430s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 430s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 431s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 431s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 432s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 432s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 432s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 432s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 432s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 433s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 433s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 433s Fetched 91.8 MB in 2min 3s (744 kB/s) 433s Selecting previously unselected package libisl23:arm64. 433s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89512 files and directories currently installed.) 433s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 433s Unpacking libisl23:arm64 (0.27-1) ... 433s Selecting previously unselected package libmpc3:arm64. 433s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 433s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 433s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 433s Preparing to unpack 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... 434s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 434s Selecting previously unselected package libasan8:arm64. 434s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ... 434s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 434s Selecting previously unselected package liblsan0:arm64. 434s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 434s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 434s Selecting previously unselected package libtsan2:arm64. 434s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 434s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 434s Selecting previously unselected package libubsan1:arm64. 434s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 434s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 434s Selecting previously unselected package libhwasan0:arm64. 434s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 434s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 434s Selecting previously unselected package libgcc-14-dev:arm64. 434s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 434s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 434s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 434s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 434s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 435s Selecting previously unselected package gcc-14. 435s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 435s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 435s Selecting previously unselected package gcc-aarch64-linux-gnu. 435s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 435s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 435s Selecting previously unselected package gcc. 435s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 435s Unpacking gcc (4:14.2.0-1ubuntu1) ... 435s Selecting previously unselected package libstdc++-14-dev:arm64. 435s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 435s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 435s Selecting previously unselected package g++-14-aarch64-linux-gnu. 435s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 435s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 435s Selecting previously unselected package g++-14. 435s Preparing to unpack .../20-g++-14_14.2.0-17ubuntu3_arm64.deb ... 435s Unpacking g++-14 (14.2.0-17ubuntu3) ... 435s Selecting previously unselected package g++-aarch64-linux-gnu. 435s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 435s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 436s Selecting previously unselected package g++. 436s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 436s Unpacking g++ (4:14.2.0-1ubuntu1) ... 436s Selecting previously unselected package build-essential. 436s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 436s Unpacking build-essential (12.10ubuntu1) ... 436s Selecting previously unselected package dctrl-tools. 436s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 436s Unpacking dctrl-tools (2.24-3build3) ... 436s Selecting previously unselected package libgfortran-14-dev:arm64. 436s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 436s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 436s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 436s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 436s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 436s Selecting previously unselected package gfortran-14. 436s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 436s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 436s Selecting previously unselected package gfortran-aarch64-linux-gnu. 436s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 436s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 436s Selecting previously unselected package gfortran. 436s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 436s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 436s Selecting previously unselected package icu-devtools. 436s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 436s Unpacking icu-devtools (76.1-1ubuntu2) ... 436s Selecting previously unselected package libblas-dev:arm64. 436s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 436s Unpacking libblas-dev:arm64 (3.12.1-2) ... 436s Selecting previously unselected package libbz2-dev:arm64. 436s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 436s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 436s Selecting previously unselected package libdeflate-dev:arm64. 436s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 436s Unpacking libdeflate-dev:arm64 (1.23-1) ... 436s Selecting previously unselected package libicu-dev:arm64. 436s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 436s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 437s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 437s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 437s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 437s Selecting previously unselected package libjpeg8-dev:arm64. 437s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 437s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 437s Selecting previously unselected package libjpeg-dev:arm64. 437s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 437s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 437s Selecting previously unselected package liblapack-dev:arm64. 437s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 437s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 437s Selecting previously unselected package libncurses-dev:arm64. 437s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 437s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 437s Selecting previously unselected package libpcre2-16-0:arm64. 437s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 437s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 437s Selecting previously unselected package libpcre2-32-0:arm64. 437s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 437s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 437s Selecting previously unselected package libpcre2-posix3:arm64. 437s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 437s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 437s Selecting previously unselected package libpcre2-dev:arm64. 437s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 437s Unpacking libpcre2-dev:arm64 (10.45-1) ... 437s Selecting previously unselected package libpkgconf3:arm64. 437s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ... 437s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 437s Selecting previously unselected package libpng-dev:arm64. 437s Preparing to unpack .../45-libpng-dev_1.6.47-1_arm64.deb ... 437s Unpacking libpng-dev:arm64 (1.6.47-1) ... 437s Selecting previously unselected package libreadline-dev:arm64. 437s Preparing to unpack .../46-libreadline-dev_8.2-6_arm64.deb ... 437s Unpacking libreadline-dev:arm64 (8.2-6) ... 437s Selecting previously unselected package liblzma-dev:arm64. 437s Preparing to unpack .../47-liblzma-dev_5.6.4-1_arm64.deb ... 437s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 437s Selecting previously unselected package pkgconf-bin. 437s Preparing to unpack .../48-pkgconf-bin_1.8.1-4_arm64.deb ... 437s Unpacking pkgconf-bin (1.8.1-4) ... 437s Selecting previously unselected package pkgconf:arm64. 437s Preparing to unpack .../49-pkgconf_1.8.1-4_arm64.deb ... 437s Unpacking pkgconf:arm64 (1.8.1-4) ... 437s Selecting previously unselected package libtirpc-dev:arm64. 437s Preparing to unpack .../50-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 437s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 438s Selecting previously unselected package r-base-dev. 438s Preparing to unpack .../51-r-base-dev_4.4.3-1_all.deb ... 438s Unpacking r-base-dev (4.4.3-1) ... 438s Selecting previously unselected package pkg-r-autopkgtest. 438s Preparing to unpack .../52-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 438s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 438s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 438s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 438s Setting up libpng-dev:arm64 (1.6.47-1) ... 438s Setting up libreadline-dev:arm64 (8.2-6) ... 438s Setting up libpcre2-16-0:arm64 (10.45-1) ... 438s Setting up libpcre2-32-0:arm64 (10.45-1) ... 438s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 438s Setting up libpkgconf3:arm64 (1.8.1-4) ... 438s Setting up libmpc3:arm64 (1.3.1-1build2) ... 438s Setting up icu-devtools (76.1-1ubuntu2) ... 438s Setting up pkgconf-bin (1.8.1-4) ... 438s Setting up liblzma-dev:arm64 (5.6.4-1) ... 438s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 438s Setting up libpcre2-posix3:arm64 (10.45-1) ... 438s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 438s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 438s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 438s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 438s Setting up libisl23:arm64 (0.27-1) ... 438s Setting up libdeflate-dev:arm64 (1.23-1) ... 438s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 438s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 438s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 438s Setting up libblas-dev:arm64 (3.12.1-2) ... 438s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 438s Setting up dctrl-tools (2.24-3build3) ... 438s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 438s Setting up libbz2-dev:arm64 (1.0.8-6) ... 438s Setting up libpcre2-dev:arm64 (10.45-1) ... 438s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 438s Setting up pkgconf:arm64 (1.8.1-4) ... 438s Setting up liblapack-dev:arm64 (3.12.1-2) ... 438s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 438s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 438s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 438s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 438s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 438s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 438s Setting up cpp-14 (14.2.0-17ubuntu3) ... 438s Setting up cpp (4:14.2.0-1ubuntu1) ... 438s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 438s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 438s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 438s Setting up gcc-14 (14.2.0-17ubuntu3) ... 438s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 438s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 438s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 438s Setting up g++-14 (14.2.0-17ubuntu3) ... 438s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 438s Setting up gcc (4:14.2.0-1ubuntu1) ... 438s Setting up g++ (4:14.2.0-1ubuntu1) ... 438s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 438s Setting up build-essential (12.10ubuntu1) ... 438s Setting up gfortran (4:14.2.0-1ubuntu1) ... 438s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 438s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 438s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 438s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 438s Setting up r-base-dev (4.4.3-1) ... 438s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 438s Processing triggers for libc-bin (2.41-1ubuntu2) ... 438s Processing triggers for man-db (2.13.0-1) ... 439s Processing triggers for install-info (7.1.1-1) ... 440s autopkgtest [15:39:16]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 440s autopkgtest [15:39:16]: test pkg-r-autopkgtest: [----------------------- 440s Test: Try to load the R library hexbin 440s 440s R version 4.4.3 (2025-02-28) -- "Trophy Case" 440s Copyright (C) 2025 The R Foundation for Statistical Computing 440s Platform: aarch64-unknown-linux-gnu 440s 440s R is free software and comes with ABSOLUTELY NO WARRANTY. 440s You are welcome to redistribute it under certain conditions. 440s Type 'license()' or 'licence()' for distribution details. 440s 440s R is a collaborative project with many contributors. 440s Type 'contributors()' for more information and 440s 'citation()' on how to cite R or R packages in publications. 440s 440s Type 'demo()' for some demos, 'help()' for on-line help, or 440s 'help.start()' for an HTML browser interface to help. 440s Type 'q()' to quit R. 440s 440s > library('hexbin') 440s > 440s > 440s Other tests are currently unsupported! 440s They will be progressively added. 441s autopkgtest [15:39:17]: test pkg-r-autopkgtest: -----------------------] 441s pkg-r-autopkgtest PASS 441s autopkgtest [15:39:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 441s autopkgtest [15:39:17]: @@@@@@@@@@@@@@@@@@@@ summary 441s run-unit-test PASS 441s pkg-r-autopkgtest PASS 459s nova [W] Using flock in prodstack6-arm64 459s Creating nova instance adt-plucky-arm64-r-cran-hexbin-20250315-153156-juju-7f2275-prod-proposed-migration-environment-2-fe5ad473-f33d-4263-9fa4-64572449b0ab from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 459s nova [W] Timed out waiting for bb9c18d0-1c1a-455b-b757-ad32efaba509 to get deleted.