0s autopkgtest [15:31:28]: starting date and time: 2025-03-15 15:31:28+0000 0s autopkgtest [15:31:28]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:31:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ugkzcy03/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-17.secgroup --name adt-plucky-arm64-r-cran-gstat-20250315-153128-juju-7f2275-prod-proposed-migration-environment-2-bee65453-ee77-469f-9c8a-72da07c5e056 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 206s autopkgtest [15:34:54]: testbed dpkg architecture: arm64 206s autopkgtest [15:34:54]: testbed apt version: 2.9.33 207s autopkgtest [15:34:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 207s autopkgtest [15:34:55]: testbed release detected to be: None 208s autopkgtest [15:34:56]: updating testbed package index (apt update) 208s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 208s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 208s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 209s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 209s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 209s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 209s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 209s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 209s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 209s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 209s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 210s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 210s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 210s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 210s Fetched 1094 kB in 2s (660 kB/s) 211s Reading package lists... 211s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Calculating upgrade... 212s Calculating upgrade... 213s The following packages will be upgraded: 213s python3-jinja2 strace 213s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 213s Need to get 608 kB of archives. 213s After this operation, 11.3 kB of additional disk space will be used. 213s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 214s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 214s Fetched 608 kB in 1s (582 kB/s) 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 215s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 215s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 215s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 215s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 215s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 215s Setting up strace (6.13+ds-1ubuntu1) ... 215s Processing triggers for man-db (2.13.0-1) ... 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 217s Solving dependencies... 217s The following packages will be REMOVED: 217s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 217s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 217s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 217s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 217s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 217s After this operation, 267 MB disk space will be freed. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 217s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 217s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 217s Removing libpython3.12t64:arm64 (3.12.9-1) ... 217s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 218s Removing libnsl2:arm64 (1.3.0-3build3) ... 218s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 218s Removing libunwind8:arm64 (1.6.2-3.1) ... 218s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 218s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 220s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 220s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 220s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 220s /etc/kernel/postrm.d/initramfs-tools: 220s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 220s /etc/kernel/postrm.d/zz-flash-kernel: 220s flash-kernel: Kernel 6.11.0-8-generic has been removed. 220s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 221s /etc/kernel/postrm.d/zz-update-grub: 221s Sourcing file `/etc/default/grub' 221s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 221s Generating grub configuration file ... 221s Found linux image: /boot/vmlinuz-6.14.0-10-generic 221s Found initrd image: /boot/initrd.img-6.14.0-10-generic 221s Warning: os-prober will not be executed to detect other bootable partitions. 221s Systems on them will not be added to the GRUB boot configuration. 221s Check GRUB_DISABLE_OS_PROBER documentation entry. 221s Adding boot menu entry for UEFI Firmware Settings ... 221s done 221s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 222s Processing triggers for libc-bin (2.41-1ubuntu1) ... 222s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 222s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 222s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 222s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 222s autopkgtest [15:35:10]: upgrading testbed (apt dist-upgrade and autopurge) 222s Reading package lists... 223s Building dependency tree... 223s Reading state information... 223s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 223s Starting 2 pkgProblemResolver with broken count: 0 223s Done 224s Entering ResolveByKeep 224s 225s Calculating upgrade... 225s The following packages will be upgraded: 225s libc-bin libc-dev-bin libc6 libc6-dev locales 225s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 9530 kB of archives. 225s After this operation, 0 B of additional disk space will be used. 225s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 227s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 227s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 230s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 231s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 236s Preconfiguring packages ... 236s Fetched 9530 kB in 11s (889 kB/s) 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 236s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 236s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 237s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 237s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 237s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 237s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 237s Setting up libc6:arm64 (2.41-1ubuntu2) ... 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 237s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 237s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 237s Setting up libc-bin (2.41-1ubuntu2) ... 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 237s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 237s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 238s Setting up locales (2.41-1ubuntu2) ... 238s Generating locales (this might take a while)... 240s en_US.UTF-8... done 240s Generation complete. 240s Setting up libc-dev-bin (2.41-1ubuntu2) ... 240s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 240s Processing triggers for man-db (2.13.0-1) ... 242s Processing triggers for systemd (257.3-1ubuntu3) ... 242s Reading package lists... 243s Building dependency tree... 243s Reading state information... 243s Starting pkgProblemResolver with broken count: 0 243s Starting 2 pkgProblemResolver with broken count: 0 243s Done 244s Solving dependencies... 244s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 244s autopkgtest [15:35:32]: rebooting testbed after setup commands that affected boot 267s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 274s autopkgtest [15:36:02]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 277s autopkgtest [15:36:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 282s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (dsc) [2317 B] 282s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (tar) [2283 kB] 282s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (diff) [3748 B] 282s gpgv: Signature made Sun Feb 9 23:46:19 2025 UTC 282s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 282s gpgv: issuer "plessy@debian.org" 282s gpgv: Can't check signature: No public key 282s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-1.dsc: no acceptable signature found 282s autopkgtest [15:36:10]: testing package r-cran-gstat version 2.1-3-1 283s autopkgtest [15:36:11]: build not needed 285s autopkgtest [15:36:13]: test run-unit-test: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 286s Starting pkgProblemResolver with broken count: 0 286s Starting 2 pkgProblemResolver with broken count: 0 286s Done 287s The following NEW packages will be installed: 287s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 287s gdal-plugins libabsl20230802 libaec0 libaom3 libarmadillo14 libarpack2t64 287s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 287s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-1 287s libgdal36 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran5 libgif7 287s libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 287s libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 287s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 287s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 287s libminizip1t64 libmysqlclient24 libnetcdf22 libodbc2 libodbcinst2 libogdi4.1 287s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 287s libpaper-utils libpaper2 libpixman-1-0 libpoppler147 libpq5 libproj25 287s libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 287s libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 287s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 287s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 287s libxt6t64 libyuv0 littler mysql-common proj-data r-base-core r-cran-abind 287s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-colorspace 287s r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-fansi 287s r-cran-farver r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply 287s r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gstat r-cran-gtable 287s r-cran-intervals r-cran-isoband r-cran-kernsmooth r-cran-labeling 287s r-cran-lattice r-cran-lifecycle r-cran-listenv r-cran-littler 287s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-matrix 287s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-parallelly r-cran-pillar 287s r-cran-pkgconfig r-cran-pkgkitten r-cran-proxy r-cran-r6 r-cran-raster 287s r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-scales 287s r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam r-cran-stars 287s r-cran-terra r-cran-tibble r-cran-units r-cran-utf8 r-cran-vctrs 287s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xts r-cran-zoo 287s unixodbc-common unzip x11-common xdg-utils zip 287s 0 upgraded, 167 newly installed, 0 to remove and 0 not upgraded. 287s Need to get 171 MB of archives. 287s After this operation, 363 MB of additional disk space will be used. 287s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 288s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 289s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 289s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 289s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 289s Get:6 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-data all 3.10.2+dfsg-1build3 [269 kB] 289s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-plugins arm64 3.10.2+dfsg-1build3 [25.7 kB] 289s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libabsl20230802 arm64 20230802.1-4.2 [491 kB] 290s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 290s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.12.0-1 [1828 kB] 292s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 292s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 292s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 295s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-4 [94.4 kB] 295s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarmadillo14 arm64 1:14.2.3+dfsg-1 [105 kB] 295s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdav1d7 arm64 1.5.1-1 [304 kB] 296s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgav1-1 arm64 0.19.0-3 [572 kB] 296s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 librav1e0.7 arm64 0.7.1-9 [763 kB] 297s Get:19 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1832 kB] 299s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 299s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 299s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libyuv0 arm64 0.0.1904.20250204-1 [159 kB] 299s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libavif16 arm64 1.2.0-1ubuntu1 [115 kB] 299s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 300s Get:25 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 300s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 300s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 300s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 300s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 300s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 300s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcfitsio10t64 arm64 4.5.0-5 [519 kB] 301s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 301s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build5 [146 kB] 301s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 301s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB] 301s Get:36 http://ftpmaster.internal/ubuntu plucky/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [23.1 kB] 301s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB] 301s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos3.13.1 arm64 3.13.1-1 [916 kB] 302s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos-c1t64 arm64 3.13.1-1 [92.2 kB] 302s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.5.1-1 [7924 kB] 311s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 311s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 311s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 311s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 312s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 312s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB] 313s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeotiff5 arm64 1.7.4-1 [58.9 kB] 313s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libgif7 arm64 5.2.2-1ubuntu2 [36.1 kB] 313s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 313s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB] 314s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 315s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.19.7-1 [11.4 kB] 315s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.19.7-1 [8890 B] 315s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.19.7-1 [371 kB] 316s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB] 316s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB] 316s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB] 316s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB] 316s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 316s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libmysqlclient24 arm64 8.4.4-0ubuntu2 [1243 kB] 317s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 317s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 318s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 318s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbc2 arm64 2.3.12-2ubuntu1 [147 kB] 318s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 318s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbcinst2 arm64 2.3.12-2ubuntu1 [30.3 kB] 318s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libogdi4.1 arm64 4.1.1+ds-5 [217 kB] 318s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 319s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libgpgmepp6t64 arm64 1.24.2-1ubuntu2 [119 kB] 319s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 319s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpoppler147 arm64 25.03.0-2 [1154 kB] 320s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.4-1 [142 kB] 320s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 320s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 librttopo1 arm64 1.1.0-4 [190 kB] 321s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB] 322s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build1 [874 kB] 323s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgdal36 arm64 3.10.2+dfsg-1build3 [8893 kB] 333s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 333s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 334s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 334s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 334s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 334s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 334s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 334s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 335s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 335s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 335s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 335s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 335s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 335s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 336s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 336s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 336s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 337s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 337s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB] 337s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 337s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 337s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 338s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 338s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 369s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 369s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 369s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 369s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 371s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB] 371s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 371s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-e1071 arm64 1.7-16-1 [563 kB] 372s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-26-1 [93.3 kB] 372s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB] 373s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 375s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 375s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 378s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 379s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 379s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dotcall64 arm64 1.2-1 [35.9 kB] 379s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 380s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 382s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 382s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 386s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spam arm64 2.11-1-1 [2737 kB] 390s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 391s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-maps arm64 3.4.2.1-1 [2350 kB] 396s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fields arm64 16.3.1-1 [3762 kB] 402s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fnn arm64 1.1.4.1-1 [125 kB] 402s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-globals all 0.16.3-1 [120 kB] 403s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 403s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-parallelly arm64 1.42.0-1 [540 kB] 404s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 405s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 405s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 405s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 407s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 407s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 407s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 409s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 411s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 414s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 418s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 422s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 422s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 422s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 422s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 422s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 423s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 423s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 423s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 425s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 426s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 426s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 426s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 427s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 431s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 432s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-zoo arm64 1.8-13-1 [996 kB] 433s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB] 436s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-s2 arm64 1.1.7-1 [1987 kB] 438s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 438s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sf arm64 1.0-19+dfsg-1 [3247 kB] 442s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 442s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xts arm64 0.14.1-1 [1189 kB] 443s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-intervals arm64 0.15.5-1 [602 kB] 444s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spacetime all 1.3-3-1 [2780 kB] 447s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stars all 0.6-8-1 [4414 kB] 452s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gstat arm64 2.1-3-1 [2331 kB] 455s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 490s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-terra arm64 1.8-29-1 [4100 kB] 497s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-raster arm64 3.6-31-1 [3149 kB] 503s Preconfiguring packages ... 503s Fetched 171 MB in 3min 36s (792 kB/s) 503s Selecting previously unselected package fonts-dejavu-mono. 504s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 504s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 504s Unpacking fonts-dejavu-mono (2.37-8) ... 504s Selecting previously unselected package fonts-dejavu-core. 504s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 504s Unpacking fonts-dejavu-core (2.37-8) ... 504s Selecting previously unselected package fontconfig-config. 504s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 505s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 505s Selecting previously unselected package libfontconfig1:arm64. 505s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 505s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 505s Selecting previously unselected package fontconfig. 505s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 505s Unpacking fontconfig (2.15.0-2ubuntu1) ... 505s Selecting previously unselected package gdal-data. 505s Preparing to unpack .../005-gdal-data_3.10.2+dfsg-1build3_all.deb ... 505s Unpacking gdal-data (3.10.2+dfsg-1build3) ... 505s Selecting previously unselected package gdal-plugins:arm64. 505s Preparing to unpack .../006-gdal-plugins_3.10.2+dfsg-1build3_arm64.deb ... 505s Unpacking gdal-plugins:arm64 (3.10.2+dfsg-1build3) ... 505s Selecting previously unselected package libabsl20230802:arm64. 505s Preparing to unpack .../007-libabsl20230802_20230802.1-4.2_arm64.deb ... 505s Unpacking libabsl20230802:arm64 (20230802.1-4.2) ... 505s Selecting previously unselected package libaec0:arm64. 505s Preparing to unpack .../008-libaec0_1.1.3-1_arm64.deb ... 505s Unpacking libaec0:arm64 (1.1.3-1) ... 505s Selecting previously unselected package libaom3:arm64. 505s Preparing to unpack .../009-libaom3_3.12.0-1_arm64.deb ... 505s Unpacking libaom3:arm64 (3.12.0-1) ... 505s Selecting previously unselected package libblas3:arm64. 505s Preparing to unpack .../010-libblas3_3.12.1-2_arm64.deb ... 505s Unpacking libblas3:arm64 (3.12.1-2) ... 505s Selecting previously unselected package libgfortran5:arm64. 505s Preparing to unpack .../011-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 505s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 505s Selecting previously unselected package liblapack3:arm64. 505s Preparing to unpack .../012-liblapack3_3.12.1-2_arm64.deb ... 505s Unpacking liblapack3:arm64 (3.12.1-2) ... 505s Selecting previously unselected package libarpack2t64:arm64. 505s Preparing to unpack .../013-libarpack2t64_3.9.1-4_arm64.deb ... 505s Unpacking libarpack2t64:arm64 (3.9.1-4) ... 506s Selecting previously unselected package libarmadillo14. 506s Preparing to unpack .../014-libarmadillo14_1%3a14.2.3+dfsg-1_arm64.deb ... 506s Unpacking libarmadillo14 (1:14.2.3+dfsg-1) ... 506s Selecting previously unselected package libdav1d7:arm64. 506s Preparing to unpack .../015-libdav1d7_1.5.1-1_arm64.deb ... 506s Unpacking libdav1d7:arm64 (1.5.1-1) ... 506s Selecting previously unselected package libgav1-1:arm64. 506s Preparing to unpack .../016-libgav1-1_0.19.0-3_arm64.deb ... 506s Unpacking libgav1-1:arm64 (0.19.0-3) ... 506s Selecting previously unselected package librav1e0.7:arm64. 506s Preparing to unpack .../017-librav1e0.7_0.7.1-9_arm64.deb ... 506s Unpacking librav1e0.7:arm64 (0.7.1-9) ... 506s Selecting previously unselected package libsvtav1enc2:arm64. 506s Preparing to unpack .../018-libsvtav1enc2_2.3.0+dfsg-1_arm64.deb ... 506s Unpacking libsvtav1enc2:arm64 (2.3.0+dfsg-1) ... 506s Selecting previously unselected package libjpeg-turbo8:arm64. 506s Preparing to unpack .../019-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 506s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 506s Selecting previously unselected package libjpeg8:arm64. 506s Preparing to unpack .../020-libjpeg8_8c-2ubuntu11_arm64.deb ... 506s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 506s Selecting previously unselected package libyuv0:arm64. 506s Preparing to unpack .../021-libyuv0_0.0.1904.20250204-1_arm64.deb ... 506s Unpacking libyuv0:arm64 (0.0.1904.20250204-1) ... 506s Selecting previously unselected package libavif16:arm64. 506s Preparing to unpack .../022-libavif16_1.2.0-1ubuntu1_arm64.deb ... 506s Unpacking libavif16:arm64 (1.2.0-1ubuntu1) ... 506s Selecting previously unselected package libsnappy1v5:arm64. 506s Preparing to unpack .../023-libsnappy1v5_1.2.1-1_arm64.deb ... 506s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 506s Selecting previously unselected package libblosc1:arm64. 506s Preparing to unpack .../024-libblosc1_1.21.5+ds-1build1_arm64.deb ... 506s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 506s Selecting previously unselected package libpixman-1-0:arm64. 506s Preparing to unpack .../025-libpixman-1-0_0.44.0-3_arm64.deb ... 506s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 506s Selecting previously unselected package libxcb-render0:arm64. 506s Preparing to unpack .../026-libxcb-render0_1.17.0-2_arm64.deb ... 506s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 506s Selecting previously unselected package libxcb-shm0:arm64. 506s Preparing to unpack .../027-libxcb-shm0_1.17.0-2_arm64.deb ... 506s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 506s Selecting previously unselected package libxrender1:arm64. 506s Preparing to unpack .../028-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 506s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 506s Selecting previously unselected package libcairo2:arm64. 506s Preparing to unpack .../029-libcairo2_1.18.2-2_arm64.deb ... 506s Unpacking libcairo2:arm64 (1.18.2-2) ... 507s Selecting previously unselected package libcfitsio10t64:arm64. 507s Preparing to unpack .../030-libcfitsio10t64_4.5.0-5_arm64.deb ... 507s Unpacking libcfitsio10t64:arm64 (4.5.0-5) ... 507s Selecting previously unselected package libdatrie1:arm64. 507s Preparing to unpack .../031-libdatrie1_0.2.13-3build1_arm64.deb ... 507s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 507s Selecting previously unselected package libde265-0:arm64. 507s Preparing to unpack .../032-libde265-0_1.0.15-1build5_arm64.deb ... 507s Unpacking libde265-0:arm64 (1.0.15-1build5) ... 507s Selecting previously unselected package libdeflate0:arm64. 507s Preparing to unpack .../033-libdeflate0_1.23-1_arm64.deb ... 507s Unpacking libdeflate0:arm64 (1.23-1) ... 507s Selecting previously unselected package libfyba0t64:arm64. 507s Preparing to unpack .../034-libfyba0t64_4.1.1-11build1_arm64.deb ... 507s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ... 507s Selecting previously unselected package libminizip1t64:arm64. 507s Preparing to unpack .../035-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 507s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 507s Selecting previously unselected package libfreexl1:arm64. 507s Preparing to unpack .../036-libfreexl1_2.0.0-1build2_arm64.deb ... 507s Unpacking libfreexl1:arm64 (2.0.0-1build2) ... 507s Selecting previously unselected package libgeos3.13.1:arm64. 507s Preparing to unpack .../037-libgeos3.13.1_3.13.1-1_arm64.deb ... 507s Unpacking libgeos3.13.1:arm64 (3.13.1-1) ... 507s Selecting previously unselected package libgeos-c1t64:arm64. 507s Preparing to unpack .../038-libgeos-c1t64_3.13.1-1_arm64.deb ... 507s Unpacking libgeos-c1t64:arm64 (3.13.1-1) ... 507s Selecting previously unselected package proj-data. 507s Preparing to unpack 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libodbcinst2:arm64 (2.3.12-2ubuntu1) ... 508s Selecting previously unselected package libogdi4.1:arm64. 508s Preparing to unpack .../066-libogdi4.1_4.1.1+ds-5_arm64.deb ... 508s Unpacking libogdi4.1:arm64 (4.1.1+ds-5) ... 508s Selecting previously unselected package libopenjp2-7:arm64. 509s Preparing to unpack .../067-libopenjp2-7_2.5.3-2_arm64.deb ... 509s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 509s Selecting previously unselected package libgpgmepp6t64:arm64. 509s Preparing to unpack .../068-libgpgmepp6t64_1.24.2-1ubuntu2_arm64.deb ... 509s Unpacking libgpgmepp6t64:arm64 (1.24.2-1ubuntu2) ... 509s Selecting previously unselected package liblcms2-2:arm64. 509s Preparing to unpack .../069-liblcms2-2_2.16-2_arm64.deb ... 509s Unpacking liblcms2-2:arm64 (2.16-2) ... 509s Selecting previously unselected package libpoppler147:arm64. 509s Preparing to unpack .../070-libpoppler147_25.03.0-2_arm64.deb ... 509s Unpacking libpoppler147:arm64 (25.03.0-2) ... 509s Selecting previously unselected package libpq5:arm64. 509s Preparing to unpack .../071-libpq5_17.4-1_arm64.deb ... 509s Unpacking libpq5:arm64 (17.4-1) ... 509s Selecting previously unselected package libqhull-r8.0:arm64. 509s Preparing to unpack .../072-libqhull-r8.0_2020.2-6build1_arm64.deb ... 509s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 509s Selecting previously unselected package librttopo1:arm64. 509s Preparing to unpack .../073-librttopo1_1.1.0-4_arm64.deb ... 509s Unpacking librttopo1:arm64 (1.1.0-4) ... 509s Selecting previously unselected package libspatialite8t64:arm64. 509s Preparing to unpack .../074-libspatialite8t64_5.1.0-3build1_arm64.deb ... 509s Unpacking libspatialite8t64:arm64 (5.1.0-3build1) ... 509s Selecting previously unselected package libxerces-c3.2t64:arm64. 509s Preparing to unpack .../075-libxerces-c3.2t64_3.2.4+debian-1.3build1_arm64.deb ... 509s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build1) ... 509s Selecting previously unselected package libgdal36:arm64. 509s Preparing to unpack .../076-libgdal36_3.10.2+dfsg-1build3_arm64.deb ... 509s Unpacking libgdal36:arm64 (3.10.2+dfsg-1build3) ... 509s Selecting previously unselected package libgomp1:arm64. 509s Preparing to unpack .../077-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 509s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 509s Selecting previously unselected package libgraphite2-3:arm64. 509s Preparing to unpack .../078-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 509s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 509s Selecting previously unselected package libharfbuzz0b:arm64. 509s Preparing to unpack .../079-libharfbuzz0b_10.2.0-1_arm64.deb ... 509s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 510s Selecting previously unselected package x11-common. 510s Preparing to unpack .../080-x11-common_1%3a7.7+23ubuntu3_all.deb ... 510s Unpacking x11-common (1:7.7+23ubuntu3) ... 510s Selecting previously unselected package libice6:arm64. 510s Preparing to unpack .../081-libice6_2%3a1.1.1-1_arm64.deb ... 510s Unpacking libice6:arm64 (2:1.1.1-1) ... 510s Selecting previously unselected package libthai-data. 510s Preparing to unpack .../082-libthai-data_0.1.29-2build1_all.deb ... 510s Unpacking libthai-data (0.1.29-2build1) ... 510s Selecting previously unselected package libthai0:arm64. 510s Preparing to unpack .../083-libthai0_0.1.29-2build1_arm64.deb ... 510s Unpacking libthai0:arm64 (0.1.29-2build1) ... 510s Selecting previously unselected package libpango-1.0-0:arm64. 510s Preparing to unpack .../084-libpango-1.0-0_1.56.2-1_arm64.deb ... 510s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 510s Selecting previously unselected package libpangoft2-1.0-0:arm64. 510s Preparing to unpack .../085-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 510s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 510s Selecting previously unselected package libpangocairo-1.0-0:arm64. 510s Preparing to unpack .../086-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 510s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 510s Selecting previously unselected package libpaper2:arm64. 510s Preparing to unpack .../087-libpaper2_2.2.5-0.3_arm64.deb ... 510s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 510s Selecting previously unselected package libpaper-utils. 510s Preparing to unpack .../088-libpaper-utils_2.2.5-0.3_arm64.deb ... 510s Unpacking libpaper-utils (2.2.5-0.3) ... 510s Selecting previously unselected package libsm6:arm64. 510s Preparing to unpack .../089-libsm6_2%3a1.2.4-1_arm64.deb ... 510s Unpacking libsm6:arm64 (2:1.2.4-1) ... 510s Selecting previously unselected package libtcl8.6:arm64. 510s Preparing to unpack .../090-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 510s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 510s Selecting previously unselected package libxft2:arm64. 510s Preparing to unpack .../091-libxft2_2.3.6-1build1_arm64.deb ... 510s Unpacking libxft2:arm64 (2.3.6-1build1) ... 510s Selecting previously unselected package libxss1:arm64. 510s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build3_arm64.deb ... 510s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 510s Selecting previously unselected package libtk8.6:arm64. 510s Preparing to unpack .../093-libtk8.6_8.6.16-1_arm64.deb ... 510s Unpacking libtk8.6:arm64 (8.6.16-1) ... 510s Selecting previously unselected package libudunits2-data. 510s Preparing to unpack .../094-libudunits2-data_2.2.28-7build1_all.deb ... 510s Unpacking libudunits2-data (2.2.28-7build1) ... 510s Selecting previously unselected package libudunits2-0. 510s Preparing to unpack .../095-libudunits2-0_2.2.28-7build1_arm64.deb ... 510s Unpacking libudunits2-0 (2.2.28-7build1) ... 511s Selecting previously unselected package libxt6t64:arm64. 511s Preparing to unpack .../096-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 511s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 511s Selecting previously unselected package zip. 511s Preparing to unpack .../097-zip_3.0-14ubuntu2_arm64.deb ... 511s Unpacking zip (3.0-14ubuntu2) ... 511s Selecting previously unselected package unzip. 511s Preparing to unpack .../098-unzip_6.0-28ubuntu6_arm64.deb ... 511s Unpacking unzip (6.0-28ubuntu6) ... 511s Selecting previously unselected package xdg-utils. 511s Preparing to unpack .../099-xdg-utils_1.2.1-2ubuntu1_all.deb ... 511s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 511s Selecting previously unselected package r-base-core. 511s Preparing to unpack .../100-r-base-core_4.4.3-1_arm64.deb ... 511s Unpacking r-base-core (4.4.3-1) ... 511s Selecting previously unselected package r-cran-littler. 511s Preparing to unpack .../101-r-cran-littler_0.3.20-2_arm64.deb ... 511s Unpacking r-cran-littler (0.3.20-2) ... 511s Selecting previously unselected package littler. 511s Preparing to unpack .../102-littler_0.3.20-2_all.deb ... 511s Unpacking littler (0.3.20-2) ... 511s Selecting previously unselected package r-cran-abind. 511s Preparing to unpack .../103-r-cran-abind_1.4-8-1_all.deb ... 511s Unpacking r-cran-abind (1.4-8-1) ... 511s Selecting previously unselected package r-cran-mass. 511s Preparing to unpack .../104-r-cran-mass_7.3-64-1_arm64.deb ... 511s Unpacking r-cran-mass (7.3-64-1) ... 511s Selecting previously unselected package r-cran-class. 511s Preparing to unpack .../105-r-cran-class_7.3-23-1_arm64.deb ... 511s Unpacking r-cran-class (7.3-23-1) ... 511s Selecting previously unselected package r-cran-proxy. 511s Preparing to unpack .../106-r-cran-proxy_0.4-27-1_arm64.deb ... 511s Unpacking r-cran-proxy (0.4-27-1) ... 511s Selecting previously unselected package r-cran-e1071. 511s Preparing to unpack .../107-r-cran-e1071_1.7-16-1_arm64.deb ... 511s Unpacking r-cran-e1071 (1.7-16-1) ... 511s Selecting previously unselected package r-cran-kernsmooth. 511s Preparing to unpack .../108-r-cran-kernsmooth_2.23-26-1_arm64.deb ... 511s Unpacking r-cran-kernsmooth (2.23-26-1) ... 511s Selecting previously unselected package r-cran-classint. 511s Preparing to unpack .../109-r-cran-classint_0.4-11+dfsg-1_arm64.deb ... 511s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 512s Selecting previously unselected package r-cran-cli. 512s Preparing to unpack .../110-r-cran-cli_3.6.4-1_arm64.deb ... 512s Unpacking r-cran-cli (3.6.4-1) ... 512s Selecting previously unselected package r-cran-codetools. 512s Preparing to unpack .../111-r-cran-codetools_0.2-20-1_all.deb ... 512s Unpacking r-cran-codetools (0.2-20-1) ... 512s Selecting previously unselected package r-cran-colorspace. 512s Preparing to unpack .../112-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 512s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 512s Selecting previously unselected package r-cran-dbi. 512s Preparing to unpack .../113-r-cran-dbi_1.2.3-1_all.deb ... 512s Unpacking r-cran-dbi (1.2.3-1) ... 512s Selecting previously unselected package r-cran-digest. 512s Preparing to unpack .../114-r-cran-digest_0.6.37-1_arm64.deb ... 512s Unpacking r-cran-digest (0.6.37-1) ... 512s Selecting previously unselected package r-cran-dotcall64. 512s Preparing to unpack .../115-r-cran-dotcall64_1.2-1_arm64.deb ... 512s Unpacking r-cran-dotcall64 (1.2-1) ... 512s Selecting previously unselected package r-cran-fansi. 512s Preparing to unpack .../116-r-cran-fansi_1.0.5-1_arm64.deb ... 512s Unpacking r-cran-fansi (1.0.5-1) ... 512s Selecting previously unselected package r-cran-farver. 512s Preparing to unpack .../117-r-cran-farver_2.1.2-1_arm64.deb ... 512s Unpacking r-cran-farver (2.1.2-1) ... 512s Selecting previously unselected package r-cran-pkgkitten. 512s Preparing to unpack .../118-r-cran-pkgkitten_0.2.4-1_all.deb ... 512s Unpacking r-cran-pkgkitten (0.2.4-1) ... 512s Selecting previously unselected package r-cran-rcpp. 512s Preparing to unpack .../119-r-cran-rcpp_1.0.14-1_arm64.deb ... 512s Unpacking r-cran-rcpp (1.0.14-1) ... 512s Selecting previously unselected package r-cran-spam. 512s Preparing to unpack .../120-r-cran-spam_2.11-1-1_arm64.deb ... 512s Unpacking r-cran-spam (2.11-1-1) ... 512s Selecting previously unselected package r-cran-viridislite. 512s Preparing to unpack .../121-r-cran-viridislite_0.4.2-2_all.deb ... 512s Unpacking r-cran-viridislite (0.4.2-2) ... 512s Selecting previously unselected package r-cran-maps. 512s Preparing to unpack .../122-r-cran-maps_3.4.2.1-1_arm64.deb ... 512s Unpacking r-cran-maps (3.4.2.1-1) ... 512s Selecting previously unselected package r-cran-fields. 512s Preparing to unpack .../123-r-cran-fields_16.3.1-1_arm64.deb ... 512s Unpacking r-cran-fields (16.3.1-1) ... 512s Selecting previously unselected package r-cran-fnn. 512s Preparing to unpack .../124-r-cran-fnn_1.1.4.1-1_arm64.deb ... 512s Unpacking r-cran-fnn (1.1.4.1-1) ... 512s Selecting previously unselected package r-cran-globals. 512s Preparing to unpack .../125-r-cran-globals_0.16.3-1_all.deb ... 512s Unpacking r-cran-globals (0.16.3-1) ... 512s Selecting previously unselected package r-cran-listenv. 512s Preparing to unpack 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513s Selecting previously unselected package r-cran-lifecycle. 513s Preparing to unpack .../132-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 513s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 513s Selecting previously unselected package r-cran-gtable. 513s Preparing to unpack .../133-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 513s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 513s Selecting previously unselected package r-cran-isoband. 513s Preparing to unpack .../134-r-cran-isoband_0.2.7-1_arm64.deb ... 513s Unpacking r-cran-isoband (0.2.7-1) ... 513s Selecting previously unselected package r-cran-lattice. 513s Preparing to unpack .../135-r-cran-lattice_0.22-6-1_arm64.deb ... 513s Unpacking r-cran-lattice (0.22-6-1) ... 513s Selecting previously unselected package r-cran-nlme. 513s Preparing to unpack .../136-r-cran-nlme_3.1.167-1_arm64.deb ... 513s Unpacking r-cran-nlme (3.1.167-1) ... 513s Selecting previously unselected package r-cran-matrix. 513s Preparing to unpack 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(0.6.5-1) ... 519s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 519s Setting up r-cran-fields (16.3.1-1) ... 519s Setting up r-cran-class (7.3-23-1) ... 519s Setting up r-cran-munsell (0.5.1-1) ... 519s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 519s Setting up r-cran-xts (0.14.1-1) ... 519s Setting up r-cran-future (1.34.0+dfsg-1) ... 519s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 519s Setting up r-cran-scales (1.3.0-1) ... 519s Setting up r-cran-e1071 (1.7-16-1) ... 519s Setting up r-cran-spacetime (1.3-3-1) ... 519s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 519s Setting up r-cran-classint (0.4-11+dfsg-1) ... 519s Setting up libheif-plugin-aomdec:arm64 (1.19.7-1) ... 519s Setting up libheif-plugin-libde265:arm64 (1.19.7-1) ... 519s Setting up libheif1:arm64 (1.19.7-1) ... 519s Setting up libgdal36:arm64 (3.10.2+dfsg-1build3) ... 519s Setting up r-cran-sf (1.0-19+dfsg-1) ... 519s Setting up r-cran-stars (0.6-8-1) ... 519s Setting up r-cran-sftime (0.2-0-6) ... 519s Setting up r-cran-gstat (2.1-3-1) ... 519s Setting up r-cran-terra (1.8-29-1) ... 519s Setting up r-cran-raster (3.6-31-1) ... 519s Processing triggers for install-info (7.1.1-1) ... 519s Processing triggers for libc-bin (2.41-1ubuntu2) ... 519s Processing triggers for man-db (2.13.0-1) ... 521s autopkgtest [15:40:09]: test run-unit-test: [----------------------- 521s BEGIN TEST allier.R 521s 521s R version 4.4.3 (2025-02-28) -- "Trophy Case" 521s Copyright (C) 2025 The R Foundation for Statistical Computing 521s Platform: aarch64-unknown-linux-gnu 521s 521s R is free software and comes with ABSOLUTELY NO WARRANTY. 521s You are welcome to redistribute it under certain conditions. 521s Type 'license()' or 'licence()' for distribution details. 521s 521s R is a collaborative project with many contributors. 521s Type 'contributors()' for more information and 521s 'citation()' on how to cite R or R packages in publications. 521s 521s Type 'demo()' for some demos, 'help()' for on-line help, or 521s 'help.start()' for an HTML browser interface to help. 521s Type 'q()' to quit R. 521s 522s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 522s > library(sp) 522s > library(gstat) 522s > 522s > # some data 522s > x <- c(215, 330, 410, 470, 545) 522s > y <- c(230, 310, 330, 340, 365) 522s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 522s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 522s > Allier <- data.frame(x, y, fc, por) 522s > coordinates(Allier) = ~x+y 522s > 522s > # gstat object for co-kriging using linear model of co-regionalization 522s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 522s + model=vgm(0.00247, "Sph", 480, 0.00166)) 522s > g <- gstat(g, id="por", formula=por~1, data=Allier, 522s + model=vgm(0.00239, "Sph", 480, 0.00118)) 522s > g <- gstat(g, id=c("fc", "por"), 522s + model=vgm(0.00151, "Sph", 480, -0.00124)) 522s > 522s > # predict at single point 522s > g$set = list(choleski = 0) # LDL' 522s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 522s Linear Model of Coregionalization found. Good. 522s [using ordinary cokriging] 522s we're at location X: 450 Y: 350 Z: 0 522s zero block size 522s we're at point X: 450 Y: 350 Z: 0 522s 522s # X: 522s #Matrix: 10 by 2 522s rbind( 522s c( 1.000000, 0.000000), # row 1 522s c( 1.000000, 0.000000), # row 2 522s c( 1.000000, 0.000000), # row 3 522s c( 1.000000, 0.000000), # row 4 522s c( 1.000000, 0.000000), # row 5 522s c( 0.000000, 1.000000), # row 6 522s c( 0.000000, 1.000000), # row 7 522s c( 0.000000, 1.000000), # row 8 522s c( 0.000000, 1.000000), # row 9 522s c( 0.000000, 1.000000) # row 10 522s ) 522s [using generalized covariances: max_val - semivariance()] 522s # Covariances (x_i, x_j) matrix C (upper triangle): 522s #Matrix: 10 by 10 522s rbind( 522s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 522s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 522s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 522s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 522s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 522s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 522s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 522s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 522s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 522s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 522s ) 522s 522s # glm->C, LDL' decomposed:: 522s #Matrix: 10 by 10 522s rbind( 522s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 522s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 522s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 522s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 522s ) 522s 522s # X'C-1 X: 522s #Matrix: 2 by 2 522s rbind( 522s c(665.433994, -232.313340), # row 1 522s c(-232.313340, 729.440848) # row 2 522s ) 522s 522s # beta: 522s #Vector: dim: 2 522s c( 0.244216, 0.440933) 522s # Cov(beta), (X'C-1 X)-1: 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.001691, 0.000538), # row 1 522s c( 0.000538, 0.001542) # row 2 522s ) 522s 522s # Corr(beta): 522s #Matrix: 2 by 2 522s rbind( 522s c( 1.000000, 0.333447), # row 1 522s c( 0.333447, 1.000000) # row 2 522s ) 522s 522s # X0 (X values at prediction location x0): 522s #Matrix: 2 by 2 522s rbind( 522s c( 1.000000, 0.000000), # row 1 522s c( 0.000000, 1.000000) # row 2 522s ) 522s 522s # BLUE(mu), E(y(x0)) = X0'beta: 522s #Vector: dim: 2 522s c( 0.244216, 0.440933) 522s # Covariances (x_i, x_0), C0: 522s #Matrix: 10 by 2 522s rbind( 522s c( 0.000638, 0.000390), # row 1 522s c( 0.001516, 0.000927), # row 2 522s c( 0.002126, 0.001300), # row 3 522s c( 0.002298, 0.001405), # row 4 522s c( 0.001738, 0.001062), # row 5 522s c( 0.000390, 0.000618), # row 6 522s c( 0.000927, 0.001467), # row 7 522s c( 0.001300, 0.002057), # row 8 522s c( 0.001405, 0.002223), # row 9 522s c( 0.001062, 0.001681) # row 10 522s ) 522s 522s # C-1 C0: 522s #Matrix: 10 by 2 522s rbind( 522s c( 0.008927, -0.017995), # row 1 522s c( 0.061935, -0.028550), # row 2 522s c( 0.225195, 0.078344), # row 3 522s c( 0.356735, 0.190177), # row 4 522s c( 0.094128, -0.023136), # row 5 522s c(-0.021119, 0.004935), # row 6 522s c(-0.033508, 0.055601), # row 7 522s c( 0.091947, 0.242576), # row 8 522s c( 0.223200, 0.398927), # row 9 522s c(-0.027153, 0.088995) # row 10 522s ) 522s 522s # [a] Cov_ij(B,B) or Cov_ij(0,0): 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.004130, 0.000270), # row 1 522s c( 0.000270, 0.003570) # row 2 522s ) 522s 522s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.000129, -0.000107), # row 1 522s c(-0.000107, 0.000089) # row 2 522s ) 522s 522s # [b] c0'C-1 c0: 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.001926, 0.001532), # row 1 522s c( 0.001532, 0.001931) # row 2 522s ) 522s 522s # Best Linear Unbiased Predictor: 522s #Vector: dim: 2 522s c( 0.253090, 0.441258) 522s # MSPE ([a]-[b]+[c]): 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.002332, -0.001369), # row 1 522s c(-0.001369, 0.001729) # row 2 522s ) 522s 522s # kriging weights: 522s #Matrix: 10 by 2 522s rbind( 522s c( 0.071177, -0.064988), # row 1 522s c( 0.108451, -0.066123), # row 2 522s c( 0.268160, 0.043141), # row 3 522s c( 0.401959, 0.153312), # row 4 522s c( 0.150253, -0.065342), # row 5 522s c(-0.076273, 0.056759), # row 6 522s c(-0.077605, 0.093781), # row 7 522s c( 0.050632, 0.277731), # row 8 522s c( 0.179933, 0.435972), # row 9 522s c(-0.076688, 0.135756) # row 10 522s ) 522s 522s 522s > g$set = list(choleski = 1) # Choleski 522s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 522s Linear Model of Coregionalization found. Good. 522s [using ordinary cokriging] 522s we're at location X: 450 Y: 350 Z: 0 522s zero block size 522s we're at point X: 450 Y: 350 Z: 0 522s 522s # X: 522s #Matrix: 10 by 2 522s rbind( 522s c( 1.000000, 0.000000), # row 1 522s c( 1.000000, 0.000000), # row 2 522s c( 1.000000, 0.000000), # row 3 522s c( 1.000000, 0.000000), # row 4 522s c( 1.000000, 0.000000), # row 5 522s c( 0.000000, 1.000000), # row 6 522s c( 0.000000, 1.000000), # row 7 522s c( 0.000000, 1.000000), # row 8 522s c( 0.000000, 1.000000), # row 9 522s c( 0.000000, 1.000000) # row 10 522s ) 522s [using generalized covariances: max_val - semivariance()] 522s # Covariances (x_i, x_j) matrix C (upper triangle): 522s #Matrix: 10 by 10 522s rbind( 522s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 522s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 522s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 522s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 522s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 522s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 522s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 522s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 522s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 522s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 522s ) 522s 522s # glm->C, Choleski decomposed:: 522s #Matrix: 10 by 10 522s rbind( 522s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 522s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 522s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 522s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 522s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 522s ) 522s 522s # X'C-1 X: 522s #Matrix: 2 by 2 522s rbind( 522s c(665.433994, -232.313340), # row 1 522s c(-232.313340, 729.440848) # row 2 522s ) 522s 522s # beta: 522s #Vector: dim: 2 522s c( 0.244216, 0.440933) 522s # Cov(beta), (X'C-1 X)-1: 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.001691, 0.000538), # row 1 522s c( 0.000538, 0.001542) # row 2 522s ) 522s 522s # Corr(beta): 522s #Matrix: 2 by 2 522s rbind( 522s c( 1.000000, 0.333447), # row 1 522s c( 0.333447, 1.000000) # row 2 522s ) 522s 522s # X0 (X values at prediction location x0): 522s #Matrix: 2 by 2 522s rbind( 522s c( 1.000000, 0.000000), # row 1 522s c( 0.000000, 1.000000) # row 2 522s ) 522s 522s # BLUE(mu), E(y(x0)) = X0'beta: 522s #Vector: dim: 2 522s c( 0.244216, 0.440933) 522s # Covariances (x_i, x_0), C0: 522s #Matrix: 10 by 2 522s rbind( 522s c( 0.000638, 0.000390), # row 1 522s c( 0.001516, 0.000927), # row 2 522s c( 0.002126, 0.001300), # row 3 522s c( 0.002298, 0.001405), # row 4 522s c( 0.001738, 0.001062), # row 5 522s c( 0.000390, 0.000618), # row 6 522s c( 0.000927, 0.001467), # row 7 522s c( 0.001300, 0.002057), # row 8 522s c( 0.001405, 0.002223), # row 9 522s c( 0.001062, 0.001681) # row 10 522s ) 522s 522s # C-1 C0: 522s #Matrix: 10 by 2 522s rbind( 522s c( 0.008927, -0.017995), # row 1 522s c( 0.061935, -0.028550), # row 2 522s c( 0.225195, 0.078344), # row 3 522s c( 0.356735, 0.190177), # row 4 522s c( 0.094128, -0.023136), # row 5 522s c(-0.021119, 0.004935), # row 6 522s c(-0.033508, 0.055601), # row 7 522s c( 0.091947, 0.242576), # row 8 522s c( 0.223200, 0.398927), # row 9 522s c(-0.027153, 0.088995) # row 10 522s ) 522s 522s # [a] Cov_ij(B,B) or Cov_ij(0,0): 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.004130, 0.000270), # row 1 522s c( 0.000270, 0.003570) # row 2 522s ) 522s 522s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.000129, -0.000107), # row 1 522s c(-0.000107, 0.000089) # row 2 522s ) 522s 522s # [b] c0'C-1 c0: 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.001926, 0.001532), # row 1 522s c( 0.001532, 0.001931) # row 2 522s ) 522s 522s # Best Linear Unbiased Predictor: 522s #Vector: dim: 2 522s c( 0.253090, 0.441258) 522s # MSPE ([a]-[b]+[c]): 522s #Matrix: 2 by 2 522s rbind( 522s c( 0.002332, -0.001369), # row 1 522s c(-0.001369, 0.001729) # row 2 522s ) 522s 522s # kriging weights: 522s #Matrix: 10 by 2 522s rbind( 522s c( 0.071177, -0.064988), # row 1 522s c( 0.108451, -0.066123), # row 2 522s c( 0.268160, 0.043141), # row 3 522s c( 0.401959, 0.153312), # row 4 522s c( 0.150253, -0.065342), # row 5 522s c(-0.076273, 0.056759), # row 6 522s c(-0.077605, 0.093781), # row 7 522s c( 0.050632, 0.277731), # row 8 522s c( 0.179933, 0.435972), # row 9 522s c(-0.076688, 0.135756) # row 10 522s ) 522s 522s 522s > all.equal(A,B) 522s [1] TRUE 522s > 522s > # TRUE 522s > 522s BEGIN TEST blockkr.R 522s 522s R version 4.4.3 (2025-02-28) -- "Trophy Case" 522s Copyright (C) 2025 The R Foundation for Statistical Computing 522s Platform: aarch64-unknown-linux-gnu 522s 522s R is free software and comes with ABSOLUTELY NO WARRANTY. 522s You are welcome to redistribute it under certain conditions. 522s Type 'license()' or 'licence()' for distribution details. 522s 522s R is a collaborative project with many contributors. 522s Type 'contributors()' for more information and 522s 'citation()' on how to cite R or R packages in publications. 522s 522s Type 'demo()' for some demos, 'help()' for on-line help, or 522s 'help.start()' for an HTML browser interface to help. 522s Type 'q()' to quit R. 522s 523s > library(sp) 523s > data(meuse) 523s > coordinates(meuse) = c("x", "y") 523s > new.locs <- SpatialPoints(data.frame( 523s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 523s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 523s > library(gstat) 523s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 523s + block = c(40,40), nmax = 40) 523s [using ordinary kriging] 523s coordinates var1.pred var1.var 523s 1 (181170, 333250) 268.7576 19447.67 523s 2 (180310, 332189) 663.4915 16991.33 523s 3 (180205, 331707) 251.4606 21579.71 523s 4 (178673, 330066) 532.5776 73807.91 523s 5 (178770, 330675) 664.4039 23589.17 523s 6 (178270, 331075) 565.5436 155113.23 523s > 523s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 523s > 523s > disc = c(-15,-5,5,15) 523s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 523s > block.irreg 523s x y 523s 1 -15 -15 523s 2 -5 -15 523s 3 5 -15 523s 4 15 -15 523s 5 -15 -5 523s 6 -5 -5 523s 7 5 -5 523s 8 15 -5 523s 9 -15 5 523s 10 -5 5 523s 11 5 5 523s 12 15 5 523s 13 -15 15 523s 14 -5 15 523s 15 5 15 523s 16 15 15 523s > 523s > # first disable default Gaussian quadrature used for block integration, by 523s > # setting nblockdiscr explicitly: 523s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 523s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 523s [using ordinary kriging] 523s coordinates var1.pred var1.var 523s 1 (181170, 333250) 268.7324 19568.76 523s > # now pass the same block discretization as block.irreg: 523s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 523s + block = block.irreg, nmax = 40) 523s [using ordinary kriging] 523s coordinates var1.pred var1.var 523s 1 (181170, 333250) 268.7324 19568.76 523s > # check weights argument: 523s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 523s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 523s + block = block.irreg, nmax = 40) 523s [using ordinary kriging] 523s coordinates var1.pred var1.var 523s 1 (181170, 333250) 268.7324 19568.76 523s > 523s BEGIN TEST covtable.R 523s 523s R version 4.4.3 (2025-02-28) -- "Trophy Case" 523s Copyright (C) 2025 The R Foundation for Statistical Computing 523s Platform: aarch64-unknown-linux-gnu 523s 523s R is free software and comes with ABSOLUTELY NO WARRANTY. 523s You are welcome to redistribute it under certain conditions. 523s Type 'license()' or 'licence()' for distribution details. 523s 523s R is a collaborative project with many contributors. 523s Type 'contributors()' for more information and 523s 'citation()' on how to cite R or R packages in publications. 523s 523s Type 'demo()' for some demos, 'help()' for on-line help, or 523s 'help.start()' for an HTML browser interface to help. 523s Type 'q()' to quit R. 523s 523s > library(gstat) 524s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 524s > d$z=1:4 524s > vv=vgm(model = "Tab", covtable = 524s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 524s > vv 524s model psill maxdist 524s 1 Tab NA 1 524s covariance table: 524s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 524s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 524s [using ordinary kriging] 524s x y var1.pred var1.var 524s 1 0 0 2.5 1.017767 524s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 524s [using ordinary kriging] 524s x y var1.pred var1.var 524s 1 0 0 2.5 1.017863 524s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 524s [using ordinary kriging] 524s x y var1.pred var1.var 524s 1 0 0 1.5 1.267767 524s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 524s [using ordinary kriging] 524s x y var1.pred var1.var 524s 1 0 0 1.5 1.267863 524s > 524s BEGIN TEST cv.R 524s 524s R version 4.4.3 (2025-02-28) -- "Trophy Case" 524s Copyright (C) 2025 The R Foundation for Statistical Computing 524s Platform: aarch64-unknown-linux-gnu 524s 524s R is free software and comes with ABSOLUTELY NO WARRANTY. 524s You are welcome to redistribute it under certain conditions. 524s Type 'license()' or 'licence()' for distribution details. 524s 524s R is a collaborative project with many contributors. 524s Type 'contributors()' for more information and 524s 'citation()' on how to cite R or R packages in publications. 524s 524s Type 'demo()' for some demos, 'help()' for on-line help, or 524s 'help.start()' for an HTML browser interface to help. 524s Type 'q()' to quit R. 524s 524s > # try bivariate cokriging; cross validate first variable 524s > library(sp) 524s > data(meuse) 525s > library(gstat) 525s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 525s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 525s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 525s > v=variogram(g) 525s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 525s > g=fit.lmc(v, g) 525s > g 525s data: 525s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 525s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 525s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 525s variograms: 525s model psill range 525s log-zinc Sph 0.7132435 1000 525s log-lead Sph 0.6133020 1000 525s log-copper Sph 0.3634211 1000 525s log-zinc.log-lead Sph 0.6367012 1000 525s log-zinc.log-copper Sph 0.4570044 1000 525s log-lead.log-copper Sph 0.3934910 1000 525s ~x + y 525s > set.seed(13131) 525s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s log.zinc.pred log.zinc.var observed residual 525s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 525s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 525s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 525s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 525s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 525s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 525s zscore fold x y 525s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 525s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 525s Median :-0.10755 Median :3.000 Median :179991 Median :331633 525s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 525s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 525s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 525s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 525s Warning message: 525s In checkNames(value) : 525s attempt to set invalid names: this may lead to problems later on. See ?make.names 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s Intrinsic Correlation found. Good. 525s [using ordinary cokriging] 525s log.zinc.pred log.zinc.var observed residual 525s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 525s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 525s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 525s Mean :5.883 Mean :0.006609 Warning message: 525s In checkNames(value) : 525s attempt to set invalid names: this may lead to problems later on. See ?make.names 525s Mean :5.886 Mean : 0.0026164 525s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 525s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 525s zscore fold x y 525s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 525s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 525s Median : 0.007242 Median :3.000 Median :179991 Median :331633 525s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 525s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 525s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 525s > 525s BEGIN TEST cv3d.R 525s 525s R version 4.4.3 (2025-02-28) -- "Trophy Case" 525s Copyright (C) 2025 The R Foundation for Statistical Computing 525s Platform: aarch64-unknown-linux-gnu 525s 525s R is free software and comes with ABSOLUTELY NO WARRANTY. 525s You are welcome to redistribute it under certain conditions. 525s Type 'license()' or 'licence()' for distribution details. 525s 525s R is a collaborative project with many contributors. 525s Type 'contributors()' for more information and 525s 'citation()' on how to cite R or R packages in publications. 525s 525s Type 'demo()' for some demos, 'help()' for on-line help, or 525s 'help.start()' for an HTML browser interface to help. 525s Type 'q()' to quit R. 525s 525s > options(digits = 4) 525s > set.seed(1131) 525s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 525s > library(gstat) 526s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 527s > summary(xx) 527s var1.pred var1.var observed residual 527s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 527s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 527s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 527s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 527s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 527s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 527s zscore fold x y 527s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 527s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 527s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 527s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 527s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 527s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 527s z 527s Min. :0.0016 527s 1st Qu.:0.1865 527s Median :0.4485 527s Mean :0.4714 527s 3rd Qu.:0.7240 527s Max. :0.9942 527s > 527s BEGIN TEST fit.R 527s 527s R version 4.4.3 (2025-02-28) -- "Trophy Case" 527s Copyright (C) 2025 The R Foundation for Statistical Computing 527s Platform: aarch64-unknown-linux-gnu 527s 527s R is free software and comes with ABSOLUTELY NO WARRANTY. 527s You are welcome to redistribute it under certain conditions. 527s Type 'license()' or 'licence()' for distribution details. 527s 527s R is a collaborative project with many contributors. 527s Type 'contributors()' for more information and 527s 'citation()' on how to cite R or R packages in publications. 527s 527s Type 'demo()' for some demos, 'help()' for on-line help, or 527s 'help.start()' for an HTML browser interface to help. 527s Type 'q()' to quit R. 527s 527s > library(sp) 527s > data(meuse) 527s > library(gstat) 527s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 527s > v$gamma=c(0.5,1,2,3,3) 527s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 527s model psill range 527s 1 Nug 0.000000 0.00 527s 2 Sph 7.878195 1567.77 527s Warning message: 527s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 527s model psill range 527s 1 Nug 0.000000 0.00 527s 2 Sph 7.878195 1567.77 527s > 527s BEGIN TEST krige0.R 527s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 527s partial sill or nugget fixed at zero value 527s 527s R version 4.4.3 (2025-02-28) -- "Trophy Case" 527s Copyright (C) 2025 The R Foundation for Statistical Computing 527s Platform: aarch64-unknown-linux-gnu 527s 527s R is free software and comes with ABSOLUTELY NO WARRANTY. 527s You are welcome to redistribute it under certain conditions. 527s Type 'license()' or 'licence()' for distribution details. 527s 527s R is a collaborative project with many contributors. 527s Type 'contributors()' for more information and 527s 'citation()' on how to cite R or R packages in publications. 527s 527s Type 'demo()' for some demos, 'help()' for on-line help, or 527s 'help.start()' for an HTML browser interface to help. 527s Type 'q()' to quit R. 527s 528s > # test -- load data: 528s > library(sp) 528s > data(meuse) 528s > coordinates(meuse) = ~x+y 528s > data(meuse.grid) 528s > gridded(meuse.grid) = ~x+y 528s > 528s > library(gstat) 528s > # test -- idw 528s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 528s > x <- idw(zinc~1, meuse, meuse.grid) 528s [inverse distance weighted interpolation] 528s > all.equal(x$var1.pred, meuse.grid$idw) 528s [1] TRUE 528s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 529s > v = vgm(1, "Exp", 500) 529s > # test sk: 529s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 529s > rownames(x0$pred)=NULL 529s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 529s [using simple kriging] 529s > all.equal(x$var1.pred, x0$pred[,1]) 529s [1] TRUE 529s > all.equal(x$var1.var, x0$var) 529s [1] TRUE 529s > # test ok: 529s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 529s > rownames(x0$pred)=NULL 529s > names(x0$var)=NULL 529s > x <- krige(zinc~1, meuse, meuse.grid, v) 529s [using ordinary kriging] 529s > all.equal(x$var1.pred, x0$pred[,1]) 529s [1] TRUE 529s > all.equal(x$var1.var, x0$var) 529s [1] TRUE 529s > # test uk: 529s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 529s > rownames(x0$pred)=NULL 529s > names(x0$var)=NULL 529s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 529s [using universal kriging] 529s > all.equal(x$var1.pred, x0$pred[,1]) 529s [1] TRUE 529s > all.equal(x$var1.var, x0$var) 529s [1] TRUE 529s > 529s BEGIN TEST line.R 529s 529s R version 4.4.3 (2025-02-28) -- "Trophy Case" 529s Copyright (C) 2025 The R Foundation for Statistical Computing 529s Platform: aarch64-unknown-linux-gnu 529s 529s R is free software and comes with ABSOLUTELY NO WARRANTY. 529s You are welcome to redistribute it under certain conditions. 529s Type 'license()' or 'licence()' for distribution details. 529s 529s R is a collaborative project with many contributors. 529s Type 'contributors()' for more information and 529s 'citation()' on how to cite R or R packages in publications. 529s 529s Type 'demo()' for some demos, 'help()' for on-line help, or 529s 'help.start()' for an HTML browser interface to help. 529s Type 'q()' to quit R. 529s 530s > options(digits=5) 530s > library(sp) 530s > data(meuse.grid) 530s > gridded(meuse.grid) = ~x+y 530s > data(meuse) 530s > coordinates(meuse) = ~x+y 530s > 530s > # choose arbitrary line over the grid: 530s > image(meuse.grid["dist"],axes=T) 530s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 530s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 530s > plot(Sl,add=T,col='green') 530s > 530s > # use the default spsample arguments of predict.gstat: 530s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 530s > plot(pts, pch=3, cex=.2, add=T) 530s > 530s > library(gstat) 530s > v = vgm(.6, "Sph", 900, .06) 530s > out1 = krige(log(zinc)~1, meuse, Sl, v) 530s [using ordinary kriging] 530s > out1 530s An object of class "SpatialLinesDataFrame" 530s Slot "data": 530s x y var1.pred var1.var 530s a 180333 332167 6.1618 0.008025 530s 530s Slot "lines": 530s [[1]] 530s An object of class "Lines" 530s Slot "Lines": 530s [[1]] 530s An object of class "Line" 530s Slot "coords": 530s [,1] [,2] 530s [1,] 180000 331000 530s [2,] 180000 332000 530s [3,] 181000 333500 530s 530s 530s 530s Slot "ID": 530s [1] "a" 530s 530s 530s 530s Slot "bbox": 530s min max 530s x 180000 181000 530s y 331000 333500 530s 530s Slot "proj4string": 530s Coordinate Reference System: 530s Deprecated Proj.4 representation: NA 530s 530s > 530s > points(180333,332167,pch=3,cex=2) 530s > 530s > # use the same line as block discretization, and predict for (0,0) 530s > # (because the block discretizing points are not centered) 530s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 530s [using ordinary kriging] 530s > out2 530s coordinates var1.pred var1.var 530s 1 (0, 0) 6.1618 0.008025 530s > 530s > compare.krigingLines = function(formula, data, newdata, model) { 530s + out1 = krige(formula, data, newdata, model) 530s + pts = spsample(newdata, n=500, 'regular', offset=.5) 530s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 530s + print("difference:") 530s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 530s + } 530s > 530s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 530s [using ordinary kriging] 530s [using ordinary kriging] 530s [1] "difference:" 530s var1.pred var1.var 530s a 0 0 530s > 530s > # one line, consisting of two line segments: 530s > pp2 = rbind(c(181000,333500),c(181000,332500)) 530s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 530s > krige(log(zinc)~1, meuse, Sl2, v) 531s [using ordinary kriging] 531s An object of class "SpatialLinesDataFrame" 531s Slot "data": 531s x y var1.pred var1.var 531s a 180667 332583 6.0424 0.0053191 531s 531s Slot "lines": 531s [[1]] 531s An object of class "Lines" 531s Slot "Lines": 531s [[1]] 531s An object of class "Line" 531s Slot "coords": 531s [,1] [,2] 531s [1,] 180000 331000 531s [2,] 180000 332000 531s [3,] 181000 333500 531s 531s 531s [[2]] 531s An object of class "Line" 531s Slot "coords": 531s [,1] [,2] 531s [1,] 181000 333500 531s [2,] 181000 332500 531s 531s 531s 531s Slot "ID": 531s [1] "a" 531s 531s 531s 531s Slot "bbox": 531s min max 531s x 180000 181000 531s y 331000 333500 531s 531s Slot "proj4string": 531s Coordinate Reference System: 531s Deprecated Proj.4 representation: NA 531s 531s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 531s [using ordinary kriging] 531s [using ordinary kriging] 531s [1] "difference:" 531s var1.pred var1.var 531s a 0 0 531s > 531s > # two seperate line segments: 531s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 531s > krige(log(zinc)~1, meuse, Sl3, v) 531s [using ordinary kriging] 531s An object of class "SpatialLinesDataFrame" 531s Slot "data": 531s x y var1.pred var1.var 531s a 180333 332167 6.1618 0.008025 531s b 181000 333000 5.7060 0.011043 531s 531s Slot "lines": 531s [[1]] 531s An object of class "Lines" 531s Slot "Lines": 531s [[1]] 531s An object of class "Line" 531s Slot "coords": 531s [,1] [,2] 531s [1,] 180000 331000 531s [2,] 180000 332000 531s [3,] 181000 333500 531s 531s 531s 531s Slot "ID": 531s [1] "a" 531s 531s 531s [[2]] 531s An object of class "Lines" 531s Slot "Lines": 531s [[1]] 531s An object of class "Line" 531s Slot "coords": 531s [,1] [,2] 531s [1,] 181000 333500 531s [2,] 181000 332500 531s 531s 531s 531s Slot "ID": 531s [1] "b" 531s 531s 531s 531s Slot "bbox": 531s min max 531s x 180000 181000 531s y 331000 333500 531s 531s Slot "proj4string": 531s Coordinate Reference System: 531s Deprecated Proj.4 representation: NA 531s 531s > 531s BEGIN TEST merge.R 531s 531s R version 4.4.3 (2025-02-28) -- "Trophy Case" 531s Copyright (C) 2025 The R Foundation for Statistical Computing 531s Platform: aarch64-unknown-linux-gnu 531s 531s R is free software and comes with ABSOLUTELY NO WARRANTY. 531s You are welcome to redistribute it under certain conditions. 531s Type 'license()' or 'licence()' for distribution details. 531s 531s R is a collaborative project with many contributors. 531s Type 'contributors()' for more information and 531s 'citation()' on how to cite R or R packages in publications. 531s 531s Type 'demo()' for some demos, 'help()' for on-line help, or 531s 'help.start()' for an HTML browser interface to help. 531s Type 'q()' to quit R. 531s 531s > options(digits=6) 531s > # illustrates the use of merge, for merging parameters accross variables: 531s > # Z1=m+e1(s) 531s > # Z2=m+e2(s) 531s > # Z1 and Z2 each have a different variogram, but share the parameter m 531s > # see documentation of gstat() function 531s > library(gstat) 531s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 531s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 531s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 531s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 531s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 531s > predict(g, data.frame(x=1,y=1), debug = 32) 531s Intrinsic Correlation found. Good. 531s [using ordinary cokriging] 531s we're at location X: 1 Y: 1 Z: 0 531s zero block size 531s we're at point X: 1 Y: 1 Z: 0 531s 531s # X: 531s #Matrix: 4 by 1 531s rbind( 531s c( 1.000000), # row 1 531s c( 1.000000), # row 2 531s c( 1.000000), # row 3 531s c( 1.000000) # row 4 531s ) 531s [using generalized covariances: max_val - semivariance()] 531s # Covariances (x_i, x_j) matrix C (upper triangle): 531s #Matrix: 4 by 4 531s rbind( 531s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 531s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 531s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 531s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 531s ) 531s 531s # glm->C, Choleski decomposed:: 531s #Matrix: 4 by 4 531s rbind( 531s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 531s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 531s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 531s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 531s ) 531s 531s # X'C-1 X: 531s #Matrix: 1 by 1 531s rbind( 531s c( 3.245289) # row 1 531s ) 531s 531s # beta: 531s #Vector: dim: 1 531s c( 2.500000) 531s # Cov(beta), (X'C-1 X)-1: 531s #Matrix: 1 by 1 531s rbind( 531s c( 0.308139) # row 1 531s ) 531s 531s # Corr(beta): 531s #Matrix: 1 by 1 531s rbind( 531s c( 1.000000) # row 1 531s ) 531s 531s # X0 (X values at prediction location x0): 531s #Matrix: 1 by 2 531s rbind( 531s c( 1.000000, 1.000000) # row 1 531s ) 531s 531s # BLUE(mu), E(y(x0)) = X0'beta: 531s #Vector: dim: 2 531s c( 2.500000, 2.500000) 531s # Covariances (x_i, x_0), C0: 531s #Matrix: 4 by 2 531s rbind( 531s c( 0.243117, 0.121558), # row 1 531s c( 0.243117, 0.121558), # row 2 531s c( 0.121558, 0.243117), # row 3 531s c( 0.121558, 0.243117) # row 4 531s ) 531s 531s # C-1 C0: 531s #Matrix: 4 by 2 531s rbind( 531s c( 0.206482, 0.089387), # row 1 531s c( 0.206482, 0.089387), # row 2 531s c( 0.089387, 0.206482), # row 3 531s c( 0.089387, 0.206482) # row 4 531s ) 531s 531s # [a] Cov_ij(B,B) or Cov_ij(0,0): 531s #Matrix: 2 by 2 531s rbind( 531s c( 1.000000, 0.500000), # row 1 531s c( 0.500000, 1.000000) # row 2 531s ) 531s 531s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 531s #Matrix: 2 by 2 531s rbind( 531s c( 0.051360, 0.051360), # row 1 531s c( 0.051360, 0.051360) # row 2 531s ) 531s 531s # [b] c0'C-1 c0: 531s #Matrix: 2 by 2 531s rbind( 531s c( 0.122130, 0.093662), # row 1 531s c( 0.093662, 0.122130) # row 2 531s ) 531s 531s # Best Linear Unbiased Predictor: 531s #Vector: dim: 2 531s c( 2.031619, 2.968381) 531s # MSPE ([a]-[b]+[c]): 531s #Matrix: 2 by 2 531s rbind( 531s c( 0.929230, 0.457698), # row 1 531s c( 0.457698, 0.929230) # row 2 531s ) 531s 531s # kriging weights: 531s #Matrix: 4 by 2 531s rbind( 531s c( 0.308548, 0.191452), # row 1 531s c( 0.308548, 0.191452), # row 2 531s c( 0.191452, 0.308548), # row 3 531s c( 0.191452, 0.308548) # row 4 531s ) 531s 531s 531s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 531s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 531s > 531s > # Z1 and Z2 share a regression slope: 531s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 531s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 531s + merge=list(c("d1",2,"d2",2))) 531s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 531s > predict(g, data.frame(x=1,y=1), debug = 32) 531s Intrinsic Correlation found. Good. 531s [using universal cokriging] 531s we're at location X: 1 Y: 1 Z: 0 531s zero block size 531s we're at point X: 1 Y: 1 Z: 0 531s 531s # X: 531s #Matrix: 4 by 3 531s rbind( 531s c( 1.000000, 0.000000, 0.000000), # row 1 531s c( 1.000000, 2.000000, 0.000000), # row 2 531s c( 0.000000, 0.000000, 1.000000), # row 3 531s c( 0.000000, 2.000000, 1.000000) # row 4 531s ) 531s [using generalized covariances: max_val - semivariance()] 531s # Covariances (x_i, x_j) matrix C (upper triangle): 531s #Matrix: 4 by 4 531s rbind( 531s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 531s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 531s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 531s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 531s ) 531s 531s # glm->C, Choleski decomposed:: 531s #Matrix: 4 by 4 531s rbind( 531s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 531s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 531s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 531s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 531s ) 531s 531s # X'C-1 X: 531s #Matrix: 3 by 3 531s rbind( 531s c( 1.774607, 1.622645, -0.151962), # row 1 531s c( 1.622645, 7.676050, 1.622645), # row 2 531s c(-0.151962, 1.622645, 1.774607) # row 3 531s ) 531s 531s # beta: 531s #Vector: dim: 3 531s c( 0.000000, 0.500000, 4.000000) 531s # Cov(beta), (X'C-1 X)-1: 531s #Matrix: 3 by 3 531s rbind( 531s c( 0.793363, -0.225695, 0.274305), # row 1 531s c(-0.225695, 0.225695, -0.225695), # row 2 531s c( 0.274305, -0.225695, 0.793363) # row 3 531s ) 531s 531s # Corr(beta): 531s #Matrix: 3 by 3 531s rbind( 531s c( 1.000000, -0.533366, 0.345750), # row 1 531s c(-0.533366, 1.000000, -0.533366), # row 2 531s c( 0.345750, -0.533366, 1.000000) # row 3 531s ) 531s 531s # X0 (X values at prediction location x0): 531s #Matrix: 3 by 2 531s rbind( 531s c( 1.000000, 0.000000), # row 1 531s c( 1.000000, 1.000000), # row 2 531s c( 0.000000, 1.000000) # row 3 531s ) 531s 531s # BLUE(mu), E(y(x0)) = X0'beta: 531s #Vector: dim: 2 531s c( 0.500000, 4.500000) 531s # Covariances (x_i, x_0), C0: 531s #Matrix: 4 by 2 531s rbind( 531s c( 0.243117, 0.121558), # row 1 531s c( 0.243117, 0.121558), # row 2 531s c( 0.121558, 0.243117), # row 3 531s c( 0.121558, 0.243117) # row 4 531s ) 531s 531s # C-1 C0: 531s #Matrix: 4 by 2 531s rbind( 531s c( 0.206482, 0.089387), # row 1 531s c( 0.206482, 0.089387), # row 2 531s c( 0.089387, 0.206482), # row 3 531s c( 0.089387, 0.206482) # row 4 531s ) 531s 531s # [a] Cov_ij(B,B) or Cov_ij(0,0): 531s #Matrix: 2 by 2 531s rbind( 531s c( 1.000000, 0.500000), # row 1 531s c( 0.500000, 1.000000) # row 2 531s ) 531s 531s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 531s #Matrix: 2 by 2 531s rbind( 531s c( 0.203564, -0.100844), # row 1 531s c(-0.100844, 0.203564) # row 2 531s ) 531s 531s # [b] c0'C-1 c0: 531s #Matrix: 2 by 2 531s rbind( 531s c( 0.122130, 0.093662), # row 1 531s c( 0.093662, 0.122130) # row 2 531s ) 531s 531s # Best Linear Unbiased Predictor: 531s #Vector: dim: 2 531s c( 0.500000, 4.500000) 531s # MSPE ([a]-[b]+[c]): 531s #Matrix: 2 by 2 531s rbind( 531s c( 1.081434, 0.305494), # row 1 531s c( 0.305494, 1.081434) # row 2 531s ) 531s 531s # kriging weights: 532s #Matrix: 4 by 2 532s rbind( 532s c( 0.500000, 0.000000), # row 1 532s c( 0.500000, 0.000000), # row 2 532s c( 0.000000, 0.500000), # row 3 532s c( 0.000000, 0.500000) # row 4 532s ) 532s 532s 532s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 532s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 532s > 532s BEGIN TEST na.action.R 532s 532s R version 4.4.3 (2025-02-28) -- "Trophy Case" 532s Copyright (C) 2025 The R Foundation for Statistical Computing 532s Platform: aarch64-unknown-linux-gnu 532s 532s R is free software and comes with ABSOLUTELY NO WARRANTY. 532s You are welcome to redistribute it under certain conditions. 532s Type 'license()' or 'licence()' for distribution details. 532s 532s R is a collaborative project with many contributors. 532s Type 'contributors()' for more information and 532s 'citation()' on how to cite R or R packages in publications. 532s 532s Type 'demo()' for some demos, 'help()' for on-line help, or 532s 'help.start()' for an HTML browser interface to help. 532s Type 'q()' to quit R. 532s 532s > library(sp) 532s > 532s > data(meuse) 532s > data(meuse.grid) 532s > 532s > set.seed(13131) # reproduce results 532s > 532s > # select 10 random rows; 532s > # create two missing values in the coordinates: 532s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 532s > m[c(2,8), "x"] = NA 532s > 532s > library(gstat) 532s > ## this is not allowed anymore: 532s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 532s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 532s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 532s missing values in object 532s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 532s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 532s missing values in object 532s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 532s missing values in object 532s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 532s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 532s missing values in object 532s > 532s > # select 10 random rows; 532s > # create two missing values in the regressor variable: 532s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 532s > m[c(3,7), "dist"] = NA 532s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 532s [ordinary or weighted least squares prediction] 532s x y var1.pred var1.var 532s 1 178860 330860 6.530134 0.2415196 532s 2 180260 331860 5.389567 0.2406041 532s 3 180100 331860 NA NA 532s 4 180460 331820 5.213370 0.2417197 532s 5 179660 330580 5.550859 0.2398778 532s 6 179740 330300 6.108648 0.2395392 532s 7 180220 330660 NA NA 532s 8 178580 329820 6.533801 0.2415453 532s 9 180100 331900 5.580264 0.2397758 532s 10 180780 331900 5.095967 0.2426499 532s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 532s [ordinary or weighted least squares prediction] 532s x y var1.pred var1.var 532s 1877 178860 330860 6.530134 0.2415196 532s 1015 180260 331860 5.389567 0.2406041 532s 1056 180460 331820 5.213370 0.2417197 532s 2199 179660 330580 5.550859 0.2398778 532s 2556 179740 330300 6.108648 0.2395392 532s 2985 178580 329820 6.533801 0.2415453 532s 975 180100 331900 5.580264 0.2397758 532s 992 180780 331900 5.095967 0.2426499 532s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 532s [ordinary or weighted least squares prediction] 532s x y var1.pred var1.var 532s 1877 178860 330860 6.530134 0.2415196 532s 1015 180260 331860 5.389567 0.2406041 532s 1056 180460 331820 5.213370 0.2417197 532s 2199 179660 330580 5.550859 0.2398778 532s 2556 179740 330300 6.108648 0.2395392 532s 2985 178580 329820 6.533801 0.2415453 532s 975 180100 331900 5.580264 0.2397758 532s 992 180780 331900 5.095967 0.2426499 532s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 532s > 532s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 532s missing values in object 532s BEGIN TEST rings.R 532s 532s R version 4.4.3 (2025-02-28) -- "Trophy Case" 532s Copyright (C) 2025 The R Foundation for Statistical Computing 532s Platform: aarch64-unknown-linux-gnu 532s 532s R is free software and comes with ABSOLUTELY NO WARRANTY. 532s You are welcome to redistribute it under certain conditions. 532s Type 'license()' or 'licence()' for distribution details. 532s 532s R is a collaborative project with many contributors. 532s Type 'contributors()' for more information and 532s 'citation()' on how to cite R or R packages in publications. 532s 532s Type 'demo()' for some demos, 'help()' for on-line help, or 532s 'help.start()' for an HTML browser interface to help. 532s Type 'q()' to quit R. 532s 533s > library(sp) 533s > library(gstat) 533s > set.seed(13331) 533s > 533s > x = runif(10) 533s > y = runif(10) 533s > z = rnorm(10) 533s > d = data.frame(x=x,y=y,z=z) 533s > bl = c(1,1) 533s > 533s > nd = data.frame(x=.5, y=.5) 533s > 533s > # single block: 533s > library(sp) 533s > coordinates(d) = ~x+y 533s > nd = SpatialPoints(nd) 533s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 533s + set = list(nb=4)) 533s [using ordinary kriging] 533s > 533s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 533s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 533s > a = data.frame(a = 1, b = 2) 533s > rownames(a) = "xx" 533s > r1df = SpatialPolygonsDataFrame(r1, a) 533s > 533s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 533s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 533s > yy = predict(g, r1df, block = bl, sps.args = args) 533s [using ordinary kriging] 533s > 533s > xx = as.data.frame(xx) 533s > yy = as.data.frame(yy) 533s > row.names(xx) = row.names(yy) 533s > print(all.equal(xx,yy)) 533s [1] TRUE 533s > 533s > ## multiple blocks of equal size: 533s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 533s > nd = SpatialPoints(nd) 533s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 533s + set = list(nb=4)) 533s [using ordinary kriging] 533s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 533s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 533s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 533s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 533s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 533s > r1 = SpatialPolygons(list( 533s + Polygons(list(Polygon(ring0)), ID = "x0"), 533s + Polygons(list(Polygon(ring1)), ID = "x1"), 533s + Polygons(list(Polygon(ring2)), ID = "x2"), 533s + Polygons(list(Polygon(ring3)), ID = "x3"), 533s + Polygons(list(Polygon(ring4)), ID = "x4") 533s + )) 533s > df = data.frame(a=rep(1,5), b= rep(1,5)) 533s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 533s > r1df = SpatialPolygonsDataFrame(r1, df) 533s > 533s > yy = predict(g, r1, block = bl, sps.args = args) 533s [using ordinary kriging] 533s > xx = as.data.frame(xx) 533s > yy = as.data.frame(yy) 533s > row.names(xx) = row.names(yy) 533s > all.equal(xx, yy) 533s [1] TRUE 533s > 533s > ## multiple blocks of equal size: 533s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 533s > yy = predict(g, r1, block = bl, sps.args = args) 533s [using ordinary kriging] 533s > xx = as.data.frame(xx) 533s > yy = as.data.frame(yy) 533s > row.names(xx) = row.names(yy) 533s > print(all.equal(xx, yy)) 533s [1] TRUE 533s > 533s > ## multiple blocks of varying size: 533s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 533s > nd = SpatialPoints(nd) 533s > bl = c(1,1) 533s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 533s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 533s + set = list(nb=4)) 533s [using ordinary kriging] 533s > bl = c(2,2) 533s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 533s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 533s + set = list(nb=4)) 533s [using ordinary kriging] 533s > bl = c(3,3) 533s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 533s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 533s + set = list(nb=4)) 533s [using ordinary kriging] 533s > r1 = SpatialPolygons(list( 533s + Polygons(list(Polygon(ring0)), ID = "x0"), 533s + Polygons(list(Polygon(ring1)), ID = "x1"), 533s + Polygons(list(Polygon(ring2)), ID = "x2") 533s + )) 533s > df = data.frame(a = rep(1,3), b = rep(1,3)) 533s > rownames(df) = c("x0", "x1", "x2") 533s > r1df = SpatialPolygonsDataFrame(r1, df) 533s > 533s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 533s > yy = predict(g, r1df, block = bl, sps.args = args) 533s [using ordinary kriging] 533s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 533s > row.names(xx) = 1:3 533s > xx = as.data.frame(xx) 533s > yy = as.data.frame(yy) 533s > row.names(xx) = row.names(yy) 533s > print(all.equal(xx, yy)) 533s [1] TRUE 533s > 533s BEGIN TEST sim.R 534s 534s R version 4.4.3 (2025-02-28) -- "Trophy Case" 534s Copyright (C) 2025 The R Foundation for Statistical Computing 534s Platform: aarch64-unknown-linux-gnu 534s 534s R is free software and comes with ABSOLUTELY NO WARRANTY. 534s You are welcome to redistribute it under certain conditions. 534s Type 'license()' or 'licence()' for distribution details. 534s 534s R is a collaborative project with many contributors. 534s Type 'contributors()' for more information and 534s 'citation()' on how to cite R or R packages in publications. 534s 534s Type 'demo()' for some demos, 'help()' for on-line help, or 534s 'help.start()' for an HTML browser interface to help. 534s Type 'q()' to quit R. 534s 534s > options(digits=6) 534s > library(sp) 534s > data(meuse) 534s > set.seed(158229572) 534s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 534s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 534s > library(gstat) 534s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 534s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 534s + block = c(40,40), nmax = 40, nsim = 10) 534s drawing 10 GLS realisations of beta... 534s [using conditional Gaussian simulation] 534s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 534s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 534s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 534s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 534s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 534s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 534s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 534s sim8 sim9 sim10 534s 1 294.107 113.347 279.991 534s 2 776.498 724.160 901.692 534s 3 338.021 630.244 140.272 534s 4 127.301 957.242 444.007 534s 5 533.773 748.144 623.960 534s 6 1084.170 537.604 -214.972 534s > 534s BEGIN TEST stars.R 534s 534s R version 4.4.3 (2025-02-28) -- "Trophy Case" 534s Copyright (C) 2025 The R Foundation for Statistical Computing 534s Platform: aarch64-unknown-linux-gnu 534s 534s R is free software and comes with ABSOLUTELY NO WARRANTY. 534s You are welcome to redistribute it under certain conditions. 534s Type 'license()' or 'licence()' for distribution details. 534s 534s R is a collaborative project with many contributors. 534s Type 'contributors()' for more information and 534s 'citation()' on how to cite R or R packages in publications. 534s 534s Type 'demo()' for some demos, 'help()' for on-line help, or 534s 'help.start()' for an HTML browser interface to help. 534s Type 'q()' to quit R. 534s 535s > Sys.setenv(TZ = "UTC") 535s > 535s > # 0. using sp: 535s > 535s > suppressPackageStartupMessages(library(sp)) 535s > demo(meuse, ask = FALSE) 535s 535s 535s demo(meuse) 535s ---- ~~~~~ 535s 535s > require(sp) 535s 535s > crs = CRS("EPSG:28992") 535s 535s > data("meuse") 535s 535s > coordinates(meuse) <- ~x+y 535s 535s > proj4string(meuse) <- crs 535s 535s > data("meuse.grid") 535s 535s > coordinates(meuse.grid) <- ~x+y 535s 535s > gridded(meuse.grid) <- TRUE 535s 535s > proj4string(meuse.grid) <- crs 535s 535s > data("meuse.riv") 535s 535s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 535s 535s > proj4string(meuse.riv) <- crs 535s 535s > data("meuse.area") 535s 535s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 535s 535s > proj4string(meuse.area) <- crs 535s > suppressPackageStartupMessages(library(gstat)) 536s > v = variogram(log(zinc)~1, meuse) 536s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 536s model psill range 536s 1 Nug 0.05066243 0.0000 536s 2 Sph 0.59060780 897.0209 536s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 536s [using ordinary kriging] 536s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 536s [using ordinary kriging] 536s > 536s > # 1. using sf: 536s > suppressPackageStartupMessages(library(sf)) 536s > demo(meuse_sf, ask = FALSE, echo = FALSE) 536s > # reloads meuse as data.frame, so 536s > demo(meuse, ask = FALSE) 536s 536s 536s demo(meuse) 536s ---- ~~~~~ 536s 536s > require(sp) 536s 536s > crs = CRS("EPSG:28992") 536s 536s > data("meuse") 536s 536s > coordinates(meuse) <- ~x+y 536s 536s > proj4string(meuse) <- crs 536s 536s > data("meuse.grid") 536s 536s > coordinates(meuse.grid) <- ~x+y 536s 536s > gridded(meuse.grid) <- TRUE 536s 536s > proj4string(meuse.grid) <- crs 536s 536s > data("meuse.riv") 536s 536s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 536s 536s > proj4string(meuse.riv) <- crs 536s 536s > data("meuse.area") 536s 536s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 536s 536s > proj4string(meuse.area) <- crs 536s > 536s > v = variogram(log(zinc)~1, meuse_sf) 536s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 536s model psill range 536s 1 Nug 0.05066243 0.0000 536s 2 Sph 0.59060780 897.0209 536s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 537s [using ordinary kriging] 537s > 537s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 537s [1] TRUE 537s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 537s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 537s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 537s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 537s > 537s > # 2. using stars for grid: 537s > 537s > suppressPackageStartupMessages(library(stars)) 537s > st = st_as_stars(meuse.grid) 537s > st_crs(st) 537s Coordinate Reference System: 537s User input: Amersfoort / RD New 537s wkt: 537s PROJCRS["Amersfoort / RD New", 537s BASEGEOGCRS["Amersfoort", 537s DATUM["Amersfoort", 537s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 537s LENGTHUNIT["metre",1]]], 537s PRIMEM["Greenwich",0, 537s ANGLEUNIT["degree",0.0174532925199433]], 537s ID["EPSG",4289]], 537s CONVERSION["RD New", 537s METHOD["Oblique Stereographic", 537s ID["EPSG",9809]], 537s PARAMETER["Latitude of natural origin",52.1561605555556, 537s ANGLEUNIT["degree",0.0174532925199433], 537s ID["EPSG",8801]], 537s PARAMETER["Longitude of natural origin",5.38763888888889, 537s ANGLEUNIT["degree",0.0174532925199433], 537s ID["EPSG",8802]], 537s PARAMETER["Scale factor at natural origin",0.9999079, 537s SCALEUNIT["unity",1], 537s ID["EPSG",8805]], 537s PARAMETER["False easting",155000, 537s LENGTHUNIT["metre",1], 537s ID["EPSG",8806]], 537s PARAMETER["False northing",463000, 537s LENGTHUNIT["metre",1], 537s ID["EPSG",8807]]], 537s CS[Cartesian,2], 537s AXIS["easting (X)",east, 537s ORDER[1], 537s LENGTHUNIT["metre",1]], 537s AXIS["northing (Y)",north, 537s ORDER[2], 537s LENGTHUNIT["metre",1]], 537s USAGE[ 537s SCOPE["Engineering survey, topographic mapping."], 537s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 537s BBOX[50.75,3.2,53.7,7.22]], 537s ID["EPSG",28992]] 537s > 537s > # compare inputs: 537s > sp = as(st, "Spatial") 537s > fullgrid(meuse.grid) = TRUE 537s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 537s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 537s [2] "Names: 1 string mismatch" 537s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 537s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 537s [2] "Names: 1 string mismatch" 537s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 537s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 537s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 537s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 537s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 537s > 537s > # kriging: 537s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 537s > k_st = if (Sys.getenv("USER") == "travis") { 537s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 537s + } else { 537s + krige(log(zinc)~1, meuse_sf, st, v.fit) 537s + } 537s [using ordinary kriging] 537s > k_st 537s stars object with 2 dimensions and 2 attributes 537s attribute(s): 537s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 537s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 537s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 537s dimension(s): 537s from to offset delta x/y 537s x 1 78 178440 40 [x] 537s y 1 104 333760 -40 [y] 537s > 537s > # handle factors, when going to stars? 537s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 537s > st_as_stars(k_sp_grd) 537s stars object with 2 dimensions and 3 attributes 537s attribute(s): 537s var1.pred var1.var cls 537s Min. :4.777 Min. :0.085 (0,5]: 316 537s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 537s Median :5.573 Median :0.162 (6,7]: 962 537s Mean :5.707 Mean :0.185 (7,8]: 47 537s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 537s Max. :7.440 Max. :0.500 NA's :5009 537s NA's :5009 NA's :5009 537s dimension(s): 537s from to offset delta refsys x/y 537s x 1 78 178440 40 Amersfoort / RD New [x] 537s y 1 104 333760 -40 Amersfoort / RD New [y] 537s > if (require(raster, quietly = TRUE)) { 537s + print(st_as_stars(raster::stack(k_sp_grd))) # check 537s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 537s + } 542s stars object with 3 dimensions and 1 attribute 542s attribute(s): 542s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 542s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 542s dimension(s): 542s from to offset delta refsys values 542s x 1 78 178440 40 Amersfoort / RD New NULL 542s y 1 104 333760 -40 Amersfoort / RD New NULL 542s band 1 3 NA NA NA var1.pred, var1.var , cls 542s x/y 542s x [x] 542s y [y] 542s band 543s [1] TRUE 543s > 543s > suppressPackageStartupMessages(library(spacetime)) 543s > 543s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 543s > n = 4 543s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 543s + stars:::create_dimensions(list( 543s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 543s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 543s + time = stars:::create_dimension(values = tm + 1:n)), 543s + raster = stars:::get_raster(dimensions = c("x", "y"))) 543s + ) 543s > s 543s stars object with 3 dimensions and 1 attribute 543s attribute(s): 543s Min. 1st Qu. Median Mean 3rd Qu. Max. 543s foo 1 16.75 32.5 32.5 48.25 64 543s dimension(s): 543s from to offset delta refsys x/y 543s x 1 4 10 0.5 NA [x] 543s y 1 4 0 -0.7 NA [y] 543s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 543s > 543s > as.data.frame(s) 543s x y time foo 543s 1 10.25 -0.35 2019-02-25 15:37:25 1 543s 2 10.75 -0.35 2019-02-25 15:37:25 2 543s 3 11.25 -0.35 2019-02-25 15:37:25 3 543s 4 11.75 -0.35 2019-02-25 15:37:25 4 543s 5 10.25 -1.05 2019-02-25 15:37:25 5 543s 6 10.75 -1.05 2019-02-25 15:37:25 6 543s 7 11.25 -1.05 2019-02-25 15:37:25 7 543s 8 11.75 -1.05 2019-02-25 15:37:25 8 543s 9 10.25 -1.75 2019-02-25 15:37:25 9 543s 10 10.75 -1.75 2019-02-25 15:37:25 10 543s 11 11.25 -1.75 2019-02-25 15:37:25 11 543s 12 11.75 -1.75 2019-02-25 15:37:25 12 543s 13 10.25 -2.45 2019-02-25 15:37:25 13 543s 14 10.75 -2.45 2019-02-25 15:37:25 14 543s 15 11.25 -2.45 2019-02-25 15:37:25 15 543s 16 11.75 -2.45 2019-02-25 15:37:25 16 543s 17 10.25 -0.35 2019-02-25 15:37:26 17 543s 18 10.75 -0.35 2019-02-25 15:37:26 18 543s 19 11.25 -0.35 2019-02-25 15:37:26 19 543s 20 11.75 -0.35 2019-02-25 15:37:26 20 543s 21 10.25 -1.05 2019-02-25 15:37:26 21 543s 22 10.75 -1.05 2019-02-25 15:37:26 22 543s 23 11.25 -1.05 2019-02-25 15:37:26 23 543s 24 11.75 -1.05 2019-02-25 15:37:26 24 543s 25 10.25 -1.75 2019-02-25 15:37:26 25 543s 26 10.75 -1.75 2019-02-25 15:37:26 26 543s 27 11.25 -1.75 2019-02-25 15:37:26 27 543s 28 11.75 -1.75 2019-02-25 15:37:26 28 543s 29 10.25 -2.45 2019-02-25 15:37:26 29 543s 30 10.75 -2.45 2019-02-25 15:37:26 30 543s 31 11.25 -2.45 2019-02-25 15:37:26 31 543s 32 11.75 -2.45 2019-02-25 15:37:26 32 543s 33 10.25 -0.35 2019-02-25 15:37:27 33 543s 34 10.75 -0.35 2019-02-25 15:37:27 34 543s 35 11.25 -0.35 2019-02-25 15:37:27 35 543s 36 11.75 -0.35 2019-02-25 15:37:27 36 543s 37 10.25 -1.05 2019-02-25 15:37:27 37 543s 38 10.75 -1.05 2019-02-25 15:37:27 38 543s 39 11.25 -1.05 2019-02-25 15:37:27 39 543s 40 11.75 -1.05 2019-02-25 15:37:27 40 543s 41 10.25 -1.75 2019-02-25 15:37:27 41 543s 42 10.75 -1.75 2019-02-25 15:37:27 42 543s 43 11.25 -1.75 2019-02-25 15:37:27 43 543s 44 11.75 -1.75 2019-02-25 15:37:27 44 543s 45 10.25 -2.45 2019-02-25 15:37:27 45 543s 46 10.75 -2.45 2019-02-25 15:37:27 46 543s 47 11.25 -2.45 2019-02-25 15:37:27 47 543s 48 11.75 -2.45 2019-02-25 15:37:27 48 543s 49 10.25 -0.35 2019-02-25 15:37:28 49 543s 50 10.75 -0.35 2019-02-25 15:37:28 50 543s 51 11.25 -0.35 2019-02-25 15:37:28 51 543s 52 11.75 -0.35 2019-02-25 15:37:28 52 543s 53 10.25 -1.05 2019-02-25 15:37:28 53 543s 54 10.75 -1.05 2019-02-25 15:37:28 54 543s 55 11.25 -1.05 2019-02-25 15:37:28 55 543s 56 11.75 -1.05 2019-02-25 15:37:28 56 543s 57 10.25 -1.75 2019-02-25 15:37:28 57 543s 58 10.75 -1.75 2019-02-25 15:37:28 58 543s 59 11.25 -1.75 2019-02-25 15:37:28 59 543s 60 11.75 -1.75 2019-02-25 15:37:28 60 543s 61 10.25 -2.45 2019-02-25 15:37:28 61 543s 62 10.75 -2.45 2019-02-25 15:37:28 62 543s 63 11.25 -2.45 2019-02-25 15:37:28 63 543s 64 11.75 -2.45 2019-02-25 15:37:28 64 543s > plot(s, col = sf.colors(), axes = TRUE) 543s > (s.stfdf = as(s, "STFDF")) 543s An object of class "STFDF" 543s Slot "data": 543s foo 543s 1 1 543s 2 2 543s 3 3 543s 4 4 543s 5 5 543s 6 6 543s 7 7 543s 8 8 543s 9 9 543s 10 10 543s 11 11 543s 12 12 543s 13 13 543s 14 14 543s 15 15 543s 16 16 543s 17 17 543s 18 18 543s 19 19 543s 20 20 543s 21 21 543s 22 22 543s 23 23 543s 24 24 543s 25 25 543s 26 26 543s 27 27 543s 28 28 543s 29 29 543s 30 30 543s 31 31 543s 32 32 543s 33 33 543s 34 34 543s 35 35 543s 36 36 543s 37 37 543s 38 38 543s 39 39 543s 40 40 543s 41 41 543s 42 42 543s 43 43 543s 44 44 543s 45 45 543s 46 46 543s 47 47 543s 48 48 543s 49 49 543s 50 50 543s 51 51 543s 52 52 543s 53 53 543s 54 54 543s 55 55 543s 56 56 543s 57 57 543s 58 58 543s 59 59 543s 60 60 543s 61 61 543s 62 62 543s 63 63 543s 64 64 543s 543s Slot "sp": 543s Object of class SpatialPixels 543s Grid topology: 543s cellcentre.offset cellsize cells.dim 543s x 10.25 0.5 4 543s y -2.45 0.7 4 543s SpatialPoints: 543s x y 543s [1,] 10.25 -0.35 543s [2,] 10.75 -0.35 543s [3,] 11.25 -0.35 543s [4,] 11.75 -0.35 543s [5,] 10.25 -1.05 543s [6,] 10.75 -1.05 543s [7,] 11.25 -1.05 543s [8,] 11.75 -1.05 543s [9,] 10.25 -1.75 543s [10,] 10.75 -1.75 543s [11,] 11.25 -1.75 543s [12,] 11.75 -1.75 543s [13,] 10.25 -2.45 543s [14,] 10.75 -2.45 543s [15,] 11.25 -2.45 543s [16,] 11.75 -2.45 543s Coordinate Reference System (CRS) arguments: NA 543s 543s Slot "time": 543s timeIndex 543s 2019-02-25 15:37:25 1 543s 2019-02-25 15:37:26 2 543s 2019-02-25 15:37:27 3 543s 2019-02-25 15:37:28 4 543s 543s Slot "endTime": 543s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 543s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 543s 543s > stplot(s.stfdf, scales = list(draw = TRUE)) 543s > 543s > (s2 = st_as_stars(s.stfdf)) 543s stars object with 3 dimensions and 1 attribute 543s attribute(s): 543s Min. 1st Qu. Median Mean 3rd Qu. Max. 543s foo 1 16.75 32.5 32.5 48.25 64 543s dimension(s): 543s from to offset delta refsys x/y 543s x 1 4 10 0.5 NA [x] 543s y 1 4 -1.11e-16 -0.7 NA [y] 543s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 543s > plot(s2, col = sf.colors(), axes = TRUE) 543s > all.equal(s, s2, check.attributes = FALSE) 543s [1] TRUE 543s > 543s > # multiple simulations: 543s > data(meuse, package = "sp") 543s > data(meuse.grid, package = "sp") 543s > coordinates(meuse.grid) <- ~x+y 543s > gridded(meuse.grid) <- TRUE 543s > meuse.grid = st_as_stars(meuse.grid) 543s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 543s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 543s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 543s > set.seed(123) 543s > ## IGNORE_RDIFF_BEGIN 543s > (p = predict(g, meuse.grid, nsim = 5)) 543s drawing 5 multivariate GLS realisations of beta... 543s [using conditional Gaussian simulation] 543s stars object with 3 dimensions and 2 attributes 543s attribute(s): 543s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 543s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 543s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 543s dimension(s): 543s from to offset delta values x/y 543s x 1 78 178440 40 NULL [x] 543s y 1 104 333760 -40 NULL [y] 543s sample 1 5 NA NA sim1,...,sim5 543s > ## IGNORE_RDIFF_END 543s > 543s BEGIN TEST unproj.R 544s 544s R version 4.4.3 (2025-02-28) -- "Trophy Case" 544s Copyright (C) 2025 The R Foundation for Statistical Computing 544s Platform: aarch64-unknown-linux-gnu 544s 544s R is free software and comes with ABSOLUTELY NO WARRANTY. 544s You are welcome to redistribute it under certain conditions. 544s Type 'license()' or 'licence()' for distribution details. 544s 544s R is a collaborative project with many contributors. 544s Type 'contributors()' for more information and 544s 'citation()' on how to cite R or R packages in publications. 544s 544s Type 'demo()' for some demos, 'help()' for on-line help, or 544s 'help.start()' for an HTML browser interface to help. 544s Type 'q()' to quit R. 544s 544s > # DOI 10.1007/s11004-011-9344-7 544s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 544s > 544s > suppressPackageStartupMessages(library(sp)) 544s > library(gstat) 544s > 544s > if (require(sp, quietly = TRUE) && 544s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 544s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 544s + data(meuse) 544s + coordinates(meuse) = ~x+y 544s + proj4string(meuse) = CRS("+init=epsg:28992") 544s + ll = "+proj=longlat +ellps=WGS84" 544s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 544s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 544s + meuse.ll[1:10,] 544s + variogram(log(zinc)~1, meuse.ll) 544s + 544s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 544s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 544s + 544s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 544s + abline(0,1) 544s + 544s + data(ozone2) 544s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 544s + data.frame(t(ozone2$y)), 544s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 544s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 544s + utm16 = "+proj=utm +zone=16" 544s + # oz.utm = spTransform(oz, utm16) 544s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 544s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 544s + 544s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 544s + 544s + foo <- 544s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 544s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 544s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 544s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 544s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 544s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 544s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 544s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 544s + -11L), class = "data.frame") 544s + 544s + coordinates(foo) <- ~lon+lat 544s + 544s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 544s + 544s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 544s + 544s + cat('==========\nvariogram:\n') 544s + print(head(vg.foo)) 544s + 544s + cat('==========\nspDistsN1 Distances:\n') 544s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 544s + } 546s ========== 546s variogram: 546s dist gamma dir.hor dir.ver id left right 546s 1 3115.1190 8.971063e-04Warning message: 546s In CPL_crs_from_input(x) : 546s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 546s 0 0 var1 2 1 546s 2 1908.0468 1.909846e+01 0 0 var1 3 1 546s 3 1405.6211 1.883757e+01 0 0 var1 3 2 546s 4 1837.5667 1.347749e+01 0 0 var1 4 1 546s 5 1522.8765 1.325847e+01 0 0 var1 4 2 546s 6 119.9386 4.886139e-01 0 0 var1 4 3 546s ========== 546s spDistsN1 Distances: 546s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 546s [8] 3081.7541 4090.4022 665.9348 2683.1516 546s > 546s BEGIN TEST variogram.R 546s 546s R version 4.4.3 (2025-02-28) -- "Trophy Case" 546s Copyright (C) 2025 The R Foundation for Statistical Computing 546s Platform: aarch64-unknown-linux-gnu 546s 546s R is free software and comes with ABSOLUTELY NO WARRANTY. 546s You are welcome to redistribute it under certain conditions. 546s Type 'license()' or 'licence()' for distribution details. 546s 546s R is a collaborative project with many contributors. 546s Type 'contributors()' for more information and 546s 'citation()' on how to cite R or R packages in publications. 546s 546s Type 'demo()' for some demos, 'help()' for on-line help, or 546s 'help.start()' for an HTML browser interface to help. 546s Type 'q()' to quit R. 546s 546s > library(sp) 546s > library(gstat) 547s > data(meuse) 547s > variogram(log(zinc)~1, ~x+y, meuse) 547s np dist gamma dir.hor dir.ver id 547s 1 57 79.29244 0.1234479 0 0 var1 547s 2 299 163.97367 0.2162185 0 0 var1 547s 3 419 267.36483 0.3027859 0 0 var1 547s 4 457 372.73542 0.4121448 0 0 var1 547s 5 547 478.47670 0.4634128 0 0 var1 547s 6 533 585.34058 0.5646933 0 0 var1 547s 7 574 693.14526 0.5689683 0 0 var1 547s 8 564 796.18365 0.6186769 0 0 var1 547s 9 589 903.14650 0.6471479 0 0 var1 547s 10 543 1011.29177 0.6915705 0 0 var1 547s 11 500 1117.86235 0.7033984 0 0 var1 547s 12 477 1221.32810 0.6038770 0 0 var1 547s 13 452 1329.16407 0.6517158 0 0 var1 547s 14 457 1437.25620 0.5665318 0 0 var1 547s 15 415 1543.20248 0.5748227 0 0 var1 547s > 547s > coordinates(meuse) <- ~ x + y 547s > variogram(log(zinc)~1, meuse) 547s np dist gamma dir.hor dir.ver id 547s 1 57 79.29244 0.1234479 0 0 var1 547s 2 299 163.97367 0.2162185 0 0 var1 547s 3 419 267.36483 0.3027859 0 0 var1 547s 4 457 372.73542 0.4121448 0 0 var1 547s 5 547 478.47670 0.4634128 0 0 var1 547s 6 533 585.34058 0.5646933 0 0 var1 547s 7 574 693.14526 0.5689683 0 0 var1 547s 8 564 796.18365 0.6186769 0 0 var1 547s 9 589 903.14650 0.6471479 0 0 var1 547s 10 543 1011.29177 0.6915705 0 0 var1 547s 11 500 1117.86235 0.7033984 0 0 var1 547s 12 477 1221.32810 0.6038770 0 0 var1 547s 13 452 1329.16407 0.6517158 0 0 var1 547s 14 457 1437.25620 0.5665318 0 0 var1 547s 15 415 1543.20248 0.5748227 0 0 var1 547s > 547s > ind=seq(1,155,2) 547s > var1= meuse[ind,] 547s > var2= meuse[-ind,] 547s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 547s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 547s > v.cross <- variogram(g) 547s > plot(v.cross) 547s > 547s > 547s BEGIN TEST vdist.R 547s 547s R version 4.4.3 (2025-02-28) -- "Trophy Case" 547s Copyright (C) 2025 The R Foundation for Statistical Computing 547s Platform: aarch64-unknown-linux-gnu 547s 547s R is free software and comes with ABSOLUTELY NO WARRANTY. 547s You are welcome to redistribute it under certain conditions. 547s Type 'license()' or 'licence()' for distribution details. 547s 547s R is a collaborative project with many contributors. 547s Type 'contributors()' for more information and 547s 'citation()' on how to cite R or R packages in publications. 547s 547s Type 'demo()' for some demos, 'help()' for on-line help, or 547s 'help.start()' for an HTML browser interface to help. 547s Type 'q()' to quit R. 547s 547s > library(sp) 547s > library(gstat) 548s > 548s > data(meuse) 548s > coordinates(meuse) = ~x+y 548s > data(meuse.grid) 548s > gridded(meuse.grid) = ~x+y 548s > 548s > mg = meuse.grid 548s > gridded(mg) = FALSE 548s > mg= mg[1500,] 548s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 548s + vdist=FALSE, maxdist=1000, nmax = 9) 548s [using ordinary kriging] 548s coordinates var1.pred var1.var 548s 1500 (180260, 331300) 5.024413 1.114475 548s > 548s > ## IGNORE_RDIFF_BEGIN 548s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 548s + vdist=TRUE, maxdist=1000, nmax = 9) 548s [using ordinary kriging] 548s coordinates var1.pred var1.var 548s 1500 (180260, 331300) 5.568531 1.112945 548s > ## IGNORE_RDIFF_END 548s > 548s autopkgtest [15:40:36]: test run-unit-test: -----------------------] 549s autopkgtest [15:40:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 549s run-unit-test PASS 549s autopkgtest [15:40:37]: test pkg-r-autopkgtest: preparing testbed 549s Reading package lists... 550s Building dependency tree... 550s Reading state information... 550s Starting pkgProblemResolver with broken count: 0 550s Starting 2 pkgProblemResolver with broken count: 0 550s Done 551s The following NEW packages will be installed: 551s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 551s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 551s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 551s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 551s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 551s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 551s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 551s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 551s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 551s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 551s r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 551s r-cran-checkmate r-cran-crayon r-cran-data.table r-cran-fs 551s r-cran-future.batchtools r-cran-hms r-cran-prettyunits r-cran-progress 551s r-cran-rappdirs r-cran-stringi zlib1g-dev 551s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded. 551s Need to get 98.3 MB of archives. 551s After this operation, 345 MB of additional disk space will be used. 551s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 552s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 552s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 564s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 564s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 564s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 564s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 564s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 564s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 568s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 569s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 572s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 573s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 575s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 578s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 601s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 602s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 602s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 602s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 605s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 618s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 618s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 618s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 618s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 618s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 618s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 619s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 631s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 631s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 631s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 631s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 632s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 632s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 632s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 632s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 646s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 646s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 646s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 646s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 651s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 651s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 651s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 651s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 652s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 652s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 652s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 653s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 654s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 654s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 654s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 654s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 654s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 654s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 654s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 654s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 654s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64url arm64 1.4-2build1 [26.4 kB] 655s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 655s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-checkmate arm64 2.3.2-1 [706 kB] 655s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 658s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 658s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 658s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 658s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 658s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 658s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 659s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 659s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-batchtools arm64 0.9.17+dfsg-1 [712 kB] 660s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 661s Fetched 98.3 MB in 1min 49s (900 kB/s) 661s Selecting previously unselected package libisl23:arm64. 661s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 91075 files and directories currently installed.) 661s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 661s Unpacking libisl23:arm64 (0.27-1) ... 661s Selecting previously unselected package libmpc3:arm64. 661s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 661s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 661s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 661s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 661s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 661s Selecting previously unselected package cpp-14. 661s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 661s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 661s Selecting previously unselected package cpp-aarch64-linux-gnu. 661s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 661s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 661s Selecting previously unselected package cpp. 661s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 661s Unpacking cpp (4:14.2.0-1ubuntu1) ... 661s Selecting previously unselected package libcc1-0:arm64. 661s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package libitm1:arm64. 661s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 661s Selecting previously unselected package libasan8:arm64. 661s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_arm64.deb ... 661s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 662s Selecting previously unselected package liblsan0:arm64. 662s Preparing to unpack .../09-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 662s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 662s Selecting previously unselected package libtsan2:arm64. 662s Preparing to unpack .../10-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 662s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 662s Selecting previously unselected package libubsan1:arm64. 662s Preparing to unpack .../11-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 662s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 662s Selecting previously unselected package libhwasan0:arm64. 662s Preparing to unpack .../12-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 662s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 662s Selecting previously unselected package libgcc-14-dev:arm64. 662s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 662s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 662s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 662s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 662s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 662s Selecting previously unselected package gcc-14. 662s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 662s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 662s Selecting previously unselected package gcc-aarch64-linux-gnu. 662s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 662s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 662s Selecting previously unselected package gcc. 663s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 663s Unpacking gcc (4:14.2.0-1ubuntu1) ... 663s Selecting previously unselected package libstdc++-14-dev:arm64. 663s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 663s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 663s Selecting previously unselected package g++-14-aarch64-linux-gnu. 663s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 663s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 663s Selecting previously unselected package g++-14. 663s Preparing to unpack .../20-g++-14_14.2.0-17ubuntu3_arm64.deb ... 663s Unpacking g++-14 (14.2.0-17ubuntu3) ... 663s Selecting previously unselected package g++-aarch64-linux-gnu. 663s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 663s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 663s Selecting previously unselected package g++. 663s Preparing to unpack .../22-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 663s Unpacking g++ (4:14.2.0-1ubuntu1) ... 663s Selecting previously unselected package build-essential. 663s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 663s Unpacking build-essential (12.10ubuntu1) ... 663s Selecting previously unselected package dctrl-tools. 663s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 663s Unpacking dctrl-tools (2.24-3build3) ... 663s Selecting previously unselected package libgfortran-14-dev:arm64. 663s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 663s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 663s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 663s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 663s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 664s Selecting previously unselected package gfortran-14. 664s Preparing to unpack .../27-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 664s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 664s Selecting previously unselected package gfortran-aarch64-linux-gnu. 664s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 664s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 664s Selecting previously unselected package gfortran. 664s Preparing to unpack .../29-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 664s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 664s Selecting previously unselected package icu-devtools. 664s Preparing to unpack .../30-icu-devtools_76.1-1ubuntu2_arm64.deb ... 664s Unpacking icu-devtools (76.1-1ubuntu2) ... 664s Selecting previously unselected package libblas-dev:arm64. 664s Preparing to unpack .../31-libblas-dev_3.12.1-2_arm64.deb ... 664s Unpacking libblas-dev:arm64 (3.12.1-2) ... 664s Selecting previously unselected package libbz2-dev:arm64. 664s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 664s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 664s Selecting previously unselected package libdeflate-dev:arm64. 664s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 664s Unpacking libdeflate-dev:arm64 (1.23-1) ... 664s Selecting previously unselected package libicu-dev:arm64. 664s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 664s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 664s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 664s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 664s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 664s Selecting previously unselected package libjpeg8-dev:arm64. 664s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 664s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 664s Selecting previously unselected package libjpeg-dev:arm64. 664s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 664s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 664s Selecting previously unselected package liblapack-dev:arm64. 664s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 664s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 664s Selecting previously unselected package libncurses-dev:arm64. 665s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 665s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 665s Selecting previously unselected package libpcre2-16-0:arm64. 665s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 665s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 665s Selecting previously unselected package libpcre2-32-0:arm64. 665s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 665s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 665s Selecting previously unselected package libpcre2-posix3:arm64. 665s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 665s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 665s Selecting previously unselected package libpcre2-dev:arm64. 665s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 665s Unpacking libpcre2-dev:arm64 (10.45-1) ... 665s Selecting previously unselected package libpkgconf3:arm64. 665s Preparing to unpack .../44-libpkgconf3_1.8.1-4_arm64.deb ... 665s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 665s Selecting previously unselected package zlib1g-dev:arm64. 665s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 665s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 665s Selecting previously unselected package libpng-dev:arm64. 665s Preparing to unpack .../46-libpng-dev_1.6.47-1_arm64.deb ... 665s Unpacking libpng-dev:arm64 (1.6.47-1) ... 665s Selecting previously unselected package libreadline-dev:arm64. 665s Preparing to unpack .../47-libreadline-dev_8.2-6_arm64.deb ... 665s Unpacking libreadline-dev:arm64 (8.2-6) ... 665s Selecting previously unselected package liblzma-dev:arm64. 665s Preparing to unpack .../48-liblzma-dev_5.6.4-1_arm64.deb ... 665s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 665s Selecting previously unselected package pkgconf-bin. 665s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ... 665s Unpacking pkgconf-bin (1.8.1-4) ... 665s Selecting previously unselected package pkgconf:arm64. 665s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ... 665s Unpacking pkgconf:arm64 (1.8.1-4) ... 665s Selecting previously unselected package libtirpc-dev:arm64. 665s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 665s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 665s Selecting previously unselected package r-base-dev. 665s Preparing to unpack .../52-r-base-dev_4.4.3-1_all.deb ... 665s Unpacking r-base-dev (4.4.3-1) ... 665s Selecting previously unselected package pkg-r-autopkgtest. 665s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 665s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 665s Selecting previously unselected package r-cran-backports. 665s Preparing to unpack .../54-r-cran-backports_1.5.0-2_arm64.deb ... 665s Unpacking r-cran-backports (1.5.0-2) ... 665s Selecting previously unselected package r-cran-base64url. 665s Preparing to unpack .../55-r-cran-base64url_1.4-2build1_arm64.deb ... 665s Unpacking r-cran-base64url (1.4-2build1) ... 665s Selecting previously unselected package r-cran-brew. 665s Preparing to unpack .../56-r-cran-brew_1.0-10-1_all.deb ... 665s Unpacking r-cran-brew (1.0-10-1) ... 665s Selecting previously unselected package r-cran-checkmate. 665s Preparing to unpack .../57-r-cran-checkmate_2.3.2-1_arm64.deb ... 665s Unpacking r-cran-checkmate (2.3.2-1) ... 665s Selecting previously unselected package r-cran-data.table. 665s Preparing to unpack .../58-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ... 665s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 666s Selecting previously unselected package r-cran-fs. 666s Preparing to unpack .../59-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 666s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 666s Selecting previously unselected package r-cran-crayon. 666s Preparing to unpack .../60-r-cran-crayon_1.5.3-1_all.deb ... 666s Unpacking r-cran-crayon (1.5.3-1) ... 666s Selecting previously unselected package r-cran-hms. 666s Preparing to unpack .../61-r-cran-hms_1.1.3-1_all.deb ... 666s Unpacking r-cran-hms (1.1.3-1) ... 666s Selecting previously unselected package r-cran-prettyunits. 666s Preparing to unpack .../62-r-cran-prettyunits_1.2.0-1_all.deb ... 666s Unpacking r-cran-prettyunits (1.2.0-1) ... 666s Selecting previously unselected package r-cran-progress. 666s Preparing to unpack .../63-r-cran-progress_1.2.3-1_all.deb ... 666s Unpacking r-cran-progress (1.2.3-1) ... 666s Selecting previously unselected package r-cran-rappdirs. 666s Preparing to unpack .../64-r-cran-rappdirs_0.3.3-1_arm64.deb ... 666s Unpacking r-cran-rappdirs (0.3.3-1) ... 666s Selecting previously unselected package r-cran-stringi. 666s Preparing to unpack .../65-r-cran-stringi_1.8.4-1build1_arm64.deb ... 666s Unpacking r-cran-stringi (1.8.4-1build1) ... 666s Selecting previously unselected package r-cran-batchtools. 666s Preparing to unpack .../66-r-cran-batchtools_0.9.17+dfsg-1_arm64.deb ... 666s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 666s Selecting previously unselected package r-cran-future.batchtools. 666s Preparing to unpack .../67-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 666s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 666s Setting up r-cran-fs (1.6.5+dfsg-1) ... 666s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 666s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 666s Setting up r-cran-backports (1.5.0-2) ... 666s Setting up r-cran-prettyunits (1.2.0-1) ... 666s Setting up r-cran-checkmate (2.3.2-1) ... 666s Setting up libreadline-dev:arm64 (8.2-6) ... 666s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 666s Setting up libpcre2-16-0:arm64 (10.45-1) ... 666s Setting up libpcre2-32-0:arm64 (10.45-1) ... 666s Setting up r-cran-brew (1.0-10-1) ... 666s Setting up libtirpc-dev:arm64 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666s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 666s Setting up gcc (4:14.2.0-1ubuntu1) ... 666s Setting up g++ (4:14.2.0-1ubuntu1) ... 666s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 666s Setting up build-essential (12.10ubuntu1) ... 666s Setting up gfortran (4:14.2.0-1ubuntu1) ... 666s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 666s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 666s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 666s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 666s Setting up r-base-dev (4.4.3-1) ... 666s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 666s Processing triggers for libc-bin (2.41-1ubuntu2) ... 666s Processing triggers for man-db (2.13.0-1) ... 667s Processing triggers for install-info (7.1.1-1) ... 668s autopkgtest [15:42:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 668s autopkgtest [15:42:36]: test pkg-r-autopkgtest: [----------------------- 668s Test: Try to load the R library gstat 668s 668s R version 4.4.3 (2025-02-28) -- "Trophy Case" 668s Copyright (C) 2025 The R Foundation for Statistical Computing 668s Platform: aarch64-unknown-linux-gnu 668s 668s R is free software and comes with ABSOLUTELY NO WARRANTY. 668s You are welcome to redistribute it under certain conditions. 668s Type 'license()' or 'licence()' for distribution details. 668s 668s R is a collaborative project with many contributors. 668s Type 'contributors()' for more information and 668s 'citation()' on how to cite R or R packages in publications. 668s 668s Type 'demo()' for some demos, 'help()' for on-line help, or 668s 'help.start()' for an HTML browser interface to help. 668s Type 'q()' to quit R. 668s 669s > library('gstat') 669s > 669s > 669s Other tests are currently unsupported! 669s They will be progressively added. 669s autopkgtest [15:42:37]: test pkg-r-autopkgtest: -----------------------] 670s pkg-r-autopkgtest PASS 670s autopkgtest [15:42:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 670s autopkgtest [15:42:38]: @@@@@@@@@@@@@@@@@@@@ summary 670s run-unit-test PASS 670s pkg-r-autopkgtest PASS 690s nova [W] Using flock in prodstack6-arm64 690s Creating nova instance adt-plucky-arm64-r-cran-gstat-20250315-153128-juju-7f2275-prod-proposed-migration-environment-2-bee65453-ee77-469f-9c8a-72da07c5e056 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 690s nova [W] Timed out waiting for 54c3430e-ff3a-4a20-a646-5eaf189717aa to get deleted.