0s autopkgtest [23:47:18]: starting date and time: 2024-11-01 23:47:18+0000 0s autopkgtest [23:47:18]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:47:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gl8jpvj7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-sf --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-sf/1.0-17+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-39.secgroup --name adt-plucky-arm64-r-cran-gstat-20241101-234718-juju-7f2275-prod-proposed-migration-environment-2-b5946998-67ed-4f99-b8c2-58bd7ef5fb1e --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 68s autopkgtest [23:48:26]: testbed dpkg architecture: arm64 68s autopkgtest [23:48:26]: testbed apt version: 2.9.8 68s autopkgtest [23:48:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 69s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2639 kB] 70s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [176 kB] 70s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 70s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [41.0 kB] 70s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [230 kB] 70s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 70s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [1932 kB] 70s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [34.6 kB] 70s Fetched 5184 kB in 2s (3443 kB/s) 71s Reading package lists... 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s Calculating upgrade... 75s The following packages will be upgraded: 75s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 75s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 75s libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano 75s python3-lazr.uri 75s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Need to get 594 kB of archives. 75s After this operation, 19.5 kB of additional disk space will be used. 75s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libevdev2 arm64 1.13.3+dfsg-1 [36.0 kB] 75s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpipeline1 arm64 1.5.8-1 [30.6 kB] 75s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 nano arm64 8.2-1 [289 kB] 76s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-utils3 arm64 3.2.0-2 [18.8 kB] 76s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-crypto3 arm64 3.2.0-2 [22.6 kB] 76s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-fs3 arm64 3.2.0-2 [35.8 kB] 76s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-loop3 arm64 3.2.0-2 [7276 B] 76s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-mdraid3 arm64 3.2.0-2 [12.8 kB] 76s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-nvme3 arm64 3.2.0-2 [17.2 kB] 76s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-part3 arm64 3.2.0-2 [14.9 kB] 76s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-swap3 arm64 3.2.0-2 [7832 B] 76s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev3 arm64 3.2.0-2 [52.4 kB] 76s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libftdi1-2 arm64 1.5-7 [28.4 kB] 76s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libinih1 arm64 58-1ubuntu1 [7412 B] 76s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lazr.uri all 1.0.6-4 [13.6 kB] 76s Fetched 594 kB in 1s (1073 kB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 77s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_arm64.deb ... 77s Unpacking libevdev2:arm64 (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 77s Preparing to unpack .../01-libpipeline1_1.5.8-1_arm64.deb ... 77s Unpacking libpipeline1:arm64 (1.5.8-1) over (1.5.7-2) ... 77s Preparing to unpack .../02-nano_8.2-1_arm64.deb ... 77s Unpacking nano (8.2-1) over (8.1-1) ... 77s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-utils3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-crypto3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-fs3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-loop3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-mdraid3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-nvme3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-part3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev-swap3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../11-libblockdev3_3.2.0-2_arm64.deb ... 77s Unpacking libblockdev3:arm64 (3.2.0-2) over (3.1.1-2) ... 77s Preparing to unpack .../12-libftdi1-2_1.5-7_arm64.deb ... 77s Unpacking libftdi1-2:arm64 (1.5-7) over (1.5-6build5) ... 77s Preparing to unpack .../13-libinih1_58-1ubuntu1_arm64.deb ... 77s Unpacking libinih1:arm64 (58-1ubuntu1) over (55-1ubuntu2) ... 77s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ... 77s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 77s Setting up libpipeline1:arm64 (1.5.8-1) ... 77s Setting up libinih1:arm64 (58-1ubuntu1) ... 77s Setting up python3-lazr.uri (1.0.6-4) ... 78s Setting up libftdi1-2:arm64 (1.5-7) ... 78s Setting up libblockdev-utils3:arm64 (3.2.0-2) ... 78s Setting up libblockdev-nvme3:arm64 (3.2.0-2) ... 78s Setting up nano (8.2-1) ... 78s Setting up libblockdev-fs3:arm64 (3.2.0-2) ... 78s Setting up libevdev2:arm64 (1.13.3+dfsg-1) ... 78s Setting up libblockdev-mdraid3:arm64 (3.2.0-2) ... 78s Setting up libblockdev-crypto3:arm64 (3.2.0-2) ... 78s Setting up libblockdev-swap3:arm64 (3.2.0-2) ... 78s Setting up libblockdev-loop3:arm64 (3.2.0-2) ... 78s Setting up libblockdev3:arm64 (3.2.0-2) ... 78s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 78s Setting up libblockdev-part3:arm64 (3.2.0-2) ... 78s Processing triggers for libc-bin (2.40-1ubuntu3) ... 78s Processing triggers for man-db (2.12.1-3) ... 79s Processing triggers for install-info (7.1.1-1) ... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 81s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 81s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 83s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 84s Calculating upgrade... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s autopkgtest [23:48:48]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 90s autopkgtest [23:48:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 92s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 92s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 92s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 92s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 92s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 92s gpgv: issuer "tille@debian.org" 92s gpgv: Can't check signature: No public key 92s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 92s autopkgtest [23:48:50]: testing package r-cran-gstat version 2.1-1-2 93s autopkgtest [23:48:51]: build not needed 95s autopkgtest [23:48:53]: test run-unit-test: preparing testbed 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 97s The following additional packages will be installed: 97s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 97s gdal-plugins libaec0 libaom3 libarmadillo14 libarpack2t64 libblas3 libblosc1 97s libcairo2 libcfitsio10t64 libdatrie1 libde265-0 libdeflate0 libfontconfig1 97s libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.12.2 libgeotiff5 97s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 97s libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec 97s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 97s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 97s libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 97s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 97s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler140 97s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 98s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 98s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 98s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 98s libxt6t64 littler mysql-common proj-data r-base-core r-cran-abind 98s r-cran-class r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest 98s r-cran-dotcall64 r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future 98s r-cran-future.apply r-cran-globals r-cran-gstat r-cran-intervals 98s r-cran-kernsmooth r-cran-lattice r-cran-listenv r-cran-littler 98s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-parallelly 98s r-cran-pkgkitten r-cran-proxy r-cran-raster r-cran-rcpp r-cran-rlang 98s r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam 98s r-cran-stars r-cran-terra r-cran-units r-cran-viridislite r-cran-wk 98s r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 98s Suggested packages: 98s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 98s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 98s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 98s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 98s liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 98s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rmysql 98s r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr r-cran-rmarkdown 98s r-cran-mapproj r-cran-inline 98s Recommended packages: 98s proj-bin libheif-plugin-aomenc poppler-data r-recommended r-base-dev 98s r-doc-html r-cran-spdata r-cran-knitr r-cran-rmarkdown r-cran-tinytest 98s r-cran-rhpcblasctl r-cran-rcolorbrewer r-cran-roxygen2 r-cran-testthat 98s r-cran-r.rsp r-cran-markdown r-cran-r.utils r-cran-crayon r-cran-cba 98s r-cran-ncdf4 r-cran-igraph r-cran-exactextractr r-cran-cli r-cran-covr 98s r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble r-cran-usethis 98s r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob r-cran-nanoarrow 98s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix 98s r-cran-microbenchmark r-cran-pbapply r-cran-rpostgresql r-cran-rsqlite 98s r-cran-spatstat r-cran-spatstat.geom r-cran-spatstat.random 98s r-cran-spatstat.linnet r-cran-spatstat.utils r-cran-tidyr r-cran-tidyselect 98s r-cran-ncmeta r-cran-deldir r-cran-foreign r-cran-plm r-cran-googlevis 98s r-cran-isocodes r-cran-truncdist r-cran-cairo r-cran-pcict r-cran-rnetcdf 98s r-cran-clue r-cran-cubelyr r-cran-ggforce r-cran-ggthemes r-cran-httr 98s r-cran-jsonlite r-cran-ncdfgeom r-cran-randomforest r-cran-viridis 98s r-cran-xml r-cran-htmlwidgets r-cran-xml2 r-cran-vdiffr r-cran-readr 98s r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 98s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 98s x11-xserver-utils 98s The following NEW packages will be installed: 98s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 98s fonts-dejavu-mono gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 98s libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 98s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgdal35 98s libgeos-c1t64 libgeos3.12.2 libgeotiff5 libgfortran5 libgif7 libgomp1 98s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 98s libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 98s libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 libkmldom1t64 98s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1t64 98s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 98s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 98s libpaper-utils libpaper1 libpixman-1-0 libpoppler140 libpq5 libproj25 98s libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 98s libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 98s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 98s libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler 98s mysql-common proj-data r-base-core r-cran-abind r-cran-class r-cran-classint 98s r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 98s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-globals 98s r-cran-gstat r-cran-intervals r-cran-kernsmooth r-cran-lattice 98s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 98s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-raster 98s r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp 98s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-units 98s r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip 98s x11-common xdg-utils zip 98s 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 141 MB/141 MB of archives. 98s After this operation, 304 MB of additional disk space will be used. 98s Get:1 /tmp/autopkgtest.XT5ZVL/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B] 98s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 98s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 98s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 98s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 98s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 98s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-data all 3.9.1+dfsg-1build2 [269 kB] 98s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-plugins arm64 3.9.1+dfsg-1build2 [25.3 kB] 98s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 98s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.9.1-1 [1651 kB] 99s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 99s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-7ubuntu1 [438 kB] 99s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 99s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-1.1ubuntu1 [94.3 kB] 99s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build3 [170 kB] 99s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarmadillo14 arm64 1:14.0.1+dfsg-2 [105 kB] 99s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 99s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 99s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 99s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 99s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 99s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 99s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 99s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcfitsio10t64 arm64 4.4.1-2 [511 kB] 99s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 99s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB] 99s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.21-1 [46.2 kB] 99s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB] 99s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [23.1 kB] 99s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB] 99s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos3.12.2 arm64 3.12.2-1 [831 kB] 99s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos-c1t64 arm64 3.12.2-1 [88.5 kB] 99s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.4.1-1 [7892 kB] 99s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 99s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 99s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 99s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 99s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 99s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 99s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 99s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.4.1-1 [1294 kB] 100s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeotiff5 arm64 1.7.3-1 [60.8 kB] 100s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB] 100s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 100s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB] 100s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 100s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.18.1-2 [10.9 kB] 100s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.18.1-2 [8612 B] 100s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.18.1-2 [274 kB] 100s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 liburiparser1 arm64 0.9.8+dfsg-1 [35.4 kB] 100s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB] 100s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB] 100s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB] 100s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 mysql-common all 5.8+1.1.1 [6800 B] 100s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libmysqlclient21 arm64 8.0.39-1 [1239 kB] 100s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 100s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB] 100s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 100s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbc2 arm64 2.3.12-1ubuntu1 [145 kB] 100s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 100s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbcinst2 arm64 2.3.12-1ubuntu1 [29.8 kB] 100s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libogdi4.1 arm64 4.1.1+ds-4 [211 kB] 100s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 100s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 100s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libpoppler140 arm64 24.08.0-1 [1111 kB] 100s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.0-1 [248 kB] 100s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 100s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB] 100s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB] 100s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3 [874 kB] 100s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgdal35 arm64 3.9.1+dfsg-1build2 [8650 kB] 100s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-7ubuntu1 [145 kB] 100s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 100s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 9.0.0-1 [486 kB] 100s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 100s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 100s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 100s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 100s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.54.0+ds-2 [233 kB] 100s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-2 [48.8 kB] 100s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-2 [27.5 kB] 100s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 100s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 100s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 100s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 100s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 100s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 100s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 100s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 100s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB] 100s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 100s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14 [172 kB] 101s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 101s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 101s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB] 102s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 102s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-1 [2486 B] 102s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 102s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-61-1 [1107 kB] 102s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-class arm64 7.3-22-2build1 [88.3 kB] 102s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 102s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 102s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-24-1 [92.6 kB] 102s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 102s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 102s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 102s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.36-1 [197 kB] 102s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dotcall64 arm64 1.1-1-1 [38.5 kB] 102s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 102s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.13-1 [1981 kB] 102s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spam arm64 2.10-0-1 [2759 kB] 102s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 102s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 102s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fields arm64 16.2-1 [4391 kB] 103s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 103s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-globals all 0.16.3-1 [120 kB] 103s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 103s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-parallelly arm64 1.37.1-1build1 [365 kB] 103s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 103s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 103s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 103s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 103s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 103s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 103s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 103s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-s2 arm64 1.1.6-1build2 [1947 kB] 103s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 103s Get:128 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-sf arm64 1.0-17+dfsg-1 [3232 kB] 103s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 103s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 103s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 103s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spacetime all 1.3-1-1 [2804 kB] 103s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB] 104s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stars all 0.6-6-1 [4105 kB] 104s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gstat arm64 2.1-1-2 [2338 kB] 104s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 104s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-terra arm64 1.7-78-1 [3661 kB] 104s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 105s Preconfiguring packages ... 105s Fetched 141 MB in 7s (20.4 MB/s) 105s Selecting previously unselected package fonts-dejavu-mono. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 106s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 106s Unpacking fonts-dejavu-mono (2.37-8) ... 106s Selecting previously unselected package fonts-dejavu-core. 106s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 106s Unpacking fonts-dejavu-core (2.37-8) ... 106s Selecting previously unselected package fontconfig-config. 106s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 106s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 106s Selecting previously unselected package libfontconfig1:arm64. 106s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 106s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 106s Selecting previously unselected package fontconfig. 106s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 106s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 106s Selecting previously unselected package gdal-data. 106s Preparing to unpack .../005-gdal-data_3.9.1+dfsg-1build2_all.deb ... 106s Unpacking gdal-data (3.9.1+dfsg-1build2) ... 106s Selecting previously unselected package gdal-plugins:arm64. 106s Preparing to unpack .../006-gdal-plugins_3.9.1+dfsg-1build2_arm64.deb ... 106s Unpacking gdal-plugins:arm64 (3.9.1+dfsg-1build2) ... 106s Selecting previously unselected package libaec0:arm64. 106s Preparing to unpack .../007-libaec0_1.1.3-1_arm64.deb ... 106s Unpacking libaec0:arm64 (1.1.3-1) ... 106s Selecting previously unselected package libaom3:arm64. 106s Preparing to unpack .../008-libaom3_3.9.1-1_arm64.deb ... 106s Unpacking libaom3:arm64 (3.9.1-1) ... 106s Selecting previously unselected package libblas3:arm64. 106s Preparing to unpack .../009-libblas3_3.12.0-3build2_arm64.deb ... 106s Unpacking libblas3:arm64 (3.12.0-3build2) ... 106s Selecting previously unselected package libgfortran5:arm64. 106s Preparing to unpack .../010-libgfortran5_14.2.0-7ubuntu1_arm64.deb ... 106s Unpacking libgfortran5:arm64 (14.2.0-7ubuntu1) ... 106s Selecting previously unselected package liblapack3:arm64. 106s Preparing to unpack .../011-liblapack3_3.12.0-3build2_arm64.deb ... 106s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 106s Selecting previously unselected package libarpack2t64:arm64. 106s Preparing to unpack .../012-libarpack2t64_3.9.1-1.1ubuntu1_arm64.deb ... 106s Unpacking libarpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 106s Selecting previously unselected package libsuperlu6:arm64. 107s Preparing to unpack .../013-libsuperlu6_6.0.1+dfsg1-1build3_arm64.deb ... 107s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build3) ... 107s Selecting previously unselected package libarmadillo14. 107s Preparing to unpack .../014-libarmadillo14_1%3a14.0.1+dfsg-2_arm64.deb ... 107s Unpacking libarmadillo14 (1:14.0.1+dfsg-2) ... 107s Selecting previously unselected package libsnappy1v5:arm64. 107s Preparing to unpack .../015-libsnappy1v5_1.2.1-1_arm64.deb ... 107s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 107s Selecting previously unselected package libblosc1:arm64. 107s Preparing to unpack .../016-libblosc1_1.21.5+ds-1build1_arm64.deb ... 107s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 107s Selecting previously unselected package libpixman-1-0:arm64. 107s Preparing to unpack .../017-libpixman-1-0_0.42.2-1build1_arm64.deb ... 107s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 107s Selecting previously unselected package libxcb-render0:arm64. 107s Preparing to unpack .../018-libxcb-render0_1.17.0-2_arm64.deb ... 107s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 107s Selecting previously unselected package libxcb-shm0:arm64. 107s Preparing to unpack .../019-libxcb-shm0_1.17.0-2_arm64.deb ... 107s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 107s Selecting previously unselected package libxrender1:arm64. 107s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 107s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 107s Selecting previously unselected package libcairo2:arm64. 107s Preparing to unpack .../021-libcairo2_1.18.2-2_arm64.deb ... 107s Unpacking libcairo2:arm64 (1.18.2-2) ... 107s Selecting previously unselected package libcfitsio10t64:arm64. 107s Preparing to unpack .../022-libcfitsio10t64_4.4.1-2_arm64.deb ... 107s Unpacking libcfitsio10t64:arm64 (4.4.1-2) ... 107s Selecting previously unselected package libdatrie1:arm64. 107s Preparing to unpack .../023-libdatrie1_0.2.13-3build1_arm64.deb ... 107s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 107s Selecting previously unselected package libde265-0:arm64. 107s Preparing to unpack .../024-libde265-0_1.0.15-1build4_arm64.deb ... 107s Unpacking libde265-0:arm64 (1.0.15-1build4) ... 107s Selecting previously unselected package libdeflate0:arm64. 107s Preparing to unpack .../025-libdeflate0_1.21-1_arm64.deb ... 107s Unpacking libdeflate0:arm64 (1.21-1) ... 107s Selecting previously unselected package libfyba0t64:arm64. 107s Preparing to unpack .../026-libfyba0t64_4.1.1-11build1_arm64.deb ... 107s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ... 107s Selecting previously unselected package libminizip1t64:arm64. 107s Preparing to unpack .../027-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 107s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 107s Selecting previously unselected package libfreexl1:arm64. 107s Preparing to unpack .../028-libfreexl1_2.0.0-1build2_arm64.deb ... 107s Unpacking libfreexl1:arm64 (2.0.0-1build2) ... 107s Selecting previously unselected package libgeos3.12.2:arm64. 108s Preparing to unpack .../029-libgeos3.12.2_3.12.2-1_arm64.deb ... 108s Unpacking libgeos3.12.2:arm64 (3.12.2-1) ... 108s Selecting previously unselected package libgeos-c1t64:arm64. 108s Preparing to unpack .../030-libgeos-c1t64_3.12.2-1_arm64.deb ... 108s Unpacking libgeos-c1t64:arm64 (3.12.2-1) ... 108s Selecting previously unselected package proj-data. 108s Preparing to unpack .../031-proj-data_9.4.1-1_all.deb ... 108s Unpacking proj-data (9.4.1-1) ... 108s Selecting previously unselected package libjbig0:arm64. 108s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 108s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 108s Selecting previously unselected package libjpeg-turbo8:arm64. 108s Preparing to unpack .../033-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 108s Unpacking libjpeg-turbo8:arm64 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libproj25:arm64. 108s Preparing to unpack .../039-libproj25_9.4.1-1_arm64.deb ... 108s Unpacking libproj25:arm64 (9.4.1-1) ... 108s Selecting previously unselected package libgeotiff5:arm64. 108s Preparing to unpack .../040-libgeotiff5_1.7.3-1_arm64.deb ... 108s Unpacking libgeotiff5:arm64 (1.7.3-1) ... 108s Selecting previously unselected package libgif7:arm64. 108s Preparing to unpack .../041-libgif7_5.2.2-1ubuntu1_arm64.deb ... 108s Unpacking libgif7:arm64 (5.2.2-1ubuntu1) ... 108s Selecting previously unselected package libsz2:arm64. 108s Preparing to unpack .../042-libsz2_1.1.3-1_arm64.deb ... 108s Unpacking libsz2:arm64 (1.1.3-1) ... 108s Selecting previously unselected package libhdf4-0-alt:arm64. 108s Preparing to unpack .../043-libhdf4-0-alt_4.3.0-1_arm64.deb ... 108s Unpacking libhdf4-0-alt:arm64 (4.3.0-1) ... 108s Selecting previously unselected package libhdf5-103-1t64:arm64. 108s Preparing to unpack .../044-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 108s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 108s Selecting previously unselected package libheif-plugin-aomdec:arm64. 108s Preparing to unpack .../045-libheif-plugin-aomdec_1.18.1-2_arm64.deb ... 108s Unpacking libheif-plugin-aomdec:arm64 (1.18.1-2) ... 108s Selecting previously unselected package libheif-plugin-libde265:arm64. 109s Preparing to unpack .../046-libheif-plugin-libde265_1.18.1-2_arm64.deb ... 109s Unpacking libheif-plugin-libde265:arm64 (1.18.1-2) ... 109s Selecting previously unselected package libheif1:arm64. 109s Preparing to unpack .../047-libheif1_1.18.1-2_arm64.deb ... 109s Unpacking libheif1:arm64 (1.18.1-2) ... 109s Selecting previously unselected package liburiparser1:arm64. 109s Preparing to unpack .../048-liburiparser1_0.9.8+dfsg-1_arm64.deb ... 109s Unpacking liburiparser1:arm64 (0.9.8+dfsg-1) ... 109s Selecting previously unselected package libkmlbase1t64:arm64. 109s Preparing to unpack .../049-libkmlbase1t64_1.3.0-12build1_arm64.deb ... 109s Unpacking libkmlbase1t64:arm64 (1.3.0-12build1) ... 109s Selecting previously unselected package libkmldom1t64:arm64. 109s Preparing to unpack .../050-libkmldom1t64_1.3.0-12build1_arm64.deb ... 109s Unpacking libkmldom1t64:arm64 (1.3.0-12build1) ... 109s Selecting previously unselected package libkmlengine1t64:arm64. 109s Preparing to unpack .../051-libkmlengine1t64_1.3.0-12build1_arm64.deb ... 109s Unpacking libkmlengine1t64:arm64 (1.3.0-12build1) ... 109s Selecting previously unselected package mysql-common. 109s Preparing to unpack .../052-mysql-common_5.8+1.1.1_all.deb ... 109s Unpacking mysql-common (5.8+1.1.1) ... 109s Selecting previously unselected package libmysqlclient21:arm64. 109s Preparing to unpack .../053-libmysqlclient21_8.0.39-1_arm64.deb ... 109s Unpacking libmysqlclient21:arm64 (8.0.39-1) ... 109s Selecting previously unselected package libhdf5-hl-100t64:arm64. 109s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 109s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 109s Selecting previously unselected package libnetcdf19t64:arm64. 109s Preparing to unpack .../055-libnetcdf19t64_1%3a4.9.2-6ubuntu1_arm64.deb ... 109s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 109s Selecting previously unselected package libltdl7:arm64. 109s Preparing to unpack .../056-libltdl7_2.4.7-7build1_arm64.deb ... 109s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 109s Selecting previously unselected package libodbc2:arm64. 109s Preparing to unpack .../057-libodbc2_2.3.12-1ubuntu1_arm64.deb ... 109s Unpacking libodbc2:arm64 (2.3.12-1ubuntu1) ... 109s Selecting previously unselected package unixodbc-common. 109s Preparing to unpack .../058-unixodbc-common_2.3.12-1ubuntu1_all.deb ... 109s Unpacking unixodbc-common (2.3.12-1ubuntu1) ... 109s Selecting previously unselected package libodbcinst2:arm64. 109s Preparing to unpack .../059-libodbcinst2_2.3.12-1ubuntu1_arm64.deb ... 109s Unpacking libodbcinst2:arm64 (2.3.12-1ubuntu1) ... 109s Selecting previously unselected package libogdi4.1:arm64. 109s Preparing to unpack .../060-libogdi4.1_4.1.1+ds-4_arm64.deb ... 109s Unpacking libogdi4.1:arm64 (4.1.1+ds-4) ... 109s Selecting previously unselected package libopenjp2-7:arm64. 109s Preparing to unpack .../061-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 109s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 109s Selecting previously unselected package liblcms2-2:arm64. 109s Preparing to unpack .../062-liblcms2-2_2.14-2build1_arm64.deb ... 109s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 109s Selecting previously unselected package libpoppler140:arm64. 109s Preparing to unpack .../063-libpoppler140_24.08.0-1_arm64.deb ... 109s Unpacking libpoppler140:arm64 (24.08.0-1) ... 109s Selecting previously unselected package libpq5:arm64. 109s Preparing to unpack .../064-libpq5_17.0-1_arm64.deb ... 109s Unpacking libpq5:arm64 (17.0-1) ... 109s Selecting previously unselected package libqhull-r8.0:arm64. 110s Preparing to unpack .../065-libqhull-r8.0_2020.2-6build1_arm64.deb ... 110s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 110s Selecting previously unselected package librttopo1:arm64. 110s Preparing to unpack .../066-librttopo1_1.1.0-3build2_arm64.deb ... 110s Unpacking librttopo1:arm64 (1.1.0-3build2) ... 110s Selecting previously unselected package libspatialite8t64:arm64. 110s Preparing to unpack .../067-libspatialite8t64_5.1.0-3build1_arm64.deb ... 110s Unpacking libspatialite8t64:arm64 (5.1.0-3build1) ... 110s Selecting previously unselected package libxerces-c3.2t64:arm64. 110s Preparing to unpack .../068-libxerces-c3.2t64_3.2.4+debian-1.3_arm64.deb ... 110s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3) ... 110s Selecting previously unselected package libgdal35:arm64. 110s Preparing to unpack .../069-libgdal35_3.9.1+dfsg-1build2_arm64.deb ... 110s Unpacking libgdal35:arm64 (3.9.1+dfsg-1build2) ... 110s Selecting previously unselected package libgomp1:arm64. 110s Preparing to unpack .../070-libgomp1_14.2.0-7ubuntu1_arm64.deb ... 110s Unpacking libgomp1:arm64 (14.2.0-7ubuntu1) ... 110s Selecting previously unselected package libgraphite2-3:arm64. 110s Preparing to unpack .../071-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 110s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 110s Selecting previously unselected package libharfbuzz0b:arm64. 110s Preparing to unpack .../072-libharfbuzz0b_9.0.0-1_arm64.deb ... 110s Unpacking libharfbuzz0b:arm64 (9.0.0-1) ... 110s Selecting previously unselected package x11-common. 110s Preparing to unpack .../073-x11-common_1%3a7.7+23ubuntu3_all.deb ... 110s Unpacking x11-common (1:7.7+23ubuntu3) ... 110s Selecting previously unselected package libice6:arm64. 110s Preparing to unpack .../074-libice6_2%3a1.0.10-1build3_arm64.deb ... 110s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 110s Selecting previously unselected package libthai-data. 110s Preparing to unpack .../075-libthai-data_0.1.29-2build1_all.deb ... 110s Unpacking libthai-data (0.1.29-2build1) ... 110s Selecting previously unselected package libthai0:arm64. 110s Preparing to unpack .../076-libthai0_0.1.29-2build1_arm64.deb ... 110s Unpacking libthai0:arm64 (0.1.29-2build1) ... 110s Selecting previously unselected package libpango-1.0-0:arm64. 110s Preparing to unpack .../077-libpango-1.0-0_1.54.0+ds-2_arm64.deb ... 110s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-2) ... 110s Selecting previously unselected package libpangoft2-1.0-0:arm64. 110s Preparing to unpack .../078-libpangoft2-1.0-0_1.54.0+ds-2_arm64.deb ... 110s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-2) ... 110s Selecting previously unselected package libpangocairo-1.0-0:arm64. 110s Preparing to unpack .../079-libpangocairo-1.0-0_1.54.0+ds-2_arm64.deb ... 110s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-2) ... 110s Selecting previously unselected package libpaper1:arm64. 110s Preparing to unpack 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(1:1.2.3-1build3) ... 111s Selecting previously unselected package libtk8.6:arm64. 111s Preparing to unpack .../086-libtk8.6_8.6.14-1build1_arm64.deb ... 111s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 111s Selecting previously unselected package libudunits2-data. 111s Preparing to unpack .../087-libudunits2-data_2.2.28-7build1_all.deb ... 111s Unpacking libudunits2-data (2.2.28-7build1) ... 111s Selecting previously unselected package libudunits2-0. 111s Preparing to unpack .../088-libudunits2-0_2.2.28-7build1_arm64.deb ... 111s Unpacking libudunits2-0 (2.2.28-7build1) ... 111s Selecting previously unselected package libxt6t64:arm64. 111s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 111s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 111s Selecting previously unselected package zip. 111s Preparing to unpack .../090-zip_3.0-14_arm64.deb ... 111s Unpacking zip (3.0-14) ... 111s Selecting previously unselected package unzip. 111s Preparing to unpack .../091-unzip_6.0-28ubuntu6_arm64.deb ... 111s Unpacking unzip (6.0-28ubuntu6) ... 111s Selecting previously unselected package xdg-utils. 111s Preparing to unpack .../092-xdg-utils_1.2.1-0ubuntu1_all.deb ... 111s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 111s Selecting previously unselected package r-base-core. 111s Preparing to unpack .../093-r-base-core_4.4.1-1_arm64.deb ... 111s Unpacking r-base-core (4.4.1-1) ... 111s Selecting previously unselected package r-cran-littler. 111s Preparing to unpack .../094-r-cran-littler_0.3.20-1_arm64.deb ... 111s Unpacking r-cran-littler (0.3.20-1) ... 111s Selecting previously unselected package littler. 111s Preparing to unpack .../095-littler_0.3.20-1_all.deb ... 111s Unpacking littler (0.3.20-1) ... 111s Selecting previously unselected package r-cran-abind. 112s Preparing to unpack .../096-r-cran-abind_1.4-5-2_all.deb ... 112s Unpacking r-cran-abind (1.4-5-2) ... 112s Selecting previously unselected package r-cran-mass. 112s Preparing to unpack .../097-r-cran-mass_7.3-61-1_arm64.deb ... 112s Unpacking r-cran-mass (7.3-61-1) ... 112s Selecting previously unselected package r-cran-class. 112s Preparing to unpack .../098-r-cran-class_7.3-22-2build1_arm64.deb ... 112s Unpacking r-cran-class (7.3-22-2build1) ... 112s Selecting previously unselected package r-cran-proxy. 112s Preparing to unpack .../099-r-cran-proxy_0.4-27-1_arm64.deb ... 112s Unpacking r-cran-proxy (0.4-27-1) ... 112s Selecting previously unselected package r-cran-e1071. 112s Preparing to unpack .../100-r-cran-e1071_1.7-14-1_arm64.deb ... 112s Unpacking r-cran-e1071 (1.7-14-1) ... 112s Selecting previously unselected package r-cran-kernsmooth. 112s Preparing to unpack .../101-r-cran-kernsmooth_2.23-24-1_arm64.deb ... 112s Unpacking r-cran-kernsmooth (2.23-24-1) ... 112s Selecting previously unselected package r-cran-classint. 112s Preparing to unpack .../102-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 112s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 112s Selecting previously unselected package r-cran-codetools. 112s Preparing to unpack .../103-r-cran-codetools_0.2-20-1_all.deb ... 112s Unpacking r-cran-codetools (0.2-20-1) ... 112s Selecting previously unselected package r-cran-dbi. 112s Preparing to unpack .../104-r-cran-dbi_1.2.3-1_all.deb ... 112s Unpacking r-cran-dbi (1.2.3-1) ... 112s Selecting previously unselected package r-cran-digest. 112s Preparing to unpack .../105-r-cran-digest_0.6.36-1_arm64.deb ... 112s Unpacking r-cran-digest (0.6.36-1) ... 112s Selecting previously unselected package r-cran-dotcall64. 112s Preparing to unpack .../106-r-cran-dotcall64_1.1-1-1_arm64.deb ... 112s Unpacking r-cran-dotcall64 (1.1-1-1) ... 112s Selecting previously unselected package r-cran-pkgkitten. 112s Preparing to unpack .../107-r-cran-pkgkitten_0.2.4-1_all.deb ... 112s Unpacking r-cran-pkgkitten (0.2.4-1) ... 112s Selecting previously unselected package r-cran-rcpp. 112s Preparing to unpack .../108-r-cran-rcpp_1.0.13-1_arm64.deb ... 112s Unpacking r-cran-rcpp (1.0.13-1) ... 112s Selecting previously unselected package r-cran-spam. 112s Preparing to unpack .../109-r-cran-spam_2.10-0-1_arm64.deb ... 112s Unpacking r-cran-spam (2.10-0-1) ... 112s Selecting previously unselected package r-cran-viridislite. 112s Preparing to unpack .../110-r-cran-viridislite_0.4.2-2_all.deb ... 112s Unpacking r-cran-viridislite (0.4.2-2) ... 112s Selecting previously unselected package r-cran-maps. 112s Preparing to unpack .../111-r-cran-maps_3.4.2-1_arm64.deb ... 112s Unpacking r-cran-maps (3.4.2-1) ... 112s Selecting previously unselected package r-cran-fields. 112s Preparing to unpack .../112-r-cran-fields_16.2-1_arm64.deb ... 112s Unpacking r-cran-fields (16.2-1) ... 112s Selecting previously unselected package r-cran-fnn. 112s Preparing to unpack .../113-r-cran-fnn_1.1.4-1_arm64.deb ... 112s Unpacking r-cran-fnn (1.1.4-1) ... 112s Selecting previously unselected package r-cran-globals. 112s Preparing to unpack .../114-r-cran-globals_0.16.3-1_all.deb ... 112s Unpacking r-cran-globals (0.16.3-1) ... 113s Selecting previously unselected package r-cran-listenv. 113s Preparing to unpack .../115-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 113s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 113s Selecting previously unselected package r-cran-parallelly. 113s Preparing to unpack .../116-r-cran-parallelly_1.37.1-1build1_arm64.deb ... 113s Unpacking r-cran-parallelly (1.37.1-1build1) ... 113s Selecting previously unselected package r-cran-future. 113s Preparing to unpack .../117-r-cran-future_1.33.1+dfsg-1_all.deb ... 113s Unpacking r-cran-future (1.33.1+dfsg-1) ... 113s Selecting previously unselected package r-cran-future.apply. 113s Preparing to unpack .../118-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 113s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 113s Selecting previously unselected package r-cran-lattice. 113s Preparing to unpack .../119-r-cran-lattice_0.22-6-1_arm64.deb ... 113s Unpacking 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118s Processing triggers for man-db (2.12.1-3) ... 118s Processing triggers for install-info (7.1.1-1) ... 127s (Reading database ... 86255 files and directories currently installed.) 127s Removing autopkgtest-satdep (0) ... 128s autopkgtest [23:49:26]: test run-unit-test: [----------------------- 128s BEGIN TEST allier.R 128s 128s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 128s Copyright (C) 2024 The R Foundation for Statistical Computing 128s Platform: aarch64-unknown-linux-gnu 128s 128s R is free software and comes with ABSOLUTELY NO WARRANTY. 128s You are welcome to redistribute it under certain conditions. 128s Type 'license()' or 'licence()' for distribution details. 128s 128s R is a collaborative project with many contributors. 128s Type 'contributors()' for more information and 128s 'citation()' on how to cite R or R packages in publications. 128s 128s Type 'demo()' for some demos, 'help()' for on-line help, or 128s 'help.start()' for an HTML browser interface to help. 128s Type 'q()' to quit R. 128s 128s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 128s > library(sp) 128s > library(gstat) 129s > 129s > # some data 129s > x <- c(215, 330, 410, 470, 545) 129s > y <- c(230, 310, 330, 340, 365) 129s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 129s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 129s > Allier <- data.frame(x, y, fc, por) 129s > coordinates(Allier) = ~x+y 129s > 129s > # gstat object for co-kriging using linear model of co-regionalization 129s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 129s + model=vgm(0.00247, "Sph", 480, 0.00166)) 129s > g <- gstat(g, id="por", formula=por~1, data=Allier, 129s + model=vgm(0.00239, "Sph", 480, 0.00118)) 129s > g <- gstat(g, id=c("fc", "por"), 129s + model=vgm(0.00151, "Sph", 480, -0.00124)) 129s > 129s > # predict at single point 129s > g$set = list(choleski = 0) # LDL' 129s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 129s Linear Model of Coregionalization found. Good. 129s [using ordinary cokriging] 129s we're at location X: 450 Y: 350 Z: 0 129s zero block size 129s we're at point X: 450 Y: 350 Z: 0 129s 129s # X: 129s #Matrix: 10 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 1.000000, 0.000000), # row 2 129s c( 1.000000, 0.000000), # row 3 129s c( 1.000000, 0.000000), # row 4 129s c( 1.000000, 0.000000), # row 5 129s c( 0.000000, 1.000000), # row 6 129s c( 0.000000, 1.000000), # row 7 129s c( 0.000000, 1.000000), # row 8 129s c( 0.000000, 1.000000), # row 9 129s c( 0.000000, 1.000000) # row 10 129s ) 129s [using generalized covariances: max_val - semivariance()] 129s # Covariances (x_i, x_j) matrix C (upper triangle): 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 129s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 129s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 129s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 129s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 129s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 129s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 129s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 129s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 129s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 129s ) 129s 129s # glm->C, LDL' decomposed:: 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 129s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 129s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 129s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 129s ) 129s 129s # X'C-1 X: 129s #Matrix: 2 by 2 129s rbind( 129s c(665.433994, -232.313340), # row 1 129s c(-232.313340, 729.440848) # row 2 129s ) 129s 129s # beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Cov(beta), (X'C-1 X)-1: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001691, 0.000538), # row 1 129s c( 0.000538, 0.001542) # row 2 129s ) 129s 129s # Corr(beta): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.333447), # row 1 129s c( 0.333447, 1.000000) # row 2 129s ) 129s 129s # X0 (X values at prediction location x0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 0.000000, 1.000000) # row 2 129s ) 129s 129s # BLUE(mu), E(y(x0)) = X0'beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Covariances (x_i, x_0), C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.000638, 0.000390), # row 1 129s c( 0.001516, 0.000927), # row 2 129s c( 0.002126, 0.001300), # row 3 129s c( 0.002298, 0.001405), # row 4 129s c( 0.001738, 0.001062), # row 5 129s c( 0.000390, 0.000618), # row 6 129s c( 0.000927, 0.001467), # row 7 129s c( 0.001300, 0.002057), # row 8 129s c( 0.001405, 0.002223), # row 9 129s c( 0.001062, 0.001681) # row 10 129s ) 129s 129s # C-1 C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.008927, -0.017995), # row 1 129s c( 0.061935, -0.028550), # row 2 129s c( 0.225195, 0.078344), # row 3 129s c( 0.356735, 0.190177), # row 4 129s c( 0.094128, -0.023136), # row 5 129s c(-0.021119, 0.004935), # row 6 129s c(-0.033508, 0.055601), # row 7 129s c( 0.091947, 0.242576), # row 8 129s c( 0.223200, 0.398927), # row 9 129s c(-0.027153, 0.088995) # row 10 129s ) 129s 129s # [a] Cov_ij(B,B) or Cov_ij(0,0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.004130, 0.000270), # row 1 129s c( 0.000270, 0.003570) # row 2 129s ) 129s 129s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.000129, -0.000107), # row 1 129s c(-0.000107, 0.000089) # row 2 129s ) 129s 129s # [b] c0'C-1 c0: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001926, 0.001532), # row 1 129s c( 0.001532, 0.001931) # row 2 129s ) 129s 129s # Best Linear Unbiased Predictor: 129s #Vector: dim: 2 129s c( 0.253090, 0.441258) 129s # MSPE ([a]-[b]+[c]): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.002332, -0.001369), # row 1 129s c(-0.001369, 0.001729) # row 2 129s ) 129s 129s # kriging weights: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.071177, -0.064988), # row 1 129s c( 0.108451, -0.066123), # row 2 129s c( 0.268160, 0.043141), # row 3 129s c( 0.401959, 0.153312), # row 4 129s c( 0.150253, -0.065342), # row 5 129s c(-0.076273, 0.056759), # row 6 129s c(-0.077605, 0.093781), # row 7 129s c( 0.050632, 0.277731), # row 8 129s c( 0.179933, 0.435972), # row 9 129s c(-0.076688, 0.135756) # row 10 129s ) 129s 129s 129s > g$set = list(choleski = 1) # Choleski 129s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 129s Linear Model of Coregionalization found. Good. 129s [using ordinary cokriging] 129s we're at location X: 450 Y: 350 Z: 0 129s zero block size 129s we're at point X: 450 Y: 350 Z: 0 129s 129s # X: 129s #Matrix: 10 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 1.000000, 0.000000), # row 2 129s c( 1.000000, 0.000000), # row 3 129s c( 1.000000, 0.000000), # row 4 129s c( 1.000000, 0.000000), # row 5 129s c( 0.000000, 1.000000), # row 6 129s c( 0.000000, 1.000000), # row 7 129s c( 0.000000, 1.000000), # row 8 129s c( 0.000000, 1.000000), # row 9 129s c( 0.000000, 1.000000) # row 10 129s ) 129s [using generalized covariances: max_val - semivariance()] 129s # Covariances (x_i, x_j) matrix C (upper triangle): 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 129s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 129s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 129s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 129s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 129s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 129s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 129s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 129s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 129s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 129s ) 129s 129s # glm->C, Choleski decomposed:: 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 129s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 129s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 129s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 129s ) 129s 129s # X'C-1 X: 129s #Matrix: 2 by 2 129s rbind( 129s c(665.433994, -232.313340), # row 1 129s c(-232.313340, 729.440848) # row 2 129s ) 129s 129s # beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Cov(beta), (X'C-1 X)-1: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001691, 0.000538), # row 1 129s c( 0.000538, 0.001542) # row 2 129s ) 129s 129s # Corr(beta): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.333447), # row 1 129s c( 0.333447, 1.000000) # row 2 129s ) 129s 129s # X0 (X values at prediction location x0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 0.000000, 1.000000) # row 2 129s ) 129s 129s # BLUE(mu), E(y(x0)) = X0'beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Covariances (x_i, x_0), C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.000638, 0.000390), # row 1 129s c( 0.001516, 0.000927), # row 2 129s c( 0.002126, 0.001300), # row 3 129s c( 0.002298, 0.001405), # row 4 129s c( 0.001738, 0.001062), # row 5 129s c( 0.000390, 0.000618), # row 6 129s c( 0.000927, 0.001467), # row 7 129s c( 0.001300, 0.002057), # row 8 129s c( 0.001405, 0.002223), # row 9 129s c( 0.001062, 0.001681) # row 10 129s ) 129s 129s # C-1 C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.008927, -0.017995), # row 1 129s c( 0.061935, -0.028550), # row 2 129s c( 0.225195, 0.078344), # row 3 129s c( 0.356735, 0.190177), # row 4 129s c( 0.094128, -0.023136), # row 5 129s c(-0.021119, 0.004935), # row 6 129s c(-0.033508, 0.055601), # row 7 129s c( 0.091947, 0.242576), # row 8 129s c( 0.223200, 0.398927), # row 9 129s c(-0.027153, 0.088995) # row 10 129s ) 129s 129s # [a] Cov_ij(B,B) or Cov_ij(0,0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.004130, 0.000270), # row 1 129s c( 0.000270, 0.003570) # row 2 129s ) 129s 129s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.000129, -0.000107), # row 1 129s c(-0.000107, 0.000089) # row 2 129s ) 129s 129s # [b] c0'C-1 c0: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001926, 0.001532), # row 1 129s c( 0.001532, 0.001931) # row 2 129s ) 129s 129s # Best Linear Unbiased Predictor: 129s #Vector: dim: 2 129s c( 0.253090, 0.441258) 129s # MSPE ([a]-[b]+[c]): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.002332, -0.001369), # row 1 129s c(-0.001369, 0.001729) # row 2 129s ) 129s 129s # kriging weights: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.071177, -0.064988), # row 1 129s c( 0.108451, -0.066123), # row 2 129s c( 0.268160, 0.043141), # row 3 129s c( 0.401959, 0.153312), # row 4 129s c( 0.150253, -0.065342), # row 5 129s c(-0.076273, 0.056759), # row 6 129s c(-0.077605, 0.093781), # row 7 129s c( 0.050632, 0.277731), # row 8 129s c( 0.179933, 0.435972), # row 9 129s c(-0.076688, 0.135756) # row 10 129s ) 129s 129s 129s > all.equal(A,B) 129s [1] TRUE 129s > 129s > # TRUE 129s > 129s BEGIN TEST blockkr.R 129s 129s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 129s Copyright (C) 2024 The R Foundation for Statistical Computing 129s Platform: aarch64-unknown-linux-gnu 129s 129s R is free software and comes with ABSOLUTELY NO WARRANTY. 129s You are welcome to redistribute it under certain conditions. 129s Type 'license()' or 'licence()' for distribution details. 129s 129s R is a collaborative project with many contributors. 129s Type 'contributors()' for more information and 129s 'citation()' on how to cite R or R packages in publications. 129s 129s Type 'demo()' for some demos, 'help()' for on-line help, or 129s 'help.start()' for an HTML browser interface to help. 129s Type 'q()' to quit R. 129s 129s > library(sp) 130s > data(meuse) 130s > coordinates(meuse) = c("x", "y") 130s > new.locs <- SpatialPoints(data.frame( 130s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 130s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 130s > library(gstat) 130s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 130s + block = c(40,40), nmax = 40) 131s [using ordinary kriging] 131s coordinates var1.pred var1.var 131s 1 (181170, 333250) 268.7576 19447.67 131s 2 (180310, 332189) 663.4915 16991.33 131s 3 (180205, 331707) 251.4606 21579.71 131s 4 (178673, 330066) 532.5776 73807.91 131s 5 (178770, 330675) 664.4039 23589.17 131s 6 (178270, 331075) 565.5436 155113.23 131s > 131s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 131s > 131s > disc = c(-15,-5,5,15) 131s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 131s > block.irreg 131s x y 131s 1 -15 -15 131s 2 -5 -15 131s 3 5 -15 131s 4 15 -15 131s 5 -15 -5 131s 6 -5 -5 131s 7 5 -5 131s 8 15 -5 131s 9 -15 5 131s 10 -5 5 131s 11 5 5 131s 12 15 5 131s 13 -15 15 131s 14 -5 15 131s 15 5 15 131s 16 15 15 131s > 131s > # first disable default Gaussian quadrature used for block integration, by 131s > # setting nblockdiscr explicitly: 131s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 131s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 131s [using ordinary kriging] 131s coordinates var1.pred var1.var 131s 1 (181170, 333250) 268.7324 19568.76 131s > # now pass the same block discretization as block.irreg: 131s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 131s + block = block.irreg, nmax = 40) 131s [using ordinary kriging] 131s coordinates var1.pred var1.var 131s 1 (181170, 333250) 268.7324 19568.76 131s > # check weights argument: 131s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 131s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 131s + block = block.irreg, nmax = 40) 131s [using ordinary kriging] 131s coordinates var1.pred var1.var 131s 1 (181170, 333250) 268.7324 19568.76 131s > 131s BEGIN TEST covtable.R 131s 131s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 131s Copyright (C) 2024 The R Foundation for Statistical Computing 131s Platform: aarch64-unknown-linux-gnu 131s 131s R is free software and comes with ABSOLUTELY NO WARRANTY. 131s You are welcome to redistribute it under certain conditions. 131s Type 'license()' or 'licence()' for distribution details. 131s 131s R is a collaborative project with many contributors. 131s Type 'contributors()' for more information and 131s 'citation()' on how to cite R or R packages in publications. 131s 131s Type 'demo()' for some demos, 'help()' for on-line help, or 131s 'help.start()' for an HTML browser interface to help. 131s Type 'q()' to quit R. 131s 131s > library(gstat) 131s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 131s > d$z=1:4 131s > vv=vgm(model = "Tab", covtable = 131s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 131s > vv 131s model psill maxdist 131s 1 Tab NA 1 131s covariance table: 131s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 131s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 2.5 1.017767 132s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 2.5 1.017863 132s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 1.5 1.267767 132s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 1.5 1.267863 132s > 132s BEGIN TEST cv.R 132s 132s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 132s Copyright (C) 2024 The R Foundation for Statistical Computing 132s Platform: aarch64-unknown-linux-gnu 132s 132s R is free software and comes with ABSOLUTELY NO WARRANTY. 132s You are welcome to redistribute it under certain conditions. 132s Type 'license()' or 'licence()' for distribution details. 132s 132s R is a collaborative project with many contributors. 132s Type 'contributors()' for more information and 132s 'citation()' on how to cite R or R packages in publications. 132s 132s Type 'demo()' for some demos, 'help()' for on-line help, or 132s 'help.start()' for an HTML browser interface to help. 132s Type 'q()' to quit R. 132s 132s > # try bivariate cokriging; cross validate first variable 132s > library(sp) 132s > data(meuse) 132s > library(gstat) 133s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 133s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 133s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 133s > v=variogram(g) 133s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 133s > g=fit.lmc(v, g) 133s > g 133s data: 133s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 133s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 133s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 133s variograms: 133s model psill range 133s log-zinc Sph 0.7132435 1000 133s log-lead Sph 0.6133020 1000 133s log-copper Sph 0.3634211 1000 133s log-zinc.log-lead Sph 0.6367012 1000 133s log-zinc.log-copper Sph 0.4570044 1000 133s log-lead.log-copper Sph 0.3934910 1000 133s ~x + y 133s > set.seed(13131) 133s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s log.zinc.pred log.zinc.var observed residual 133s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 133s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 133s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 133s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 133s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 133s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 133s zscore fold x y 133s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 133s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 133s Median :-0.10755 Median :3.000 Median :179991 Median :331633 133s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 133s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 133s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 133s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 133s Warning message: 133s In checkNames(value) : 133s attempt to set invalid names: this may lead to problems later on. See ?make.names 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 134s Intrinsic Correlation found. Good. 134s [using ordinary cokriging] 134s Warning message: 134s In checkNames(value) : 134s attempt to set invalid names: this may lead to problems later on. See ?make.names 134s log.zinc.pred log.zinc.var observed residual 134s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 134s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 134s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 134s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 134s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 134s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 134s zscore fold x y 134s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 134s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 134s Median : 0.007242 Median :3.000 Median :179991 Median :331633 134s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 134s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 134s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 134s > 134s BEGIN TEST cv3d.R 134s 134s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 134s Copyright (C) 2024 The R Foundation for Statistical Computing 134s Platform: aarch64-unknown-linux-gnu 134s 134s R is free software and comes with ABSOLUTELY NO WARRANTY. 134s You are welcome to redistribute it under certain conditions. 134s Type 'license()' or 'licence()' for distribution details. 134s 134s R is a collaborative project with many contributors. 134s Type 'contributors()' for more information and 134s 'citation()' on how to cite R or R packages in publications. 134s 134s Type 'demo()' for some demos, 'help()' for on-line help, or 134s 'help.start()' for an HTML browser interface to help. 134s Type 'q()' to quit R. 134s 134s > options(digits = 4) 134s > set.seed(1131) 134s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 134s > library(gstat) 134s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 135s > summary(xx) 135s var1.pred var1.var observed residual 135s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 135s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 135s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 135s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 135s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 135s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 135s zscore fold x y 135s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 135s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 135s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 135s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 135s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 135s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 135s z 135s Min. :0.0016 135s 1st Qu.:0.1865 135s Median :0.4485 135s Mean :0.4714 135s 3rd Qu.:0.7240 135s Max. :0.9942 135s > 135s BEGIN TEST fit.R 135s 135s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 135s Copyright (C) 2024 The R Foundation for Statistical Computing 135s Platform: aarch64-unknown-linux-gnu 135s 135s R is free software and comes with ABSOLUTELY NO WARRANTY. 135s You are welcome to redistribute it under certain conditions. 135s Type 'license()' or 'licence()' for distribution details. 135s 135s R is a collaborative project with many contributors. 135s Type 'contributors()' for more information and 135s 'citation()' on how to cite R or R packages in publications. 135s 135s Type 'demo()' for some demos, 'help()' for on-line help, or 135s 'help.start()' for an HTML browser interface to help. 135s Type 'q()' to quit R. 135s 136s > library(sp) 136s > data(meuse) 136s > library(gstat) 136s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 137s > v$gamma=c(0.5,1,2,3,3) 137s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 137s model psill range 137s 1 Nug 0.000000 0.00 137s 2 Sph 7.878195 1567.77 137s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 137s Warning message: 137s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 137s partial sill or nugget fixed at zero value 137s model psill range 137s 1 Nug 0.000000 0.00 137s 2 Sph 7.878195 1567.77 137s > 137s BEGIN TEST krige0.R 137s 137s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 137s Copyright (C) 2024 The R Foundation for Statistical Computing 137s Platform: aarch64-unknown-linux-gnu 137s 137s R is free software and comes with ABSOLUTELY NO WARRANTY. 137s You are welcome to redistribute it under certain conditions. 137s Type 'license()' or 'licence()' for distribution details. 137s 137s R is a collaborative project with many contributors. 137s Type 'contributors()' for more information and 137s 'citation()' on how to cite R or R packages in publications. 137s 137s Type 'demo()' for some demos, 'help()' for on-line help, or 137s 'help.start()' for an HTML browser interface to help. 137s Type 'q()' to quit R. 137s 137s > # test -- load data: 137s > library(sp) 137s > data(meuse) 137s > coordinates(meuse) = ~x+y 137s > data(meuse.grid) 137s > gridded(meuse.grid) = ~x+y 137s > 137s > library(gstat) 138s > # test -- idw 138s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 138s > x <- idw(zinc~1, meuse, meuse.grid) 138s [inverse distance weighted interpolation] 138s > all.equal(x$var1.pred, meuse.grid$idw) 138s [1] TRUE 138s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 138s > v = vgm(1, "Exp", 500) 138s > # test sk: 138s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 138s > rownames(x0$pred)=NULL 138s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 138s [using simple kriging] 139s > all.equal(x$var1.pred, x0$pred[,1]) 139s [1] TRUE 139s > all.equal(x$var1.var, x0$var) 139s [1] TRUE 139s > # test ok: 139s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 139s > rownames(x0$pred)=NULL 139s > names(x0$var)=NULL 139s > x <- krige(zinc~1, meuse, meuse.grid, v) 139s [using ordinary kriging] 139s > all.equal(x$var1.pred, x0$pred[,1]) 139s [1] TRUE 139s > all.equal(x$var1.var, x0$var) 139s [1] TRUE 139s > # test uk: 139s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 139s > rownames(x0$pred)=NULL 139s > names(x0$var)=NULL 139s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 139s [using universal kriging] 139s > all.equal(x$var1.pred, x0$pred[,1]) 139s [1] TRUE 139s > all.equal(x$var1.var, x0$var) 139s [1] TRUE 139s > 139s BEGIN TEST line.R 139s 139s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: aarch64-unknown-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 139s > options(digits=5) 139s > library(sp) 139s > data(meuse.grid) 139s > gridded(meuse.grid) = ~x+y 140s > data(meuse) 140s > coordinates(meuse) = ~x+y 140s > 140s > # choose arbitrary line over the grid: 140s > image(meuse.grid["dist"],axes=T) 140s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 140s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 140s > plot(Sl,add=T,col='green') 140s > 140s > # use the default spsample arguments of predict.gstat: 140s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 140s > plot(pts, pch=3, cex=.2, add=T) 140s > 140s > library(gstat) 140s > v = vgm(.6, "Sph", 900, .06) 140s > out1 = krige(log(zinc)~1, meuse, Sl, v) 140s [using ordinary kriging] 140s > out1 140s An object of class "SpatialLinesDataFrame" 140s Slot "data": 140s x y var1.pred var1.var 140s a 180333 332167 6.1618 0.008025 140s 140s Slot "lines": 140s [[1]] 140s An object of class "Lines" 140s Slot "Lines": 140s [[1]] 140s An object of class "Line" 140s Slot "coords": 140s [,1] [,2] 140s [1,] 180000 331000 140s [2,] 180000 332000 140s [3,] 181000 333500 140s 140s 140s 140s Slot "ID": 140s [1] "a" 140s 140s 140s 140s Slot "bbox": 140s min max 140s x 180000 181000 140s y 331000 333500 140s 140s Slot "proj4string": 140s Coordinate Reference System: 140s Deprecated Proj.4 representation: NA 140s 140s > 140s > points(180333,332167,pch=3,cex=2) 140s > 140s > # use the same line as block discretization, and predict for (0,0) 140s > # (because the block discretizing points are not centered) 140s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 141s [using ordinary kriging] 141s > out2 141s coordinates var1.pred var1.var 141s 1 (0, 0) 6.1618 0.008025 141s > 141s > compare.krigingLines = function(formula, data, newdata, model) { 141s + out1 = krige(formula, data, newdata, model) 141s + pts = spsample(newdata, n=500, 'regular', offset=.5) 141s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 141s + print("difference:") 141s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 141s + } 141s > 141s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 141s [using ordinary kriging] 141s [using ordinary kriging] 141s [1] "difference:" 141s var1.pred var1.var 141s a 0 0 141s > 141s > # one line, consisting of two line segments: 141s > pp2 = rbind(c(181000,333500),c(181000,332500)) 141s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 141s > krige(log(zinc)~1, meuse, Sl2, v) 141s [using ordinary kriging] 141s An object of class "SpatialLinesDataFrame" 141s Slot "data": 141s x y var1.pred var1.var 141s a 180667 332583 6.0424 0.0053191 141s 141s Slot "lines": 141s [[1]] 141s An object of class "Lines" 141s Slot "Lines": 141s [[1]] 141s An object of class "Line" 141s Slot "coords": 141s [,1] [,2] 141s [1,] 180000 331000 141s [2,] 180000 332000 141s [3,] 181000 333500 141s 141s 141s [[2]] 141s An object of class "Line" 141s Slot "coords": 141s [,1] [,2] 141s [1,] 181000 333500 141s [2,] 181000 332500 141s 141s 141s 141s Slot "ID": 141s [1] "a" 141s 141s 141s 141s Slot "bbox": 141s min max 141s x 180000 181000 141s y 331000 333500 141s 141s Slot "proj4string": 141s Coordinate Reference System: 141s Deprecated Proj.4 representation: NA 141s 141s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 141s [using ordinary kriging] 141s [using ordinary kriging] 141s [1] "difference:" 141s var1.pred var1.var 141s a 0 0 141s > 141s > # two seperate line segments: 141s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 141s > krige(log(zinc)~1, meuse, Sl3, v) 141s [using ordinary kriging] 141s An object of class "SpatialLinesDataFrame" 141s Slot "data": 141s x y var1.pred var1.var 141s a 180333 332167 6.1618 0.008025 141s b 181000 333000 5.7060 0.011043 141s 141s Slot "lines": 141s [[1]] 141s An object of class "Lines" 141s Slot "Lines": 141s [[1]] 141s An object of class "Line" 141s Slot "coords": 141s [,1] [,2] 141s [1,] 180000 331000 141s [2,] 180000 332000 141s [3,] 181000 333500 141s 141s 141s 141s Slot "ID": 141s [1] "a" 141s 141s 141s [[2]] 141s An object of class "Lines" 141s Slot "Lines": 141s [[1]] 141s An object of class "Line" 141s Slot "coords": 141s [,1] [,2] 141s [1,] 181000 333500 141s [2,] 181000 332500 141s 141s 141s 141s Slot "ID": 141s [1] "b" 141s 141s 141s 141s Slot "bbox": 141s min max 141s x 180000 181000 141s y 331000 333500 141s 141s Slot "proj4string": 141s Coordinate Reference System: 141s Deprecated Proj.4 representation: NA 141s 141s > 141s BEGIN TEST merge.R 141s 141s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 141s Copyright (C) 2024 The R Foundation for Statistical Computing 141s Platform: aarch64-unknown-linux-gnu 141s 141s R is free software and comes with ABSOLUTELY NO WARRANTY. 141s You are welcome to redistribute it under certain conditions. 141s Type 'license()' or 'licence()' for distribution details. 141s 141s R is a collaborative project with many contributors. 141s Type 'contributors()' for more information and 141s 'citation()' on how to cite R or R packages in publications. 141s 141s Type 'demo()' for some demos, 'help()' for on-line help, or 141s 'help.start()' for an HTML browser interface to help. 141s Type 'q()' to quit R. 141s 141s > options(digits=6) 141s > # illustrates the use of merge, for merging parameters accross variables: 141s > # Z1=m+e1(s) 141s > # Z2=m+e2(s) 141s > # Z1 and Z2 each have a different variogram, but share the parameter m 141s > # see documentation of gstat() function 141s > library(gstat) 141s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 141s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 141s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 141s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 142s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 142s > predict(g, data.frame(x=1,y=1), debug = 32) 142s Intrinsic Correlation found. Good. 142s [using ordinary cokriging] 142s we're at location X: 1 Y: 1 Z: 0 142s zero block size 142s we're at point X: 1 Y: 1 Z: 0 142s 142s # X: 142s #Matrix: 4 by 1 142s rbind( 142s c( 1.000000), # row 1 142s c( 1.000000), # row 2 142s c( 1.000000), # row 3 142s c( 1.000000) # row 4 142s ) 142s [using generalized covariances: max_val - semivariance()] 142s # Covariances (x_i, x_j) matrix C (upper triangle): 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 142s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 142s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 142s ) 142s 142s # glm->C, Choleski decomposed:: 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 142s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 142s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 142s ) 142s 142s # X'C-1 X: 142s #Matrix: 1 by 1 142s rbind( 142s c( 3.245289) # row 1 142s ) 142s 142s # beta: 142s #Vector: dim: 1 142s c( 2.500000) 142s # Cov(beta), (X'C-1 X)-1: 142s #Matrix: 1 by 1 142s rbind( 142s c( 0.308139) # row 1 142s ) 142s 142s # Corr(beta): 142s #Matrix: 1 by 1 142s rbind( 142s c( 1.000000) # row 1 142s ) 142s 142s # X0 (X values at prediction location x0): 142s #Matrix: 1 by 2 142s rbind( 142s c( 1.000000, 1.000000) # row 1 142s ) 142s 142s # BLUE(mu), E(y(x0)) = X0'beta: 142s #Vector: dim: 2 142s c( 2.500000, 2.500000) 142s # Covariances (x_i, x_0), C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.243117, 0.121558), # row 1 142s c( 0.243117, 0.121558), # row 2 142s c( 0.121558, 0.243117), # row 3 142s c( 0.121558, 0.243117) # row 4 142s ) 142s 142s # C-1 C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.206482, 0.089387), # row 1 142s c( 0.206482, 0.089387), # row 2 142s c( 0.089387, 0.206482), # row 3 142s c( 0.089387, 0.206482) # row 4 142s ) 142s 142s # [a] Cov_ij(B,B) or Cov_ij(0,0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 1.000000, 0.500000), # row 1 142s c( 0.500000, 1.000000) # row 2 142s ) 142s 142s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.051360, 0.051360), # row 1 142s c( 0.051360, 0.051360) # row 2 142s ) 142s 142s # [b] c0'C-1 c0: 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.122130, 0.093662), # row 1 142s c( 0.093662, 0.122130) # row 2 142s ) 142s 142s # Best Linear Unbiased Predictor: 142s #Vector: dim: 2 142s c( 2.031619, 2.968381) 142s # MSPE ([a]-[b]+[c]): 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.929230, 0.457698), # row 1 142s c( 0.457698, 0.929230) # row 2 142s ) 142s 142s # kriging weights: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.308548, 0.191452), # row 1 142s c( 0.308548, 0.191452), # row 2 142s c( 0.191452, 0.308548), # row 3 142s c( 0.191452, 0.308548) # row 4 142s ) 142s 142s 142s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 142s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 142s > 142s > # Z1 and Z2 share a regression slope: 142s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 142s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 142s + merge=list(c("d1",2,"d2",2))) 142s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 142s > predict(g, data.frame(x=1,y=1), debug = 32) 142s Intrinsic Correlation found. Good. 142s [using universal cokriging] 142s we're at location X: 1 Y: 1 Z: 0 142s zero block size 142s we're at point X: 1 Y: 1 Z: 0 142s 142s # X: 142s #Matrix: 4 by 3 142s rbind( 142s c( 1.000000, 0.000000, 0.000000), # row 1 142s c( 1.000000, 2.000000, 0.000000), # row 2 142s c( 0.000000, 0.000000, 1.000000), # row 3 142s c( 0.000000, 2.000000, 1.000000) # row 4 142s ) 142s [using generalized covariances: max_val - semivariance()] 142s # Covariances (x_i, x_j) matrix C (upper triangle): 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 142s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 142s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 142s ) 142s 142s # glm->C, Choleski decomposed:: 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 142s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 142s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 142s ) 142s 142s # X'C-1 X: 142s #Matrix: 3 by 3 142s rbind( 142s c( 1.774607, 1.622645, -0.151962), # row 1 142s c( 1.622645, 7.676050, 1.622645), # row 2 142s c(-0.151962, 1.622645, 1.774607) # row 3 142s ) 142s 142s # beta: 142s #Vector: dim: 3 142s c( 0.000000, 0.500000, 4.000000) 142s # Cov(beta), (X'C-1 X)-1: 142s #Matrix: 3 by 3 142s rbind( 142s c( 0.793363, -0.225695, 0.274305), # row 1 142s c(-0.225695, 0.225695, -0.225695), # row 2 142s c( 0.274305, -0.225695, 0.793363) # row 3 142s ) 142s 142s # Corr(beta): 142s #Matrix: 3 by 3 142s rbind( 142s c( 1.000000, -0.533366, 0.345750), # row 1 142s c(-0.533366, 1.000000, -0.533366), # row 2 142s c( 0.345750, -0.533366, 1.000000) # row 3 142s ) 142s 142s # X0 (X values at prediction location x0): 142s #Matrix: 3 by 2 142s rbind( 142s c( 1.000000, 0.000000), # row 1 142s c( 1.000000, 1.000000), # row 2 142s c( 0.000000, 1.000000) # row 3 142s ) 142s 142s # BLUE(mu), E(y(x0)) = X0'beta: 142s #Vector: dim: 2 142s c( 0.500000, 4.500000) 142s # Covariances (x_i, x_0), C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.243117, 0.121558), # row 1 142s c( 0.243117, 0.121558), # row 2 142s c( 0.121558, 0.243117), # row 3 142s c( 0.121558, 0.243117) # row 4 142s ) 142s 142s # C-1 C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.206482, 0.089387), # row 1 142s c( 0.206482, 0.089387), # row 2 142s c( 0.089387, 0.206482), # row 3 142s c( 0.089387, 0.206482) # row 4 142s ) 142s 142s # [a] Cov_ij(B,B) or Cov_ij(0,0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 1.000000, 0.500000), # row 1 142s c( 0.500000, 1.000000) # row 2 142s ) 142s 142s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.203564, -0.100844), # row 1 142s c(-0.100844, 0.203564) # row 2 142s ) 142s 142s # [b] c0'C-1 c0: 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.122130, 0.093662), # row 1 142s c( 0.093662, 0.122130) # row 2 142s ) 142s 142s # Best Linear Unbiased Predictor: 142s #Vector: dim: 2 142s c( 0.500000, 4.500000) 142s # MSPE ([a]-[b]+[c]): 142s #Matrix: 2 by 2 142s rbind( 142s c( 1.081434, 0.305494), # row 1 142s c( 0.305494, 1.081434) # row 2 142s ) 142s 142s # kriging weights: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.500000, 0.000000), # row 1 142s c( 0.500000, 0.000000), # row 2 142s c( 0.000000, 0.500000), # row 3 142s c( 0.000000, 0.500000) # row 4 142s ) 142s 142s 142s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 142s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 142s > 142s BEGIN TEST na.action.R 142s 142s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 142s Copyright (C) 2024 The R Foundation for Statistical Computing 142s Platform: aarch64-unknown-linux-gnu 142s 142s R is free software and comes with ABSOLUTELY NO WARRANTY. 142s You are welcome to redistribute it under certain conditions. 142s Type 'license()' or 'licence()' for distribution details. 142s 142s R is a collaborative project with many contributors. 142s Type 'contributors()' for more information and 142s 'citation()' on how to cite R or R packages in publications. 142s 142s Type 'demo()' for some demos, 'help()' for on-line help, or 142s 'help.start()' for an HTML browser interface to help. 142s Type 'q()' to quit R. 142s 142s > library(sp) 142s > 142s > data(meuse) 142s > data(meuse.grid) 142s > 142s > set.seed(13131) # reproduce results 142s > 142s > # select 10 random rows; 142s > # create two missing values in the coordinates: 142s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 142s > m[c(2,8), "x"] = NA 142s > 142s > library(gstat) 143s > ## this is not allowed anymore: 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 143s > 143s > # select 10 random rows; 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s > # create two missing values in the regressor variable: 143s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 143s > m[c(3,7), "dist"] = NA 143s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 143s [ordinary or weighted least squares prediction] 143s x y var1.pred var1.var 143s 1 178860 330860 6.530134 0.2415196 143s 2 180260 331860 5.389567 0.2406041 143s 3 180100 331860 NA NA 143s 4 180460 331820 5.213370 0.2417197 143s 5 179660 330580 5.550859 0.2398778Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 143s missing values in object 143s 143s 6 179740 330300 6.108648 0.2395392 143s 7 180220 330660 NA NA 143s 8 178580 329820 6.533801 0.2415453 143s 9 180100 331900 5.580264 0.2397758 143s 10 180780 331900 5.095967 0.2426499 143s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 143s [ordinary or weighted least squares prediction] 143s x y var1.pred var1.var 143s 1877 178860 330860 6.530134 0.2415196 143s 1015 180260 331860 5.389567 0.2406041 143s 1056 180460 331820 5.213370 0.2417197 143s 2199 179660 330580 5.550859 0.2398778 143s 2556 179740 330300 6.108648 0.2395392 143s 2985 178580 329820 6.533801 0.2415453 143s 975 180100 331900 5.580264 0.2397758 143s 992 180780 331900 5.095967 0.2426499 143s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 143s [ordinary or weighted least squares prediction] 143s x y var1.pred var1.var 143s 1877 178860 330860 6.530134 0.2415196 143s 1015 180260 331860 5.389567 0.2406041 143s 1056 180460 331820 5.213370 0.2417197 143s 2199 179660 330580 5.550859 0.2398778 143s 2556 179740 330300 6.108648 0.2395392 143s 2985 178580 329820 6.533801 0.2415453 143s 975 180100 331900 5.580264 0.2397758 143s 992 180780 331900 5.095967 0.2426499 143s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 143s > 143s BEGIN TEST rings.R 143s 143s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 143s Copyright (C) 2024 The R Foundation for Statistical Computing 143s Platform: aarch64-unknown-linux-gnu 143s 143s R is free software and comes with ABSOLUTELY NO WARRANTY. 143s You are welcome to redistribute it under certain conditions. 143s Type 'license()' or 'licence()' for distribution details. 143s 143s R is a collaborative project with many contributors. 143s Type 'contributors()' for more information and 143s 'citation()' on how to cite R or R packages in publications. 143s 143s Type 'demo()' for some demos, 'help()' for on-line help, or 143s 'help.start()' for an HTML browser interface to help. 143s Type 'q()' to quit R. 143s 144s > library(sp) 144s > library(gstat) 144s > set.seed(13331) 144s > 144s > x = runif(10) 144s > y = runif(10) 144s > z = rnorm(10) 144s > d = data.frame(x=x,y=y,z=z) 144s > bl = c(1,1) 144s > 144s > nd = data.frame(x=.5, y=.5) 144s > 144s > # single block: 144s > library(sp) 144s > coordinates(d) = ~x+y 144s > nd = SpatialPoints(nd) 144s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 144s + set = list(nb=4)) 145s [using ordinary kriging] 145s > 145s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 145s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 145s > a = data.frame(a = 1, b = 2) 145s > rownames(a) = "xx" 145s > r1df = SpatialPolygonsDataFrame(r1, a) 145s > 145s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 145s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 145s > yy = predict(g, r1df, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > print(all.equal(xx,yy)) 145s [1] TRUE 145s > 145s > ## multiple blocks of equal size: 145s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 145s > nd = SpatialPoints(nd) 145s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 145s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 145s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 145s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 145s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 145s > r1 = SpatialPolygons(list( 145s + Polygons(list(Polygon(ring0)), ID = "x0"), 145s + Polygons(list(Polygon(ring1)), ID = "x1"), 145s + Polygons(list(Polygon(ring2)), ID = "x2"), 145s + Polygons(list(Polygon(ring3)), ID = "x3"), 145s + Polygons(list(Polygon(ring4)), ID = "x4") 145s + )) 145s > df = data.frame(a=rep(1,5), b= rep(1,5)) 145s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 145s > r1df = SpatialPolygonsDataFrame(r1, df) 145s > 145s > yy = predict(g, r1, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > all.equal(xx, yy) 145s [1] TRUE 145s > 145s > ## multiple blocks of equal size: 145s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 145s > yy = predict(g, r1, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > print(all.equal(xx, yy)) 145s [1] TRUE 145s > 145s > ## multiple blocks of varying size: 145s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 145s > nd = SpatialPoints(nd) 145s > bl = c(1,1) 145s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 145s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > bl = c(2,2) 145s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 145s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > bl = c(3,3) 145s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 145s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > r1 = SpatialPolygons(list( 145s + Polygons(list(Polygon(ring0)), ID = "x0"), 145s + Polygons(list(Polygon(ring1)), ID = "x1"), 145s + Polygons(list(Polygon(ring2)), ID = "x2") 145s + )) 145s > df = data.frame(a = rep(1,3), b = rep(1,3)) 145s > rownames(df) = c("x0", "x1", "x2") 145s > r1df = SpatialPolygonsDataFrame(r1, df) 145s > 145s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 145s > yy = predict(g, r1df, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 145s > row.names(xx) = 1:3 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > print(all.equal(xx, yy)) 145s [1] TRUE 145s > 145s BEGIN TEST sim.R 145s 145s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 145s Copyright (C) 2024 The R Foundation for Statistical Computing 145s Platform: aarch64-unknown-linux-gnu 145s 145s R is free software and comes with ABSOLUTELY NO WARRANTY. 145s You are welcome to redistribute it under certain conditions. 145s Type 'license()' or 'licence()' for distribution details. 145s 145s R is a collaborative project with many contributors. 145s Type 'contributors()' for more information and 145s 'citation()' on how to cite R or R packages in publications. 145s 145s Type 'demo()' for some demos, 'help()' for on-line help, or 145s 'help.start()' for an HTML browser interface to help. 145s Type 'q()' to quit R. 145s 145s > options(digits=6) 145s > library(sp) 145s > data(meuse) 145s > set.seed(158229572) 145s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 145s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 145s > library(gstat) 146s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 146s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 146s + block = c(40,40), nmax = 40, nsim = 10) 146s drawing 10 GLS realisations of beta... 146s [using conditional Gaussian simulation] 146s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 146s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 146s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 146s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 146s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 146s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 146s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 146s sim8 sim9 sim10 146s 1 294.107 113.347 279.991 146s 2 776.498 724.160 901.692 146s 3 338.021 630.244 140.272 146s 4 127.301 957.242 444.007 146s 5 533.773 748.144 623.960 146s 6 1084.170 537.604 -214.972 146s > 146s BEGIN TEST stars.R 146s 146s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 146s Copyright (C) 2024 The R Foundation for Statistical Computing 146s Platform: aarch64-unknown-linux-gnu 146s 146s R is free software and comes with ABSOLUTELY NO WARRANTY. 146s You are welcome to redistribute it under certain conditions. 146s Type 'license()' or 'licence()' for distribution details. 146s 146s R is a collaborative project with many contributors. 146s Type 'contributors()' for more information and 146s 'citation()' on how to cite R or R packages in publications. 146s 146s Type 'demo()' for some demos, 'help()' for on-line help, or 146s 'help.start()' for an HTML browser interface to help. 146s Type 'q()' to quit R. 146s 146s > Sys.setenv(TZ = "UTC") 146s > 146s > # 0. using sp: 146s > 146s > suppressPackageStartupMessages(library(sp)) 146s > demo(meuse, ask = FALSE) 146s 146s 146s demo(meuse) 146s ---- ~~~~~ 146s 146s > require(sp) 146s 146s > crs = CRS("EPSG:28992") 147s 147s > data("meuse") 147s 147s > coordinates(meuse) <- ~x+y 147s 147s > proj4string(meuse) <- crs 147s 147s > data("meuse.grid") 147s 147s > coordinates(meuse.grid) <- ~x+y 147s 147s > gridded(meuse.grid) <- TRUE 147s 147s > proj4string(meuse.grid) <- crs 147s 147s > data("meuse.riv") 147s 147s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 147s 147s > proj4string(meuse.riv) <- crs 147s 147s > data("meuse.area") 147s 147s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 147s 147s > proj4string(meuse.area) <- crs 147s > suppressPackageStartupMessages(library(gstat)) 147s > v = variogram(log(zinc)~1, meuse) 147s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 147s model psill range 147s 1 Nug 0.05066243 0.0000 147s 2 Sph 0.59060780 897.0209 147s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 147s [using ordinary kriging] 147s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 148s [using ordinary kriging] 148s > 148s > # 1. using sf: 148s > suppressPackageStartupMessages(library(sf)) 148s > demo(meuse_sf, ask = FALSE, echo = FALSE) 148s > # reloads meuse as data.frame, so 148s > demo(meuse, ask = FALSE) 148s 148s 148s demo(meuse) 148s ---- ~~~~~ 148s 148s > require(sp) 148s 148s > crs = CRS("EPSG:28992") 148s 148s > data("meuse") 148s 148s > coordinates(meuse) <- ~x+y 148s 148s > proj4string(meuse) <- crs 148s 148s > data("meuse.grid") 148s 148s > coordinates(meuse.grid) <- ~x+y 148s 148s > gridded(meuse.grid) <- TRUE 148s 148s > proj4string(meuse.grid) <- crs 148s 148s > data("meuse.riv") 148s 148s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 148s 148s > proj4string(meuse.riv) <- crs 148s 148s > data("meuse.area") 148s 148s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 148s 148s > proj4string(meuse.area) <- crs 148s > 148s > v = variogram(log(zinc)~1, meuse_sf) 148s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 148s model psill range 148s 1 Nug 0.05066243 0.0000 148s 2 Sph 0.59060780 897.0209 148s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 148s [using ordinary kriging] 148s > 148s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 148s [1] TRUE 148s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 148s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 148s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 148s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 148s > 148s > # 2. using stars for grid: 148s > 148s > suppressPackageStartupMessages(library(stars)) 148s > st = st_as_stars(meuse.grid) 148s > st_crs(st) 148s Coordinate Reference System: 148s User input: Amersfoort / RD New 148s wkt: 148s PROJCRS["Amersfoort / RD New", 148s BASEGEOGCRS["Amersfoort", 148s DATUM["Amersfoort", 148s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 148s LENGTHUNIT["metre",1]]], 148s PRIMEM["Greenwich",0, 148s ANGLEUNIT["degree",0.0174532925199433]], 148s ID["EPSG",4289]], 148s CONVERSION["RD New", 148s METHOD["Oblique Stereographic", 148s ID["EPSG",9809]], 148s PARAMETER["Latitude of natural origin",52.1561605555556, 148s ANGLEUNIT["degree",0.0174532925199433], 148s ID["EPSG",8801]], 148s PARAMETER["Longitude of natural origin",5.38763888888889, 148s ANGLEUNIT["degree",0.0174532925199433], 148s ID["EPSG",8802]], 148s PARAMETER["Scale factor at natural origin",0.9999079, 148s SCALEUNIT["unity",1], 148s ID["EPSG",8805]], 148s PARAMETER["False easting",155000, 148s LENGTHUNIT["metre",1], 148s ID["EPSG",8806]], 148s PARAMETER["False northing",463000, 148s LENGTHUNIT["metre",1], 148s ID["EPSG",8807]]], 148s CS[Cartesian,2], 148s AXIS["easting (X)",east, 148s ORDER[1], 148s LENGTHUNIT["metre",1]], 148s AXIS["northing (Y)",north, 148s ORDER[2], 148s LENGTHUNIT["metre",1]], 148s USAGE[ 148s SCOPE["Engineering survey, topographic mapping."], 148s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 148s BBOX[50.75,3.2,53.7,7.22]], 148s ID["EPSG",28992]] 148s > 148s > # compare inputs: 148s > sp = as(st, "Spatial") 148s > fullgrid(meuse.grid) = TRUE 148s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 148s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 148s [2] "Names: 1 string mismatch" 148s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 148s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 148s [2] "Names: 1 string mismatch" 148s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 148s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 148s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 148s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 148s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 148s > 148s > # kriging: 148s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 148s > k_st = if (Sys.getenv("USER") == "travis") { 148s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 148s + } else { 148s + krige(log(zinc)~1, meuse_sf, st, v.fit) 148s + } 148s [using ordinary kriging] 148s > k_st 148s stars object with 2 dimensions and 2 attributes 148s attribute(s): 148s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 148s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 148s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 148s dimension(s): 148s from to offset delta x/y 148s x 1 78 178440 40 [x] 148s y 1 104 333760 -40 [y] 148s > 148s > # handle factors, when going to stars? 148s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 148s > st_as_stars(k_sp_grd) 148s stars object with 2 dimensions and 3 attributes 148s attribute(s): 148s var1.pred var1.var cls 148s Min. :4.777 Min. :0.085 (0,5]: 316 148s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 148s Median :5.573 Median :0.162 (6,7]: 962 148s Mean :5.707 Mean :0.185 (7,8]: 47 148s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 148s Max. :7.440 Max. :0.500 NA's :5009 148s NA's :5009 NA's :5009 148s dimension(s): 148s from to offset delta refsys x/y 148s x 1 78 178440 40 Amersfoort / RD New [x] 148s y 1 104 333760 -40 Amersfoort / RD New [y] 148s > if (require(raster, quietly = TRUE)) { 148s + print(st_as_stars(raster::stack(k_sp_grd))) # check 148s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 148s + } 153s stars object with 3 dimensions and 1 attribute 153s attribute(s): 153s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 153s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 153s dimension(s): 153s from to offset delta refsys values 153s x 1 78 178440 40 Amersfoort / RD New NULL 153s y 1 104 333760 -40 Amersfoort / RD New NULL 153s band 1 3 NA NA NA var1.pred, var1.var , cls 153s x/y 153s x [x] 153s y [y] 153s band 154s [1] TRUE 154s > 154s > suppressPackageStartupMessages(library(spacetime)) 154s > 154s > Sys.setenv(TZ="") 154s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 154s > n = 4 154s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 154s + stars:::create_dimensions(list( 154s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 154s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 154s + time = stars:::create_dimension(values = tm + 1:n)), 154s + raster = stars:::get_raster(dimensions = c("x", "y"))) 154s + ) 154s > s 154s stars object with 3 dimensions and 1 attribute 154s attribute(s): 154s Min. 1st Qu. Median Mean 3rd Qu. Max. 154s foo 1 16.75 32.5 32.5 48.25 64 154s dimension(s): 154s from to offset delta refsys x/y 154s x 1 4 10 0.5 NA [x] 154s y 1 4 0 -0.7 NA [y] 154s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 154s > 154s > as.data.frame(s) 154s x y time foo 154s 1 10.25 -0.35 2019-02-25 15:37:25 1 154s 2 10.75 -0.35 2019-02-25 15:37:25 2 154s 3 11.25 -0.35 2019-02-25 15:37:25 3 154s 4 11.75 -0.35 2019-02-25 15:37:25 4 154s 5 10.25 -1.05 2019-02-25 15:37:25 5 154s 6 10.75 -1.05 2019-02-25 15:37:25 6 154s 7 11.25 -1.05 2019-02-25 15:37:25 7 154s 8 11.75 -1.05 2019-02-25 15:37:25 8 154s 9 10.25 -1.75 2019-02-25 15:37:25 9 154s 10 10.75 -1.75 2019-02-25 15:37:25 10 154s 11 11.25 -1.75 2019-02-25 15:37:25 11 154s 12 11.75 -1.75 2019-02-25 15:37:25 12 154s 13 10.25 -2.45 2019-02-25 15:37:25 13 154s 14 10.75 -2.45 2019-02-25 15:37:25 14 154s 15 11.25 -2.45 2019-02-25 15:37:25 15 154s 16 11.75 -2.45 2019-02-25 15:37:25 16 154s 17 10.25 -0.35 2019-02-25 15:37:26 17 154s 18 10.75 -0.35 2019-02-25 15:37:26 18 154s 19 11.25 -0.35 2019-02-25 15:37:26 19 154s 20 11.75 -0.35 2019-02-25 15:37:26 20 154s 21 10.25 -1.05 2019-02-25 15:37:26 21 154s 22 10.75 -1.05 2019-02-25 15:37:26 22 154s 23 11.25 -1.05 2019-02-25 15:37:26 23 154s 24 11.75 -1.05 2019-02-25 15:37:26 24 154s 25 10.25 -1.75 2019-02-25 15:37:26 25 154s 26 10.75 -1.75 2019-02-25 15:37:26 26 154s 27 11.25 -1.75 2019-02-25 15:37:26 27 154s 28 11.75 -1.75 2019-02-25 15:37:26 28 154s 29 10.25 -2.45 2019-02-25 15:37:26 29 154s 30 10.75 -2.45 2019-02-25 15:37:26 30 154s 31 11.25 -2.45 2019-02-25 15:37:26 31 154s 32 11.75 -2.45 2019-02-25 15:37:26 32 154s 33 10.25 -0.35 2019-02-25 15:37:27 33 154s 34 10.75 -0.35 2019-02-25 15:37:27 34 154s 35 11.25 -0.35 2019-02-25 15:37:27 35 154s 36 11.75 -0.35 2019-02-25 15:37:27 36 154s 37 10.25 -1.05 2019-02-25 15:37:27 37 154s 38 10.75 -1.05 2019-02-25 15:37:27 38 154s 39 11.25 -1.05 2019-02-25 15:37:27 39 154s 40 11.75 -1.05 2019-02-25 15:37:27 40 154s 41 10.25 -1.75 2019-02-25 15:37:27 41 154s 42 10.75 -1.75 2019-02-25 15:37:27 42 154s 43 11.25 -1.75 2019-02-25 15:37:27 43 154s 44 11.75 -1.75 2019-02-25 15:37:27 44 154s 45 10.25 -2.45 2019-02-25 15:37:27 45 154s 46 10.75 -2.45 2019-02-25 15:37:27 46 154s 47 11.25 -2.45 2019-02-25 15:37:27 47 154s 48 11.75 -2.45 2019-02-25 15:37:27 48 154s 49 10.25 -0.35 2019-02-25 15:37:28 49 154s 50 10.75 -0.35 2019-02-25 15:37:28 50 154s 51 11.25 -0.35 2019-02-25 15:37:28 51 154s 52 11.75 -0.35 2019-02-25 15:37:28 52 154s 53 10.25 -1.05 2019-02-25 15:37:28 53 154s 54 10.75 -1.05 2019-02-25 15:37:28 54 154s 55 11.25 -1.05 2019-02-25 15:37:28 55 154s 56 11.75 -1.05 2019-02-25 15:37:28 56 154s 57 10.25 -1.75 2019-02-25 15:37:28 57 154s 58 10.75 -1.75 2019-02-25 15:37:28 58 154s 59 11.25 -1.75 2019-02-25 15:37:28 59 154s 60 11.75 -1.75 2019-02-25 15:37:28 60 154s 61 10.25 -2.45 2019-02-25 15:37:28 61 154s 62 10.75 -2.45 2019-02-25 15:37:28 62 154s 63 11.25 -2.45 2019-02-25 15:37:28 63 154s 64 11.75 -2.45 2019-02-25 15:37:28 64 154s > plot(s, col = sf.colors(), axes = TRUE) 154s > (s.stfdf = as(s, "STFDF")) 154s An object of class "STFDF" 154s Slot "data": 154s foo 154s 1 1 154s 2 2 154s 3 3 154s 4 4 154s 5 5 154s 6 6 154s 7 7 154s 8 8 154s 9 9 154s 10 10 154s 11 11 154s 12 12 154s 13 13 154s 14 14 154s 15 15 154s 16 16 154s 17 17 154s 18 18 154s 19 19 154s 20 20 154s 21 21 154s 22 22 154s 23 23 154s 24 24 154s 25 25 154s 26 26 154s 27 27 154s 28 28 154s 29 29 154s 30 30 154s 31 31 154s 32 32 154s 33 33 154s 34 34 154s 35 35 154s 36 36 154s 37 37 154s 38 38 154s 39 39 154s 40 40 154s 41 41 154s 42 42 154s 43 43 154s 44 44 154s 45 45 154s 46 46 154s 47 47 154s 48 48 154s 49 49 154s 50 50 154s 51 51 154s 52 52 154s 53 53 154s 54 54 154s 55 55 154s 56 56 154s 57 57 154s 58 58 154s 59 59 154s 60 60 154s 61 61 154s 62 62 154s 63 63 154s 64 64 154s 154s Slot "sp": 154s Object of class SpatialPixels 154s Grid topology: 154s cellcentre.offset cellsize cells.dim 154s x 10.25 0.5 4 154s y -2.45 0.7 4 154s SpatialPoints: 154s x y 154s [1,] 10.25 -0.35 154s [2,] 10.75 -0.35 154s [3,] 11.25 -0.35 154s [4,] 11.75 -0.35 154s [5,] 10.25 -1.05 154s [6,] 10.75 -1.05 154s [7,] 11.25 -1.05 154s [8,] 11.75 -1.05 154s [9,] 10.25 -1.75 154s [10,] 10.75 -1.75 154s [11,] 11.25 -1.75 154s [12,] 11.75 -1.75 154s [13,] 10.25 -2.45 154s [14,] 10.75 -2.45 154s [15,] 11.25 -2.45 154s [16,] 11.75 -2.45 154s Coordinate Reference System (CRS) arguments: NA 154s 154s Slot "time": 154s timeIndex 154s 2019-02-25 15:37:25 1 154s 2019-02-25 15:37:26 2 154s 2019-02-25 15:37:27 3 154s 2019-02-25 15:37:28 4 154s 154s Slot "endTime": 154s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 154s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 154s 154s > stplot(s.stfdf, scales = list(draw = TRUE)) 154s > 154s > (s2 = st_as_stars(s.stfdf)) 154s stars object with 3 dimensions and 1 attribute 154s attribute(s): 154s Min. 1st Qu. Median Mean 3rd Qu. Max. 154s foo 1 16.75 32.5 32.5 48.25 64 154s dimension(s): 154s from to offset delta refsys x/y 154s x 1 4 10 0.5 NA [x] 154s y 1 4 -1.11e-16 -0.7 NA [y] 154s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 154s > plot(s2, col = sf.colors(), axes = TRUE) 154s > all.equal(s, s2, check.attributes = FALSE) 154s [1] TRUE 154s > 154s > # multiple simulations: 154s > data(meuse, package = "sp") 154s > data(meuse.grid, package = "sp") 154s > coordinates(meuse.grid) <- ~x+y 154s > gridded(meuse.grid) <- TRUE 154s > meuse.grid = st_as_stars(meuse.grid) 154s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 154s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 154s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 154s > set.seed(123) 154s > (p = predict(g, meuse.grid, nsim = 5)) 154s drawing 5 multivariate GLS realisations of beta... 154s [using conditional Gaussian simulation] 154s stars object with 3 dimensions and 2 attributes 154s attribute(s): 154s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 154s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 154s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 154s dimension(s): 154s from to offset delta values x/y 154s x 1 78 178440 40 NULL [x] 154s y 1 104 333760 -40 NULL [y] 154s sample 1 5 NA NA sim1,...,sim5 154s > 154s BEGIN TEST unproj.R 154s 154s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 154s Copyright (C) 2024 The R Foundation for Statistical Computing 154s Platform: aarch64-unknown-linux-gnu 154s 154s R is free software and comes with ABSOLUTELY NO WARRANTY. 154s You are welcome to redistribute it under certain conditions. 154s Type 'license()' or 'licence()' for distribution details. 154s 154s R is a collaborative project with many contributors. 154s Type 'contributors()' for more information and 154s 'citation()' on how to cite R or R packages in publications. 154s 154s Type 'demo()' for some demos, 'help()' for on-line help, or 154s 'help.start()' for an HTML browser interface to help. 154s Type 'q()' to quit R. 154s 154s > # DOI 10.1007/s11004-011-9344-7 154s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 154s > 154s > suppressPackageStartupMessages(library(sp)) 155s > library(gstat) 155s > 155s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 155s + data(meuse) 155s + coordinates(meuse) = ~x+y 155s + proj4string(meuse) = CRS("+init=epsg:28992") 155s + ll = "+proj=longlat +ellps=WGS84" 155s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 155s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 155s + meuse.ll[1:10,] 155s + variogram(log(zinc)~1, meuse.ll) 155s + 155s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 155s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 155s + 155s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 155s + abline(0,1) 155s + 155s + data(ozone2) 155s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 155s + data.frame(t(ozone2$y)), 155s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 155s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 155s + utm16 = "+proj=utm +zone=16" 155s + # oz.utm = spTransform(oz, utm16) 155s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 155s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 155s + 155s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 155s + 155s + foo <- 155s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 155s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 155s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 155s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 155s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 155s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 155s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 155s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 155s + -11L), class = "data.frame") 155s + 155s + coordinates(foo) <- ~lon+lat 155s + 155s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 155s + 155s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 155s + 155s + cat('==========\nvariogram:\n') 155s + print(head(vg.foo)) 155s + 155s + cat('==========\nspDistsN1 Distances:\n') 155s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 155s + } 155s Spam version 2.10-0 (2023-10-23) is loaded. 155s Type 'help( Spam)' or 'demo( spam)' for a short introduction 155s and overview of this package. 155s Help for individual functions is also obtained by adding the 155s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 155s 155s Attaching package: ‘spam’ 155s 155s The following objects are masked from ‘package:base’: 155s 155s backsolve, forwardsolve 155s 155s 155s Try help(fields) to get started. 156s Linking to GEOS 3.12.2, GDAL 3.9.1, PROJ 9.4.1; sf_use_s2() is TRUE 156s ========== 156s variogram: 156s dist gamma dir.hor dir.ver id left right 156s 1 3115.1190 8.971063e-04 0 0 var1 2 1 156s 2 1908.0468 1.909846e+01 0 0 var1 3 1 156s 3 1405.6211 1.883757e+01 0 0 var1 3 2 156s 4 1837.5667 1.347749e+01 0 0 var1 4 1 156s 5 1522.8765 1.325847e+01 0 0 var1 4 2 156s 6 119.9386 4.886139e-01 0 0 var1 4 3 156s ========== 156s spDistsN1 Distances: 156s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 156s [8] 3081.7541 4090.4022 665.9348 2683.1516 156s > 156s Warning message: 156s In CPL_crs_from_input(x) : 156s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 157s BEGIN TEST variogram.R 157s 157s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 157s Copyright (C) 2024 The R Foundation for Statistical Computing 157s Platform: aarch64-unknown-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > library(sp) 157s > library(gstat) 157s > data(meuse) 157s > variogram(log(zinc)~1, ~x+y, meuse) 158s np dist gamma dir.hor dir.ver id 158s 1 57 79.29244 0.1234479 0 0 var1 158s 2 299 163.97367 0.2162185 0 0 var1 158s 3 419 267.36483 0.3027859 0 0 var1 158s 4 457 372.73542 0.4121448 0 0 var1 158s 5 547 478.47670 0.4634128 0 0 var1 158s 6 533 585.34058 0.5646933 0 0 var1 158s 7 574 693.14526 0.5689683 0 0 var1 158s 8 564 796.18365 0.6186769 0 0 var1 158s 9 589 903.14650 0.6471479 0 0 var1 158s 10 543 1011.29177 0.6915705 0 0 var1 158s 11 500 1117.86235 0.7033984 0 0 var1 158s 12 477 1221.32810 0.6038770 0 0 var1 158s 13 452 1329.16407 0.6517158 0 0 var1 158s 14 457 1437.25620 0.5665318 0 0 var1 158s 15 415 1543.20248 0.5748227 0 0 var1 158s > 158s > coordinates(meuse) <- ~ x + y 158s > variogram(log(zinc)~1, meuse) 158s np dist gamma dir.hor dir.ver id 158s 1 57 79.29244 0.1234479 0 0 var1 158s 2 299 163.97367 0.2162185 0 0 var1 158s 3 419 267.36483 0.3027859 0 0 var1 158s 4 457 372.73542 0.4121448 0 0 var1 158s 5 547 478.47670 0.4634128 0 0 var1 158s 6 533 585.34058 0.5646933 0 0 var1 158s 7 574 693.14526 0.5689683 0 0 var1 158s 8 564 796.18365 0.6186769 0 0 var1 158s 9 589 903.14650 0.6471479 0 0 var1 158s 10 543 1011.29177 0.6915705 0 0 var1 158s 11 500 1117.86235 0.7033984 0 0 var1 158s 12 477 1221.32810 0.6038770 0 0 var1 158s 13 452 1329.16407 0.6517158 0 0 var1 158s 14 457 1437.25620 0.5665318 0 0 var1 158s 15 415 1543.20248 0.5748227 0 0 var1 158s > 158s > ind=seq(1,155,2) 158s > var1= meuse[ind,] 158s > var2= meuse[-ind,] 158s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 158s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 158s > v.cross <- variogram(g) 158s > plot(v.cross) 158s > 158s > 158s BEGIN TEST vdist.R 158s 158s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 158s Copyright (C) 2024 The R Foundation for Statistical Computing 158s Platform: aarch64-unknown-linux-gnu 158s 158s R is free software and comes with ABSOLUTELY NO WARRANTY. 158s You are welcome to redistribute it under certain conditions. 158s Type 'license()' or 'licence()' for distribution details. 158s 158s R is a collaborative project with many contributors. 158s Type 'contributors()' for more information and 158s 'citation()' on how to cite R or R packages in publications. 158s 158s Type 'demo()' for some demos, 'help()' for on-line help, or 158s 'help.start()' for an HTML browser interface to help. 158s Type 'q()' to quit R. 158s 158s > library(sp) 158s > library(gstat) 159s > 159s > data(meuse) 159s > coordinates(meuse) = ~x+y 159s > data(meuse.grid) 159s > gridded(meuse.grid) = ~x+y 159s > 159s > mg = meuse.grid 159s > gridded(mg) = FALSE 159s > mg= mg[1500,] 159s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 159s + vdist=FALSE, maxdist=1000,nmax=10) 159s [using ordinary kriging] 159s coordinates var1.pred var1.var 159s 1500 (180260, 331300) 5.007376 1.102622 159s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 159s + vdist=TRUE, maxdist=1000,nmax=10) 159s [using ordinary kriging] 159s coordinates var1.pred var1.var 159s 1500 (180260, 331300) 5.50671 1.100095 159s > 160s autopkgtest [23:49:58]: test run-unit-test: -----------------------] 160s autopkgtest [23:49:58]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 160s run-unit-test PASS 161s autopkgtest [23:49:59]: test pkg-r-autopkgtest: preparing testbed 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 163s The following additional packages will be installed: 163s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 163s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 163s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 163s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 163s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 163s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 163s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 163s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 163s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 163s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 163s r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 163s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 163s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 163s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 163s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr zlib1g-dev 163s Suggested packages: 163s cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib 163s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 163s gdb-aarch64-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev 163s liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-14-doc 163s texlive-base texlive-latex-base texlive-plain-generic 163s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 163s texlive-latex-recommended texlive-latex-extra texinfo r-cran-knitr 163s r-cran-rmarkdown r-cran-doparallel r-cran-foreach r-cran-parallelmap 163s r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi gridengine-client 163s slurm-client r-cran-lubridate r-cran-covr r-cran-testthat r-cran-roxygen2 163s Recommended packages: 163s bzip2-doc libpng-tools r-cran-testthat r-cran-base64enc r-cran-openssl 163s r-cran-ranger r-cran-fastmatch r-cran-devtools r-cran-ggplot2 r-cran-knitr 163s r-cran-rmarkdown r-cran-tinytest r-cran-tibble r-cran-callr r-cran-covr 163s r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps 163s r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bit64 r-cran-bit 163s r-cran-r.utils r-cran-yaml r-cran-markdown r-cran-pillar r-cran-spelling 163s r-cran-r.rsp r-cran-dplyr r-cran-rsqlite r-cran-waldo r-cran-lintr 163s r-cran-tidyverse r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot 163s The following NEW packages will be installed: 163s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu 163s cpp-aarch64-linux-gnu dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu 163s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 163s gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu 163s gfortran-aarch64-linux-gnu icu-devtools libasan8 libblas-dev libbz2-dev 163s libcc1-0 libdeflate-dev libgcc-14-dev libgfortran-14-dev libhwasan0 163s libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 163s liblapack-dev liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 163s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 163s libreadline-dev libstdc++-14-dev libtirpc-dev libtsan2 libubsan1 163s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 163s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate r-cran-cli 163s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 163s r-cran-glue r-cran-hms r-cran-lifecycle r-cran-pkgconfig r-cran-prettyunits 163s r-cran-progress r-cran-r6 r-cran-rappdirs r-cran-stringi r-cran-vctrs 163s r-cran-withr zlib1g-dev 163s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 163s Need to get 101 MB/101 MB of archives. 163s After this operation, 346 MB of additional disk space will be used. 163s Get:1 /tmp/autopkgtest.XT5ZVL/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B] 164s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 164s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [10.6 MB] 165s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-7ubuntu1 [1030 B] 165s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 165s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 165s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-7ubuntu1 [49.7 kB] 165s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-7ubuntu1 [27.8 kB] 165s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-7ubuntu1 [2893 kB] 165s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-7ubuntu1 [1283 kB] 165s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-7ubuntu1 [2691 kB] 165s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-7ubuntu1 [1151 kB] 165s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-7ubuntu1 [1599 kB] 165s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-7ubuntu1 [2594 kB] 165s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [20.9 MB] 166s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-7ubuntu1 [515 kB] 166s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 166s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 166s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-7ubuntu1 [2474 kB] 166s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [12.1 MB] 167s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-7ubuntu1 [19.8 kB] 167s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 167s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 167s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 167s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 167s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-7ubuntu1 [498 kB] 167s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [11.4 MB] 167s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-7ubuntu1 [11.6 kB] 167s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B] 167s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B] 167s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 74.2-1ubuntu4 [210 kB] 167s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-3build2 [120 kB] 167s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 167s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.21-1 [53.8 kB] 167s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 74.2-1ubuntu4 [11.9 MB] 168s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 168s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 168s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 168s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-3build2 [4419 kB] 168s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB] 168s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 168s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB] 168s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B] 168s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB] 168s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-3ubuntu1 [31.5 kB] 168s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 168s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-1 [268 kB] 168s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-5 [179 kB] 168s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB] 168s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-3ubuntu1 [20.9 kB] 168s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-3ubuntu1 [16.8 kB] 168s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 168s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.1-1 [4338 B] 168s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 168s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 168s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64url arm64 1.4-2build1 [26.4 kB] 168s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 168s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 168s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-data.table arm64 1.15.4+dfsg-2.2 [1858 kB] 168s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.4+dfsg-1 [244 kB] 168s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 168s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 168s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 168s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 168s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 168s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 168s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 168s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 168s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 168s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 168s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 168s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 168s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 168s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-batchtools arm64 0.9.17+dfsg-1 [712 kB] 168s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 169s Fetched 101 MB in 5s (20.9 MB/s) 169s Selecting previously unselected package libisl23:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86255 files and directories currently installed.) 169s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 169s Unpacking libisl23:arm64 (0.27-1) ... 169s Selecting previously unselected package libmpc3:arm64. 169s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 169s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 169s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 169s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 169s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 169s Selecting previously unselected package cpp-14. 169s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_arm64.deb ... 169s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 169s Selecting previously unselected package cpp-aarch64-linux-gnu. 169s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 169s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 169s Selecting previously unselected package cpp. 169s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 169s Unpacking cpp (4:14.1.0-2ubuntu1) ... 169s Selecting previously unselected package libcc1-0:arm64. 169s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_arm64.deb ... 169s Unpacking libcc1-0:arm64 (14.2.0-7ubuntu1) ... 169s Selecting previously unselected package libitm1:arm64. 169s Preparing to unpack .../07-libitm1_14.2.0-7ubuntu1_arm64.deb ... 169s Unpacking libitm1:arm64 (14.2.0-7ubuntu1) ... 169s Selecting previously unselected package libasan8:arm64. 169s Preparing to unpack .../08-libasan8_14.2.0-7ubuntu1_arm64.deb ... 169s Unpacking libasan8:arm64 (14.2.0-7ubuntu1) ... 169s Selecting previously unselected package liblsan0:arm64. 169s Preparing to unpack .../09-liblsan0_14.2.0-7ubuntu1_arm64.deb ... 169s Unpacking liblsan0:arm64 (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package libtsan2:arm64. 170s Preparing to unpack .../10-libtsan2_14.2.0-7ubuntu1_arm64.deb ... 170s Unpacking libtsan2:arm64 (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package libubsan1:arm64. 170s Preparing to unpack .../11-libubsan1_14.2.0-7ubuntu1_arm64.deb ... 170s Unpacking libubsan1:arm64 (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package libhwasan0:arm64. 170s Preparing to unpack .../12-libhwasan0_14.2.0-7ubuntu1_arm64.deb ... 170s Unpacking libhwasan0:arm64 (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package libgcc-14-dev:arm64. 170s Preparing to unpack .../13-libgcc-14-dev_14.2.0-7ubuntu1_arm64.deb ... 170s Unpacking libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 170s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 170s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package gcc-14. 170s Preparing to unpack .../15-gcc-14_14.2.0-7ubuntu1_arm64.deb ... 170s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 170s Selecting previously unselected package gcc-aarch64-linux-gnu. 170s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 170s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 170s Selecting previously unselected package gcc. 171s Preparing to unpack .../17-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 171s Unpacking gcc (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package libstdc++-14-dev:arm64. 171s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-7ubuntu1_arm64.deb ... 171s Unpacking libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package g++-14-aarch64-linux-gnu. 171s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 171s Unpacking g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package g++-14. 171s Preparing to unpack .../20-g++-14_14.2.0-7ubuntu1_arm64.deb ... 171s Unpacking g++-14 (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package g++-aarch64-linux-gnu. 171s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 171s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package g++. 171s Preparing to unpack .../22-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 171s Unpacking g++ (4:14.1.0-2ubuntu1) ... 171s Selecting previously unselected package build-essential. 171s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 171s Unpacking build-essential (12.10ubuntu1) ... 171s Selecting previously unselected package dctrl-tools. 171s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 171s Unpacking dctrl-tools (2.24-3build3) ... 171s Selecting previously unselected package libgfortran-14-dev:arm64. 171s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-7ubuntu1_arm64.deb ... 171s Unpacking libgfortran-14-dev:arm64 (14.2.0-7ubuntu1) ... 171s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 171s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 171s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package gfortran-14. 172s Preparing to unpack .../27-gfortran-14_14.2.0-7ubuntu1_arm64.deb ... 172s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 172s Selecting previously unselected package gfortran-aarch64-linux-gnu. 172s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 172s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package gfortran. 172s Preparing to unpack .../29-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ... 172s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 172s Selecting previously unselected package icu-devtools. 172s Preparing to unpack .../30-icu-devtools_74.2-1ubuntu4_arm64.deb ... 172s Unpacking icu-devtools (74.2-1ubuntu4) ... 172s Selecting previously unselected package libblas-dev:arm64. 172s Preparing to unpack .../31-libblas-dev_3.12.0-3build2_arm64.deb ... 172s Unpacking libblas-dev:arm64 (3.12.0-3build2) ... 172s Selecting previously unselected package libbz2-dev:arm64. 172s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 172s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 172s Selecting previously unselected package libdeflate-dev:arm64. 172s Preparing to unpack .../33-libdeflate-dev_1.21-1_arm64.deb ... 172s Unpacking libdeflate-dev:arm64 (1.21-1) ... 172s Selecting previously unselected package libicu-dev:arm64. 172s Preparing to unpack .../34-libicu-dev_74.2-1ubuntu4_arm64.deb ... 172s Unpacking libicu-dev:arm64 (74.2-1ubuntu4) ... 172s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 172s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 172s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 172s Selecting previously unselected package libjpeg8-dev:arm64. 172s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 172s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 172s Selecting previously unselected package libjpeg-dev:arm64. 172s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 172s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 172s Selecting previously unselected package liblapack-dev:arm64. 172s Preparing to unpack .../38-liblapack-dev_3.12.0-3build2_arm64.deb ... 172s Unpacking liblapack-dev:arm64 (3.12.0-3build2) ... 173s Selecting previously unselected package libncurses-dev:arm64. 173s Preparing to unpack .../39-libncurses-dev_6.5-2_arm64.deb ... 173s Unpacking libncurses-dev:arm64 (6.5-2) ... 173s Selecting previously unselected package libpcre2-16-0:arm64. 173s Preparing to unpack .../40-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ... 173s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpcre2-32-0:arm64. 173s Preparing to unpack .../41-libpcre2-32-0_10.42-4ubuntu3_arm64.deb ... 173s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpcre2-posix3:arm64. 173s Preparing to unpack .../42-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ... 173s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpcre2-dev:arm64. 173s Preparing to unpack .../43-libpcre2-dev_10.42-4ubuntu3_arm64.deb ... 173s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ... 173s Selecting previously unselected package libpkgconf3:arm64. 173s Preparing to unpack .../44-libpkgconf3_1.8.1-3ubuntu1_arm64.deb ... 173s Unpacking libpkgconf3:arm64 (1.8.1-3ubuntu1) ... 173s Selecting previously unselected package zlib1g-dev:arm64. 173s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 173s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 173s Selecting previously unselected package libpng-dev:arm64. 173s Preparing to unpack .../46-libpng-dev_1.6.44-1_arm64.deb ... 173s Unpacking libpng-dev:arm64 (1.6.44-1) ... 173s Selecting previously unselected package libreadline-dev:arm64. 173s Preparing to unpack .../47-libreadline-dev_8.2-5_arm64.deb ... 173s Unpacking libreadline-dev:arm64 (8.2-5) ... 173s Selecting previously unselected package liblzma-dev:arm64. 173s Preparing to unpack .../48-liblzma-dev_5.6.2-2_arm64.deb ... 173s Unpacking liblzma-dev:arm64 (5.6.2-2) ... 173s Selecting previously unselected package pkgconf-bin. 173s Preparing to unpack .../49-pkgconf-bin_1.8.1-3ubuntu1_arm64.deb ... 173s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 173s Selecting previously unselected package pkgconf:arm64. 173s Preparing to unpack .../50-pkgconf_1.8.1-3ubuntu1_arm64.deb ... 173s Unpacking pkgconf:arm64 (1.8.1-3ubuntu1) ... 173s Selecting previously unselected package libtirpc-dev:arm64. 173s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 173s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 173s Selecting previously unselected package r-base-dev. 173s Preparing to unpack .../52-r-base-dev_4.4.1-1_all.deb ... 173s Unpacking r-base-dev (4.4.1-1) ... 173s Selecting previously unselected package pkg-r-autopkgtest. 173s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 173s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 173s Selecting previously unselected package r-cran-backports. 173s Preparing to unpack .../54-r-cran-backports_1.5.0-2_arm64.deb ... 173s Unpacking r-cran-backports (1.5.0-2) ... 173s Selecting previously unselected package r-cran-base64url. 173s Preparing to unpack .../55-r-cran-base64url_1.4-2build1_arm64.deb ... 173s Unpacking r-cran-base64url (1.4-2build1) ... 173s Selecting previously unselected package r-cran-brew. 173s Preparing to unpack .../56-r-cran-brew_1.0-10-1_all.deb ... 173s Unpacking r-cran-brew (1.0-10-1) ... 173s Selecting previously unselected package r-cran-checkmate. 173s Preparing to unpack .../57-r-cran-checkmate_2.3.1-1_arm64.deb ... 173s Unpacking r-cran-checkmate (2.3.1-1) ... 173s Selecting previously unselected package r-cran-data.table. 173s Preparing to unpack .../58-r-cran-data.table_1.15.4+dfsg-2.2_arm64.deb ... 173s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 173s Selecting previously unselected package r-cran-fs. 173s Preparing to unpack .../59-r-cran-fs_1.6.4+dfsg-1_arm64.deb ... 173s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 173s Selecting previously unselected package r-cran-crayon. 173s Preparing to unpack .../60-r-cran-crayon_1.5.2-1_all.deb ... 173s Unpacking r-cran-crayon (1.5.2-1) ... 174s Selecting previously unselected package r-cran-cli. 174s Preparing to unpack .../61-r-cran-cli_3.6.2-1_arm64.deb ... 174s Unpacking r-cran-cli (3.6.2-1) ... 174s Selecting previously unselected package r-cran-glue. 174s Preparing to unpack .../62-r-cran-glue_1.7.0-1_arm64.deb ... 174s Unpacking r-cran-glue (1.7.0-1) ... 174s Selecting previously unselected package r-cran-lifecycle. 174s Preparing to unpack .../63-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 174s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 174s Selecting previously unselected package r-cran-pkgconfig. 174s Preparing to unpack .../64-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 174s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 174s Selecting previously unselected package r-cran-vctrs. 174s Preparing to unpack .../65-r-cran-vctrs_0.6.5-1_arm64.deb ... 174s Unpacking r-cran-vctrs (0.6.5-1) ... 174s Selecting previously unselected package r-cran-hms. 174s Preparing to unpack .../66-r-cran-hms_1.1.3-1_all.deb ... 174s Unpacking r-cran-hms (1.1.3-1) ... 174s Selecting previously unselected package r-cran-prettyunits. 174s Preparing to unpack .../67-r-cran-prettyunits_1.2.0-1_all.deb ... 174s Unpacking r-cran-prettyunits (1.2.0-1) ... 174s Selecting previously unselected package r-cran-r6. 174s Preparing to unpack .../68-r-cran-r6_2.5.1-1_all.deb ... 174s Unpacking r-cran-r6 (2.5.1-1) ... 174s Selecting previously unselected package r-cran-progress. 174s Preparing to unpack .../69-r-cran-progress_1.2.3-1_all.deb ... 174s Unpacking r-cran-progress (1.2.3-1) ... 174s Selecting previously unselected package r-cran-rappdirs. 174s Preparing to unpack .../70-r-cran-rappdirs_0.3.3-1_arm64.deb ... 174s Unpacking r-cran-rappdirs (0.3.3-1) ... 174s Selecting previously unselected package r-cran-stringi. 174s Preparing to unpack .../71-r-cran-stringi_1.8.3-1_arm64.deb ... 174s Unpacking r-cran-stringi (1.8.3-1) ... 174s Selecting previously unselected package r-cran-withr. 174s Preparing to unpack .../72-r-cran-withr_3.0.0+dfsg-1_all.deb ... 174s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 174s Selecting previously unselected package r-cran-batchtools. 174s Preparing to unpack .../73-r-cran-batchtools_0.9.17+dfsg-1_arm64.deb ... 174s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 174s Selecting previously unselected package r-cran-future.batchtools. 174s Preparing to unpack .../74-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 174s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 174s Selecting previously unselected package autopkgtest-satdep. 174s Preparing to unpack .../75-2-autopkgtest-satdep.deb ... 174s Unpacking autopkgtest-satdep (0) ... 174s Setting up r-cran-fs (1.6.4+dfsg-1) ... 174s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 174s Setting up libncurses-dev:arm64 (6.5-2) ... 174s Setting up r-cran-withr (3.0.0+dfsg-1) ... 174s Setting up r-cran-backports (1.5.0-2) ... 174s Setting up r-cran-prettyunits (1.2.0-1) ... 174s Setting up r-cran-checkmate (2.3.1-1) ... 174s Setting up libreadline-dev:arm64 (8.2-5) ... 174s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 174s Setting up r-cran-glue (1.7.0-1) ... 174s Setting up r-cran-cli (3.6.2-1) ... 174s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 174s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 174s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 174s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 174s Setting up r-cran-brew (1.0-10-1) ... 174s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 174s Setting up libpkgconf3:arm64 (1.8.1-3ubuntu1) ... 174s Setting up r-cran-stringi (1.8.3-1) ... 174s Setting up r-cran-crayon (1.5.2-1) ... 174s Setting up libmpc3:arm64 (1.3.1-1build2) ... 174s Setting up icu-devtools (74.2-1ubuntu4) ... 174s Setting up pkgconf-bin (1.8.1-3ubuntu1) ... 174s Setting up liblzma-dev:arm64 (5.6.2-2) ... 174s Setting up libubsan1:arm64 (14.2.0-7ubuntu1) ... 174s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 174s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 174s Setting up libhwasan0:arm64 (14.2.0-7ubuntu1) ... 174s Setting up libasan8:arm64 (14.2.0-7ubuntu1) ... 174s Setting up libtsan2:arm64 (14.2.0-7ubuntu1) ... 174s Setting up r-cran-r6 (2.5.1-1) ... 174s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 174s Setting up libisl23:arm64 (0.27-1) ... 174s Setting up libdeflate-dev:arm64 (1.21-1) ... 174s Setting up libicu-dev:arm64 (74.2-1ubuntu4) ... 174s Setting up libcc1-0:arm64 (14.2.0-7ubuntu1) ... 174s Setting up r-cran-vctrs (0.6.5-1) ... 174s Setting up r-cran-rappdirs (0.3.3-1) ... 174s Setting up liblsan0:arm64 (14.2.0-7ubuntu1) ... 174s Setting up libblas-dev:arm64 (3.12.0-3build2) ... 174s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 174s Setting up dctrl-tools (2.24-3build3) ... 174s Setting up libitm1:arm64 (14.2.0-7ubuntu1) ... 174s Setting up libbz2-dev:arm64 (1.0.8-6) ... 174s Setting up r-cran-base64url (1.4-2build1) ... 174s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ... 174s Setting up libpng-dev:arm64 (1.6.44-1) ... 174s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 174s Setting up pkgconf:arm64 (1.8.1-3ubuntu1) ... 174s Setting up r-cran-hms (1.1.3-1) ... 174s Setting up liblapack-dev:arm64 (3.12.0-3build2) ... 174s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 174s Setting up cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 174s Setting up libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 174s Setting up r-cran-progress (1.2.3-1) ... 174s Setting up libgfortran-14-dev:arm64 (14.2.0-7ubuntu1) ... 174s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up cpp-14 (14.2.0-7ubuntu1) ... 174s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 174s Setting up cpp (4:14.1.0-2ubuntu1) ... 174s Setting up gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up gcc-14 (14.2.0-7ubuntu1) ... 174s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 174s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 174s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Setting up g++-14 (14.2.0-7ubuntu1) ... 174s Setting up gfortran-14 (14.2.0-7ubuntu1) ... 174s Setting up gcc (4:14.1.0-2ubuntu1) ... 174s Setting up g++ (4:14.1.0-2ubuntu1) ... 174s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 174s Setting up build-essential (12.10ubuntu1) ... 174s Setting up gfortran (4:14.1.0-2ubuntu1) ... 174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 174s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 174s Setting up r-base-dev (4.4.1-1) ... 174s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 174s Setting up autopkgtest-satdep (0) ... 174s Processing triggers for man-db (2.12.1-3) ... 175s Processing triggers for install-info (7.1.1-1) ... 175s Processing triggers for libc-bin (2.40-1ubuntu3) ... 179s (Reading database ... 89972 files and directories currently installed.) 179s Removing autopkgtest-satdep (0) ... 179s autopkgtest [23:50:17]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 179s autopkgtest [23:50:17]: test pkg-r-autopkgtest: [----------------------- 180s Test: Try to load the R library gstat 180s 180s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 180s Copyright (C) 2024 The R Foundation for Statistical Computing 180s Platform: aarch64-unknown-linux-gnu 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > library('gstat') 180s > 180s > 180s Other tests are currently unsupported! 180s They will be progressively added. 181s autopkgtest [23:50:19]: test pkg-r-autopkgtest: -----------------------] 181s autopkgtest [23:50:19]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 181s pkg-r-autopkgtest PASS 182s autopkgtest [23:50:20]: @@@@@@@@@@@@@@@@@@@@ summary 182s run-unit-test PASS 182s pkg-r-autopkgtest PASS 196s nova [W] Skipping flock in bos03-arm64 196s Creating nova instance adt-plucky-arm64-r-cran-gstat-20241101-234718-juju-7f2275-prod-proposed-migration-environment-2-b5946998-67ed-4f99-b8c2-58bd7ef5fb1e from image adt/ubuntu-plucky-arm64-server-20241101.img (UUID 520a937f-514a-4e80-b76b-163a8c247e3e)...