0s autopkgtest [18:42:05]: starting date and time: 2024-11-01 18:42:05+0000 0s autopkgtest [18:42:05]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:42:05]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rwtu5w7q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-spacetime --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-spacetime/1.3-2-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-29.secgroup --name adt-plucky-arm64-r-cran-gstat-20241101-184204-juju-7f2275-prod-proposed-migration-environment-2-03453600-35b6-496c-9f57-fe3e31e45e04 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 64s autopkgtest [18:43:09]: testbed dpkg architecture: arm64 64s autopkgtest [18:43:09]: testbed apt version: 2.9.8 64s autopkgtest [18:43:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 66s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [44.0 kB] 66s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [183 kB] 66s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 66s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2775 kB] 66s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [241 kB] 66s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 66s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [2023 kB] 66s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [36.5 kB] 67s Fetched 5433 kB in 1s (4046 kB/s) 67s Reading package lists... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s Calculating upgrade... 72s The following packages will be upgraded: 72s libevdev2 libftdi1-2 libinih1 nano python3-lazr.uri 72s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 374 kB of archives. 72s After this operation, 17.4 kB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libevdev2 arm64 1.13.3+dfsg-1 [36.0 kB] 72s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 nano arm64 8.2-1 [289 kB] 73s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libftdi1-2 arm64 1.5-7 [28.4 kB] 73s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libinih1 arm64 58-1ubuntu1 [7412 B] 73s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lazr.uri all 1.0.6-4 [13.6 kB] 73s Fetched 374 kB in 0s (844 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 73s Preparing to unpack .../libevdev2_1.13.3+dfsg-1_arm64.deb ... 73s Unpacking libevdev2:arm64 (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 73s Preparing to unpack .../archives/nano_8.2-1_arm64.deb ... 73s Unpacking nano (8.2-1) over (8.1-1) ... 74s Preparing to unpack .../libftdi1-2_1.5-7_arm64.deb ... 74s Unpacking libftdi1-2:arm64 (1.5-7) over (1.5-6build5) ... 74s Preparing to unpack .../libinih1_58-1ubuntu1_arm64.deb ... 74s Unpacking libinih1:arm64 (58-1ubuntu1) over (55-1ubuntu2) ... 74s Preparing to unpack .../python3-lazr.uri_1.0.6-4_all.deb ... 74s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 74s Setting up libinih1:arm64 (58-1ubuntu1) ... 74s Setting up python3-lazr.uri (1.0.6-4) ... 74s Setting up libftdi1-2:arm64 (1.5-7) ... 74s Setting up nano (8.2-1) ... 74s Setting up libevdev2:arm64 (1.13.3+dfsg-1) ... 74s Processing triggers for man-db (2.12.1-3) ... 75s Processing triggers for install-info (7.1.1-1) ... 75s Processing triggers for libc-bin (2.40-1ubuntu3) ... 75s Reading package lists... 76s Building dependency tree... 76s Reading state information... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 77s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 77s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 79s Reading package lists... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 80s Calculating upgrade... 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [18:43:30]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 86s autopkgtest [18:43:31]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 88s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 89s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 89s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 89s gpgv: issuer "tille@debian.org" 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 89s autopkgtest [18:43:34]: testing package r-cran-gstat version 2.1-1-2 90s autopkgtest [18:43:35]: build not needed 92s autopkgtest [18:43:37]: test run-unit-test: preparing testbed 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s The following additional packages will be installed: 95s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 95s gdal-plugins libaec0 libaom3 libarmadillo14 libarpack2t64 libblas3 libblosc1 95s libcairo2 libcfitsio10t64 libdatrie1 libde265-0 libdeflate0 libfontconfig1 95s libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.12.2 libgeotiff5 95s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 95s libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec 95s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 95s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 95s libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 95s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 95s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler140 95s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 95s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 95s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 95s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 95s libxt6t64 littler mysql-common proj-data r-base-core r-cran-abind 95s r-cran-class r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest 95s r-cran-dotcall64 r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future 95s r-cran-future.apply r-cran-globals r-cran-gstat r-cran-intervals 95s r-cran-kernsmooth r-cran-lattice r-cran-listenv r-cran-littler 95s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-parallelly 95s r-cran-pkgkitten r-cran-proxy r-cran-raster r-cran-rcpp r-cran-rlang 95s r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam 95s r-cran-stars r-cran-terra r-cran-units r-cran-viridislite r-cran-wk 95s r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 95s Suggested packages: 95s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 95s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 95s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 95s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 95s liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 95s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rmysql 95s r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr r-cran-rmarkdown 95s r-cran-mapproj r-cran-inline 95s Recommended packages: 95s proj-bin libheif-plugin-aomenc poppler-data r-recommended r-base-dev 95s r-doc-html r-cran-spdata r-cran-knitr r-cran-rmarkdown r-cran-tinytest 95s r-cran-rhpcblasctl r-cran-rcolorbrewer r-cran-roxygen2 r-cran-testthat 95s r-cran-r.rsp r-cran-markdown r-cran-r.utils r-cran-crayon r-cran-cba 95s r-cran-ncdf4 r-cran-igraph r-cran-exactextractr r-cran-cli r-cran-covr 95s r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble r-cran-usethis 95s r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob r-cran-nanoarrow 95s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix r-cran-pbapply 95s r-cran-rpostgresql r-cran-rsqlite r-cran-spatstat r-cran-spatstat.geom 95s r-cran-spatstat.random r-cran-spatstat.linnet r-cran-spatstat.utils 95s r-cran-tidyr r-cran-tidyselect r-cran-ncmeta r-cran-deldir r-cran-foreign 95s r-cran-plm r-cran-isocodes r-cran-truncdist r-cran-cairo r-cran-pcict 95s r-cran-rnetcdf r-cran-clue r-cran-cubelyr r-cran-ggforce r-cran-ggthemes 95s r-cran-httr r-cran-jsonlite r-cran-ncdfgeom r-cran-randomforest 95s r-cran-viridis r-cran-xml r-cran-htmlwidgets r-cran-xml2 r-cran-vdiffr 95s r-cran-readr r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 95s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 95s x11-xserver-utils 95s The following NEW packages will be installed: 95s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 95s fonts-dejavu-mono gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 95s libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 95s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgdal35 95s libgeos-c1t64 libgeos3.12.2 libgeotiff5 libgfortran5 libgif7 libgomp1 95s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 95s libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 95s libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 libkmldom1t64 95s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1t64 95s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 95s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 95s libpaper-utils libpaper1 libpixman-1-0 libpoppler140 libpq5 libproj25 95s libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 95s libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 95s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 95s libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler 95s mysql-common proj-data r-base-core r-cran-abind r-cran-class r-cran-classint 95s r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 95s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-globals 95s r-cran-gstat r-cran-intervals r-cran-kernsmooth r-cran-lattice 95s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 95s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-raster 95s r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp 95s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-units 95s r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip 95s x11-common xdg-utils zip 95s 0 upgraded, 138 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 141 MB/141 MB of archives. 95s After this operation, 303 MB of additional disk space will be used. 95s Get:1 /tmp/autopkgtest.AoI4PP/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B] 95s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-data all 3.9.1+dfsg-1build2 [269 kB] 96s Get:8 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-plugins arm64 3.9.1+dfsg-1build2 [25.3 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 96s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.9.1-1 [1651 kB] 97s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-7ubuntu1 [438 kB] 97s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 97s Get:14 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-1.1ubuntu1 [94.3 kB] 97s Get:15 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsuperlu6 arm64 6.0.1+dfsg1-1build3 [170 kB] 97s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarmadillo14 arm64 1:14.0.1+dfsg-2 [105 kB] 97s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 97s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 97s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 97s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 97s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 97s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 97s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 98s Get:24 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcfitsio10t64 arm64 4.4.1-2 [511 kB] 98s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 98s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB] 98s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.21-1 [46.2 kB] 98s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB] 98s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [23.1 kB] 98s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB] 98s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos3.12.2 arm64 3.12.2-1 [831 kB] 98s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos-c1t64 arm64 3.12.2-1 [88.5 kB] 98s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.4.1-1 [7892 kB] 99s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 99s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 99s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 99s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 99s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 99s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 99s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 99s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.4.1-1 [1294 kB] 99s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeotiff5 arm64 1.7.3-1 [60.8 kB] 99s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB] 99s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 99s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB] 99s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 99s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.18.1-2 [10.9 kB] 99s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.18.1-2 [8612 B] 99s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.18.1-2 [274 kB] 99s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 liburiparser1 arm64 0.9.8+dfsg-1 [35.4 kB] 99s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB] 99s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB] 99s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB] 99s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 mysql-common all 5.8+1.1.1 [6800 B] 99s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libmysqlclient21 arm64 8.0.39-1 [1239 kB] 99s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 99s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu1 [466 kB] 99s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.4.7-7build1 [40.4 kB] 99s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbc2 arm64 2.3.12-1ubuntu1 [145 kB] 99s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 99s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbcinst2 arm64 2.3.12-1ubuntu1 [29.8 kB] 99s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libogdi4.1 arm64 4.1.1+ds-4 [211 kB] 99s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu1 [182 kB] 99s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.14-2build1 [161 kB] 99s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libpoppler140 arm64 24.08.0-1 [1111 kB] 99s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.0-1 [248 kB] 99s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 99s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB] 99s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB] 99s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3 [874 kB] 100s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgdal35 arm64 3.9.1+dfsg-1build2 [8650 kB] 100s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-7ubuntu1 [145 kB] 100s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 100s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 9.0.0-1 [486 kB] 100s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 100s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 100s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 100s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 100s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.54.0+ds-2 [233 kB] 100s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-2 [48.8 kB] 100s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-2 [27.5 kB] 100s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 100s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 100s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 100s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 100s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 100s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 100s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 100s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 100s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB] 100s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 100s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14 [172 kB] 100s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 100s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 100s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB] 101s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 101s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-1 [2486 B] 101s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 101s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-61-1 [1107 kB] 101s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-class arm64 7.3-22-2build1 [88.3 kB] 101s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB] 101s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-e1071 arm64 1.7-14-1 [556 kB] 101s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-24-1 [92.6 kB] 101s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-classint arm64 0.4-10+dfsg-1 [106 kB] 101s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 101s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 102s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.36-1 [197 kB] 102s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dotcall64 arm64 1.1-1-1 [38.5 kB] 102s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 102s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.13-1 [1981 kB] 102s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spam arm64 2.10-0-1 [2759 kB] 102s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 102s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB] 102s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fields arm64 16.2-1 [4391 kB] 102s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 102s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-globals all 0.16.3-1 [120 kB] 102s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 102s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-parallelly arm64 1.37.1-1build1 [365 kB] 102s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 102s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 102s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 102s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.1-2+dfsg-1 [1448 kB] 102s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-zoo arm64 1.8-12-2 [984 kB] 102s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 102s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-wk arm64 0.9.1-1 [1785 kB] 102s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-s2 arm64 1.1.6-1build2 [1947 kB] 102s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB] 102s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sf arm64 1.0-16+dfsg-1build1 [3023 kB] 102s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sftime all 0.2-0-6 [168 kB] 102s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xts arm64 0.13.2-1 [770 kB] 102s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-intervals arm64 0.15.4-1 [755 kB] 102s Get:132 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-spacetime all 1.3-2-1 [2776 kB] 102s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB] 102s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stars all 0.6-6-1 [4105 kB] 103s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gstat arm64 2.1-1-2 [2338 kB] 103s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mapdata arm64 2.3.1-1 [23.5 MB] 103s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-terra arm64 1.7-78-1 [3661 kB] 103s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-raster arm64 3.6-26-1 [3100 kB] 104s Preconfiguring packages ... 104s Fetched 141 MB in 8s (17.5 MB/s) 104s Selecting previously unselected package fonts-dejavu-mono. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 104s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-mono (2.37-8) ... 104s Selecting previously unselected package fonts-dejavu-core. 104s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 104s Unpacking fonts-dejavu-core (2.37-8) ... 104s Selecting previously unselected package fontconfig-config. 104s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 104s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 104s Selecting previously unselected package libfontconfig1:arm64. 104s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 104s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 104s Selecting previously unselected package fontconfig. 104s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 104s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 105s Selecting previously unselected package gdal-data. 105s Preparing to unpack .../005-gdal-data_3.9.1+dfsg-1build2_all.deb ... 105s Unpacking gdal-data (3.9.1+dfsg-1build2) ... 105s Selecting previously unselected package gdal-plugins:arm64. 105s Preparing to unpack .../006-gdal-plugins_3.9.1+dfsg-1build2_arm64.deb ... 105s Unpacking gdal-plugins:arm64 (3.9.1+dfsg-1build2) ... 105s Selecting previously unselected package libaec0:arm64. 105s Preparing to unpack .../007-libaec0_1.1.3-1_arm64.deb ... 105s Unpacking libaec0:arm64 (1.1.3-1) ... 105s Selecting previously unselected package libaom3:arm64. 105s Preparing to unpack .../008-libaom3_3.9.1-1_arm64.deb ... 105s Unpacking libaom3:arm64 (3.9.1-1) ... 105s Selecting previously unselected package libblas3:arm64. 105s Preparing to unpack .../009-libblas3_3.12.0-3build2_arm64.deb ... 105s Unpacking libblas3:arm64 (3.12.0-3build2) ... 105s Selecting previously unselected package libgfortran5:arm64. 105s Preparing to unpack .../010-libgfortran5_14.2.0-7ubuntu1_arm64.deb ... 105s Unpacking libgfortran5:arm64 (14.2.0-7ubuntu1) ... 105s Selecting previously unselected package liblapack3:arm64. 105s Preparing to unpack .../011-liblapack3_3.12.0-3build2_arm64.deb ... 105s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 105s Selecting previously unselected package libarpack2t64:arm64. 105s Preparing to unpack .../012-libarpack2t64_3.9.1-1.1ubuntu1_arm64.deb ... 105s Unpacking libarpack2t64:arm64 (3.9.1-1.1ubuntu1) ... 105s Selecting previously unselected package libsuperlu6:arm64. 105s Preparing to unpack .../013-libsuperlu6_6.0.1+dfsg1-1build3_arm64.deb ... 105s Unpacking libsuperlu6:arm64 (6.0.1+dfsg1-1build3) ... 105s Selecting previously unselected package libarmadillo14. 105s Preparing to unpack .../014-libarmadillo14_1%3a14.0.1+dfsg-2_arm64.deb ... 105s Unpacking libarmadillo14 (1:14.0.1+dfsg-2) ... 105s Selecting previously unselected package libsnappy1v5:arm64. 105s Preparing to unpack .../015-libsnappy1v5_1.2.1-1_arm64.deb ... 105s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 105s Selecting previously unselected package libblosc1:arm64. 105s Preparing to unpack .../016-libblosc1_1.21.5+ds-1build1_arm64.deb ... 105s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 105s Selecting previously unselected package libpixman-1-0:arm64. 105s Preparing to unpack .../017-libpixman-1-0_0.42.2-1build1_arm64.deb ... 105s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 105s Selecting previously unselected package libxcb-render0:arm64. 105s Preparing to unpack .../018-libxcb-render0_1.17.0-2_arm64.deb ... 105s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 105s Selecting previously unselected package libxcb-shm0:arm64. 105s Preparing to unpack .../019-libxcb-shm0_1.17.0-2_arm64.deb ... 105s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 105s Selecting previously unselected package libxrender1:arm64. 105s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 105s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 105s Selecting previously unselected package libcairo2:arm64. 105s Preparing to unpack .../021-libcairo2_1.18.2-2_arm64.deb ... 105s Unpacking libcairo2:arm64 (1.18.2-2) ... 105s Selecting previously unselected package libcfitsio10t64:arm64. 105s Preparing to unpack .../022-libcfitsio10t64_4.4.1-2_arm64.deb ... 105s Unpacking libcfitsio10t64:arm64 (4.4.1-2) ... 105s Selecting previously unselected package libdatrie1:arm64. 105s Preparing to unpack .../023-libdatrie1_0.2.13-3build1_arm64.deb ... 105s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 105s Selecting previously unselected package libde265-0:arm64. 105s Preparing to unpack .../024-libde265-0_1.0.15-1build4_arm64.deb ... 105s Unpacking libde265-0:arm64 (1.0.15-1build4) ... 105s Selecting previously unselected package libdeflate0:arm64. 106s Preparing to unpack .../025-libdeflate0_1.21-1_arm64.deb ... 106s Unpacking libdeflate0:arm64 (1.21-1) ... 106s Selecting previously unselected package libfyba0t64:arm64. 106s Preparing to unpack .../026-libfyba0t64_4.1.1-11build1_arm64.deb ... 106s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ... 106s Selecting previously unselected package libminizip1t64:arm64. 106s Preparing to unpack .../027-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 106s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 106s Selecting previously unselected package libfreexl1:arm64. 106s Preparing to unpack .../028-libfreexl1_2.0.0-1build2_arm64.deb ... 106s Unpacking libfreexl1:arm64 (2.0.0-1build2) ... 106s Selecting previously unselected package libgeos3.12.2:arm64. 106s Preparing to unpack .../029-libgeos3.12.2_3.12.2-1_arm64.deb ... 106s Unpacking libgeos3.12.2:arm64 (3.12.2-1) ... 106s Selecting previously unselected package libgeos-c1t64:arm64. 106s Preparing to unpack .../030-libgeos-c1t64_3.12.2-1_arm64.deb ... 106s Unpacking libgeos-c1t64:arm64 (3.12.2-1) ... 106s Selecting previously unselected package proj-data. 106s Preparing to unpack .../031-proj-data_9.4.1-1_all.deb ... 106s Unpacking proj-data (9.4.1-1) ... 106s Selecting previously unselected package libjbig0:arm64. 106s Preparing to unpack .../032-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 106s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 106s Selecting previously unselected package libjpeg-turbo8:arm64. 106s Preparing to unpack .../033-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 106s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 106s Selecting previously unselected package libjpeg8:arm64. 106s Preparing to unpack .../034-libjpeg8_8c-2ubuntu11_arm64.deb ... 106s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 106s Selecting previously unselected package liblerc4:arm64. 106s Preparing to unpack .../035-liblerc4_4.0.0+ds-4ubuntu2_arm64.deb ... 106s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 106s Selecting previously unselected package libsharpyuv0:arm64. 106s Preparing to unpack .../036-libsharpyuv0_1.4.0-0.1_arm64.deb ... 106s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 106s Selecting previously unselected package libwebp7:arm64. 106s Preparing to unpack .../037-libwebp7_1.4.0-0.1_arm64.deb ... 106s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 106s Selecting previously unselected package libtiff6:arm64. 106s Preparing to unpack .../038-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 106s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 106s Selecting previously unselected package libproj25:arm64. 106s Preparing to unpack .../039-libproj25_9.4.1-1_arm64.deb ... 106s Unpacking libproj25:arm64 (9.4.1-1) ... 106s Selecting previously unselected package libgeotiff5:arm64. 106s Preparing to unpack .../040-libgeotiff5_1.7.3-1_arm64.deb ... 106s Unpacking libgeotiff5:arm64 (1.7.3-1) ... 106s Selecting previously unselected package libgif7:arm64. 106s Preparing to unpack .../041-libgif7_5.2.2-1ubuntu1_arm64.deb ... 106s Unpacking libgif7:arm64 (5.2.2-1ubuntu1) ... 106s Selecting previously unselected package libsz2:arm64. 106s Preparing to unpack .../042-libsz2_1.1.3-1_arm64.deb ... 106s Unpacking libsz2:arm64 (1.1.3-1) ... 106s Selecting previously unselected package libhdf4-0-alt:arm64. 106s Preparing to unpack .../043-libhdf4-0-alt_4.3.0-1_arm64.deb ... 106s Unpacking libhdf4-0-alt:arm64 (4.3.0-1) ... 107s Selecting previously unselected package libhdf5-103-1t64:arm64. 107s Preparing to unpack .../044-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 107s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 107s Selecting previously unselected package libheif-plugin-aomdec:arm64. 107s Preparing to unpack .../045-libheif-plugin-aomdec_1.18.1-2_arm64.deb ... 107s Unpacking libheif-plugin-aomdec:arm64 (1.18.1-2) ... 107s Selecting previously unselected package libheif-plugin-libde265:arm64. 107s Preparing to unpack .../046-libheif-plugin-libde265_1.18.1-2_arm64.deb ... 107s Unpacking libheif-plugin-libde265:arm64 (1.18.1-2) ... 107s Selecting previously unselected package libheif1:arm64. 107s Preparing to unpack .../047-libheif1_1.18.1-2_arm64.deb ... 107s Unpacking libheif1:arm64 (1.18.1-2) ... 107s Selecting previously unselected package liburiparser1:arm64. 107s Preparing to unpack .../048-liburiparser1_0.9.8+dfsg-1_arm64.deb ... 107s Unpacking liburiparser1:arm64 (0.9.8+dfsg-1) ... 107s Selecting previously unselected package libkmlbase1t64:arm64. 107s Preparing to unpack .../049-libkmlbase1t64_1.3.0-12build1_arm64.deb ... 107s Unpacking libkmlbase1t64:arm64 (1.3.0-12build1) ... 107s Selecting previously unselected package libkmldom1t64:arm64. 107s Preparing to unpack .../050-libkmldom1t64_1.3.0-12build1_arm64.deb ... 107s Unpacking libkmldom1t64:arm64 (1.3.0-12build1) ... 107s Selecting previously unselected package libkmlengine1t64:arm64. 107s Preparing to unpack .../051-libkmlengine1t64_1.3.0-12build1_arm64.deb ... 107s Unpacking libkmlengine1t64:arm64 (1.3.0-12build1) ... 107s Selecting previously unselected package mysql-common. 107s Preparing to unpack .../052-mysql-common_5.8+1.1.1_all.deb ... 107s Unpacking mysql-common (5.8+1.1.1) ... 107s Selecting previously unselected package libmysqlclient21:arm64. 107s Preparing to unpack .../053-libmysqlclient21_8.0.39-1_arm64.deb ... 107s Unpacking libmysqlclient21:arm64 (8.0.39-1) ... 107s Selecting previously unselected package libhdf5-hl-100t64:arm64. 107s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 107s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 107s Selecting previously unselected package libnetcdf19t64:arm64. 107s Preparing to unpack .../055-libnetcdf19t64_1%3a4.9.2-6ubuntu1_arm64.deb ... 107s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu1) ... 107s Selecting previously unselected package libltdl7:arm64. 107s Preparing to unpack .../056-libltdl7_2.4.7-7build1_arm64.deb ... 107s Unpacking libltdl7:arm64 (2.4.7-7build1) ... 107s Selecting previously unselected package libodbc2:arm64. 107s Preparing to unpack .../057-libodbc2_2.3.12-1ubuntu1_arm64.deb ... 107s Unpacking libodbc2:arm64 (2.3.12-1ubuntu1) ... 107s Selecting previously unselected package unixodbc-common. 107s Preparing to unpack .../058-unixodbc-common_2.3.12-1ubuntu1_all.deb ... 107s Unpacking unixodbc-common (2.3.12-1ubuntu1) ... 107s Selecting previously unselected package libodbcinst2:arm64. 107s Preparing to unpack .../059-libodbcinst2_2.3.12-1ubuntu1_arm64.deb ... 107s Unpacking libodbcinst2:arm64 (2.3.12-1ubuntu1) ... 107s Selecting previously unselected package libogdi4.1:arm64. 107s Preparing to unpack .../060-libogdi4.1_4.1.1+ds-4_arm64.deb ... 107s Unpacking libogdi4.1:arm64 (4.1.1+ds-4) ... 107s Selecting previously unselected package libopenjp2-7:arm64. 107s Preparing to unpack .../061-libopenjp2-7_2.5.0-2ubuntu1_arm64.deb ... 107s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu1) ... 107s Selecting previously unselected package liblcms2-2:arm64. 107s Preparing to unpack .../062-liblcms2-2_2.14-2build1_arm64.deb ... 107s Unpacking liblcms2-2:arm64 (2.14-2build1) ... 107s Selecting previously unselected package libpoppler140:arm64. 107s Preparing to unpack .../063-libpoppler140_24.08.0-1_arm64.deb ... 107s Unpacking libpoppler140:arm64 (24.08.0-1) ... 107s Selecting previously unselected package libpq5:arm64. 107s Preparing to unpack .../064-libpq5_17.0-1_arm64.deb ... 107s Unpacking libpq5:arm64 (17.0-1) ... 108s Selecting previously unselected package libqhull-r8.0:arm64. 108s Preparing to unpack .../065-libqhull-r8.0_2020.2-6build1_arm64.deb ... 108s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 108s Selecting previously unselected package librttopo1:arm64. 108s Preparing to unpack .../066-librttopo1_1.1.0-3build2_arm64.deb ... 108s Unpacking librttopo1:arm64 (1.1.0-3build2) ... 108s Selecting previously unselected package libspatialite8t64:arm64. 108s Preparing to unpack .../067-libspatialite8t64_5.1.0-3build1_arm64.deb ... 108s Unpacking libspatialite8t64:arm64 (5.1.0-3build1) ... 108s Selecting previously unselected package libxerces-c3.2t64:arm64. 108s Preparing to unpack .../068-libxerces-c3.2t64_3.2.4+debian-1.3_arm64.deb ... 108s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3) ... 108s Selecting previously unselected package libgdal35:arm64. 108s Preparing to unpack .../069-libgdal35_3.9.1+dfsg-1build2_arm64.deb ... 108s Unpacking libgdal35:arm64 (3.9.1+dfsg-1build2) ... 108s Selecting previously unselected package libgomp1:arm64. 108s Preparing to unpack .../070-libgomp1_14.2.0-7ubuntu1_arm64.deb ... 108s Unpacking libgomp1:arm64 (14.2.0-7ubuntu1) ... 108s Selecting previously unselected package libgraphite2-3:arm64. 108s Preparing to unpack .../071-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 108s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 108s Selecting previously unselected package libharfbuzz0b:arm64. 108s Preparing to unpack .../072-libharfbuzz0b_9.0.0-1_arm64.deb ... 108s Unpacking libharfbuzz0b:arm64 (9.0.0-1) ... 108s Selecting previously unselected package x11-common. 108s Preparing to unpack .../073-x11-common_1%3a7.7+23ubuntu3_all.deb ... 108s Unpacking x11-common (1:7.7+23ubuntu3) ... 108s Selecting previously unselected package libice6:arm64. 108s Preparing to unpack .../074-libice6_2%3a1.0.10-1build3_arm64.deb ... 108s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 108s Selecting previously unselected package libthai-data. 108s Preparing to unpack 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(1:1.2.3-1build3) ... 109s Selecting previously unselected package libtk8.6:arm64. 109s Preparing to unpack .../086-libtk8.6_8.6.14-1build1_arm64.deb ... 109s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 109s Selecting previously unselected package libudunits2-data. 109s Preparing to unpack .../087-libudunits2-data_2.2.28-7build1_all.deb ... 109s Unpacking libudunits2-data (2.2.28-7build1) ... 109s Selecting previously unselected package libudunits2-0. 109s Preparing to unpack .../088-libudunits2-0_2.2.28-7build1_arm64.deb ... 109s Unpacking libudunits2-0 (2.2.28-7build1) ... 109s Selecting previously unselected package libxt6t64:arm64. 109s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 109s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 109s Selecting previously unselected package zip. 109s Preparing to unpack .../090-zip_3.0-14_arm64.deb ... 109s Unpacking zip (3.0-14) ... 109s Selecting previously unselected package unzip. 109s Preparing to unpack .../091-unzip_6.0-28ubuntu6_arm64.deb ... 109s Unpacking unzip (6.0-28ubuntu6) ... 109s Selecting previously unselected package xdg-utils. 109s Preparing to unpack .../092-xdg-utils_1.2.1-0ubuntu1_all.deb ... 109s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 109s Selecting previously unselected package r-base-core. 109s Preparing to unpack .../093-r-base-core_4.4.1-1_arm64.deb ... 109s Unpacking r-base-core (4.4.1-1) ... 109s Selecting previously unselected package r-cran-littler. 109s Preparing to unpack .../094-r-cran-littler_0.3.20-1_arm64.deb ... 109s Unpacking r-cran-littler (0.3.20-1) ... 109s Selecting previously unselected package littler. 110s Preparing to unpack .../095-littler_0.3.20-1_all.deb ... 110s Unpacking littler (0.3.20-1) ... 110s Selecting previously unselected package r-cran-abind. 110s Preparing to unpack .../096-r-cran-abind_1.4-5-2_all.deb ... 110s Unpacking r-cran-abind (1.4-5-2) ... 110s Selecting previously unselected package r-cran-mass. 110s Preparing to unpack .../097-r-cran-mass_7.3-61-1_arm64.deb ... 110s Unpacking r-cran-mass (7.3-61-1) ... 110s Selecting previously unselected package r-cran-class. 110s Preparing to unpack .../098-r-cran-class_7.3-22-2build1_arm64.deb ... 110s Unpacking r-cran-class (7.3-22-2build1) ... 110s Selecting previously unselected package r-cran-proxy. 110s Preparing to unpack .../099-r-cran-proxy_0.4-27-1_arm64.deb ... 110s Unpacking r-cran-proxy (0.4-27-1) ... 110s Selecting previously unselected package r-cran-e1071. 110s Preparing to unpack .../100-r-cran-e1071_1.7-14-1_arm64.deb ... 110s Unpacking r-cran-e1071 (1.7-14-1) ... 110s Selecting previously unselected package r-cran-kernsmooth. 110s Preparing to unpack .../101-r-cran-kernsmooth_2.23-24-1_arm64.deb ... 110s Unpacking r-cran-kernsmooth (2.23-24-1) ... 110s Selecting previously unselected package r-cran-classint. 110s Preparing to unpack .../102-r-cran-classint_0.4-10+dfsg-1_arm64.deb ... 110s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 110s Selecting previously unselected package r-cran-codetools. 110s Preparing to unpack .../103-r-cran-codetools_0.2-20-1_all.deb ... 110s Unpacking r-cran-codetools (0.2-20-1) ... 110s Selecting previously unselected package r-cran-dbi. 110s Preparing to unpack .../104-r-cran-dbi_1.2.3-1_all.deb ... 110s Unpacking r-cran-dbi (1.2.3-1) ... 110s Selecting previously unselected package r-cran-digest. 110s Preparing to unpack .../105-r-cran-digest_0.6.36-1_arm64.deb ... 110s Unpacking r-cran-digest (0.6.36-1) ... 110s Selecting previously unselected package r-cran-dotcall64. 110s Preparing to unpack .../106-r-cran-dotcall64_1.1-1-1_arm64.deb ... 110s Unpacking r-cran-dotcall64 (1.1-1-1) ... 110s Selecting previously unselected package r-cran-pkgkitten. 110s Preparing to unpack .../107-r-cran-pkgkitten_0.2.4-1_all.deb ... 110s Unpacking r-cran-pkgkitten (0.2.4-1) ... 110s Selecting previously unselected package r-cran-rcpp. 110s Preparing to unpack .../108-r-cran-rcpp_1.0.13-1_arm64.deb ... 110s Unpacking r-cran-rcpp (1.0.13-1) ... 110s Selecting previously unselected package r-cran-spam. 110s Preparing to unpack .../109-r-cran-spam_2.10-0-1_arm64.deb ... 110s Unpacking r-cran-spam (2.10-0-1) ... 110s Selecting previously unselected package r-cran-viridislite. 110s Preparing to unpack .../110-r-cran-viridislite_0.4.2-2_all.deb ... 110s Unpacking r-cran-viridislite (0.4.2-2) ... 110s Selecting previously unselected package r-cran-maps. 110s Preparing to unpack .../111-r-cran-maps_3.4.2-1_arm64.deb ... 110s Unpacking r-cran-maps (3.4.2-1) ... 110s Selecting previously unselected package r-cran-fields. 110s Preparing to unpack .../112-r-cran-fields_16.2-1_arm64.deb ... 110s Unpacking r-cran-fields (16.2-1) ... 111s Selecting previously unselected package r-cran-fnn. 111s Preparing to unpack .../113-r-cran-fnn_1.1.4-1_arm64.deb ... 111s Unpacking r-cran-fnn (1.1.4-1) ... 111s Selecting previously unselected package r-cran-globals. 111s Preparing to unpack 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r-cran-lattice (0.22-6-1) ... 111s Selecting previously unselected package r-cran-sp. 111s Preparing to unpack .../120-r-cran-sp_1%3a2.1-2+dfsg-1_arm64.deb ... 111s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 111s Selecting previously unselected package r-cran-zoo. 111s Preparing to unpack .../121-r-cran-zoo_1.8-12-2_arm64.deb ... 111s Unpacking r-cran-zoo (1.8-12-2) ... 111s Selecting previously unselected package r-cran-magrittr. 111s Preparing to unpack .../122-r-cran-magrittr_2.0.3-1_arm64.deb ... 111s Unpacking r-cran-magrittr (2.0.3-1) ... 111s Selecting previously unselected package r-cran-wk. 111s Preparing to unpack .../123-r-cran-wk_0.9.1-1_arm64.deb ... 111s Unpacking r-cran-wk (0.9.1-1) ... 111s Selecting previously unselected package r-cran-s2. 111s Preparing to unpack .../124-r-cran-s2_1.1.6-1build2_arm64.deb ... 111s Unpacking r-cran-s2 (1.1.6-1build2) ... 111s Selecting previously unselected package r-cran-units. 111s Preparing to unpack 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previously unselected package r-cran-rlang. 112s Preparing to unpack .../131-r-cran-rlang_1.1.4-1_arm64.deb ... 112s Unpacking r-cran-rlang (1.1.4-1) ... 112s Selecting previously unselected package r-cran-stars. 112s Preparing to unpack .../132-r-cran-stars_0.6-6-1_all.deb ... 112s Unpacking r-cran-stars (0.6-6-1) ... 112s Selecting previously unselected package r-cran-gstat. 112s Preparing to unpack .../133-r-cran-gstat_2.1-1-2_arm64.deb ... 112s Unpacking r-cran-gstat (2.1-1-2) ... 112s Selecting previously unselected package r-cran-mapdata. 112s Preparing to unpack .../134-r-cran-mapdata_2.3.1-1_arm64.deb ... 112s Unpacking r-cran-mapdata (2.3.1-1) ... 112s Selecting previously unselected package r-cran-terra. 112s Preparing to unpack .../135-r-cran-terra_1.7-78-1_arm64.deb ... 112s Unpacking r-cran-terra (1.7-78-1) ... 112s Selecting previously unselected package r-cran-raster. 112s Preparing to unpack .../136-r-cran-raster_3.6-26-1_arm64.deb ... 112s Unpacking r-cran-raster 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(2.40-1ubuntu3) ... 116s Processing triggers for man-db (2.12.1-3) ... 117s Processing triggers for install-info (7.1.1-1) ... 126s (Reading database ... 86254 files and directories currently installed.) 126s Removing autopkgtest-satdep (0) ... 127s autopkgtest [18:44:12]: test run-unit-test: [----------------------- 127s BEGIN TEST allier.R 127s 127s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 127s Copyright (C) 2024 The R Foundation for Statistical Computing 127s Platform: aarch64-unknown-linux-gnu 127s 127s R is free software and comes with ABSOLUTELY NO WARRANTY. 127s You are welcome to redistribute it under certain conditions. 127s Type 'license()' or 'licence()' for distribution details. 127s 127s R is a collaborative project with many contributors. 127s Type 'contributors()' for more information and 127s 'citation()' on how to cite R or R packages in publications. 127s 127s Type 'demo()' for some demos, 'help()' for on-line help, or 127s 'help.start()' for an HTML browser interface to help. 127s Type 'q()' to quit R. 127s 128s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 128s > library(sp) 128s > library(gstat) 128s > 128s > # some data 128s > x <- c(215, 330, 410, 470, 545) 128s > y <- c(230, 310, 330, 340, 365) 128s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 128s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 128s > Allier <- data.frame(x, y, fc, por) 128s > coordinates(Allier) = ~x+y 128s > 128s > # gstat object for co-kriging using linear model of co-regionalization 128s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 128s + model=vgm(0.00247, "Sph", 480, 0.00166)) 128s > g <- gstat(g, id="por", formula=por~1, data=Allier, 128s + model=vgm(0.00239, "Sph", 480, 0.00118)) 128s > g <- gstat(g, id=c("fc", "por"), 128s + model=vgm(0.00151, "Sph", 480, -0.00124)) 128s > 128s > # predict at single point 128s > g$set = list(choleski = 0) # LDL' 128s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 129s Linear Model of Coregionalization found. Good. 129s [using ordinary cokriging] 129s we're at location X: 450 Y: 350 Z: 0 129s zero block size 129s we're at point X: 450 Y: 350 Z: 0 129s 129s # X: 129s #Matrix: 10 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 1.000000, 0.000000), # row 2 129s c( 1.000000, 0.000000), # row 3 129s c( 1.000000, 0.000000), # row 4 129s c( 1.000000, 0.000000), # row 5 129s c( 0.000000, 1.000000), # row 6 129s c( 0.000000, 1.000000), # row 7 129s c( 0.000000, 1.000000), # row 8 129s c( 0.000000, 1.000000), # row 9 129s c( 0.000000, 1.000000) # row 10 129s ) 129s [using generalized covariances: max_val - semivariance()] 129s # Covariances (x_i, x_j) matrix C (upper triangle): 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 129s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 129s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 129s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 129s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 129s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 129s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 129s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 129s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 129s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 129s ) 129s 129s # glm->C, LDL' decomposed:: 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 129s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 129s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 129s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 129s ) 129s 129s # X'C-1 X: 129s #Matrix: 2 by 2 129s rbind( 129s c(665.433994, -232.313340), # row 1 129s c(-232.313340, 729.440848) # row 2 129s ) 129s 129s # beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Cov(beta), (X'C-1 X)-1: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001691, 0.000538), # row 1 129s c( 0.000538, 0.001542) # row 2 129s ) 129s 129s # Corr(beta): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.333447), # row 1 129s c( 0.333447, 1.000000) # row 2 129s ) 129s 129s # X0 (X values at prediction location x0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 0.000000, 1.000000) # row 2 129s ) 129s 129s # BLUE(mu), E(y(x0)) = X0'beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Covariances (x_i, x_0), C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.000638, 0.000390), # row 1 129s c( 0.001516, 0.000927), # row 2 129s c( 0.002126, 0.001300), # row 3 129s c( 0.002298, 0.001405), # row 4 129s c( 0.001738, 0.001062), # row 5 129s c( 0.000390, 0.000618), # row 6 129s c( 0.000927, 0.001467), # row 7 129s c( 0.001300, 0.002057), # row 8 129s c( 0.001405, 0.002223), # row 9 129s c( 0.001062, 0.001681) # row 10 129s ) 129s 129s # C-1 C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.008927, -0.017995), # row 1 129s c( 0.061935, -0.028550), # row 2 129s c( 0.225195, 0.078344), # row 3 129s c( 0.356735, 0.190177), # row 4 129s c( 0.094128, -0.023136), # row 5 129s c(-0.021119, 0.004935), # row 6 129s c(-0.033508, 0.055601), # row 7 129s c( 0.091947, 0.242576), # row 8 129s c( 0.223200, 0.398927), # row 9 129s c(-0.027153, 0.088995) # row 10 129s ) 129s 129s # [a] Cov_ij(B,B) or Cov_ij(0,0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.004130, 0.000270), # row 1 129s c( 0.000270, 0.003570) # row 2 129s ) 129s 129s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.000129, -0.000107), # row 1 129s c(-0.000107, 0.000089) # row 2 129s ) 129s 129s # [b] c0'C-1 c0: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001926, 0.001532), # row 1 129s c( 0.001532, 0.001931) # row 2 129s ) 129s 129s # Best Linear Unbiased Predictor: 129s #Vector: dim: 2 129s c( 0.253090, 0.441258) 129s # MSPE ([a]-[b]+[c]): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.002332, -0.001369), # row 1 129s c(-0.001369, 0.001729) # row 2 129s ) 129s 129s # kriging weights: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.071177, -0.064988), # row 1 129s c( 0.108451, -0.066123), # row 2 129s c( 0.268160, 0.043141), # row 3 129s c( 0.401959, 0.153312), # row 4 129s c( 0.150253, -0.065342), # row 5 129s c(-0.076273, 0.056759), # row 6 129s c(-0.077605, 0.093781), # row 7 129s c( 0.050632, 0.277731), # row 8 129s c( 0.179933, 0.435972), # row 9 129s c(-0.076688, 0.135756) # row 10 129s ) 129s 129s 129s > g$set = list(choleski = 1) # Choleski 129s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 129s Linear Model of Coregionalization found. Good. 129s [using ordinary cokriging] 129s we're at location X: 450 Y: 350 Z: 0 129s zero block size 129s we're at point X: 450 Y: 350 Z: 0 129s 129s # X: 129s #Matrix: 10 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 1.000000, 0.000000), # row 2 129s c( 1.000000, 0.000000), # row 3 129s c( 1.000000, 0.000000), # row 4 129s c( 1.000000, 0.000000), # row 5 129s c( 0.000000, 1.000000), # row 6 129s c( 0.000000, 1.000000), # row 7 129s c( 0.000000, 1.000000), # row 8 129s c( 0.000000, 1.000000), # row 9 129s c( 0.000000, 1.000000) # row 10 129s ) 129s [using generalized covariances: max_val - semivariance()] 129s # Covariances (x_i, x_j) matrix C (upper triangle): 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 129s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 129s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 129s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 129s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 129s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 129s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 129s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 129s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 129s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 129s ) 129s 129s # glm->C, Choleski decomposed:: 129s #Matrix: 10 by 10 129s rbind( 129s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 129s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 129s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 129s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 129s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 129s ) 129s 129s # X'C-1 X: 129s #Matrix: 2 by 2 129s rbind( 129s c(665.433994, -232.313340), # row 1 129s c(-232.313340, 729.440848) # row 2 129s ) 129s 129s # beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Cov(beta), (X'C-1 X)-1: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001691, 0.000538), # row 1 129s c( 0.000538, 0.001542) # row 2 129s ) 129s 129s # Corr(beta): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.333447), # row 1 129s c( 0.333447, 1.000000) # row 2 129s ) 129s 129s # X0 (X values at prediction location x0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 1.000000, 0.000000), # row 1 129s c( 0.000000, 1.000000) # row 2 129s ) 129s 129s # BLUE(mu), E(y(x0)) = X0'beta: 129s #Vector: dim: 2 129s c( 0.244216, 0.440933) 129s # Covariances (x_i, x_0), C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.000638, 0.000390), # row 1 129s c( 0.001516, 0.000927), # row 2 129s c( 0.002126, 0.001300), # row 3 129s c( 0.002298, 0.001405), # row 4 129s c( 0.001738, 0.001062), # row 5 129s c( 0.000390, 0.000618), # row 6 129s c( 0.000927, 0.001467), # row 7 129s c( 0.001300, 0.002057), # row 8 129s c( 0.001405, 0.002223), # row 9 129s c( 0.001062, 0.001681) # row 10 129s ) 129s 129s # C-1 C0: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.008927, -0.017995), # row 1 129s c( 0.061935, -0.028550), # row 2 129s c( 0.225195, 0.078344), # row 3 129s c( 0.356735, 0.190177), # row 4 129s c( 0.094128, -0.023136), # row 5 129s c(-0.021119, 0.004935), # row 6 129s c(-0.033508, 0.055601), # row 7 129s c( 0.091947, 0.242576), # row 8 129s c( 0.223200, 0.398927), # row 9 129s c(-0.027153, 0.088995) # row 10 129s ) 129s 129s # [a] Cov_ij(B,B) or Cov_ij(0,0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.004130, 0.000270), # row 1 129s c( 0.000270, 0.003570) # row 2 129s ) 129s 129s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.000129, -0.000107), # row 1 129s c(-0.000107, 0.000089) # row 2 129s ) 129s 129s # [b] c0'C-1 c0: 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.001926, 0.001532), # row 1 129s c( 0.001532, 0.001931) # row 2 129s ) 129s 129s # Best Linear Unbiased Predictor: 129s #Vector: dim: 2 129s c( 0.253090, 0.441258) 129s # MSPE ([a]-[b]+[c]): 129s #Matrix: 2 by 2 129s rbind( 129s c( 0.002332, -0.001369), # row 1 129s c(-0.001369, 0.001729) # row 2 129s ) 129s 129s # kriging weights: 129s #Matrix: 10 by 2 129s rbind( 129s c( 0.071177, -0.064988), # row 1 129s c( 0.108451, -0.066123), # row 2 129s c( 0.268160, 0.043141), # row 3 129s c( 0.401959, 0.153312), # row 4 129s c( 0.150253, -0.065342), # row 5 129s c(-0.076273, 0.056759), # row 6 129s c(-0.077605, 0.093781), # row 7 129s c( 0.050632, 0.277731), # row 8 129s c( 0.179933, 0.435972), # row 9 129s c(-0.076688, 0.135756) # row 10 129s ) 129s 129s 129s > all.equal(A,B) 129s [1] TRUE 129s > 129s > # TRUE 129s > 129s BEGIN TEST blockkr.R 129s 129s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 129s Copyright (C) 2024 The R Foundation for Statistical Computing 129s Platform: aarch64-unknown-linux-gnu 129s 129s R is free software and comes with ABSOLUTELY NO WARRANTY. 129s You are welcome to redistribute it under certain conditions. 129s Type 'license()' or 'licence()' for distribution details. 129s 129s R is a collaborative project with many contributors. 129s Type 'contributors()' for more information and 129s 'citation()' on how to cite R or R packages in publications. 129s 129s Type 'demo()' for some demos, 'help()' for on-line help, or 129s 'help.start()' for an HTML browser interface to help. 129s Type 'q()' to quit R. 129s 129s > library(sp) 129s > data(meuse) 129s > coordinates(meuse) = c("x", "y") 129s > new.locs <- SpatialPoints(data.frame( 129s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 129s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 129s > library(gstat) 130s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 130s + block = c(40,40), nmax = 40) 130s [using ordinary kriging] 130s coordinates var1.pred var1.var 130s 1 (181170, 333250) 268.7576 19447.67 130s 2 (180310, 332189) 663.4915 16991.33 130s 3 (180205, 331707) 251.4606 21579.71 130s 4 (178673, 330066) 532.5776 73807.91 130s 5 (178770, 330675) 664.4039 23589.17 130s 6 (178270, 331075) 565.5436 155113.23 130s > 130s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 130s > 130s > disc = c(-15,-5,5,15) 130s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 130s > block.irreg 130s x y 130s 1 -15 -15 130s 2 -5 -15 130s 3 5 -15 130s 4 15 -15 130s 5 -15 -5 130s 6 -5 -5 130s 7 5 -5 130s 8 15 -5 130s 9 -15 5 130s 10 -5 5 130s 11 5 5 130s 12 15 5 130s 13 -15 15 130s 14 -5 15 130s 15 5 15 130s 16 15 15 130s > 130s > # first disable default Gaussian quadrature used for block integration, by 130s > # setting nblockdiscr explicitly: 130s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 130s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 130s [using ordinary kriging] 130s coordinates var1.pred var1.var 130s 1 (181170, 333250) 268.7324 19568.76 130s > # now pass the same block discretization as block.irreg: 130s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 130s + block = block.irreg, nmax = 40) 130s [using ordinary kriging] 130s coordinates var1.pred var1.var 130s 1 (181170, 333250) 268.7324 19568.76 130s > # check weights argument: 130s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 130s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 130s + block = block.irreg, nmax = 40) 130s [using ordinary kriging] 130s coordinates var1.pred var1.var 130s 1 (181170, 333250) 268.7324 19568.76 130s > 130s BEGIN TEST covtable.R 130s 130s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 130s Copyright (C) 2024 The R Foundation for Statistical Computing 130s Platform: aarch64-unknown-linux-gnu 130s 130s R is free software and comes with ABSOLUTELY NO WARRANTY. 130s You are welcome to redistribute it under certain conditions. 130s Type 'license()' or 'licence()' for distribution details. 130s 130s R is a collaborative project with many contributors. 130s Type 'contributors()' for more information and 130s 'citation()' on how to cite R or R packages in publications. 130s 130s Type 'demo()' for some demos, 'help()' for on-line help, or 130s 'help.start()' for an HTML browser interface to help. 130s Type 'q()' to quit R. 130s 130s > library(gstat) 131s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 131s > d$z=1:4 131s > vv=vgm(model = "Tab", covtable = 131s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 131s > vv 131s model psill maxdist 131s 1 Tab NA 1 131s covariance table: 131s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 131s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 131s [using ordinary kriging] 131s x y var1.pred var1.var 131s 1 0 0 2.5 1.017767 131s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 2.5 1.017863 132s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 1.5 1.267767 132s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 132s [using ordinary kriging] 132s x y var1.pred var1.var 132s 1 0 0 1.5 1.267863 132s > 132s BEGIN TEST cv.R 132s 132s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 132s Copyright (C) 2024 The R Foundation for Statistical Computing 132s Platform: aarch64-unknown-linux-gnu 132s 132s R is free software and comes with ABSOLUTELY NO WARRANTY. 132s You are welcome to redistribute it under certain conditions. 132s Type 'license()' or 'licence()' for distribution details. 132s 132s R is a collaborative project with many contributors. 132s Type 'contributors()' for more information and 132s 'citation()' on how to cite R or R packages in publications. 132s 132s Type 'demo()' for some demos, 'help()' for on-line help, or 132s 'help.start()' for an HTML browser interface to help. 132s Type 'q()' to quit R. 132s 132s > # try bivariate cokriging; cross validate first variable 132s > library(sp) 132s > data(meuse) 132s > library(gstat) 132s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 132s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 132s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 132s > v=variogram(g) 133s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 133s > g=fit.lmc(v, g) 133s > g 133s data: 133s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 133s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 133s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 133s variograms: 133s model psill range 133s log-zinc Sph 0.7132435 1000 133s log-lead Sph 0.6133020 1000 133s log-copper Sph 0.3634211 1000 133s log-zinc.log-lead Sph 0.6367012 1000 133s log-zinc.log-copper Sph 0.4570044 1000 133s log-lead.log-copper Sph 0.3934910 1000 133s ~x + y 133s > set.seed(13131) 133s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s log.zinc.pred log.zinc.var observed residual 133s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 Warning message: 133s In checkNames(value) : 133s attempt to set invalid names: this may lead to problems later on. See ?make.names 133s 133s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 133s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 133s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 133s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 133s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 133s zscore fold x y 133s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 133s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 133s Median :-0.10755 Median :3.000 Median :179991 Median :331633 133s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 133s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 133s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 133s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s Intrinsic Correlation found. Good. 133s [using ordinary cokriging] 133s log.zinc.pred log.zinc.var observed residual 133s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 133s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 133s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 133s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 133s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 133s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 133s zscore fold Warning message: 133s In checkNames(value) : 133s attempt to set invalid names: this may lead to problems later on. See ?make.names 133s x y 133s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 133s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 133s Median : 0.007242 Median :3.000 Median :179991 Median :331633 133s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 133s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 133s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 133s > 133s BEGIN TEST cv3d.R 133s 133s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 133s Copyright (C) 2024 The R Foundation for Statistical Computing 133s Platform: aarch64-unknown-linux-gnu 133s 133s R is free software and comes with ABSOLUTELY NO WARRANTY. 133s You are welcome to redistribute it under certain conditions. 133s Type 'license()' or 'licence()' for distribution details. 133s 133s R is a collaborative project with many contributors. 133s Type 'contributors()' for more information and 133s 'citation()' on how to cite R or R packages in publications. 133s 133s Type 'demo()' for some demos, 'help()' for on-line help, or 133s 'help.start()' for an HTML browser interface to help. 133s Type 'q()' to quit R. 133s 133s > options(digits = 4) 133s > set.seed(1131) 133s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 133s > library(gstat) 134s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 135s > summary(xx) 135s var1.pred var1.var observed residual 135s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 135s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 135s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 135s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 135s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 135s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 135s zscore fold x y 135s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 135s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 135s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 135s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 135s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 135s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 135s z 135s Min. :0.0016 135s 1st Qu.:0.1865 135s Median :0.4485 135s Mean :0.4714 135s 3rd Qu.:0.7240 135s Max. :0.9942 135s > 135s BEGIN TEST fit.R 135s 135s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 135s Copyright (C) 2024 The R Foundation for Statistical Computing 135s Platform: aarch64-unknown-linux-gnu 135s 135s R is free software and comes with ABSOLUTELY NO WARRANTY. 135s You are welcome to redistribute it under certain conditions. 135s Type 'license()' or 'licence()' for distribution details. 135s 135s R is a collaborative project with many contributors. 135s Type 'contributors()' for more information and 135s 'citation()' on how to cite R or R packages in publications. 135s 135s Type 'demo()' for some demos, 'help()' for on-line help, or 135s 'help.start()' for an HTML browser interface to help. 135s Type 'q()' to quit R. 135s 135s > library(sp) 135s > data(meuse) 135s > library(gstat) 136s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 136s > v$gamma=c(0.5,1,2,3,3) 136s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 136s model psill range 136s 1 Nug 0.000000 0.00 136s 2 Sph 7.878195 1567.77 136s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 136s Warning message: 136s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 136s partial sill or nugget fixed at zero value 136s model psill range 136s 1 Nug 0.000000 0.00 136s 2 Sph 7.878195 1567.77 136s > 136s BEGIN TEST krige0.R 136s 136s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 136s Copyright (C) 2024 The R Foundation for Statistical Computing 136s Platform: aarch64-unknown-linux-gnu 136s 136s R is free software and comes with ABSOLUTELY NO WARRANTY. 136s You are welcome to redistribute it under certain conditions. 136s Type 'license()' or 'licence()' for distribution details. 136s 136s R is a collaborative project with many contributors. 136s Type 'contributors()' for more information and 136s 'citation()' on how to cite R or R packages in publications. 136s 136s Type 'demo()' for some demos, 'help()' for on-line help, or 136s 'help.start()' for an HTML browser interface to help. 136s Type 'q()' to quit R. 136s 136s > # test -- load data: 136s > library(sp) 137s > data(meuse) 137s > coordinates(meuse) = ~x+y 137s > data(meuse.grid) 137s > gridded(meuse.grid) = ~x+y 137s > 137s > library(gstat) 138s > # test -- idw 138s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 138s > x <- idw(zinc~1, meuse, meuse.grid) 138s [inverse distance weighted interpolation] 138s > all.equal(x$var1.pred, meuse.grid$idw) 138s [1] TRUE 138s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 138s > v = vgm(1, "Exp", 500) 138s > # test sk: 138s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 138s > rownames(x0$pred)=NULL 138s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 138s [using simple kriging] 138s > all.equal(x$var1.pred, x0$pred[,1]) 138s [1] TRUE 138s > all.equal(x$var1.var, x0$var) 138s [1] TRUE 138s > # test ok: 138s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 138s > rownames(x0$pred)=NULL 138s > names(x0$var)=NULL 138s > x <- krige(zinc~1, meuse, meuse.grid, v) 139s [using ordinary kriging] 139s > all.equal(x$var1.pred, x0$pred[,1]) 139s [1] TRUE 139s > all.equal(x$var1.var, x0$var) 139s [1] TRUE 139s > # test uk: 139s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 139s > rownames(x0$pred)=NULL 139s > names(x0$var)=NULL 139s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 139s [using universal kriging] 139s > all.equal(x$var1.pred, x0$pred[,1]) 139s [1] TRUE 139s > all.equal(x$var1.var, x0$var) 139s [1] TRUE 139s > 139s BEGIN TEST line.R 139s 139s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 139s Copyright (C) 2024 The R Foundation for Statistical Computing 139s Platform: aarch64-unknown-linux-gnu 139s 139s R is free software and comes with ABSOLUTELY NO WARRANTY. 139s You are welcome to redistribute it under certain conditions. 139s Type 'license()' or 'licence()' for distribution details. 139s 139s R is a collaborative project with many contributors. 139s Type 'contributors()' for more information and 139s 'citation()' on how to cite R or R packages in publications. 139s 139s Type 'demo()' for some demos, 'help()' for on-line help, or 139s 'help.start()' for an HTML browser interface to help. 139s Type 'q()' to quit R. 139s 139s > options(digits=5) 139s > library(sp) 139s > data(meuse.grid) 139s > gridded(meuse.grid) = ~x+y 140s > data(meuse) 140s > coordinates(meuse) = ~x+y 140s > 140s > # choose arbitrary line over the grid: 140s > image(meuse.grid["dist"],axes=T) 140s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 140s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 140s > plot(Sl,add=T,col='green') 140s > 140s > # use the default spsample arguments of predict.gstat: 140s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 140s > plot(pts, pch=3, cex=.2, add=T) 140s > 140s > library(gstat) 140s > v = vgm(.6, "Sph", 900, .06) 140s > out1 = krige(log(zinc)~1, meuse, Sl, v) 140s [using ordinary kriging] 140s > out1 140s An object of class "SpatialLinesDataFrame" 140s Slot "data": 140s x y var1.pred var1.var 140s a 180333 332167 6.1618 0.008025 140s 140s Slot "lines": 140s [[1]] 140s An object of class "Lines" 140s Slot "Lines": 140s [[1]] 140s An object of class "Line" 140s Slot "coords": 140s [,1] [,2] 140s [1,] 180000 331000 140s [2,] 180000 332000 140s [3,] 181000 333500 140s 140s 140s 140s Slot "ID": 140s [1] "a" 140s 140s 140s 140s Slot "bbox": 140s min max 140s x 180000 181000 140s y 331000 333500 140s 140s Slot "proj4string": 140s Coordinate Reference System: 140s Deprecated Proj.4 representation: NA 140s 140s > 140s > points(180333,332167,pch=3,cex=2) 140s > 140s > # use the same line as block discretization, and predict for (0,0) 140s > # (because the block discretizing points are not centered) 140s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 140s [using ordinary kriging] 140s > out2 140s coordinates var1.pred var1.var 140s 1 (0, 0) 6.1618 0.008025 140s > 140s > compare.krigingLines = function(formula, data, newdata, model) { 140s + out1 = krige(formula, data, newdata, model) 140s + pts = spsample(newdata, n=500, 'regular', offset=.5) 140s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 140s + print("difference:") 140s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 140s + } 140s > 140s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 140s [using ordinary kriging] 140s [using ordinary kriging] 140s [1] "difference:" 140s var1.pred var1.var 140s a 0 0 140s > 140s > # one line, consisting of two line segments: 140s > pp2 = rbind(c(181000,333500),c(181000,332500)) 140s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 140s > krige(log(zinc)~1, meuse, Sl2, v) 140s [using ordinary kriging] 140s An object of class "SpatialLinesDataFrame" 140s Slot "data": 140s x y var1.pred var1.var 140s a 180667 332583 6.0424 0.0053191 140s 140s Slot "lines": 140s [[1]] 140s An object of class "Lines" 140s Slot "Lines": 140s [[1]] 140s An object of class "Line" 140s Slot "coords": 140s [,1] [,2] 140s [1,] 180000 331000 140s [2,] 180000 332000 140s [3,] 181000 333500 140s 140s 140s [[2]] 140s An object of class "Line" 140s Slot "coords": 140s [,1] [,2] 140s [1,] 181000 333500 140s [2,] 181000 332500 140s 140s 140s 140s Slot "ID": 140s [1] "a" 140s 140s 140s 140s Slot "bbox": 140s min max 140s x 180000 181000 140s y 331000 333500 140s 140s Slot "proj4string": 140s Coordinate Reference System: 140s Deprecated Proj.4 representation: NA 140s 140s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 140s [using ordinary kriging] 140s [using ordinary kriging] 140s [1] "difference:" 140s var1.pred var1.var 140s a 0 0 140s > 140s > # two seperate line segments: 140s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 140s > krige(log(zinc)~1, meuse, Sl3, v) 140s [using ordinary kriging] 141s An object of class "SpatialLinesDataFrame" 141s Slot "data": 141s x y var1.pred var1.var 141s a 180333 332167 6.1618 0.008025 141s b 181000 333000 5.7060 0.011043 141s 141s Slot "lines": 141s [[1]] 141s An object of class "Lines" 141s Slot "Lines": 141s [[1]] 141s An object of class "Line" 141s Slot "coords": 141s [,1] [,2] 141s [1,] 180000 331000 141s [2,] 180000 332000 141s [3,] 181000 333500 141s 141s 141s 141s Slot "ID": 141s [1] "a" 141s 141s 141s [[2]] 141s An object of class "Lines" 141s Slot "Lines": 141s [[1]] 141s An object of class "Line" 141s Slot "coords": 141s [,1] [,2] 141s [1,] 181000 333500 141s [2,] 181000 332500 141s 141s 141s 141s Slot "ID": 141s [1] "b" 141s 141s 141s 141s Slot "bbox": 141s min max 141s x 180000 181000 141s y 331000 333500 141s 141s Slot "proj4string": 141s Coordinate Reference System: 141s Deprecated Proj.4 representation: NA 141s 141s > 141s BEGIN TEST merge.R 141s 141s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 141s Copyright (C) 2024 The R Foundation for Statistical Computing 141s Platform: aarch64-unknown-linux-gnu 141s 141s R is free software and comes with ABSOLUTELY NO WARRANTY. 141s You are welcome to redistribute it under certain conditions. 141s Type 'license()' or 'licence()' for distribution details. 141s 141s R is a collaborative project with many contributors. 141s Type 'contributors()' for more information and 141s 'citation()' on how to cite R or R packages in publications. 141s 141s Type 'demo()' for some demos, 'help()' for on-line help, or 141s 'help.start()' for an HTML browser interface to help. 141s Type 'q()' to quit R. 141s 141s > options(digits=6) 141s > # illustrates the use of merge, for merging parameters accross variables: 141s > # Z1=m+e1(s) 141s > # Z2=m+e2(s) 141s > # Z1 and Z2 each have a different variogram, but share the parameter m 141s > # see documentation of gstat() function 141s > library(gstat) 141s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 141s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 141s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 141s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 141s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 141s > predict(g, data.frame(x=1,y=1), debug = 32) 142s Intrinsic Correlation found. Good. 142s [using ordinary cokriging] 142s we're at location X: 1 Y: 1 Z: 0 142s zero block size 142s we're at point X: 1 Y: 1 Z: 0 142s 142s # X: 142s #Matrix: 4 by 1 142s rbind( 142s c( 1.000000), # row 1 142s c( 1.000000), # row 2 142s c( 1.000000), # row 3 142s c( 1.000000) # row 4 142s ) 142s [using generalized covariances: max_val - semivariance()] 142s # Covariances (x_i, x_j) matrix C (upper triangle): 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 142s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 142s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 142s ) 142s 142s # glm->C, Choleski decomposed:: 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 142s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 142s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 142s ) 142s 142s # X'C-1 X: 142s #Matrix: 1 by 1 142s rbind( 142s c( 3.245289) # row 1 142s ) 142s 142s # beta: 142s #Vector: dim: 1 142s c( 2.500000) 142s # Cov(beta), (X'C-1 X)-1: 142s #Matrix: 1 by 1 142s rbind( 142s c( 0.308139) # row 1 142s ) 142s 142s # Corr(beta): 142s #Matrix: 1 by 1 142s rbind( 142s c( 1.000000) # row 1 142s ) 142s 142s # X0 (X values at prediction location x0): 142s #Matrix: 1 by 2 142s rbind( 142s c( 1.000000, 1.000000) # row 1 142s ) 142s 142s # BLUE(mu), E(y(x0)) = X0'beta: 142s #Vector: dim: 2 142s c( 2.500000, 2.500000) 142s # Covariances (x_i, x_0), C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.243117, 0.121558), # row 1 142s c( 0.243117, 0.121558), # row 2 142s c( 0.121558, 0.243117), # row 3 142s c( 0.121558, 0.243117) # row 4 142s ) 142s 142s # C-1 C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.206482, 0.089387), # row 1 142s c( 0.206482, 0.089387), # row 2 142s c( 0.089387, 0.206482), # row 3 142s c( 0.089387, 0.206482) # row 4 142s ) 142s 142s # [a] Cov_ij(B,B) or Cov_ij(0,0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 1.000000, 0.500000), # row 1 142s c( 0.500000, 1.000000) # row 2 142s ) 142s 142s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.051360, 0.051360), # row 1 142s c( 0.051360, 0.051360) # row 2 142s ) 142s 142s # [b] c0'C-1 c0: 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.122130, 0.093662), # row 1 142s c( 0.093662, 0.122130) # row 2 142s ) 142s 142s # Best Linear Unbiased Predictor: 142s #Vector: dim: 2 142s c( 2.031619, 2.968381) 142s # MSPE ([a]-[b]+[c]): 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.929230, 0.457698), # row 1 142s c( 0.457698, 0.929230) # row 2 142s ) 142s 142s # kriging weights: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.308548, 0.191452), # row 1 142s c( 0.308548, 0.191452), # row 2 142s c( 0.191452, 0.308548), # row 3 142s c( 0.191452, 0.308548) # row 4 142s ) 142s 142s 142s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 142s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 142s > 142s > # Z1 and Z2 share a regression slope: 142s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 142s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 142s + merge=list(c("d1",2,"d2",2))) 142s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 142s > predict(g, data.frame(x=1,y=1), debug = 32) 142s Intrinsic Correlation found. Good. 142s [using universal cokriging] 142s we're at location X: 1 Y: 1 Z: 0 142s zero block size 142s we're at point X: 1 Y: 1 Z: 0 142s 142s # X: 142s #Matrix: 4 by 3 142s rbind( 142s c( 1.000000, 0.000000, 0.000000), # row 1 142s c( 1.000000, 2.000000, 0.000000), # row 2 142s c( 0.000000, 0.000000, 1.000000), # row 3 142s c( 0.000000, 2.000000, 1.000000) # row 4 142s ) 142s [using generalized covariances: max_val - semivariance()] 142s # Covariances (x_i, x_j) matrix C (upper triangle): 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 142s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 142s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 142s ) 142s 142s # glm->C, Choleski decomposed:: 142s #Matrix: 4 by 4 142s rbind( 142s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 142s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 142s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 142s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 142s ) 142s 142s # X'C-1 X: 142s #Matrix: 3 by 3 142s rbind( 142s c( 1.774607, 1.622645, -0.151962), # row 1 142s c( 1.622645, 7.676050, 1.622645), # row 2 142s c(-0.151962, 1.622645, 1.774607) # row 3 142s ) 142s 142s # beta: 142s #Vector: dim: 3 142s c( 0.000000, 0.500000, 4.000000) 142s # Cov(beta), (X'C-1 X)-1: 142s #Matrix: 3 by 3 142s rbind( 142s c( 0.793363, -0.225695, 0.274305), # row 1 142s c(-0.225695, 0.225695, -0.225695), # row 2 142s c( 0.274305, -0.225695, 0.793363) # row 3 142s ) 142s 142s # Corr(beta): 142s #Matrix: 3 by 3 142s rbind( 142s c( 1.000000, -0.533366, 0.345750), # row 1 142s c(-0.533366, 1.000000, -0.533366), # row 2 142s c( 0.345750, -0.533366, 1.000000) # row 3 142s ) 142s 142s # X0 (X values at prediction location x0): 142s #Matrix: 3 by 2 142s rbind( 142s c( 1.000000, 0.000000), # row 1 142s c( 1.000000, 1.000000), # row 2 142s c( 0.000000, 1.000000) # row 3 142s ) 142s 142s # BLUE(mu), E(y(x0)) = X0'beta: 142s #Vector: dim: 2 142s c( 0.500000, 4.500000) 142s # Covariances (x_i, x_0), C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.243117, 0.121558), # row 1 142s c( 0.243117, 0.121558), # row 2 142s c( 0.121558, 0.243117), # row 3 142s c( 0.121558, 0.243117) # row 4 142s ) 142s 142s # C-1 C0: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.206482, 0.089387), # row 1 142s c( 0.206482, 0.089387), # row 2 142s c( 0.089387, 0.206482), # row 3 142s c( 0.089387, 0.206482) # row 4 142s ) 142s 142s # [a] Cov_ij(B,B) or Cov_ij(0,0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 1.000000, 0.500000), # row 1 142s c( 0.500000, 1.000000) # row 2 142s ) 142s 142s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.203564, -0.100844), # row 1 142s c(-0.100844, 0.203564) # row 2 142s ) 142s 142s # [b] c0'C-1 c0: 142s #Matrix: 2 by 2 142s rbind( 142s c( 0.122130, 0.093662), # row 1 142s c( 0.093662, 0.122130) # row 2 142s ) 142s 142s # Best Linear Unbiased Predictor: 142s #Vector: dim: 2 142s c( 0.500000, 4.500000) 142s # MSPE ([a]-[b]+[c]): 142s #Matrix: 2 by 2 142s rbind( 142s c( 1.081434, 0.305494), # row 1 142s c( 0.305494, 1.081434) # row 2 142s ) 142s 142s # kriging weights: 142s #Matrix: 4 by 2 142s rbind( 142s c( 0.500000, 0.000000), # row 1 142s c( 0.500000, 0.000000), # row 2 142s c( 0.000000, 0.500000), # row 3 142s c( 0.000000, 0.500000) # row 4 142s ) 142s 142s 142s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 142s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 142s > 142s BEGIN TEST na.action.R 142s 142s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 142s Copyright (C) 2024 The R Foundation for Statistical Computing 142s Platform: aarch64-unknown-linux-gnu 142s 142s R is free software and comes with ABSOLUTELY NO WARRANTY. 142s You are welcome to redistribute it under certain conditions. 142s Type 'license()' or 'licence()' for distribution details. 142s 142s R is a collaborative project with many contributors. 142s Type 'contributors()' for more information and 142s 'citation()' on how to cite R or R packages in publications. 142s 142s Type 'demo()' for some demos, 'help()' for on-line help, or 142s 'help.start()' for an HTML browser interface to help. 142s Type 'q()' to quit R. 142s 142s > library(sp) 142s > 142s > data(meuse) 142s > data(meuse.grid) 142s > 142s > set.seed(13131) # reproduce results 142s > 142s > # select 10 random rows; 142s > # create two missing values in the coordinates: 142s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 142s > m[c(2,8), "x"] = NA 142s > 142s > library(gstat) 143s > ## this is not allowed anymore: 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 143s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 143s missing values in object 143s > 143s > # select 10 random rows; 143s > # create two missing values in the regressor variable: 143s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 143s > m[c(3,7), "dist"] = NA 143s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 143s [ordinary or weighted least squares prediction] 143s x y var1.pred var1.var 143s 1 178860 330860 6.530134 0.2415196 143s 2 180260 331860 5.389567 0.2406041 143s 3 180100 331860 NA NA 143s 4 180460 331820 5.213370 0.2417197 143s 5 179660 330580 5.550859 0.2398778 143s 6 179740 330300 6.108648 0.2395392 143s 7 180220 330660 NA NA 143s 8 178580 329820 6.533801 0.2415453 143s 9 180100 331900 5.580264 0.2397758 143s 10 180780 331900 5.095967 0.2426499 143s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 143s [ordinary or weighted least squares prediction] 143s x y var1.pred var1.var 143s 1877 178860 330860 6.530134 0.2415196 143s 1015 180260 331860 5.389567 0.2406041 143s 1056 180460 331820 5.213370 0.2417197 143s 2199 179660 330580 5.550859 0.2398778 143s 2556 179740 330300 6.108648 0.2395392 143s 2985 178580 329820 6.533801 0.2415453 143s 975 180100 331900 5.580264 0.2397758 143s 992 180780 331900 5.095967 0.2426499 143s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 143s [ordinary or weighted least squares prediction] 143s x y var1.pred var1.var 143s 1877 178860 330860 6.530134 0.2415196 143s 1015 180260 331860 5.389567 0.2406041 143s 1056 180460 331820 5.213370 0.2417197 143s 2199 179660 330580 5.550859 0.2398778 143s 2556 179740 330300 6.108648 0.2395392 143s 2985 178580 329820 6.533801 0.2415453 143s 975 180100 331900 5.580264 0.2397758 143s 992 180780 331900 5.095967 0.2426499 143s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 143s > 143s BEGIN TEST rings.R 143s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 143s missing values in object 143s 143s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 143s Copyright (C) 2024 The R Foundation for Statistical Computing 143s Platform: aarch64-unknown-linux-gnu 143s 143s R is free software and comes with ABSOLUTELY NO WARRANTY. 143s You are welcome to redistribute it under certain conditions. 143s Type 'license()' or 'licence()' for distribution details. 143s 143s R is a collaborative project with many contributors. 143s Type 'contributors()' for more information and 143s 'citation()' on how to cite R or R packages in publications. 143s 143s Type 'demo()' for some demos, 'help()' for on-line help, or 143s 'help.start()' for an HTML browser interface to help. 143s Type 'q()' to quit R. 143s 143s > library(sp) 143s > library(gstat) 144s > set.seed(13331) 144s > 144s > x = runif(10) 144s > y = runif(10) 144s > z = rnorm(10) 144s > d = data.frame(x=x,y=y,z=z) 144s > bl = c(1,1) 144s > 144s > nd = data.frame(x=.5, y=.5) 144s > 144s > # single block: 144s > library(sp) 144s > coordinates(d) = ~x+y 144s > nd = SpatialPoints(nd) 144s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 144s + set = list(nb=4)) 145s [using ordinary kriging] 145s > 145s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 145s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 145s > a = data.frame(a = 1, b = 2) 145s > rownames(a) = "xx" 145s > r1df = SpatialPolygonsDataFrame(r1, a) 145s > 145s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 145s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 145s > yy = predict(g, r1df, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > print(all.equal(xx,yy)) 145s [1] TRUE 145s > 145s > ## multiple blocks of equal size: 145s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 145s > nd = SpatialPoints(nd) 145s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 145s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 145s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 145s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 145s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 145s > r1 = SpatialPolygons(list( 145s + Polygons(list(Polygon(ring0)), ID = "x0"), 145s + Polygons(list(Polygon(ring1)), ID = "x1"), 145s + Polygons(list(Polygon(ring2)), ID = "x2"), 145s + Polygons(list(Polygon(ring3)), ID = "x3"), 145s + Polygons(list(Polygon(ring4)), ID = "x4") 145s + )) 145s > df = data.frame(a=rep(1,5), b= rep(1,5)) 145s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 145s > r1df = SpatialPolygonsDataFrame(r1, df) 145s > 145s > yy = predict(g, r1, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > all.equal(xx, yy) 145s [1] TRUE 145s > 145s > ## multiple blocks of equal size: 145s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 145s > yy = predict(g, r1, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > print(all.equal(xx, yy)) 145s [1] TRUE 145s > 145s > ## multiple blocks of varying size: 145s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 145s > nd = SpatialPoints(nd) 145s > bl = c(1,1) 145s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 145s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > bl = c(2,2) 145s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 145s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > bl = c(3,3) 145s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 145s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 145s + set = list(nb=4)) 145s [using ordinary kriging] 145s > r1 = SpatialPolygons(list( 145s + Polygons(list(Polygon(ring0)), ID = "x0"), 145s + Polygons(list(Polygon(ring1)), ID = "x1"), 145s + Polygons(list(Polygon(ring2)), ID = "x2") 145s + )) 145s > df = data.frame(a = rep(1,3), b = rep(1,3)) 145s > rownames(df) = c("x0", "x1", "x2") 145s > r1df = SpatialPolygonsDataFrame(r1, df) 145s > 145s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 145s > yy = predict(g, r1df, block = bl, sps.args = args) 145s [using ordinary kriging] 145s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 145s > row.names(xx) = 1:3 145s > xx = as.data.frame(xx) 145s > yy = as.data.frame(yy) 145s > row.names(xx) = row.names(yy) 145s > print(all.equal(xx, yy)) 145s [1] TRUE 145s > 145s BEGIN TEST sim.R 145s 145s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 145s Copyright (C) 2024 The R Foundation for Statistical Computing 145s Platform: aarch64-unknown-linux-gnu 145s 145s R is free software and comes with ABSOLUTELY NO WARRANTY. 145s You are welcome to redistribute it under certain conditions. 145s Type 'license()' or 'licence()' for distribution details. 145s 145s R is a collaborative project with many contributors. 145s Type 'contributors()' for more information and 145s 'citation()' on how to cite R or R packages in publications. 145s 145s Type 'demo()' for some demos, 'help()' for on-line help, or 145s 'help.start()' for an HTML browser interface to help. 145s Type 'q()' to quit R. 145s 145s > options(digits=6) 145s > library(sp) 146s > data(meuse) 146s > set.seed(158229572) 146s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 146s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 146s > library(gstat) 146s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 146s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 146s + block = c(40,40), nmax = 40, nsim = 10) 147s drawing 10 GLS realisations of beta... 147s [using conditional Gaussian simulation] 147s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 147s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 147s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 147s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 147s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 147s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 147s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 147s sim8 sim9 sim10 147s 1 294.107 113.347 279.991 147s 2 776.498 724.160 901.692 147s 3 338.021 630.244 140.272 147s 4 127.301 957.242 444.007 147s 5 533.773 748.144 623.960 147s 6 1084.170 537.604 -214.972 147s > 147s BEGIN TEST stars.R 147s 147s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 147s Copyright (C) 2024 The R Foundation for Statistical Computing 147s Platform: aarch64-unknown-linux-gnu 147s 147s R is free software and comes with ABSOLUTELY NO WARRANTY. 147s You are welcome to redistribute it under certain conditions. 147s Type 'license()' or 'licence()' for distribution details. 147s 147s R is a collaborative project with many contributors. 147s Type 'contributors()' for more information and 147s 'citation()' on how to cite R or R packages in publications. 147s 147s Type 'demo()' for some demos, 'help()' for on-line help, or 147s 'help.start()' for an HTML browser interface to help. 147s Type 'q()' to quit R. 147s 147s > Sys.setenv(TZ = "UTC") 147s > 147s > # 0. using sp: 147s > 147s > suppressPackageStartupMessages(library(sp)) 147s > demo(meuse, ask = FALSE) 147s 147s 147s demo(meuse) 147s ---- ~~~~~ 147s 147s > require(sp) 147s 147s > crs = CRS("EPSG:28992") 148s 148s > data("meuse") 148s 148s > coordinates(meuse) <- ~x+y 148s 148s > proj4string(meuse) <- crs 148s 148s > data("meuse.grid") 148s 148s > coordinates(meuse.grid) <- ~x+y 148s 148s > gridded(meuse.grid) <- TRUE 148s 148s > proj4string(meuse.grid) <- crs 148s 148s > data("meuse.riv") 148s 148s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 148s 148s > proj4string(meuse.riv) <- crs 148s 148s > data("meuse.area") 148s 148s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 148s 148s > proj4string(meuse.area) <- crs 148s > suppressPackageStartupMessages(library(gstat)) 148s > v = variogram(log(zinc)~1, meuse) 148s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 148s model psill range 148s 1 Nug 0.05066243 0.0000 148s 2 Sph 0.59060780 897.0209 148s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 149s [using ordinary kriging] 149s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 149s [using ordinary kriging] 149s > 149s > # 1. using sf: 149s > suppressPackageStartupMessages(library(sf)) 149s > demo(meuse_sf, ask = FALSE, echo = FALSE) 149s > # reloads meuse as data.frame, so 149s > demo(meuse, ask = FALSE) 149s 149s 149s demo(meuse) 149s ---- ~~~~~ 149s 149s > require(sp) 149s 149s > crs = CRS("EPSG:28992") 149s 149s > data("meuse") 149s 149s > coordinates(meuse) <- ~x+y 149s 149s > proj4string(meuse) <- crs 149s 149s > data("meuse.grid") 149s 149s > coordinates(meuse.grid) <- ~x+y 149s 149s > gridded(meuse.grid) <- TRUE 149s 149s > proj4string(meuse.grid) <- crs 149s 149s > data("meuse.riv") 149s 149s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 149s 149s > proj4string(meuse.riv) <- crs 149s 149s > data("meuse.area") 149s 149s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 149s 149s > proj4string(meuse.area) <- crs 149s > 149s > v = variogram(log(zinc)~1, meuse_sf) 149s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 149s model psill range 149s 1 Nug 0.05066243 0.0000 149s 2 Sph 0.59060780 897.0209 149s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 149s [using ordinary kriging] 149s > 149s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 149s [1] TRUE 149s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 149s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 149s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 149s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 149s > 149s > # 2. using stars for grid: 149s > 149s > suppressPackageStartupMessages(library(stars)) 149s > st = st_as_stars(meuse.grid) 149s > st_crs(st) 149s Coordinate Reference System: 149s User input: Amersfoort / RD New 149s wkt: 149s PROJCRS["Amersfoort / RD New", 149s BASEGEOGCRS["Amersfoort", 149s DATUM["Amersfoort", 149s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 149s LENGTHUNIT["metre",1]]], 149s PRIMEM["Greenwich",0, 149s ANGLEUNIT["degree",0.0174532925199433]], 149s ID["EPSG",4289]], 149s CONVERSION["RD New", 149s METHOD["Oblique Stereographic", 149s ID["EPSG",9809]], 149s PARAMETER["Latitude of natural origin",52.1561605555556, 149s ANGLEUNIT["degree",0.0174532925199433], 149s ID["EPSG",8801]], 149s PARAMETER["Longitude of natural origin",5.38763888888889, 149s ANGLEUNIT["degree",0.0174532925199433], 149s ID["EPSG",8802]], 149s PARAMETER["Scale factor at natural origin",0.9999079, 149s SCALEUNIT["unity",1], 149s ID["EPSG",8805]], 149s PARAMETER["False easting",155000, 149s LENGTHUNIT["metre",1], 149s ID["EPSG",8806]], 149s PARAMETER["False northing",463000, 149s LENGTHUNIT["metre",1], 149s ID["EPSG",8807]]], 149s CS[Cartesian,2], 149s AXIS["easting (X)",east, 149s ORDER[1], 149s LENGTHUNIT["metre",1]], 149s AXIS["northing (Y)",north, 149s ORDER[2], 149s LENGTHUNIT["metre",1]], 149s USAGE[ 149s SCOPE["Engineering survey, topographic mapping."], 149s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 149s BBOX[50.75,3.2,53.7,7.22]], 149s ID["EPSG",28992]] 149s > 149s > # compare inputs: 149s > sp = as(st, "Spatial") 149s > fullgrid(meuse.grid) = TRUE 149s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 149s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 149s [2] "Names: 1 string mismatch" 149s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 149s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 149s [2] "Names: 1 string mismatch" 149s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 149s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 149s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 149s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 149s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 149s > 149s > # kriging: 149s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 149s > k_st = if (Sys.getenv("USER") == "travis") { 149s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 149s + } else { 149s + krige(log(zinc)~1, meuse_sf, st, v.fit) 149s + } 150s [using ordinary kriging] 150s > k_st 150s stars object with 2 dimensions and 2 attributes 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 150s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 150s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 150s dimension(s): 150s from to offset delta x/y 150s x 1 78 178440 40 [x] 150s y 1 104 333760 -40 [y] 150s > 150s > # handle factors, when going to stars? 150s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 150s > st_as_stars(k_sp_grd) 150s stars object with 2 dimensions and 3 attributes 150s attribute(s): 150s var1.pred var1.var cls 150s Min. :4.777 Min. :0.085 (0,5]: 316 150s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 150s Median :5.573 Median :0.162 (6,7]: 962 150s Mean :5.707 Mean :0.185 (7,8]: 47 150s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 150s Max. :7.440 Max. :0.500 NA's :5009 150s NA's :5009 NA's :5009 150s dimension(s): 150s from to offset delta refsys x/y 150s x 1 78 178440 40 Amersfoort / RD New [x] 150s y 1 104 333760 -40 Amersfoort / RD New [y] 150s > if (require(raster, quietly = TRUE)) { 150s + print(st_as_stars(raster::stack(k_sp_grd))) # check 150s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 150s + } 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 156s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 156s dimension(s): 156s from to offset delta refsys values 156s x 1 78 178440 40 Amersfoort / RD New NULL 156s y 1 104 333760 -40 Amersfoort / RD New NULL 156s band 1 3 NA NA NA var1.pred, var1.var , cls 156s x/y 156s x [x] 156s y [y] 156s band 156s [1] TRUE 156s > 156s > suppressPackageStartupMessages(library(spacetime)) 156s > 156s > Sys.setenv(TZ="") 156s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 156s > n = 4 156s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 156s + stars:::create_dimensions(list( 156s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 156s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 156s + time = stars:::create_dimension(values = tm + 1:n)), 156s + raster = stars:::get_raster(dimensions = c("x", "y"))) 156s + ) 156s > s 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s foo 1 16.75 32.5 32.5 48.25 64 156s dimension(s): 156s from to offset delta refsys x/y 156s x 1 4 10 0.5 NA [x] 156s y 1 4 0 -0.7 NA [y] 156s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 156s > 156s > as.data.frame(s) 156s x y time foo 156s 1 10.25 -0.35 2019-02-25 15:37:25 1 156s 2 10.75 -0.35 2019-02-25 15:37:25 2 156s 3 11.25 -0.35 2019-02-25 15:37:25 3 156s 4 11.75 -0.35 2019-02-25 15:37:25 4 156s 5 10.25 -1.05 2019-02-25 15:37:25 5 156s 6 10.75 -1.05 2019-02-25 15:37:25 6 156s 7 11.25 -1.05 2019-02-25 15:37:25 7 156s 8 11.75 -1.05 2019-02-25 15:37:25 8 156s 9 10.25 -1.75 2019-02-25 15:37:25 9 156s 10 10.75 -1.75 2019-02-25 15:37:25 10 156s 11 11.25 -1.75 2019-02-25 15:37:25 11 156s 12 11.75 -1.75 2019-02-25 15:37:25 12 156s 13 10.25 -2.45 2019-02-25 15:37:25 13 156s 14 10.75 -2.45 2019-02-25 15:37:25 14 156s 15 11.25 -2.45 2019-02-25 15:37:25 15 156s 16 11.75 -2.45 2019-02-25 15:37:25 16 156s 17 10.25 -0.35 2019-02-25 15:37:26 17 156s 18 10.75 -0.35 2019-02-25 15:37:26 18 156s 19 11.25 -0.35 2019-02-25 15:37:26 19 156s 20 11.75 -0.35 2019-02-25 15:37:26 20 156s 21 10.25 -1.05 2019-02-25 15:37:26 21 156s 22 10.75 -1.05 2019-02-25 15:37:26 22 156s 23 11.25 -1.05 2019-02-25 15:37:26 23 156s 24 11.75 -1.05 2019-02-25 15:37:26 24 156s 25 10.25 -1.75 2019-02-25 15:37:26 25 156s 26 10.75 -1.75 2019-02-25 15:37:26 26 156s 27 11.25 -1.75 2019-02-25 15:37:26 27 156s 28 11.75 -1.75 2019-02-25 15:37:26 28 156s 29 10.25 -2.45 2019-02-25 15:37:26 29 156s 30 10.75 -2.45 2019-02-25 15:37:26 30 156s 31 11.25 -2.45 2019-02-25 15:37:26 31 156s 32 11.75 -2.45 2019-02-25 15:37:26 32 156s 33 10.25 -0.35 2019-02-25 15:37:27 33 156s 34 10.75 -0.35 2019-02-25 15:37:27 34 156s 35 11.25 -0.35 2019-02-25 15:37:27 35 156s 36 11.75 -0.35 2019-02-25 15:37:27 36 156s 37 10.25 -1.05 2019-02-25 15:37:27 37 156s 38 10.75 -1.05 2019-02-25 15:37:27 38 156s 39 11.25 -1.05 2019-02-25 15:37:27 39 156s 40 11.75 -1.05 2019-02-25 15:37:27 40 156s 41 10.25 -1.75 2019-02-25 15:37:27 41 156s 42 10.75 -1.75 2019-02-25 15:37:27 42 156s 43 11.25 -1.75 2019-02-25 15:37:27 43 156s 44 11.75 -1.75 2019-02-25 15:37:27 44 156s 45 10.25 -2.45 2019-02-25 15:37:27 45 156s 46 10.75 -2.45 2019-02-25 15:37:27 46 156s 47 11.25 -2.45 2019-02-25 15:37:27 47 156s 48 11.75 -2.45 2019-02-25 15:37:27 48 156s 49 10.25 -0.35 2019-02-25 15:37:28 49 156s 50 10.75 -0.35 2019-02-25 15:37:28 50 156s 51 11.25 -0.35 2019-02-25 15:37:28 51 156s 52 11.75 -0.35 2019-02-25 15:37:28 52 156s 53 10.25 -1.05 2019-02-25 15:37:28 53 156s 54 10.75 -1.05 2019-02-25 15:37:28 54 156s 55 11.25 -1.05 2019-02-25 15:37:28 55 156s 56 11.75 -1.05 2019-02-25 15:37:28 56 156s 57 10.25 -1.75 2019-02-25 15:37:28 57 156s 58 10.75 -1.75 2019-02-25 15:37:28 58 156s 59 11.25 -1.75 2019-02-25 15:37:28 59 156s 60 11.75 -1.75 2019-02-25 15:37:28 60 156s 61 10.25 -2.45 2019-02-25 15:37:28 61 156s 62 10.75 -2.45 2019-02-25 15:37:28 62 156s 63 11.25 -2.45 2019-02-25 15:37:28 63 156s 64 11.75 -2.45 2019-02-25 15:37:28 64 156s > plot(s, col = sf.colors(), axes = TRUE) 156s > (s.stfdf = as(s, "STFDF")) 156s An object of class "STFDF" 156s Slot "data": 156s foo 156s 1 1 156s 2 2 156s 3 3 156s 4 4 156s 5 5 156s 6 6 156s 7 7 156s 8 8 156s 9 9 156s 10 10 156s 11 11 156s 12 12 156s 13 13 156s 14 14 156s 15 15 156s 16 16 156s 17 17 156s 18 18 156s 19 19 156s 20 20 156s 21 21 156s 22 22 156s 23 23 156s 24 24 156s 25 25 156s 26 26 156s 27 27 156s 28 28 156s 29 29 156s 30 30 156s 31 31 156s 32 32 156s 33 33 156s 34 34 156s 35 35 156s 36 36 156s 37 37 156s 38 38 156s 39 39 156s 40 40 156s 41 41 156s 42 42 156s 43 43 156s 44 44 156s 45 45 156s 46 46 156s 47 47 156s 48 48 156s 49 49 156s 50 50 156s 51 51 156s 52 52 156s 53 53 156s 54 54 156s 55 55 156s 56 56 156s 57 57 156s 58 58 156s 59 59 156s 60 60 156s 61 61 156s 62 62 156s 63 63 156s 64 64 156s 156s Slot "sp": 156s Object of class SpatialPixels 156s Grid topology: 156s cellcentre.offset cellsize cells.dim 156s x 10.25 0.5 4 156s y -2.45 0.7 4 156s SpatialPoints: 156s x y 156s [1,] 10.25 -0.35 156s [2,] 10.75 -0.35 156s [3,] 11.25 -0.35 156s [4,] 11.75 -0.35 156s [5,] 10.25 -1.05 156s [6,] 10.75 -1.05 156s [7,] 11.25 -1.05 156s [8,] 11.75 -1.05 156s [9,] 10.25 -1.75 156s [10,] 10.75 -1.75 156s [11,] 11.25 -1.75 156s [12,] 11.75 -1.75 156s [13,] 10.25 -2.45 156s [14,] 10.75 -2.45 156s [15,] 11.25 -2.45 156s [16,] 11.75 -2.45 156s Coordinate Reference System (CRS) arguments: NA 156s 156s Slot "time": 156s timeIndex 156s 2019-02-25 15:37:25 1 156s 2019-02-25 15:37:26 2 156s 2019-02-25 15:37:27 3 156s 2019-02-25 15:37:28 4 156s 156s Slot "endTime": 156s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 156s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 156s 156s > stplot(s.stfdf, scales = list(draw = TRUE)) 156s > 156s > (s2 = st_as_stars(s.stfdf)) 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s foo 1 16.75 32.5 32.5 48.25 64 157s dimension(s): 157s from to offset delta refsys x/y 157s x 1 4 10 0.5 NA [x] 157s y 1 4 -1.11e-16 -0.7 NA [y] 157s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 157s > plot(s2, col = sf.colors(), axes = TRUE) 157s > all.equal(s, s2, check.attributes = FALSE) 157s [1] TRUE 157s > 157s > # multiple simulations: 157s > data(meuse, package = "sp") 157s > data(meuse.grid, package = "sp") 157s > coordinates(meuse.grid) <- ~x+y 157s > gridded(meuse.grid) <- TRUE 157s > meuse.grid = st_as_stars(meuse.grid) 157s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 157s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 157s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 157s > set.seed(123) 157s > (p = predict(g, meuse.grid, nsim = 5)) 157s drawing 5 multivariate GLS realisations of beta... 157s [using conditional Gaussian simulation] 157s stars object with 3 dimensions and 2 attributes 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 157s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 157s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 157s dimension(s): 157s from to offset delta values x/y 157s x 1 78 178440 40 NULL [x] 157s y 1 104 333760 -40 NULL [y] 157s sample 1 5 NA NA sim1,...,sim5 157s > 157s BEGIN TEST unproj.R 157s 157s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 157s Copyright (C) 2024 The R Foundation for Statistical Computing 157s Platform: aarch64-unknown-linux-gnu 157s 157s R is free software and comes with ABSOLUTELY NO WARRANTY. 157s You are welcome to redistribute it under certain conditions. 157s Type 'license()' or 'licence()' for distribution details. 157s 157s R is a collaborative project with many contributors. 157s Type 'contributors()' for more information and 157s 'citation()' on how to cite R or R packages in publications. 157s 157s Type 'demo()' for some demos, 'help()' for on-line help, or 157s 'help.start()' for an HTML browser interface to help. 157s Type 'q()' to quit R. 157s 157s > # DOI 10.1007/s11004-011-9344-7 157s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 157s > 157s > suppressPackageStartupMessages(library(sp)) 158s > library(gstat) 158s > 158s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 158s + data(meuse) 158s + coordinates(meuse) = ~x+y 158s + proj4string(meuse) = CRS("+init=epsg:28992") 158s + ll = "+proj=longlat +ellps=WGS84" 158s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 158s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 158s + meuse.ll[1:10,] 158s + variogram(log(zinc)~1, meuse.ll) 158s + 158s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 158s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 158s + 158s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 158s + abline(0,1) 158s + 158s + data(ozone2) 158s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 158s + data.frame(t(ozone2$y)), 158s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 158s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 158s + utm16 = "+proj=utm +zone=16" 158s + # oz.utm = spTransform(oz, utm16) 158s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 158s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 158s + 158s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 158s + 158s + foo <- 158s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 158s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 158s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 158s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 158s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 158s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 158s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 158s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 158s + -11L), class = "data.frame") 158s + 158s + coordinates(foo) <- ~lon+lat 158s + 158s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 158s + 158s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 158s + 158s + cat('==========\nvariogram:\n') 158s + print(head(vg.foo)) 158s + 158s + cat('==========\nspDistsN1 Distances:\n') 158s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 158s + } 159s Spam version 2.10-0 (2023-10-23) is loaded. 159s Type 'help( Spam)' or 'demo( spam)' for a short introduction 159s and overview of this package. 159s Help for individual functions is also obtained by adding the 159s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 159s 159s Attaching package: ‘spam’ 159s 159s The following objects are masked from ‘package:base’: 159s 159s backsolve, forwardsolve 159s 159s 159s Try help(fields) to get started. 159s Linking to GEOS 3.12.2, GDAL 3.9.1, PROJ 9.4.0; sf_use_s2() is TRUE 159s WARNING: different compile-time and runtime versions for GEOS found: 159s Linked against: 3.12.2-CAPI-1.18.2 compiled against: 3.12.1-CAPI-1.18.1 159s It is probably a good idea to reinstall sf (and maybe lwgeom too) 160s ========== 160s variogram: 160s Warning message: 160s In CPL_crs_from_input(x) : 160s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 160s dist gamma dir.hor dir.ver id left right 160s 1 3115.1190 8.971063e-04 0 0 var1 2 1 160s 2 1908.0468 1.909846e+01 0 0 var1 3 1 160s 3 1405.6211 1.883757e+01 0 0 var1 3 2 160s 4 1837.5667 1.347749e+01 0 0 var1 4 1 160s 5 1522.8765 1.325847e+01 0 0 var1 4 2 160s 6 119.9386 4.886139e-01 0 0 var1 4 3 160s ========== 160s spDistsN1 Distances: 160s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 160s [8] 3081.7541 4090.4022 665.9348 2683.1516 160s > 160s BEGIN TEST variogram.R 160s 160s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 160s Copyright (C) 2024 The R Foundation for Statistical Computing 160s Platform: aarch64-unknown-linux-gnu 160s 160s R is free software and comes with ABSOLUTELY NO WARRANTY. 160s You are welcome to redistribute it under certain conditions. 160s Type 'license()' or 'licence()' for distribution details. 160s 160s R is a collaborative project with many contributors. 160s Type 'contributors()' for more information and 160s 'citation()' on how to cite R or R packages in publications. 160s 160s Type 'demo()' for some demos, 'help()' for on-line help, or 160s 'help.start()' for an HTML browser interface to help. 160s Type 'q()' to quit R. 160s 160s > library(sp) 160s > library(gstat) 161s > data(meuse) 161s > variogram(log(zinc)~1, ~x+y, meuse) 161s np dist gamma dir.hor dir.ver id 161s 1 57 79.29244 0.1234479 0 0 var1 161s 2 299 163.97367 0.2162185 0 0 var1 161s 3 419 267.36483 0.3027859 0 0 var1 161s 4 457 372.73542 0.4121448 0 0 var1 161s 5 547 478.47670 0.4634128 0 0 var1 161s 6 533 585.34058 0.5646933 0 0 var1 161s 7 574 693.14526 0.5689683 0 0 var1 161s 8 564 796.18365 0.6186769 0 0 var1 161s 9 589 903.14650 0.6471479 0 0 var1 161s 10 543 1011.29177 0.6915705 0 0 var1 161s 11 500 1117.86235 0.7033984 0 0 var1 161s 12 477 1221.32810 0.6038770 0 0 var1 161s 13 452 1329.16407 0.6517158 0 0 var1 161s 14 457 1437.25620 0.5665318 0 0 var1 161s 15 415 1543.20248 0.5748227 0 0 var1 161s > 161s > coordinates(meuse) <- ~ x + y 161s > variogram(log(zinc)~1, meuse) 161s np dist gamma dir.hor dir.ver id 161s 1 57 79.29244 0.1234479 0 0 var1 161s 2 299 163.97367 0.2162185 0 0 var1 161s 3 419 267.36483 0.3027859 0 0 var1 161s 4 457 372.73542 0.4121448 0 0 var1 161s 5 547 478.47670 0.4634128 0 0 var1 161s 6 533 585.34058 0.5646933 0 0 var1 161s 7 574 693.14526 0.5689683 0 0 var1 161s 8 564 796.18365 0.6186769 0 0 var1 161s 9 589 903.14650 0.6471479 0 0 var1 161s 10 543 1011.29177 0.6915705 0 0 var1 161s 11 500 1117.86235 0.7033984 0 0 var1 161s 12 477 1221.32810 0.6038770 0 0 var1 161s 13 452 1329.16407 0.6517158 0 0 var1 161s 14 457 1437.25620 0.5665318 0 0 var1 161s 15 415 1543.20248 0.5748227 0 0 var1 161s > 161s > ind=seq(1,155,2) 161s > var1= meuse[ind,] 161s > var2= meuse[-ind,] 161s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 161s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 161s > v.cross <- variogram(g) 161s > plot(v.cross) 162s > 162s > 162s BEGIN TEST vdist.R 162s 162s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 162s Copyright (C) 2024 The R Foundation for Statistical Computing 162s Platform: aarch64-unknown-linux-gnu 162s 162s R is free software and comes with ABSOLUTELY NO WARRANTY. 162s You are welcome to redistribute it under certain conditions. 162s Type 'license()' or 'licence()' for distribution details. 162s 162s R is a collaborative project with many contributors. 162s Type 'contributors()' for more information and 162s 'citation()' on how to cite R or R packages in publications. 162s 162s Type 'demo()' for some demos, 'help()' for on-line help, or 162s 'help.start()' for an HTML browser interface to help. 162s Type 'q()' to quit R. 162s 162s > library(sp) 162s > library(gstat) 163s > 163s > data(meuse) 163s > coordinates(meuse) = ~x+y 163s > data(meuse.grid) 163s > gridded(meuse.grid) = ~x+y 163s > 163s > mg = meuse.grid 163s > gridded(mg) = FALSE 163s > mg= mg[1500,] 163s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 163s + vdist=FALSE, maxdist=1000,nmax=10) 163s [using ordinary kriging] 163s coordinates var1.pred var1.var 163s 1500 (180260, 331300) 5.007376 1.102622 163s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 163s + vdist=TRUE, maxdist=1000,nmax=10) 163s [using ordinary kriging] 163s coordinates var1.pred var1.var 163s 1500 (180260, 331300) 5.50671 1.100095 163s > 163s autopkgtest [18:44:48]: test run-unit-test: -----------------------] 164s autopkgtest [18:44:49]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 164s run-unit-test PASS 165s autopkgtest [18:44:50]: test pkg-r-autopkgtest: preparing testbed 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 168s The following additional packages will be installed: 168s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 168s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 168s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 168s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 168s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 168s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 168s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 168s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 168s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 168s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 168s r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 168s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 168s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 168s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 168s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr zlib1g-dev 168s Suggested packages: 168s cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib 168s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 168s gdb-aarch64-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev 168s liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-14-doc 168s texlive-base texlive-latex-base texlive-plain-generic 168s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 168s texlive-latex-recommended texlive-latex-extra texinfo r-cran-knitr 168s r-cran-rmarkdown r-cran-doparallel r-cran-foreach r-cran-parallelmap 168s r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi gridengine-client 168s slurm-client r-cran-lubridate r-cran-covr r-cran-testthat r-cran-roxygen2 168s Recommended packages: 168s bzip2-doc libpng-tools r-cran-testthat r-cran-base64enc r-cran-openssl 168s r-cran-ranger r-cran-fastmatch r-cran-devtools r-cran-ggplot2 r-cran-knitr 168s r-cran-rmarkdown r-cran-tinytest r-cran-tibble r-cran-callr r-cran-covr 168s r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps 168s r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bit64 r-cran-bit 168s r-cran-r.utils r-cran-yaml r-cran-markdown r-cran-pillar r-cran-spelling 168s r-cran-r.rsp r-cran-dplyr r-cran-rsqlite r-cran-waldo r-cran-lintr 168s r-cran-tidyverse r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot 169s The following NEW packages will be installed: 169s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu 169s cpp-aarch64-linux-gnu dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu 169s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 169s gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu 169s gfortran-aarch64-linux-gnu icu-devtools libasan8 libblas-dev libbz2-dev 169s libcc1-0 libdeflate-dev libgcc-14-dev libgfortran-14-dev libhwasan0 169s libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 169s liblapack-dev liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 169s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 169s libreadline-dev libstdc++-14-dev libtirpc-dev libtsan2 libubsan1 169s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 169s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate r-cran-cli 169s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 169s r-cran-glue r-cran-hms r-cran-lifecycle r-cran-pkgconfig r-cran-prettyunits 169s r-cran-progress r-cran-r6 r-cran-rappdirs r-cran-stringi r-cran-vctrs 169s r-cran-withr zlib1g-dev 169s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 101 MB/101 MB of archives. 169s After this operation, 346 MB of additional disk space will be used. 169s Get:1 /tmp/autopkgtest.AoI4PP/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B] 169s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 169s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 169s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [10.6 MB] 170s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-7ubuntu1 [1030 B] 170s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 170s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 170s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-7ubuntu1 [49.7 kB] 170s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-7ubuntu1 [27.8 kB] 170s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-7ubuntu1 [2893 kB] 170s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-7ubuntu1 [1283 kB] 170s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-7ubuntu1 [2691 kB] 170s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-7ubuntu1 [1151 kB] 170s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-7ubuntu1 [1599 kB] 170s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-7ubuntu1 [2594 kB] 170s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [20.9 MB] 170s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-7ubuntu1 [515 kB] 170s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 170s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 170s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-7ubuntu1 [2474 kB] 170s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [12.1 MB] 171s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-7ubuntu1 [19.8 kB] 171s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 171s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 171s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 171s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 171s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-7ubuntu1 [498 kB] 171s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [11.4 MB] 171s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-7ubuntu1 [11.6 kB] 171s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B] 171s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B] 171s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 74.2-1ubuntu4 [210 kB] 171s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-3build2 [120 kB] 171s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 171s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.21-1 [53.8 kB] 171s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 74.2-1ubuntu4 [11.9 MB] 171s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 171s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 171s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 171s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-3build2 [4419 kB] 172s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB] 172s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 172s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB] 172s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B] 172s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB] 172s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-3ubuntu1 [31.5 kB] 172s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 172s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-1 [268 kB] 172s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-5 [179 kB] 172s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB] 172s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-3ubuntu1 [20.9 kB] 172s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-3ubuntu1 [16.8 kB] 172s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 172s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.1-1 [4338 B] 172s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 172s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-backports arm64 1.5.0-2 [121 kB] 172s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64url arm64 1.4-2build1 [26.4 kB] 172s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 172s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 172s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-data.table arm64 1.15.4+dfsg-2.2 [1858 kB] 172s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.4+dfsg-1 [244 kB] 172s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 172s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 172s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 172s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 172s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 172s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 172s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 172s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 172s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 172s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 172s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 172s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 172s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 172s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-batchtools arm64 0.9.17+dfsg-1 [712 kB] 172s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 173s Fetched 101 MB in 4s (28.4 MB/s) 173s Selecting previously unselected package libisl23:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86254 files and directories currently installed.) 173s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 173s Unpacking libisl23:arm64 (0.27-1) ... 173s Selecting previously unselected package libmpc3:arm64. 173s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 173s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 173s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 173s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 173s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 173s Selecting previously unselected package cpp-14. 173s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_arm64.deb ... 173s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package cpp-aarch64-linux-gnu. 174s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 174s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 174s Selecting previously unselected package cpp. 174s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 174s Unpacking cpp (4:14.1.0-2ubuntu1) ... 174s Selecting previously unselected package libcc1-0:arm64. 174s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libcc1-0:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package libitm1:arm64. 174s Preparing to unpack .../07-libitm1_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libitm1:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package libasan8:arm64. 174s Preparing to unpack .../08-libasan8_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libasan8:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package liblsan0:arm64. 174s Preparing to unpack .../09-liblsan0_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking liblsan0:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package libtsan2:arm64. 174s Preparing to unpack .../10-libtsan2_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libtsan2:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package libubsan1:arm64. 174s Preparing to unpack .../11-libubsan1_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libubsan1:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package libhwasan0:arm64. 174s Preparing to unpack .../12-libhwasan0_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libhwasan0:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package libgcc-14-dev:arm64. 174s Preparing to unpack .../13-libgcc-14-dev_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 174s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 174s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 174s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 175s Selecting previously unselected package gcc-14. 175s Preparing to unpack .../15-gcc-14_14.2.0-7ubuntu1_arm64.deb ... 175s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 175s Selecting previously unselected package gcc-aarch64-linux-gnu. 175s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 175s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 175s Selecting previously unselected package gcc. 175s Preparing to unpack .../17-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 175s Unpacking gcc (4:14.1.0-2ubuntu1) ... 175s Selecting previously unselected package libstdc++-14-dev:arm64. 175s Preparing to unpack .../18-libstdc++-14-dev_14.2.0-7ubuntu1_arm64.deb ... 175s Unpacking libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 175s Selecting previously unselected package g++-14-aarch64-linux-gnu. 175s Preparing to unpack .../19-g++-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 175s Unpacking g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 175s Selecting previously unselected package g++-14. 175s Preparing to unpack .../20-g++-14_14.2.0-7ubuntu1_arm64.deb ... 175s Unpacking g++-14 (14.2.0-7ubuntu1) ... 176s Selecting previously unselected package g++-aarch64-linux-gnu. 176s Preparing to unpack .../21-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 176s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 176s Selecting previously unselected package g++. 176s Preparing to unpack .../22-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 176s Unpacking g++ (4:14.1.0-2ubuntu1) ... 176s Selecting previously unselected package build-essential. 176s Preparing to unpack .../23-build-essential_12.10ubuntu1_arm64.deb ... 176s Unpacking build-essential (12.10ubuntu1) ... 176s Selecting previously unselected package dctrl-tools. 176s Preparing to unpack .../24-dctrl-tools_2.24-3build3_arm64.deb ... 176s Unpacking dctrl-tools (2.24-3build3) ... 176s Selecting previously unselected package libgfortran-14-dev:arm64. 176s Preparing to unpack .../25-libgfortran-14-dev_14.2.0-7ubuntu1_arm64.deb ... 176s Unpacking libgfortran-14-dev:arm64 (14.2.0-7ubuntu1) ... 176s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 176s Preparing to unpack .../26-gfortran-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 176s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 176s Selecting previously unselected package gfortran-14. 176s Preparing to unpack .../27-gfortran-14_14.2.0-7ubuntu1_arm64.deb ... 176s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 176s Selecting previously unselected package gfortran-aarch64-linux-gnu. 176s Preparing to unpack .../28-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 176s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 176s Selecting previously unselected package gfortran. 176s Preparing to unpack .../29-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ... 176s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 176s Selecting previously unselected package icu-devtools. 176s Preparing to unpack .../30-icu-devtools_74.2-1ubuntu4_arm64.deb ... 176s Unpacking icu-devtools (74.2-1ubuntu4) ... 176s Selecting previously unselected package libblas-dev:arm64. 176s Preparing to unpack .../31-libblas-dev_3.12.0-3build2_arm64.deb ... 176s Unpacking libblas-dev:arm64 (3.12.0-3build2) ... 176s Selecting previously unselected package libbz2-dev:arm64. 176s Preparing to unpack .../32-libbz2-dev_1.0.8-6_arm64.deb ... 176s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 176s Selecting previously unselected package libdeflate-dev:arm64. 176s Preparing to unpack .../33-libdeflate-dev_1.21-1_arm64.deb ... 176s Unpacking libdeflate-dev:arm64 (1.21-1) ... 176s Selecting previously unselected package libicu-dev:arm64. 177s Preparing to unpack .../34-libicu-dev_74.2-1ubuntu4_arm64.deb ... 177s Unpacking libicu-dev:arm64 (74.2-1ubuntu4) ... 177s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 177s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 177s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 177s Selecting previously unselected package libjpeg8-dev:arm64. 177s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 177s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 177s Selecting previously unselected package libjpeg-dev:arm64. 177s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 177s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 177s Selecting previously unselected package liblapack-dev:arm64. 177s Preparing to unpack .../38-liblapack-dev_3.12.0-3build2_arm64.deb ... 177s Unpacking liblapack-dev:arm64 (3.12.0-3build2) ... 177s Selecting previously unselected package libncurses-dev:arm64. 177s Preparing to unpack .../39-libncurses-dev_6.5-2_arm64.deb ... 177s Unpacking libncurses-dev:arm64 (6.5-2) ... 177s Selecting previously unselected package libpcre2-16-0:arm64. 177s Preparing to unpack .../40-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ... 177s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 178s Selecting previously unselected package libpcre2-32-0:arm64. 178s Preparing to unpack .../41-libpcre2-32-0_10.42-4ubuntu3_arm64.deb ... 178s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 178s Selecting previously unselected package libpcre2-posix3:arm64. 178s Preparing to unpack .../42-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ... 178s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 178s Selecting previously unselected package libpcre2-dev:arm64. 178s Preparing to unpack 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.../48-liblzma-dev_5.6.2-2_arm64.deb ... 178s Unpacking liblzma-dev:arm64 (5.6.2-2) ... 178s Selecting previously unselected package pkgconf-bin. 178s Preparing to unpack .../49-pkgconf-bin_1.8.1-3ubuntu1_arm64.deb ... 178s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 178s Selecting previously unselected package pkgconf:arm64. 178s Preparing to unpack .../50-pkgconf_1.8.1-3ubuntu1_arm64.deb ... 178s Unpacking pkgconf:arm64 (1.8.1-3ubuntu1) ... 178s Selecting previously unselected package libtirpc-dev:arm64. 178s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 178s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 178s Selecting previously unselected package r-base-dev. 178s Preparing to unpack .../52-r-base-dev_4.4.1-1_all.deb ... 178s Unpacking r-base-dev (4.4.1-1) ... 178s Selecting previously unselected package pkg-r-autopkgtest. 178s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 178s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 178s Selecting previously unselected package r-cran-backports. 178s Preparing to unpack .../54-r-cran-backports_1.5.0-2_arm64.deb ... 178s Unpacking r-cran-backports (1.5.0-2) ... 178s Selecting previously unselected package r-cran-base64url. 178s Preparing to unpack .../55-r-cran-base64url_1.4-2build1_arm64.deb ... 178s Unpacking r-cran-base64url (1.4-2build1) ... 178s Selecting previously unselected package r-cran-brew. 178s Preparing to unpack .../56-r-cran-brew_1.0-10-1_all.deb ... 178s Unpacking r-cran-brew (1.0-10-1) ... 178s Selecting previously unselected package r-cran-checkmate. 178s Preparing to unpack .../57-r-cran-checkmate_2.3.1-1_arm64.deb ... 178s Unpacking r-cran-checkmate (2.3.1-1) ... 178s Selecting previously unselected package r-cran-data.table. 179s Preparing to unpack .../58-r-cran-data.table_1.15.4+dfsg-2.2_arm64.deb ... 179s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 179s Selecting previously unselected package r-cran-fs. 179s Preparing to unpack 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package r-cran-vctrs. 179s Preparing to unpack .../65-r-cran-vctrs_0.6.5-1_arm64.deb ... 179s Unpacking r-cran-vctrs (0.6.5-1) ... 179s Selecting previously unselected package r-cran-hms. 179s Preparing to unpack .../66-r-cran-hms_1.1.3-1_all.deb ... 179s Unpacking r-cran-hms (1.1.3-1) ... 179s Selecting previously unselected package r-cran-prettyunits. 179s Preparing to unpack .../67-r-cran-prettyunits_1.2.0-1_all.deb ... 179s Unpacking r-cran-prettyunits (1.2.0-1) ... 179s Selecting previously unselected package r-cran-r6. 179s Preparing to unpack .../68-r-cran-r6_2.5.1-1_all.deb ... 179s Unpacking r-cran-r6 (2.5.1-1) ... 179s Selecting previously unselected package r-cran-progress. 179s Preparing to unpack .../69-r-cran-progress_1.2.3-1_all.deb ... 179s Unpacking r-cran-progress (1.2.3-1) ... 179s Selecting previously unselected package r-cran-rappdirs. 179s Preparing to unpack .../70-r-cran-rappdirs_0.3.3-1_arm64.deb ... 179s Unpacking r-cran-rappdirs (0.3.3-1) ... 179s Selecting previously unselected package r-cran-stringi. 179s Preparing to unpack .../71-r-cran-stringi_1.8.3-1_arm64.deb ... 179s Unpacking r-cran-stringi (1.8.3-1) ... 179s Selecting previously unselected package r-cran-withr. 179s Preparing to unpack .../72-r-cran-withr_3.0.0+dfsg-1_all.deb ... 179s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-batchtools. 179s Preparing to unpack .../73-r-cran-batchtools_0.9.17+dfsg-1_arm64.deb ... 179s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 179s Selecting previously unselected package r-cran-future.batchtools. 180s Preparing to unpack .../74-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 180s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 180s Selecting previously unselected package autopkgtest-satdep. 180s Preparing to unpack .../75-2-autopkgtest-satdep.deb ... 180s Unpacking autopkgtest-satdep (0) ... 180s Setting up r-cran-fs (1.6.4+dfsg-1) ... 180s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 180s Setting up libncurses-dev:arm64 (6.5-2) ... 180s Setting up r-cran-withr (3.0.0+dfsg-1) ... 180s Setting up r-cran-backports (1.5.0-2) ... 180s Setting up r-cran-prettyunits (1.2.0-1) ... 180s Setting up r-cran-checkmate (2.3.1-1) ... 180s Setting up libreadline-dev:arm64 (8.2-5) ... 180s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 180s Setting up r-cran-glue (1.7.0-1) ... 180s Setting up r-cran-cli (3.6.2-1) ... 180s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 180s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 180s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 180s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 180s Setting up r-cran-brew (1.0-10-1) ... 180s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 180s Setting up libpkgconf3:arm64 (1.8.1-3ubuntu1) ... 180s Setting up r-cran-stringi (1.8.3-1) ... 180s Setting up r-cran-crayon (1.5.2-1) ... 180s Setting up libmpc3:arm64 (1.3.1-1build2) ... 180s Setting up icu-devtools (74.2-1ubuntu4) ... 180s Setting up pkgconf-bin (1.8.1-3ubuntu1) ... 180s Setting up liblzma-dev:arm64 (5.6.2-2) ... 180s Setting up libubsan1:arm64 (14.2.0-7ubuntu1) ... 180s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 180s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 180s Setting up libhwasan0:arm64 (14.2.0-7ubuntu1) ... 180s Setting up libasan8:arm64 (14.2.0-7ubuntu1) ... 180s Setting up libtsan2:arm64 (14.2.0-7ubuntu1) ... 180s Setting up r-cran-r6 (2.5.1-1) ... 180s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 180s Setting up libisl23:arm64 (0.27-1) ... 180s Setting up libdeflate-dev:arm64 (1.21-1) ... 180s Setting up libicu-dev:arm64 (74.2-1ubuntu4) ... 180s Setting up libcc1-0:arm64 (14.2.0-7ubuntu1) ... 180s Setting up r-cran-vctrs (0.6.5-1) ... 180s Setting up r-cran-rappdirs (0.3.3-1) ... 180s Setting up liblsan0:arm64 (14.2.0-7ubuntu1) ... 180s Setting up libblas-dev:arm64 (3.12.0-3build2) ... 180s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 180s Setting up dctrl-tools (2.24-3build3) ... 180s Setting up libitm1:arm64 (14.2.0-7ubuntu1) ... 180s Setting up libbz2-dev:arm64 (1.0.8-6) ... 180s Setting up r-cran-base64url (1.4-2build1) ... 180s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ... 180s Setting up libpng-dev:arm64 (1.6.44-1) ... 180s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 180s Setting up pkgconf:arm64 (1.8.1-3ubuntu1) ... 180s Setting up r-cran-hms (1.1.3-1) ... 180s Setting up liblapack-dev:arm64 (3.12.0-3build2) ... 180s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 180s Setting up cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 180s Setting up libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 180s Setting up libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 180s Setting up r-cran-progress (1.2.3-1) ... 180s Setting up libgfortran-14-dev:arm64 (14.2.0-7ubuntu1) ... 180s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 180s Setting up cpp-14 (14.2.0-7ubuntu1) ... 180s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 180s Setting up cpp (4:14.1.0-2ubuntu1) ... 180s Setting up gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 180s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 180s Setting up g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 180s Setting up gcc-14 (14.2.0-7ubuntu1) ... 180s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 180s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 180s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 180s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 180s Setting up g++-14 (14.2.0-7ubuntu1) ... 180s Setting up gfortran-14 (14.2.0-7ubuntu1) ... 180s Setting up gcc (4:14.1.0-2ubuntu1) ... 180s Setting up g++ (4:14.1.0-2ubuntu1) ... 180s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 180s Setting up build-essential (12.10ubuntu1) ... 180s Setting up gfortran (4:14.1.0-2ubuntu1) ... 180s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 180s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 180s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 180s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 180s Setting up r-base-dev (4.4.1-1) ... 180s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 180s Setting up autopkgtest-satdep (0) ... 180s Processing triggers for man-db (2.12.1-3) ... 181s Processing triggers for install-info (7.1.1-1) ... 181s Processing triggers for libc-bin (2.40-1ubuntu3) ... 184s (Reading database ... 89971 files and directories currently installed.) 184s Removing autopkgtest-satdep (0) ... 185s autopkgtest [18:45:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 185s autopkgtest [18:45:10]: test pkg-r-autopkgtest: [----------------------- 185s Test: Try to load the R library gstat 185s 185s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 185s Copyright (C) 2024 The R Foundation for Statistical Computing 185s Platform: aarch64-unknown-linux-gnu 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 186s > library('gstat') 186s > 186s > 186s Other tests are currently unsupported! 186s They will be progressively added. 187s autopkgtest [18:45:12]: test pkg-r-autopkgtest: -----------------------] 187s autopkgtest [18:45:12]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 187s pkg-r-autopkgtest PASS 188s autopkgtest [18:45:13]: @@@@@@@@@@@@@@@@@@@@ summary 188s run-unit-test PASS 188s pkg-r-autopkgtest PASS 203s nova [W] Skipping flock in bos03-arm64 203s Creating nova instance adt-plucky-arm64-r-cran-gstat-20241101-184204-juju-7f2275-prod-proposed-migration-environment-2-03453600-35b6-496c-9f57-fe3e31e45e04 from image adt/ubuntu-plucky-arm64-server-20241101.img (UUID 520a937f-514a-4e80-b76b-163a8c247e3e)...