0s autopkgtest [13:24:15]: starting date and time: 2025-03-15 13:24:15+0000 0s autopkgtest [13:24:15]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [13:24:15]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.69ddoav3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-circular --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-13.secgroup --name adt-plucky-arm64-r-cran-circular-20250315-132415-juju-7f2275-prod-proposed-migration-environment-15-ba2e4bed-5e5f-460c-b726-d8db385b4188 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 176s autopkgtest [13:27:11]: testbed dpkg architecture: arm64 176s autopkgtest [13:27:11]: testbed apt version: 2.9.33 177s autopkgtest [13:27:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 177s autopkgtest [13:27:12]: testbed release detected to be: None 178s autopkgtest [13:27:13]: updating testbed package index (apt update) 178s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 178s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 178s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 178s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 179s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 179s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 179s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 179s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 179s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 179s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 179s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 180s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 180s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 180s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 180s Fetched 1094 kB in 2s (628 kB/s) 181s Reading package lists... 182s + lsb_release --codename --short 182s + RELEASE=plucky 182s + cat 182s + [ plucky != trusty ] 182s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s Calculating upgrade... 183s Calculating upgrade... 184s The following packages will be upgraded: 184s python3-jinja2 strace 184s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 608 kB of archives. 184s After this operation, 11.3 kB of additional disk space will be used. 184s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 184s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 185s Fetched 608 kB in 1s (646 kB/s) 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 186s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 186s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 186s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 186s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 186s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 186s Setting up strace (6.13+ds-1ubuntu1) ... 186s Processing triggers for man-db (2.13.0-1) ... 187s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 187s + /usr/lib/apt/apt-helper analyze-pattern ?true 187s + uname -r 187s + sed s/\./\\./g 187s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 187s + + tail -n+2 187s apt list ?obsolete 187s + grep -v ^linux-.*6\.14\.0-10-generic.* 187s + cut -d/ -f1 188s + obsolete_pkgs=linux-headers-6.11.0-8-generic 188s linux-headers-6.11.0-8 188s linux-image-6.11.0-8-generic 188s linux-modules-6.11.0-8-generic 188s linux-tools-6.11.0-8-generic 188s linux-tools-6.11.0-8 188s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Solving dependencies... 190s The following packages will be REMOVED: 190s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 190s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 190s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 190s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 190s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 190s After this operation, 267 MB disk space will be freed. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 191s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 191s Removing libpython3.12t64:arm64 (3.12.9-1) ... 191s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 191s Removing libnsl2:arm64 (1.3.0-3build3) ... 191s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 191s Removing libunwind8:arm64 (1.6.2-3.1) ... 191s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 193s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 193s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 193s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 193s /etc/kernel/postrm.d/initramfs-tools: 193s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 194s /etc/kernel/postrm.d/zz-flash-kernel: 194s flash-kernel: Kernel 6.11.0-8-generic has been removed. 194s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 194s /etc/kernel/postrm.d/zz-update-grub: 194s Sourcing file `/etc/default/grub' 194s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 194s Generating grub configuration file ... 194s Found linux image: /boot/vmlinuz-6.14.0-10-generic 194s Found initrd image: /boot/initrd.img-6.14.0-10-generic 195s Warning: os-prober will not be executed to detect other bootable partitions. 195s Systems on them will not be added to the GRUB boot configuration. 195s Check GRUB_DISABLE_OS_PROBER documentation entry. 195s Adding boot menu entry for UEFI Firmware Settings ... 195s done 195s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s Processing triggers for libc-bin (2.41-1ubuntu1) ... 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 195s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 196s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 196s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 196s + grep -q trusty /etc/lsb-release 196s + [ ! -d /usr/share/doc/unattended-upgrades ] 196s + [ ! -d /usr/share/doc/lxd ] 196s + [ ! -d /usr/share/doc/lxd-client ] 196s + [ ! -d /usr/share/doc/snapd ] 196s + type iptables 196s + cat 196s + chmod 755 /etc/rc.local 196s + . /etc/rc.local 196s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 196s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 196s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 196s + uname -m 196s + [ aarch64 = ppc64le ] 196s + [ -d /run/systemd/system ] 196s + systemd-detect-virt --quiet --vm 196s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 196s + cat 196s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 196s + echo COMPRESS=lz4 196s autopkgtest [13:27:31]: upgrading testbed (apt dist-upgrade and autopurge) 196s Reading package lists... 197s Building dependency tree... 197s Reading state information... 198s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 198s Starting 2 pkgProblemResolver with broken count: 0 198s Done 200s Entering ResolveByKeep 200s 201s Calculating upgrade... 202s The following packages will be upgraded: 202s libc-bin libc-dev-bin libc6 libc6-dev locales 202s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s Need to get 9530 kB of archives. 202s After this operation, 0 B of additional disk space will be used. 202s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 204s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 204s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 207s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 208s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 213s Preconfiguring packages ... 213s Fetched 9530 kB in 10s (919 kB/s) 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 213s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 213s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 213s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 213s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 213s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 213s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 214s Setting up libc6:arm64 (2.41-1ubuntu2) ... 214s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 214s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 214s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 214s Setting up libc-bin (2.41-1ubuntu2) ... 214s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 214s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 214s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up locales (2.41-1ubuntu2) ... 216s Generating locales (this might take a while)... 218s en_US.UTF-8... done 218s Generation complete. 218s Setting up libc-dev-bin (2.41-1ubuntu2) ... 218s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 218s Processing triggers for man-db (2.13.0-1) ... 219s Processing triggers for systemd (257.3-1ubuntu3) ... 220s Reading package lists... 221s Building dependency tree... 221s Reading state information... 221s Starting pkgProblemResolver with broken count: 0 222s Starting 2 pkgProblemResolver with broken count: 0 222s Done 222s Solving dependencies... 223s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 223s autopkgtest [13:27:58]: rebooting testbed after setup commands that affected boot 250s autopkgtest [13:28:25]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 252s autopkgtest [13:28:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-circular 255s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-circular 0.5-1-1 (dsc) [2110 B] 255s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-circular 0.5-1-1 (tar) [184 kB] 255s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-circular 0.5-1-1 (diff) [3396 B] 255s gpgv: Signature made Wed Jan 29 00:29:05 2025 UTC 255s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 255s gpgv: issuer "plessy@debian.org" 255s gpgv: Can't check signature: No public key 255s dpkg-source: warning: cannot verify inline signature for ./r-cran-circular_0.5-1-1.dsc: no acceptable signature found 256s autopkgtest [13:28:31]: testing package r-cran-circular version 0.5-1-1 256s autopkgtest [13:28:31]: build not needed 262s autopkgtest [13:28:37]: test run-unit-test: preparing testbed 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 264s Starting pkgProblemResolver with broken count: 0 264s Starting 2 pkgProblemResolver with broken count: 0 264s Done 265s The following NEW packages will be installed: 265s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 265s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libgfortran5 libgomp1 265s libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 265s liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 265s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 265s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 265s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-boot 265s r-cran-circular r-cran-mvtnorm unzip x11-common xdg-utils zip 266s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 266s Need to get 40.7 MB of archives. 266s After this operation, 82.6 MB of additional disk space will be used. 266s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 266s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 267s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 267s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 267s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 267s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 267s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 268s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 268s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 268s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 268s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 268s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 268s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 268s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 269s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 269s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 269s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 269s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 270s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 270s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 270s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 270s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 272s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 272s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 272s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 272s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 272s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 272s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 272s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 272s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 272s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 272s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 272s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 273s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 273s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 273s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 273s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 273s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 273s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 274s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 274s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 274s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 274s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 274s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 295s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-boot all 1.3-31-1 [635 kB] 296s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mvtnorm arm64 1.3-3-1 [921 kB] 297s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-circular arm64 0.5-1-1 [827 kB] 298s Preconfiguring packages ... 298s Fetched 40.7 MB in 32s (1277 kB/s) 298s Selecting previously unselected package fonts-dejavu-mono. 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 298s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 298s Unpacking fonts-dejavu-mono (2.37-8) ... 298s Selecting previously unselected package fonts-dejavu-core. 298s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 298s Unpacking fonts-dejavu-core (2.37-8) ... 299s Selecting previously unselected package fontconfig-config. 299s Preparing to unpack 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(1.3-31-1) ... 307s Setting up r-cran-mvtnorm (1.3-3-1) ... 307s Setting up r-cran-circular (0.5-1-1) ... 307s Processing triggers for libc-bin (2.41-1ubuntu2) ... 307s Processing triggers for man-db (2.13.0-1) ... 308s Processing triggers for install-info (7.1.1-1) ... 310s autopkgtest [13:29:25]: test run-unit-test: [----------------------- 310s BEGIN TEST test-median.R 310s 310s R version 4.4.3 (2025-02-28) -- "Trophy Case" 310s Copyright (C) 2025 The R Foundation for Statistical Computing 310s Platform: aarch64-unknown-linux-gnu 310s 310s R is free software and comes with ABSOLUTELY NO WARRANTY. 310s You are welcome to redistribute it under certain conditions. 310s Type 'license()' or 'licence()' for distribution details. 310s 310s R is a collaborative project with many contributors. 310s Type 'contributors()' for more information and 310s 'citation()' on how to cite R or R packages in publications. 310s 310s Type 'demo()' for some demos, 'help()' for on-line help, or 310s 'help.start()' for an HTML browser interface to help. 310s Type 'q()' to quit R. 310s 311s > suppressMessages(library("circular")) 311s > # ?median.circular 311s > 311s > 311s > med <- median.circular(circular(c(0, pi/2, pi, 3/2*pi))) 311s > 311s > ## expect: 311s > ## median is equal to NA 311s > stopifnot( 311s + is.na(med) 311s + ) 311s > 311s > ## expect: 311s > ## all the points are minimizers of the function 311s > stopifnot( 311s + all.equal(attr(med, "medians"), c(0, pi/2, pi, 3/2*pi), tol = 2e-7) 311s + ) 311s > 311s > 311s BEGIN TEST test-walraff.test.R 311s 311s R version 4.4.3 (2025-02-28) -- "Trophy Case" 311s Copyright (C) 2025 The R Foundation for Statistical Computing 311s Platform: aarch64-unknown-linux-gnu 311s 311s R is free software and comes with ABSOLUTELY NO WARRANTY. 311s You are welcome to redistribute it under certain conditions. 311s Type 'license()' or 'licence()' for distribution details. 311s 311s R is a collaborative project with many contributors. 311s Type 'contributors()' for more information and 311s 'citation()' on how to cite R or R packages in publications. 311s 311s Type 'demo()' for some demos, 'help()' for on-line help, or 311s 'help.start()' for an HTML browser interface to help. 311s Type 'q()' to quit R. 311s 311s > # Test data from: 311s > # Batschelet, E (1981). Circular Statistics in Biology. 311s > # Examples 6.10.1 and 6.10.2, p 126 311s > # 311s > 311s > suppressMessages(library("circular")) 311s > # ?wallraff.test 311s > 311s > angles <- circular(c(70, 80, 80, 85, 85, 90, 95, 95, 5, 5, 15, 55, 55, 65, 105, 120, 340), units="degrees", template="geographics") 311s > group <- factor(c(rep("control", 8), rep("experimental", 9))) 311s > 311s > homeDir <- 40 311s > 311s > # expect: 311s > # W = 2 (in wilcox.test) and p < 0.01 for the dispersion test 311s > # W = 26 (in wilcox.test) and p > 0.05 for the homing test 311s > 311s > xn <- angles 311s > wallraff.test(xn, group) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: xn by group 311s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 311s 311s > 311s > wallraff.test(xn, group, ref=homeDir) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: xn by group 311s Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 311s 311s > wallraff.test(xn, as.factor(group), ref=homeDir) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: xn by as.factor(group) 311s Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 311s 311s > 311s > 311s > xl <- split(xn, group) 311s > wallraff.test(xl, ref=homeDir) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: control and experimental 311s Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 311s 311s > wallraff.test(xl) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: control and experimental 311s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 311s 311s > 311s > xl <- split(xn, group) 311s > names(xl) <- NULL 311s > wallraff.test(xl) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: 1 and 2 311s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 311s 311s > 311s > xd <- data.frame(group=group, angles=angles) 311s > wallraff.test(angles ~ group, xd) 311s 311s Wallraff rank sum test of angular distance 311s 311s data: angles by group 311s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 311s 311s > 311s BEGIN TEST test-watson.williams.test.R 311s 311s R version 4.4.3 (2025-02-28) -- "Trophy Case" 311s Copyright (C) 2025 The R Foundation for Statistical Computing 311s Platform: aarch64-unknown-linux-gnu 311s 311s R is free software and comes with ABSOLUTELY NO WARRANTY. 311s You are welcome to redistribute it under certain conditions. 311s Type 'license()' or 'licence()' for distribution details. 311s 311s R is a collaborative project with many contributors. 311s Type 'contributors()' for more information and 311s 'citation()' on how to cite R or R packages in publications. 311s 311s Type 'demo()' for some demos, 'help()' for on-line help, or 311s 'help.start()' for an HTML browser interface to help. 311s Type 'q()' to quit R. 311s 311s > # Test data from: 311s > # Circular statistics in biology, Batschelet, E (1981) 311s > # §6.2, p99 311s > # 311s > 311s > suppressMessages(library("circular")) 311s > # ?watson.williams.test 311s > 311s > angles <- circular( c(rep(c(-20, -10, 0), c(1,7,2)), rep(c(-10, 0, 10, 20), c(3,3,3,1))), units="degrees", template="geographics") 311s > group <- factor(rep(c("exp", "control"), each=10)) 311s > 311s > # expect this: 311s > # F = 8.7329, df1 = 1, df2 = 18, p-value = 0.003108 311s > # mean of control mean of exp 311s > # 1.988969 -9.000615 311s > 311s > # Test interfaces 311s > xn <- angles 311s > watson.williams.test(xn, group) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: xn by group 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of control mean of exp 311s 1.988969 -9.000615 311s 311s > 311s > xl <- split(xn, group) 311s > watson.williams.test(xl) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: control and exp 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of control mean of exp 311s 1.988969 -9.000615 311s 311s > 311s > xl <- split(xn, group) 311s > names(xl) <- NULL 311s > watson.williams.test(xl) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: 1 and 2 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of 1 mean of 2 311s 1.988969 -9.000615 311s 311s > 311s > xd <- data.frame(group=group, angles=angles) 311s > watson.williams.test(angles ~ group, xd) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: angles by group 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of control mean of exp 311s 1.988969 -9.000615 311s 311s > 311s > # Test the influence of ordering the groups 311s > id <- c(9, 8, 7, 4, 6, 5, 12, 18, 10, 17, 1, 19, 3, 20, 2, 16, 15, 14, 13, 11) 311s > angles <- angles[id] 311s > group <- group[id] 311s > 311s > xn <- angles 311s > watson.williams.test(xn, group) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: xn by group 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of control mean of exp 311s 1.988969 -9.000615 311s 311s > xl <- split(xn, group) 311s > watson.williams.test(xl) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: control and exp 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of control mean of exp 311s 1.988969 -9.000615 311s 311s > xd <- data.frame(group=group, angles=angles) 311s > watson.williams.test(angles ~ group, xd) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: angles by group 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of control mean of exp 311s 1.988969 -9.000615 311s 311s > 311s > # Test NAs 311s > angles[length(angles)+1] <- NA 311s > levels(group) <- c("exp", "control", "bar") 311s > group[length(group)+1] <- "bar" 311s > xn <- angles 311s > watson.williams.test(xn, group) 311s 311s Watson-Williams test for homogeneity of means 311s 311s data: xn by group 311s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 311s sample estimates: 311s Circular Data: 311s Type = angles 311s Units = degrees 311s Template = geographics 311s Modulo = asis 311s Zero = 1.570796 311s Rotation = clock 311s mean of exp mean of control 311s 1.988969 -9.000615 311s 311s > 312s autopkgtest [13:29:27]: test run-unit-test: -----------------------] 312s autopkgtest [13:29:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 312s run-unit-test PASS 313s autopkgtest [13:29:28]: test pkg-r-autopkgtest: preparing testbed 313s Reading package lists... 314s Building dependency tree... 314s Reading state information... 314s Starting pkgProblemResolver with broken count: 0 314s Starting 2 pkgProblemResolver with broken count: 0 314s Done 315s The following NEW packages will be installed: 315s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 315s dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 315s gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 315s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 315s libasan8 libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 315s libgfortran-14-dev libhwasan0 libicu-dev libisl23 libitm1 libjpeg-dev 315s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 liblzma-dev libmpc3 315s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 315s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 315s libtsan2 libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 315s zlib1g-dev 316s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 316s Need to get 92.7 MB of archives. 316s After this operation, 334 MB of additional disk space will be used. 316s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 317s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 317s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 326s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 326s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 326s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 326s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 326s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 326s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 329s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 330s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 332s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 333s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 334s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 336s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 350s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 350s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 350s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 350s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 352s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 362s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 362s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 362s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 362s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 362s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 362s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 362s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 374s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 374s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 374s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 374s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 374s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 374s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 374s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 374s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 387s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 387s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 387s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 387s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 392s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 392s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 392s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 393s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 393s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 393s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 393s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 394s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 394s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 394s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 395s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 395s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 395s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 395s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 395s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 396s Fetched 92.7 MB in 1min 19s (1167 kB/s) 396s Selecting previously unselected package libisl23:arm64. 396s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83965 files and directories currently installed.) 396s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ... 396s Unpacking libisl23:arm64 (0.27-1) ... 396s Selecting previously unselected package libmpc3:arm64. 396s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ... 396s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 396s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 396s Preparing to unpack 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libhwasan0:arm64 (15-20250222-0ubuntu1) ... 397s Selecting previously unselected package libgcc-14-dev:arm64. 397s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 397s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 397s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 397s Preparing to unpack .../14-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 397s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 398s Selecting previously unselected package gcc-14. 398s Preparing to unpack .../15-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 398s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 398s Selecting previously unselected package gcc-aarch64-linux-gnu. 398s Preparing to unpack .../16-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 398s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 398s Selecting previously unselected package gcc. 398s Preparing to unpack .../17-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 398s Unpacking gcc 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libdeflate-dev:arm64. 400s Preparing to unpack .../33-libdeflate-dev_1.23-1_arm64.deb ... 400s Unpacking libdeflate-dev:arm64 (1.23-1) ... 400s Selecting previously unselected package libicu-dev:arm64. 400s Preparing to unpack .../34-libicu-dev_76.1-1ubuntu2_arm64.deb ... 400s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 400s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 401s Preparing to unpack .../35-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 401s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 401s Selecting previously unselected package libjpeg8-dev:arm64. 401s Preparing to unpack .../36-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 401s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 401s Selecting previously unselected package libjpeg-dev:arm64. 401s Preparing to unpack .../37-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 401s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 401s Selecting previously unselected package liblapack-dev:arm64. 401s Preparing to unpack .../38-liblapack-dev_3.12.1-2_arm64.deb ... 401s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 401s Selecting previously unselected package libncurses-dev:arm64. 401s Preparing to unpack .../39-libncurses-dev_6.5+20250216-2_arm64.deb ... 401s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 401s Selecting previously unselected package libpcre2-16-0:arm64. 401s Preparing to unpack .../40-libpcre2-16-0_10.45-1_arm64.deb ... 401s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 401s Selecting previously unselected package libpcre2-32-0:arm64. 401s Preparing to unpack .../41-libpcre2-32-0_10.45-1_arm64.deb ... 401s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 401s Selecting previously unselected package libpcre2-posix3:arm64. 401s Preparing to unpack .../42-libpcre2-posix3_10.45-1_arm64.deb ... 401s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 401s Selecting previously unselected package libpcre2-dev:arm64. 401s Preparing to unpack .../43-libpcre2-dev_10.45-1_arm64.deb ... 401s 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previously unselected package pkgconf-bin. 402s Preparing to unpack .../49-pkgconf-bin_1.8.1-4_arm64.deb ... 402s Unpacking pkgconf-bin (1.8.1-4) ... 402s Selecting previously unselected package pkgconf:arm64. 402s Preparing to unpack .../50-pkgconf_1.8.1-4_arm64.deb ... 402s Unpacking pkgconf:arm64 (1.8.1-4) ... 402s Selecting previously unselected package libtirpc-dev:arm64. 402s Preparing to unpack .../51-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 402s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 402s Selecting previously unselected package r-base-dev. 402s Preparing to unpack .../52-r-base-dev_4.4.3-1_all.deb ... 402s Unpacking r-base-dev (4.4.3-1) ... 402s Selecting previously unselected package pkg-r-autopkgtest. 402s Preparing to unpack .../53-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 402s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 402s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 402s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 402s Setting up libreadline-dev:arm64 (8.2-6) ... 402s Setting up libpcre2-16-0:arm64 (10.45-1) ... 402s Setting up libpcre2-32-0:arm64 (10.45-1) ... 402s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 402s Setting up libpkgconf3:arm64 (1.8.1-4) ... 402s Setting up libmpc3:arm64 (1.3.1-1build2) ... 402s Setting up icu-devtools (76.1-1ubuntu2) ... 402s Setting up pkgconf-bin (1.8.1-4) ... 402s Setting up liblzma-dev:arm64 (5.6.4-1) ... 402s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 402s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 402s Setting up libpcre2-posix3:arm64 (10.45-1) ... 402s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 402s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 402s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 402s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 402s Setting up libisl23:arm64 (0.27-1) ... 402s Setting up libdeflate-dev:arm64 (1.23-1) ... 402s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 402s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 402s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 402s Setting up libblas-dev:arm64 (3.12.1-2) ... 402s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 402s Setting up dctrl-tools (2.24-3build3) ... 402s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 402s Setting up libbz2-dev:arm64 (1.0.8-6) ... 402s Setting up libpcre2-dev:arm64 (10.45-1) ... 402s Setting up libpng-dev:arm64 (1.6.47-1) ... 402s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 402s Setting up pkgconf:arm64 (1.8.1-4) ... 402s Setting up liblapack-dev:arm64 (3.12.1-2) ... 402s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 402s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 402s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 402s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 402s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 402s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 402s Setting up cpp-14 (14.2.0-17ubuntu3) ... 402s Setting up cpp (4:14.2.0-1ubuntu1) ... 402s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 402s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 402s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 402s Setting up gcc-14 (14.2.0-17ubuntu3) ... 402s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 402s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 402s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 402s Setting up g++-14 (14.2.0-17ubuntu3) ... 402s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 402s Setting up gcc (4:14.2.0-1ubuntu1) ... 402s Setting up g++ (4:14.2.0-1ubuntu1) ... 402s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 402s Setting up build-essential (12.10ubuntu1) ... 402s Setting up gfortran (4:14.2.0-1ubuntu1) ... 402s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 402s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 402s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 402s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 402s Setting up r-base-dev (4.4.3-1) ... 402s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 402s Processing triggers for libc-bin (2.41-1ubuntu2) ... 402s Processing triggers for man-db (2.13.0-1) ... 404s Processing triggers for install-info (7.1.1-1) ... 405s autopkgtest [13:31:00]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 405s autopkgtest [13:31:00]: test pkg-r-autopkgtest: [----------------------- 405s Test: Try to load the R library circular 406s 406s R version 4.4.3 (2025-02-28) -- "Trophy Case" 406s Copyright (C) 2025 The R Foundation for Statistical Computing 406s Platform: aarch64-unknown-linux-gnu 406s 406s R is free software and comes with ABSOLUTELY NO WARRANTY. 406s You are welcome to redistribute it under certain conditions. 406s Type 'license()' or 'licence()' for distribution details. 406s 406s R is a collaborative project with many contributors. 406s Type 'contributors()' for more information and 406s 'citation()' on how to cite R or R packages in publications. 406s 406s Type 'demo()' for some demos, 'help()' for on-line help, or 406s 'help.start()' for an HTML browser interface to help. 406s Type 'q()' to quit R. 406s 406s > library('circular') 406s 406s Attaching package: ‘circular’ 406s 406s The following objects are masked from ‘package:stats’: 406s 406s sd, var 406s 406s > 406s > 406s Other tests are currently unsupported! 406s They will be progressively added. 406s autopkgtest [13:31:01]: test pkg-r-autopkgtest: -----------------------] 407s autopkgtest [13:31:02]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 407s pkg-r-autopkgtest PASS 407s autopkgtest [13:31:02]: @@@@@@@@@@@@@@@@@@@@ summary 407s run-unit-test PASS 407s pkg-r-autopkgtest PASS 425s nova [W] Using flock in prodstack6-arm64 425s flock: timeout while waiting to get lock 425s Creating nova instance adt-plucky-arm64-r-cran-circular-20250315-132415-juju-7f2275-prod-proposed-migration-environment-15-ba2e4bed-5e5f-460c-b726-d8db385b4188 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 425s nova [W] Timed out waiting for 58291d76-e36c-435d-813c-6a638b813f3e to get deleted.