0s autopkgtest [15:19:46]: starting date and time: 2025-03-15 15:19:46+0000 0s autopkgtest [15:19:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:19:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dl633o6y/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-bio3d --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-20.secgroup --name adt-plucky-arm64-r-cran-bio3d-20250315-151946-juju-7f2275-prod-proposed-migration-environment-2-680173fd-3a08-42ec-b907-af72aee0fbfa --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 134s autopkgtest [15:22:00]: testbed dpkg architecture: arm64 134s autopkgtest [15:22:00]: testbed apt version: 2.9.33 135s autopkgtest [15:22:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 135s autopkgtest [15:22:01]: testbed release detected to be: None 136s autopkgtest [15:22:02]: updating testbed package index (apt update) 137s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 137s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 137s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 137s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 137s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 137s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 137s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 138s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 138s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 138s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 138s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 138s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 138s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 138s Fetched 1094 kB in 1s (895 kB/s) 139s Reading package lists... 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Calculating upgrade... 142s Calculating upgrade... 143s The following packages will be upgraded: 143s python3-jinja2 strace 143s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 608 kB of archives. 143s After this operation, 11.3 kB of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 144s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 145s Fetched 608 kB in 1s (797 kB/s) 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 145s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 145s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 145s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 145s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 145s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 146s Setting up strace (6.13+ds-1ubuntu1) ... 146s Processing triggers for man-db (2.13.0-1) ... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s Solving dependencies... 149s The following packages will be REMOVED: 149s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 149s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 149s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 149s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 149s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 149s After this operation, 267 MB disk space will be freed. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 149s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 149s Removing libpython3.12t64:arm64 (3.12.9-1) ... 149s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 149s Removing libnsl2:arm64 (1.3.0-3build3) ... 149s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 150s Removing libunwind8:arm64 (1.6.2-3.1) ... 150s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 150s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 152s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 152s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 152s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 152s /etc/kernel/postrm.d/initramfs-tools: 152s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 152s /etc/kernel/postrm.d/zz-flash-kernel: 152s flash-kernel: Kernel 6.11.0-8-generic has been removed. 152s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 153s /etc/kernel/postrm.d/zz-update-grub: 153s Sourcing file `/etc/default/grub' 153s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 153s Generating grub configuration file ... 153s Found linux image: /boot/vmlinuz-6.14.0-10-generic 153s Found initrd image: /boot/initrd.img-6.14.0-10-generic 153s Warning: os-prober will not be executed to detect other bootable partitions. 153s Systems on them will not be added to the GRUB boot configuration. 153s Check GRUB_DISABLE_OS_PROBER documentation entry. 153s Adding boot menu entry for UEFI Firmware Settings ... 153s done 154s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 154s Processing triggers for libc-bin (2.41-1ubuntu1) ... 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 154s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 154s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 154s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 154s autopkgtest [15:22:20]: upgrading testbed (apt dist-upgrade and autopurge) 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 156s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 158s Entering ResolveByKeep 159s 159s Calculating upgrade... 160s The following packages will be upgraded: 160s libc-bin libc-dev-bin libc6 libc6-dev locales 160s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 9530 kB of archives. 160s After this operation, 0 B of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 161s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 162s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 163s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 164s Preconfiguring packages ... 164s Fetched 9530 kB in 3s (2836 kB/s) 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 164s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 164s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 165s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 165s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up libc6:arm64 (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up libc-bin (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 166s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up locales (2.41-1ubuntu2) ... 167s Generating locales (this might take a while)... 170s en_US.UTF-8... done 170s Generation complete. 170s Setting up libc-dev-bin (2.41-1ubuntu2) ... 170s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 170s Processing triggers for man-db (2.13.0-1) ... 171s Processing triggers for systemd (257.3-1ubuntu3) ... 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s Solving dependencies... 176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 176s autopkgtest [15:22:42]: rebooting testbed after setup commands that affected boot 200s autopkgtest [15:23:06]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 203s autopkgtest [15:23:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bio3d 206s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-5-1 (dsc) [2285 B] 206s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-5-1 (tar) [1544 kB] 206s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-5-1 (diff) [5468 B] 207s gpgv: Signature made Wed Jan 29 00:14:06 2025 UTC 207s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 207s gpgv: issuer "plessy@debian.org" 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./r-cran-bio3d_2.4-5-1.dsc: no acceptable signature found 207s autopkgtest [15:23:13]: testing package r-cran-bio3d version 2.4-5-1 208s autopkgtest [15:23:14]: build not needed 212s autopkgtest [15:23:18]: test run-unit-test: preparing testbed 212s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 214s The following NEW packages will be installed: 214s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 214s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 214s javascript-common libaec0 libamd3 libasan8 libblas3 libboost-dev 214s libboost1.83-dev libcairo2 libcolamd3 libdatrie1 libdeflate0 libfontconfig1 214s libgcc-14-dev libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b 214s libhdf5-310 libhdf5-hl-310 libhwasan0 libice6 libitm1 libjbig0 214s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 214s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 214s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 214s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 214s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 liblerc4 214s liblsan0 libltdl7 liblua5.4-0 libnetcdf22 libpango-1.0-0 libpangocairo-1.0-0 214s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 214s libstdc++-14-dev libsuitesparseconfig7 libsz2 libtcl8.6 libthai-data 214s libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 214s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 214s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 214s r-base-core r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 214s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-ucsc.utils 214s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc r-cran-bh 214s r-cran-bigmemory r-cran-bigmemory.sri r-cran-bio3d r-cran-bitops r-cran-brio 214s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark 214s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj 214s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 214s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 214s r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 214s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 214s r-cran-memoise r-cran-mime r-cran-ncdf4 r-cran-openssl r-cran-pkgbuild 214s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise 214s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 214s r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 214s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-testthat 214s r-cran-tinytex r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr 214s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils 214s zip zlib1g-dev 214s 0 upgraded, 173 newly installed, 0 to remove and 0 not upgraded. 214s Need to get 190 MB of archives. 214s After this operation, 743 MB of additional disk space will be used. 214s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 215s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 215s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 215s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 215s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 215s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 215s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 215s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 215s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 215s Get:10 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 215s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 216s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [13.2 kB] 216s Get:13 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-3 [26.1 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 216s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 216s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 216s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 216s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 216s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 217s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 217s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 217s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 217s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 218s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 218s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 218s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 218s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 218s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 218s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 218s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [18.3 kB] 218s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 218s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 218s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 218s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 218s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB] 218s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 218s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 218s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 218s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 219s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 219s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 219s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 219s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 219s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 219s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 219s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 219s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 219s Get:48 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 219s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 219s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 219s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 219s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 219s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 219s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 219s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 219s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 219s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 219s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 219s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 219s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 219s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 219s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 220s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 220s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 220s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 220s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 220s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 220s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 220s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 220s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 220s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 220s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 220s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 220s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 220s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 220s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 220s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 220s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 220s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 220s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 220s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 220s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 220s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 222s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 222s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 222s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 222s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 222s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 222s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 222s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 223s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 223s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 223s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 223s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 223s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 223s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 223s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 223s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 223s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 223s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 223s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 223s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 223s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 223s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 223s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 223s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 224s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 224s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 224s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 225s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 225s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 225s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 225s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 225s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 225s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB] 225s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bigmemory arm64 4.6.4-1ubuntu1 [458 kB] 225s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bio3d arm64 2.4-5-1 [3013 kB] 226s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 226s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 226s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 226s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 226s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 226s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 226s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 226s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 226s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 226s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 226s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 226s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 226s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 226s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 226s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 226s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 226s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 226s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 226s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 226s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 226s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 226s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 226s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 226s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 226s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 226s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 226s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 226s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 226s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 226s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 226s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 226s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 226s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 227s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 227s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 227s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB] 228s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 228s Get:155 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 228s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 228s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ncdf4 arm64 1.23-1build1 [277 kB] 228s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 228s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 229s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 229s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 229s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 229s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 229s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 229s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 229s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 229s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 229s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 229s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 229s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 229s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 229s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 229s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 230s Preconfiguring packages ... 230s Fetched 190 MB in 15s (12.5 MB/s) 230s Selecting previously unselected package fonts-dejavu-mono. 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 231s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 231s Unpacking fonts-dejavu-mono (2.37-8) ... 231s Selecting previously unselected package fonts-dejavu-core. 231s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 231s Unpacking fonts-dejavu-core (2.37-8) ... 231s Selecting previously unselected package fontconfig-config. 231s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 231s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package libfontconfig1:arm64. 231s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 231s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package fontconfig. 231s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 231s Unpacking fontconfig (2.15.0-2ubuntu1) ... 231s Selecting previously unselected package fonts-font-awesome. 231s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 231s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 231s Selecting previously unselected package fonts-glyphicons-halflings. 231s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 231s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 231s Selecting previously unselected package fonts-mathjax. 232s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 232s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 232s Selecting previously unselected package javascript-common. 232s Preparing to unpack .../008-javascript-common_12_all.deb ... 232s Unpacking javascript-common (12) ... 232s Selecting previously unselected package libaec0:arm64. 232s Preparing to unpack .../009-libaec0_1.1.3-1_arm64.deb ... 232s Unpacking libaec0:arm64 (1.1.3-1) ... 232s Selecting previously unselected package libgomp1:arm64. 232s Preparing to unpack .../010-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libsuitesparseconfig7:arm64. 232s Preparing to unpack .../011-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_arm64.deb ... 232s Unpacking libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 232s Selecting previously unselected package libamd3:arm64. 232s Preparing to unpack .../012-libamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 232s Unpacking libamd3:arm64 (1:7.8.3+dfsg-3) ... 232s Selecting previously unselected package libasan8:arm64. 232s Preparing to unpack .../013-libasan8_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libblas3:arm64. 232s Preparing to unpack .../014-libblas3_3.12.1-2_arm64.deb ... 232s Unpacking libblas3:arm64 (3.12.1-2) ... 232s Selecting previously unselected package libitm1:arm64. 232s Preparing to unpack .../015-libitm1_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package liblsan0:arm64. 232s Preparing to unpack .../016-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libtsan2:arm64. 232s Preparing to unpack .../017-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libubsan1:arm64. 232s Preparing to unpack .../018-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 232s Selecting previously unselected package libhwasan0:arm64. 232s Preparing to unpack .../019-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 232s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 233s Selecting previously unselected package libgcc-14-dev:arm64. 233s Preparing to unpack .../020-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 233s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 233s Selecting previously unselected package libstdc++-14-dev:arm64. 233s Preparing to unpack .../021-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 233s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 233s Selecting previously unselected package libboost1.83-dev:arm64. 233s Preparing to unpack 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.../027-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 236s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 236s Selecting previously unselected package libcairo2:arm64. 236s Preparing to unpack .../028-libcairo2_1.18.2-2_arm64.deb ... 236s Unpacking libcairo2:arm64 (1.18.2-2) ... 236s Selecting previously unselected package libcolamd3:arm64. 236s Preparing to unpack .../029-libcolamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 236s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 236s Selecting previously unselected package libdatrie1:arm64. 236s Preparing to unpack .../030-libdatrie1_0.2.13-3build1_arm64.deb ... 236s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 236s Selecting previously unselected package libdeflate0:arm64. 236s Preparing to unpack .../031-libdeflate0_1.23-1_arm64.deb ... 236s Unpacking libdeflate0:arm64 (1.23-1) ... 236s Selecting previously unselected package libgfortran5:arm64. 236s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 236s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 236s Selecting previously unselected package libltdl7:arm64. 236s Preparing to unpack .../033-libltdl7_2.5.4-4_arm64.deb ... 236s Unpacking libltdl7:arm64 (2.5.4-4) ... 236s Selecting previously unselected package libglpk40:arm64. 236s Preparing to unpack .../034-libglpk40_5.0-1build2_arm64.deb ... 236s Unpacking libglpk40:arm64 (5.0-1build2) ... 236s Selecting previously unselected package libgraphite2-3:arm64. 236s Preparing to unpack .../035-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 236s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 236s Selecting previously unselected package libharfbuzz0b:arm64. 236s Preparing to unpack .../036-libharfbuzz0b_10.2.0-1_arm64.deb ... 236s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 236s Selecting previously unselected package libsz2:arm64. 236s Preparing to unpack .../037-libsz2_1.1.3-1_arm64.deb ... 236s Unpacking libsz2:arm64 (1.1.3-1) ... 236s Selecting previously unselected package libhdf5-310:arm64. 236s Preparing to unpack .../038-libhdf5-310_1.14.5+repack-3_arm64.deb ... 236s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 236s Selecting previously unselected package libhdf5-hl-310:arm64. 236s Preparing to unpack .../039-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 236s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 236s Selecting previously unselected package x11-common. 236s Preparing to unpack .../040-x11-common_1%3a7.7+23ubuntu3_all.deb ... 236s Unpacking x11-common (1:7.7+23ubuntu3) ... 236s Selecting previously unselected package libice6:arm64. 236s Preparing to unpack .../041-libice6_2%3a1.1.1-1_arm64.deb ... 236s Unpacking libice6:arm64 (2:1.1.1-1) ... 237s Selecting previously unselected package libjpeg-turbo8:arm64. 237s Preparing to unpack .../042-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 237s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 237s Selecting previously unselected package libjpeg8:arm64. 237s Preparing to unpack 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previously unselected package libjs-highlight.js. 237s Preparing to unpack .../049-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 237s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 237s Selecting previously unselected package libjs-jquery. 237s Preparing to unpack .../050-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 237s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 237s Selecting previously unselected package libjs-jquery-datatables. 237s Preparing to unpack .../051-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 237s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 237s Selecting previously unselected package libjs-sifter.js. 237s Preparing to unpack .../052-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 237s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 237s Selecting previously unselected package libjs-microplugin.js. 237s Preparing to unpack .../053-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 237s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 237s Selecting previously unselected package libjs-jquery-selectize.js. 237s Preparing to unpack .../054-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 237s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 238s Selecting previously unselected package libjs-jquery-ui. 238s Preparing to unpack .../055-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 238s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 238s Selecting previously unselected package libjs-json. 238s Preparing to unpack .../056-libjs-json_0~20221030+~1.0.8-1_all.deb ... 238s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 238s Selecting previously unselected package libjs-prettify. 238s Preparing to unpack .../057-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 238s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 238s Selecting previously unselected package liblapack3:arm64. 238s Preparing to unpack .../058-liblapack3_3.12.1-2_arm64.deb ... 238s Unpacking liblapack3:arm64 (3.12.1-2) ... 238s Selecting previously unselected package liblerc4:arm64. 238s Preparing to unpack .../059-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 238s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 238s Selecting previously unselected package liblua5.4-0:arm64. 238s Preparing to unpack .../060-liblua5.4-0_5.4.7-1_arm64.deb ... 238s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 238s Selecting previously unselected package libnetcdf22:arm64. 238s Preparing to unpack .../061-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 238s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 238s Selecting previously unselected package libthai-data. 238s Preparing to unpack .../062-libthai-data_0.1.29-2build1_all.deb ... 238s Unpacking libthai-data (0.1.29-2build1) ... 238s Selecting previously unselected package libthai0:arm64. 238s Preparing to unpack .../063-libthai0_0.1.29-2build1_arm64.deb ... 238s Unpacking libthai0:arm64 (0.1.29-2build1) ... 238s Selecting previously unselected package libpango-1.0-0:arm64. 238s Preparing to unpack .../064-libpango-1.0-0_1.56.2-1_arm64.deb ... 238s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 238s Selecting previously unselected package libpangoft2-1.0-0:arm64. 238s Preparing to unpack .../065-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 238s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 238s Selecting previously unselected package libpangocairo-1.0-0:arm64. 238s Preparing to unpack .../066-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 238s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 238s Selecting previously unselected package libpaper2:arm64. 238s Preparing to unpack .../067-libpaper2_2.2.5-0.3_arm64.deb ... 238s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 238s Selecting previously unselected package libpaper-utils. 239s Preparing to unpack .../068-libpaper-utils_2.2.5-0.3_arm64.deb ... 239s Unpacking libpaper-utils (2.2.5-0.3) ... 239s Selecting previously unselected package libsharpyuv0:arm64. 239s Preparing to unpack .../069-libsharpyuv0_1.5.0-0.1_arm64.deb ... 239s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 239s Selecting previously unselected package libsm6:arm64. 239s Preparing to unpack .../070-libsm6_2%3a1.2.4-1_arm64.deb ... 239s Unpacking libsm6:arm64 (2:1.2.4-1) ... 239s Selecting previously unselected package libtcl8.6:arm64. 239s Preparing to unpack .../071-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 239s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 239s Selecting previously unselected package libjbig0:arm64. 239s Preparing to unpack .../072-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 239s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 239s Selecting previously unselected package libwebp7:arm64. 239s Preparing to unpack .../073-libwebp7_1.5.0-0.1_arm64.deb ... 239s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 239s Selecting previously unselected package libtiff6:arm64. 239s Preparing to unpack .../074-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 239s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 239s Selecting previously unselected package libxft2:arm64. 239s Preparing to unpack .../075-libxft2_2.3.6-1build1_arm64.deb ... 239s Unpacking libxft2:arm64 (2.3.6-1build1) ... 239s Selecting previously unselected package libxss1:arm64. 239s Preparing to unpack .../076-libxss1_1%3a1.2.3-1build3_arm64.deb ... 239s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 239s Selecting previously unselected package libtk8.6:arm64. 239s Preparing to unpack .../077-libtk8.6_8.6.16-1_arm64.deb ... 239s Unpacking libtk8.6:arm64 (8.6.16-1) ... 239s Selecting previously unselected package libxt6t64:arm64. 239s Preparing to unpack .../078-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 239s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 239s Selecting previously unselected package zip. 239s Preparing to unpack .../079-zip_3.0-14ubuntu2_arm64.deb ... 239s Unpacking zip (3.0-14ubuntu2) ... 239s Selecting previously unselected package unzip. 239s Preparing to unpack .../080-unzip_6.0-28ubuntu6_arm64.deb ... 239s Unpacking unzip (6.0-28ubuntu6) ... 239s Selecting previously unselected package xdg-utils. 239s Preparing to unpack .../081-xdg-utils_1.2.1-2ubuntu1_all.deb ... 239s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 239s Selecting previously unselected package r-base-core. 239s Preparing to unpack .../082-r-base-core_4.4.3-1_arm64.deb ... 240s Unpacking r-base-core (4.4.3-1) ... 240s Selecting previously unselected package r-cran-littler. 240s Preparing to unpack .../083-r-cran-littler_0.3.20-2_arm64.deb ... 240s Unpacking r-cran-littler (0.3.20-2) ... 240s Selecting previously unselected package littler. 240s Preparing to unpack .../084-littler_0.3.20-2_all.deb ... 240s Unpacking littler (0.3.20-2) ... 240s Selecting previously unselected package node-bootstrap-sass. 240s Preparing to unpack .../085-node-bootstrap-sass_3.4.3-2_all.deb ... 240s Unpacking node-bootstrap-sass (3.4.3-2) ... 240s Selecting previously unselected package node-html5shiv. 240s Preparing to unpack .../086-node-html5shiv_3.7.3+dfsg-5_all.deb ... 240s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 240s Selecting previously unselected package node-normalize.css. 240s Preparing to unpack .../087-node-normalize.css_8.0.1-5_all.deb ... 240s Unpacking node-normalize.css (8.0.1-5) ... 240s Selecting previously unselected package pandoc-data. 240s Preparing to unpack .../088-pandoc-data_3.1.11.1-3build1_all.deb ... 240s Unpacking pandoc-data (3.1.11.1-3build1) ... 240s Selecting previously unselected package pandoc. 240s Preparing to unpack .../089-pandoc_3.1.11.1+ds-2_arm64.deb ... 240s Unpacking pandoc (3.1.11.1+ds-2) ... 242s Selecting previously unselected package r-bioc-biocgenerics. 242s Preparing to unpack .../090-r-bioc-biocgenerics_0.52.0-2_all.deb ... 242s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 242s Selecting previously unselected package r-bioc-s4vectors. 242s Preparing to unpack .../091-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 242s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 242s Selecting previously unselected package r-bioc-iranges. 242s Preparing to unpack .../092-r-bioc-iranges_2.40.1-2_arm64.deb ... 242s Unpacking r-bioc-iranges (2.40.1-2) ... 242s Selecting previously unselected package zlib1g-dev:arm64. 242s Preparing to unpack .../093-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 242s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 242s Selecting previously unselected package r-bioc-zlibbioc. 242s Preparing to unpack .../094-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 242s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 242s Selecting previously unselected package r-bioc-xvector. 242s Preparing to unpack .../095-r-bioc-xvector_0.46.0-2_arm64.deb ... 242s Unpacking r-bioc-xvector (0.46.0-2) ... 242s Selecting previously unselected package r-cran-curl. 242s Preparing to unpack .../096-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 242s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 242s Selecting previously unselected package r-cran-jsonlite. 242s Preparing to unpack .../097-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 242s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 242s Selecting previously unselected package r-cran-mime. 242s Preparing to unpack .../098-r-cran-mime_0.12-2_arm64.deb ... 242s Unpacking r-cran-mime (0.12-2) ... 242s Selecting previously unselected package r-cran-sys. 242s Preparing to unpack .../099-r-cran-sys_3.4.3-1_arm64.deb ... 242s Unpacking r-cran-sys (3.4.3-1) ... 242s Selecting previously unselected package r-cran-askpass. 243s Preparing to unpack .../100-r-cran-askpass_1.2.1-1_arm64.deb ... 243s Unpacking r-cran-askpass (1.2.1-1) ... 243s Selecting previously unselected package r-cran-openssl. 243s Preparing to unpack .../101-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 243s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 243s Selecting previously unselected package r-cran-r6. 243s Preparing to unpack .../102-r-cran-r6_2.6.1-1_all.deb ... 243s Unpacking r-cran-r6 (2.6.1-1) ... 243s Selecting previously unselected package r-cran-httr. 243s Preparing to unpack .../103-r-cran-httr_1.4.7+dfsg-1_all.deb ... 243s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 243s Selecting previously unselected package r-bioc-ucsc.utils. 243s Preparing to unpack .../104-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 243s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 243s Selecting previously unselected package r-bioc-genomeinfodbdata. 243s Preparing to unpack .../105-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 243s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 243s Selecting previously unselected package r-bioc-genomeinfodb. 243s Preparing to unpack .../106-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 243s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 243s Selecting previously unselected package r-cran-crayon. 243s Preparing to unpack .../107-r-cran-crayon_1.5.3-1_all.deb ... 243s Unpacking r-cran-crayon (1.5.3-1) ... 243s Selecting previously unselected package r-bioc-biostrings. 243s Preparing to unpack .../108-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 243s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 243s Selecting previously unselected package r-cran-base64enc. 243s Preparing to unpack .../109-r-cran-base64enc_0.1-3-3_arm64.deb ... 243s Unpacking r-cran-base64enc (0.1-3-3) ... 243s Selecting previously unselected package r-cran-bh. 243s Preparing to unpack .../110-r-cran-bh_1.84.0-1_all.deb ... 243s Unpacking r-cran-bh (1.84.0-1) ... 243s Selecting previously unselected package r-cran-bigmemory.sri. 243s Preparing to unpack .../111-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 243s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 243s Selecting previously unselected package r-cran-pkgkitten. 244s Preparing to unpack .../112-r-cran-pkgkitten_0.2.4-1_all.deb ... 244s Unpacking r-cran-pkgkitten (0.2.4-1) ... 244s Selecting previously unselected package r-cran-rcpp. 244s Preparing to unpack .../113-r-cran-rcpp_1.0.14-1_arm64.deb ... 244s Unpacking r-cran-rcpp (1.0.14-1) ... 244s Selecting previously unselected package r-cran-uuid. 244s Preparing to unpack .../114-r-cran-uuid_1.2-1-1_arm64.deb ... 244s Unpacking r-cran-uuid (1.2-1-1) ... 244s Selecting previously unselected package r-cran-bigmemory. 244s Preparing to unpack .../115-r-cran-bigmemory_4.6.4-1ubuntu1_arm64.deb ... 244s Unpacking r-cran-bigmemory (4.6.4-1ubuntu1) ... 244s Selecting previously unselected package r-cran-bio3d. 244s Preparing to unpack .../116-r-cran-bio3d_2.4-5-1_arm64.deb ... 244s Unpacking r-cran-bio3d (2.4-5-1) ... 244s Selecting previously unselected package r-cran-bitops. 244s Preparing to unpack .../117-r-cran-bitops_1.0-9-1_arm64.deb ... 244s Unpacking r-cran-bitops (1.0-9-1) ... 244s Selecting previously unselected package r-cran-brio. 244s Preparing to unpack .../118-r-cran-brio_1.1.5-1_arm64.deb ... 244s Unpacking r-cran-brio (1.1.5-1) ... 244s Selecting previously unselected package r-cran-rlang. 244s Preparing to unpack .../119-r-cran-rlang_1.1.5-1_arm64.deb ... 244s Unpacking r-cran-rlang (1.1.5-1) ... 244s Selecting previously unselected package r-cran-fastmap. 244s Preparing to unpack .../120-r-cran-fastmap_1.2.0-1_arm64.deb ... 244s Unpacking r-cran-fastmap (1.2.0-1) ... 244s Selecting previously unselected package r-cran-cachem. 244s Preparing to unpack .../121-r-cran-cachem_1.1.0-1_arm64.deb ... 244s Unpacking r-cran-cachem (1.1.0-1) ... 244s Selecting previously unselected package r-cran-digest. 244s Preparing to unpack .../122-r-cran-digest_0.6.37-1_arm64.deb ... 244s Unpacking r-cran-digest (0.6.37-1) ... 244s Selecting previously unselected package r-cran-htmltools. 244s Preparing to unpack .../123-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 244s Unpacking r-cran-htmltools (0.5.8.1-1) ... 244s Selecting previously unselected package r-cran-jquerylib. 244s Preparing to unpack .../124-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 244s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 244s Selecting previously unselected package r-cran-cli. 245s Preparing to unpack .../125-r-cran-cli_3.6.4-1_arm64.deb ... 245s Unpacking r-cran-cli (3.6.4-1) ... 245s Selecting previously unselected package r-cran-glue. 245s Preparing to unpack .../126-r-cran-glue_1.8.0-1_arm64.deb ... 245s Unpacking r-cran-glue (1.8.0-1) ... 245s Selecting previously unselected package r-cran-lifecycle. 245s Preparing to unpack .../127-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 245s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 245s Selecting previously unselected package r-cran-memoise. 245s Preparing to unpack .../128-r-cran-memoise_2.0.1-1_all.deb ... 245s Unpacking r-cran-memoise (2.0.1-1) ... 245s Selecting previously unselected package r-cran-fs. 245s Preparing to unpack .../129-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 245s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 245s Selecting previously unselected package r-cran-rappdirs. 245s Preparing to unpack .../130-r-cran-rappdirs_0.3.3-1_arm64.deb ... 245s Unpacking r-cran-rappdirs (0.3.3-1) ... 245s Selecting previously unselected package r-cran-sass. 245s Preparing to unpack .../131-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 245s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 245s Selecting previously unselected package r-cran-bslib. 245s Preparing to unpack .../132-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 245s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 245s Selecting previously unselected package r-cran-ps. 245s Preparing to unpack .../133-r-cran-ps_1.9.0-1_arm64.deb ... 245s Unpacking r-cran-ps (1.9.0-1) ... 245s Selecting previously unselected package r-cran-processx. 245s Preparing to unpack .../134-r-cran-processx_3.8.6-1_arm64.deb ... 245s Unpacking r-cran-processx (3.8.6-1) ... 245s Selecting previously unselected package r-cran-callr. 245s Preparing to unpack .../135-r-cran-callr_3.7.6-1_all.deb ... 245s Unpacking r-cran-callr (3.7.6-1) ... 245s Selecting previously unselected package r-cran-commonmark. 245s Preparing to unpack .../136-r-cran-commonmark_1.9.2-2_arm64.deb ... 245s Unpacking r-cran-commonmark (1.9.2-2) ... 245s Selecting previously unselected package r-cran-cpp11. 246s Preparing to unpack .../137-r-cran-cpp11_0.5.2-1_all.deb ... 246s Unpacking r-cran-cpp11 (0.5.2-1) ... 246s Selecting previously unselected package r-cran-desc. 246s Preparing to unpack .../138-r-cran-desc_1.4.3-1_all.deb ... 246s Unpacking r-cran-desc (1.4.3-1) ... 246s Selecting previously unselected package r-cran-diffobj. 246s Preparing to unpack .../139-r-cran-diffobj_0.3.5-1_arm64.deb ... 246s Unpacking r-cran-diffobj (0.3.5-1) ... 246s Selecting previously unselected package r-cran-evaluate. 246s Preparing to unpack .../140-r-cran-evaluate_1.0.3-1_all.deb ... 246s Unpacking r-cran-evaluate (1.0.3-1) ... 246s Selecting previously unselected package r-cran-fontawesome. 246s Preparing to unpack .../141-r-cran-fontawesome_0.5.3-1_all.deb ... 246s Unpacking r-cran-fontawesome (0.5.3-1) ... 246s Selecting previously unselected package r-cran-xfun. 246s Preparing to unpack .../142-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 246s Unpacking r-cran-xfun (0.51+dfsg-1) ... 246s Selecting previously unselected package r-cran-highr. 246s Preparing to unpack .../143-r-cran-highr_0.11+dfsg-1_all.deb ... 246s Unpacking r-cran-highr (0.11+dfsg-1) ... 246s Selecting previously unselected package r-cran-later. 246s Preparing to unpack .../144-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 246s Unpacking r-cran-later (1.4.1+dfsg-1) ... 246s Selecting previously unselected package r-cran-magrittr. 246s Preparing to unpack .../145-r-cran-magrittr_2.0.3-1_arm64.deb ... 246s Unpacking r-cran-magrittr (2.0.3-1) ... 246s Selecting previously unselected package r-cran-promises. 246s Preparing to unpack .../146-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 246s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 246s Selecting previously unselected package r-cran-httpuv. 246s Preparing to unpack .../147-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 246s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 246s Selecting previously unselected package r-cran-lattice. 246s Preparing to unpack .../148-r-cran-lattice_0.22-6-1_arm64.deb ... 246s Unpacking r-cran-lattice (0.22-6-1) ... 247s Selecting previously unselected package r-cran-matrix. 247s Preparing to unpack .../149-r-cran-matrix_1.7-3-1_arm64.deb ... 247s Unpacking r-cran-matrix (1.7-3-1) ... 247s Selecting previously unselected package r-cran-pkgconfig. 247s Preparing to unpack .../150-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 247s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 247s Selecting previously unselected package r-cran-vctrs. 247s Preparing to unpack .../151-r-cran-vctrs_0.6.5-1_arm64.deb ... 247s Unpacking r-cran-vctrs (0.6.5-1) ... 247s Selecting previously unselected package r-cran-igraph. 247s Preparing to unpack .../152-r-cran-igraph_2.1.4-1_arm64.deb ... 247s Unpacking r-cran-igraph (2.1.4-1) ... 247s Selecting previously unselected package r-cran-yaml. 247s Preparing to unpack .../153-r-cran-yaml_2.3.10-1_arm64.deb ... 247s Unpacking r-cran-yaml (2.3.10-1) ... 247s Selecting previously unselected package libjs-mathjax. 247s Preparing to unpack .../154-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 247s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 248s Selecting previously unselected package r-cran-knitr. 248s Preparing to unpack .../155-r-cran-knitr_1.49+dfsg-1_all.deb ... 248s Unpacking r-cran-knitr (1.49+dfsg-1) ... 248s Selecting previously unselected package r-cran-ncdf4. 248s Preparing to unpack .../156-r-cran-ncdf4_1.23-1build1_arm64.deb ... 248s Unpacking r-cran-ncdf4 (1.23-1build1) ... 248s Selecting previously unselected package r-cran-pkgbuild. 248s Preparing to unpack .../157-r-cran-pkgbuild_1.4.6-1_all.deb ... 248s Unpacking r-cran-pkgbuild (1.4.6-1) ... 248s Selecting previously unselected package r-cran-rprojroot. 248s Preparing to unpack .../158-r-cran-rprojroot_2.0.4-2_all.deb ... 248s Unpacking r-cran-rprojroot (2.0.4-2) ... 248s Selecting previously unselected package r-cran-withr. 248s Preparing to unpack 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Selecting previously unselected package r-cran-xtable. 249s Preparing to unpack .../165-r-cran-xtable_1%3a1.8-4-2_all.deb ... 249s Unpacking r-cran-xtable (1:1.8-4-2) ... 249s Selecting previously unselected package r-cran-sourcetools. 249s Preparing to unpack .../166-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 249s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 249s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 249s Preparing to unpack .../167-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 249s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 249s Selecting previously unselected package r-cran-shiny. 249s Preparing to unpack .../168-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 249s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 249s Selecting previously unselected package r-cran-rmarkdown. 249s Preparing to unpack .../169-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 249s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 249s Selecting previously unselected package r-cran-waldo. 249s Preparing to unpack .../170-r-cran-waldo_0.6.1-2_all.deb ... 249s Unpacking r-cran-waldo (0.6.1-2) ... 249s Selecting previously unselected package r-cran-testthat. 249s Preparing to unpack .../171-r-cran-testthat_3.2.3-1_arm64.deb ... 249s Unpacking r-cran-testthat (3.2.3-1) ... 249s Selecting previously unselected package r-cran-xml. 249s Preparing to unpack .../172-r-cran-xml_3.99-0.18-1_arm64.deb ... 249s Unpacking r-cran-xml (3.99-0.18-1) ... 249s Setting up libjs-json (0~20221030+~1.0.8-1) ... 249s Setting up javascript-common (12) ... 249s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 249s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 249s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 249s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 249s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 249s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 249s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 249s Setting up 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(1.5.3-1) ... 253s Setting up r-cran-sourcetools (0.1.7-1-1) ... 253s Setting up r-cran-lattice (0.22-6-1) ... 253s Setting up r-cran-ps (1.9.0-1) ... 253s Setting up r-cran-xml (3.99-0.18-1) ... 253s Setting up r-cran-commonmark (1.9.2-2) ... 253s Setting up r-cran-r6 (2.6.1-1) ... 253s Setting up r-cran-pkgkitten (0.2.4-1) ... 253s Setting up r-cran-magrittr (2.0.3-1) ... 253s Setting up r-cran-rappdirs (0.3.3-1) ... 253s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 253s Setting up r-cran-littler (0.3.20-2) ... 253s Setting up r-cran-bh (1.84.0-1) ... 253s Setting up r-cran-ncdf4 (1.23-1build1) ... 253s Setting up r-cran-fs (1.6.5+dfsg-1) ... 253s Setting up r-cran-rcpp (1.0.14-1) ... 253s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 253s Setting up r-cran-brio (1.1.5-1) ... 253s Setting up r-cran-diffobj (0.3.5-1) ... 253s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 253s Setting up r-bioc-biocgenerics (0.52.0-2) ... 253s Setting up r-cran-rlang (1.1.5-1) ... 253s Setting up littler (0.3.20-2) ... 253s Setting up r-cran-bio3d (2.4-5-1) ... 253s Setting up r-cran-uuid (1.2-1-1) ... 253s Setting up r-cran-xfun (0.51+dfsg-1) ... 253s Setting up r-cran-sys (3.4.3-1) ... 253s Setting up r-cran-withr (3.0.2+dfsg-1) ... 253s Setting up r-cran-processx (3.8.6-1) ... 253s Setting up r-cran-mime (0.12-2) ... 253s Setting up r-cran-praise (1.0.0-4build1) ... 253s Setting up r-cran-base64enc (0.1-3-3) ... 253s Setting up r-cran-digest (0.6.37-1) ... 253s Setting up r-cran-yaml (2.3.10-1) ... 253s Setting up r-cran-evaluate (1.0.3-1) ... 253s Setting up r-cran-bigmemory (4.6.4-1ubuntu1) ... 253s Setting up r-cran-highr (0.11+dfsg-1) ... 253s Setting up r-cran-glue (1.8.0-1) ... 253s Setting up r-cran-xtable (1:1.8-4-2) ... 253s Setting up r-cran-cli (3.6.4-1) ... 253s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 253s Setting up r-cran-bitops (1.0-9-1) ... 253s Setting up r-cran-rprojroot (2.0.4-2) ... 253s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 253s Setting up r-cran-askpass (1.2.1-1) ... 253s Setting up r-cran-fastmap (1.2.0-1) ... 253s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 253s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 253s Setting up r-cran-cpp11 (0.5.2-1) ... 253s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 253s Setting up r-cran-waldo (0.6.1-2) ... 253s Setting up r-cran-later (1.4.1+dfsg-1) ... 253s Setting up r-cran-matrix (1.7-3-1) ... 253s Setting up r-cran-htmltools (0.5.8.1-1) ... 253s Setting up r-cran-tinytex (0.56-1) ... 253s Setting up r-cran-knitr (1.49+dfsg-1) ... 253s Setting up r-cran-cachem (1.1.0-1) ... 253s Setting up r-cran-sass (0.4.9+dfsg-1) ... 253s Setting up r-bioc-iranges (2.40.1-2) ... 253s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 253s Setting up r-cran-vctrs (0.6.5-1) ... 253s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 253s Setting up r-cran-callr (3.7.6-1) ... 253s Setting up r-cran-desc (1.4.3-1) ... 253s Setting up r-cran-fontawesome (0.5.3-1) ... 253s Setting up r-cran-igraph (2.1.4-1) ... 253s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 253s Setting up r-cran-httr (1.4.7+dfsg-1) ... 253s Setting up r-cran-memoise (2.0.1-1) ... 253s Setting up r-cran-promises (1.3.2+dfsg-1) ... 253s Setting up r-bioc-xvector (0.46.0-2) ... 253s Setting up r-cran-pkgbuild (1.4.6-1) ... 253s Setting up r-cran-pkgload (1.4.0-1) ... 253s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 253s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 253s Setting up r-cran-testthat (3.2.3-1) ... 253s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 253s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 253s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 253s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 253s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 253s Processing triggers for libc-bin (2.41-1ubuntu2) ... 253s Processing triggers for man-db (2.13.0-1) ... 255s Processing triggers for install-info (7.1.1-1) ... 256s autopkgtest [15:24:02]: test run-unit-test: [----------------------- 257s BEGIN TEST testthat.R 257s 257s R version 4.4.3 (2025-02-28) -- "Trophy Case" 257s Copyright (C) 2025 The R Foundation for Statistical Computing 257s Platform: aarch64-unknown-linux-gnu 257s 257s R is free software and comes with ABSOLUTELY NO WARRANTY. 257s You are welcome to redistribute it under certain conditions. 257s Type 'license()' or 'licence()' for distribution details. 257s 257s R is a collaborative project with many contributors. 257s Type 'contributors()' for more information and 257s 'citation()' on how to cite R or R packages in publications. 257s 257s Type 'demo()' for some demos, 'help()' for on-line help, or 257s 'help.start()' for an HTML browser interface to help. 257s Type 'q()' to quit R. 257s 257s > library(testthat) 257s > test_check("bio3d") 257s Loading required package: bio3d 267s [ FAIL 0 | WARN 0 | SKIP 29 | PASS 174 ] 267s 267s == Skipped tests (29) ========================================================== 268s * On CRAN (29): 'test-aanma.R:5:3', 'test-aanma.pdbs.R:10:3', 268s 'test-clean.pdb.R:24:3', 'test-cmap.R:20:3', 'test-cna.R:5:3', 268s 'test-core.find.R:5:3', 'test-dccm.R:27:3', 'test-dccm.R:47:3', 268s 'test-dssp.R:4:3', 'test-fitting.R:64:3', 'test-fitting.R:91:4', 268s 'test-fitting.R:116:4', 'test-get.pdb.R:4:3', 'test-get.pdb.R:24:3', 268s 'test-get.seq.R:4:3', 'test-mol2.R:34:3', 'test-mol2.R:49:3', 268s 'test-mol2.R:82:3', 'test-nma.pdbs.R:5:3', 'test-pdb.annotate.R:5:3', 268s 'test-pdbsplit.R:5:3', 'test-read.all.R:6:3', 'test-read.cif.R:5:3', 268s 'test-read.cif.R:49:3', 'test-read.ncdf.R:4:4', 'test-read.pdb.R:43:3', 268s 'test-read.pdb.R:121:3', 'test-read.pdb.R:141:3', 'test-seqaln.R:5:3' 268s 268s [ FAIL 0 | WARN 0 | SKIP 29 | PASS 174 ] 268s > 268s autopkgtest [15:24:14]: test run-unit-test: -----------------------] 269s run-unit-test PASS 269s autopkgtest [15:24:15]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 269s autopkgtest [15:24:15]: test pkg-r-autopkgtest: preparing testbed 425s autopkgtest [15:26:51]: testbed dpkg architecture: arm64 426s autopkgtest [15:26:52]: testbed apt version: 2.9.33 426s autopkgtest [15:26:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 426s autopkgtest [15:26:52]: testbed release detected to be: plucky 428s autopkgtest [15:26:54]: updating testbed package index (apt update) 428s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 428s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 428s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 429s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 429s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 429s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 429s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 429s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 429s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 429s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 429s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 429s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 429s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 429s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 429s Fetched 1094 kB in 1s (1085 kB/s) 430s Reading package lists... 431s Reading package lists... 431s Building dependency tree... 431s Reading state information... 431s Calculating upgrade... 432s Calculating upgrade... 432s The following packages will be upgraded: 432s python3-jinja2 strace 432s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 432s Need to get 608 kB of archives. 432s After this operation, 11.3 kB of additional disk space will be used. 432s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 433s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 433s Fetched 608 kB in 1s (936 kB/s) 433s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 433s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 433s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 434s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 434s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 434s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 434s Setting up strace (6.13+ds-1ubuntu1) ... 434s Processing triggers for man-db (2.13.0-1) ... 435s Reading package lists... 435s Building dependency tree... 435s Reading state information... 435s Solving dependencies... 436s The following packages will be REMOVED: 436s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 436s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 436s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 436s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 436s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 436s After this operation, 267 MB disk space will be freed. 436s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 436s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 436s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 436s Removing libpython3.12t64:arm64 (3.12.9-1) ... 436s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 436s Removing libnsl2:arm64 (1.3.0-3build3) ... 436s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 436s Removing libunwind8:arm64 (1.6.2-3.1) ... 436s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 437s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 438s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 439s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 439s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 439s /etc/kernel/postrm.d/initramfs-tools: 439s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 439s /etc/kernel/postrm.d/zz-flash-kernel: 439s flash-kernel: Kernel 6.11.0-8-generic has been removed. 439s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 439s /etc/kernel/postrm.d/zz-update-grub: 439s Sourcing file `/etc/default/grub' 439s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 439s Generating grub configuration file ... 439s Found linux image: /boot/vmlinuz-6.14.0-10-generic 439s Found initrd image: /boot/initrd.img-6.14.0-10-generic 440s Warning: os-prober will not be executed to detect other bootable partitions. 440s Systems on them will not be added to the GRUB boot configuration. 440s Check GRUB_DISABLE_OS_PROBER documentation entry. 440s Adding boot menu entry for UEFI Firmware Settings ... 440s done 440s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 440s Processing triggers for libc-bin (2.41-1ubuntu1) ... 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 440s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 440s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 440s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 440s autopkgtest [15:27:06]: upgrading testbed (apt dist-upgrade and autopurge) 440s Reading package lists... 441s Building dependency tree... 441s Reading state information... 442s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 442s Starting 2 pkgProblemResolver with broken count: 0 442s Done 442s Entering ResolveByKeep 443s 443s Calculating upgrade... 443s The following packages will be upgraded: 443s libc-bin libc-dev-bin libc6 libc6-dev locales 443s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s Need to get 9530 kB of archives. 443s After this operation, 0 B of additional disk space will be used. 443s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 444s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 444s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 444s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 444s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 445s Preconfiguring packages ... 445s Fetched 9530 kB in 1s (6943 kB/s) 445s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 445s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 445s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 445s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 445s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 445s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 446s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 446s Setting up libc6:arm64 (2.41-1ubuntu2) ... 446s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 446s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 446s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 446s Setting up libc-bin (2.41-1ubuntu2) ... 446s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 446s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 446s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 446s Setting up locales (2.41-1ubuntu2) ... 447s Generating locales (this might take a while)... 449s en_US.UTF-8... done 449s Generation complete. 449s Setting up libc-dev-bin (2.41-1ubuntu2) ... 449s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 449s Processing triggers for man-db (2.13.0-1) ... 450s Processing triggers for systemd (257.3-1ubuntu3) ... 451s Reading package lists... 451s Building dependency tree... 451s Reading state information... 451s Starting pkgProblemResolver with broken count: 0 451s Starting 2 pkgProblemResolver with broken count: 0 451s Done 452s Solving dependencies... 452s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 453s autopkgtest [15:27:19]: rebooting testbed after setup commands that affected boot 479s Reading package lists... 480s Building dependency tree... 480s Reading state information... 480s Starting pkgProblemResolver with broken count: 0 480s Starting 2 pkgProblemResolver with broken count: 0 480s Done 481s The following NEW packages will be installed: 481s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 481s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 481s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 481s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 481s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 481s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 481s javascript-common libaec0 libamd3 libasan8 libblas-dev libblas3 libboost-dev 481s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1 481s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 481s libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 481s libhdf5-hl-310 libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 481s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 481s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 481s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 481s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 481s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 481s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 481s liblsan0 libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnetcdf22 481s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 481s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 481s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 481s libstdc++-14-dev libsuitesparseconfig7 libsz2 libtcl8.6 libthai-data 481s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 481s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 481s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 481s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 481s r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 481s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-ucsc.utils 481s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc r-cran-bh 481s r-cran-bigmemory r-cran-bigmemory.sri r-cran-bio3d r-cran-bitops r-cran-brio 481s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark 481s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj 481s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 481s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 481s r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 481s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 481s r-cran-memoise r-cran-mime r-cran-ncdf4 r-cran-openssl r-cran-pkgbuild 481s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise 481s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 481s r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 481s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-testthat 481s r-cran-tinytex r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr 481s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils 481s zip zlib1g-dev 481s 0 upgraded, 218 newly installed, 0 to remove and 0 not upgraded. 481s Need to get 267 MB of archives. 481s After this operation, 1003 MB of additional disk space will be used. 481s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 482s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 482s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 482s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 482s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 482s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 482s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 482s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 482s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 482s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 483s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 483s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 483s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 483s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 484s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 484s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 486s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 486s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 486s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 486s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 486s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 486s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 486s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 486s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 486s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 486s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 486s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 486s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 487s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 487s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 487s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 487s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 487s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 487s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 487s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 487s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 487s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 488s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 488s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 488s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 488s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 488s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 488s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 488s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [13.2 kB] 488s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-3 [26.1 kB] 488s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 488s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 488s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 489s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 489s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 489s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 489s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 489s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 489s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 489s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 489s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [18.3 kB] 489s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 489s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 489s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 489s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 489s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB] 489s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 489s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 489s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 489s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 489s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 489s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 489s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 489s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 490s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 490s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 490s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 490s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 490s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 490s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 490s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 490s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 490s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 490s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 490s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 490s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 490s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 490s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 490s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 490s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 490s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 490s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 490s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 490s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 490s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 490s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 490s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 490s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 490s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf22 arm64 1:4.9.3-1 [504 kB] 490s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 491s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 491s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 491s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 491s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 491s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 491s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 491s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 491s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 491s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 491s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 491s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 491s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 491s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 491s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 492s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 492s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 492s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 492s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 492s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 492s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 492s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 492s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 492s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 492s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 492s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 492s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 492s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 492s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 494s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 494s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 494s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 494s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 494s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 494s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 494s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 496s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 496s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 496s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 496s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 496s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 496s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 496s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 496s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 496s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 496s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 496s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 496s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 496s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 496s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 496s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 496s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 496s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 496s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 496s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 496s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 496s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 497s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 497s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 497s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 498s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 498s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 498s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 498s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 498s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 499s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB] 499s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bigmemory arm64 4.6.4-1ubuntu1 [458 kB] 499s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bio3d arm64 2.4-5-1 [3013 kB] 499s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 499s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 499s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 499s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 499s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 499s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 499s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 499s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 499s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 499s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 499s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 499s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 499s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 499s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 499s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 499s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 500s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 500s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 500s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 500s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 500s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 500s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 500s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 500s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 500s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 500s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 500s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 500s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 500s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 500s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 500s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 500s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 500s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 501s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 501s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 501s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB] 501s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 501s Get:200 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 502s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 502s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ncdf4 arm64 1.23-1build1 [277 kB] 502s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 502s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 502s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 502s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 502s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 502s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 503s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 503s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 503s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 503s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 503s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 503s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 503s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 504s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 504s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 504s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 505s Preconfiguring packages ... 505s Fetched 267 MB in 23s (11.4 MB/s) 505s Selecting previously unselected package libisl23:arm64. 505s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 505s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 505s Unpacking libisl23:arm64 (0.27-1) ... 505s Selecting previously unselected package libmpc3:arm64. 505s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 505s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 505s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 505s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 505s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 506s Selecting previously unselected package cpp-14. 506s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 506s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 506s Selecting previously unselected package cpp-aarch64-linux-gnu. 506s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 506s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 506s Selecting previously unselected package cpp. 506s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 506s Unpacking cpp (4:14.2.0-1ubuntu1) ... 506s Selecting previously unselected package libcc1-0:arm64. 506s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libgomp1:arm64. 506s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libitm1:arm64. 506s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libasan8:arm64. 506s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package liblsan0:arm64. 506s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libtsan2:arm64. 506s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libubsan1:arm64. 506s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libhwasan0:arm64. 506s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 506s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 506s Selecting previously unselected package libgcc-14-dev:arm64. 506s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 506s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 506s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 506s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 506s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 507s Selecting previously unselected package gcc-14. 507s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 507s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 507s Selecting previously unselected package gcc-aarch64-linux-gnu. 507s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 507s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 507s Selecting previously unselected package gcc. 507s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 507s Unpacking gcc (4:14.2.0-1ubuntu1) ... 507s Selecting previously unselected package libstdc++-14-dev:arm64. 507s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 507s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 507s Selecting previously unselected package g++-14-aarch64-linux-gnu. 507s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 507s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 507s Selecting previously unselected package g++-14. 507s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 507s Unpacking g++-14 (14.2.0-17ubuntu3) ... 507s Selecting previously unselected package g++-aarch64-linux-gnu. 507s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 507s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 507s Selecting previously unselected package g++. 507s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 507s Unpacking g++ (4:14.2.0-1ubuntu1) ... 507s Selecting previously unselected package build-essential. 507s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 507s Unpacking build-essential (12.10ubuntu1) ... 507s Selecting previously unselected package dctrl-tools. 507s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 508s Unpacking dctrl-tools (2.24-3build3) ... 508s Selecting previously unselected package fonts-dejavu-mono. 508s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 508s Unpacking fonts-dejavu-mono (2.37-8) ... 508s Selecting previously unselected package fonts-dejavu-core. 508s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 508s Unpacking fonts-dejavu-core (2.37-8) ... 508s Selecting previously unselected package fontconfig-config. 508s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 508s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 508s Selecting previously unselected package libfontconfig1:arm64. 508s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 508s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 508s Selecting previously unselected package fontconfig. 508s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 508s Unpacking fontconfig (2.15.0-2ubuntu1) ... 508s Selecting previously unselected package fonts-font-awesome. 508s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 508s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 508s Selecting previously unselected package fonts-glyphicons-halflings. 508s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 508s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 508s Selecting previously unselected package fonts-mathjax. 508s Preparing to unpack .../033-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 508s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 508s Selecting previously unselected package libgfortran5:arm64. 508s Preparing to unpack .../034-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 508s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 508s Selecting previously unselected package libgfortran-14-dev:arm64. 508s Preparing to unpack .../035-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 508s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 508s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 508s Preparing to unpack .../036-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 508s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 509s Selecting previously unselected package gfortran-14. 509s Preparing to unpack .../037-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 509s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 509s Selecting previously unselected package gfortran-aarch64-linux-gnu. 509s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 509s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 509s Selecting previously unselected package gfortran. 509s Preparing to unpack .../039-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 509s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 509s Selecting previously unselected package icu-devtools. 509s Preparing to unpack .../040-icu-devtools_76.1-1ubuntu2_arm64.deb ... 509s Unpacking icu-devtools (76.1-1ubuntu2) ... 509s Selecting previously unselected package javascript-common. 509s Preparing to unpack .../041-javascript-common_12_all.deb ... 509s Unpacking javascript-common (12) ... 509s Selecting previously unselected package libaec0:arm64. 509s Preparing to unpack .../042-libaec0_1.1.3-1_arm64.deb ... 509s Unpacking libaec0:arm64 (1.1.3-1) ... 509s Selecting previously unselected package libsuitesparseconfig7:arm64. 509s Preparing to unpack .../043-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_arm64.deb ... 509s Unpacking libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 509s Selecting previously unselected package libamd3:arm64. 509s Preparing to unpack .../044-libamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 509s Unpacking libamd3:arm64 (1:7.8.3+dfsg-3) ... 509s Selecting previously unselected package libblas3:arm64. 509s Preparing to unpack .../045-libblas3_3.12.1-2_arm64.deb ... 509s Unpacking libblas3:arm64 (3.12.1-2) ... 509s Selecting previously unselected package libblas-dev:arm64. 509s Preparing to unpack .../046-libblas-dev_3.12.1-2_arm64.deb ... 509s Unpacking libblas-dev:arm64 (3.12.1-2) ... 509s Selecting previously unselected package libboost1.83-dev:arm64. 509s Preparing to unpack .../047-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 509s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 511s Selecting previously unselected package libboost-dev:arm64. 511s Preparing to unpack .../048-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 511s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 511s Selecting previously unselected package libbz2-dev:arm64. 511s Preparing to unpack .../049-libbz2-dev_1.0.8-6_arm64.deb ... 511s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 511s Selecting previously unselected package libpixman-1-0:arm64. 511s Preparing to unpack .../050-libpixman-1-0_0.44.0-3_arm64.deb ... 511s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 511s Selecting previously unselected package libxcb-render0:arm64. 511s Preparing to unpack .../051-libxcb-render0_1.17.0-2_arm64.deb ... 511s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 511s Selecting previously unselected package libxcb-shm0:arm64. 511s Preparing to unpack .../052-libxcb-shm0_1.17.0-2_arm64.deb ... 511s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 511s Selecting previously unselected package libxrender1:arm64. 511s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 511s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 511s Selecting previously unselected package libcairo2:arm64. 511s Preparing to unpack .../054-libcairo2_1.18.2-2_arm64.deb ... 511s Unpacking libcairo2:arm64 (1.18.2-2) ... 511s Selecting previously unselected package libcolamd3:arm64. 511s Preparing to unpack .../055-libcolamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 511s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 511s Selecting previously unselected package libdatrie1:arm64. 511s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 511s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 511s Selecting previously unselected package libdeflate0:arm64. 511s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 511s Unpacking libdeflate0:arm64 (1.23-1) ... 511s Selecting previously unselected package libdeflate-dev:arm64. 511s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 511s Unpacking libdeflate-dev:arm64 (1.23-1) ... 511s Selecting previously unselected package libltdl7:arm64. 511s Preparing to unpack .../059-libltdl7_2.5.4-4_arm64.deb ... 511s Unpacking libltdl7:arm64 (2.5.4-4) ... 511s Selecting previously unselected package libglpk40:arm64. 511s Preparing to unpack .../060-libglpk40_5.0-1build2_arm64.deb ... 511s Unpacking libglpk40:arm64 (5.0-1build2) ... 511s Selecting previously unselected package libgraphite2-3:arm64. 511s Preparing to unpack .../061-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 511s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 511s Selecting previously unselected package libharfbuzz0b:arm64. 511s Preparing to unpack .../062-libharfbuzz0b_10.2.0-1_arm64.deb ... 511s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 512s Selecting previously unselected package libsz2:arm64. 512s Preparing to unpack .../063-libsz2_1.1.3-1_arm64.deb ... 512s Unpacking libsz2:arm64 (1.1.3-1) ... 512s Selecting previously unselected package libhdf5-310:arm64. 512s Preparing to unpack .../064-libhdf5-310_1.14.5+repack-3_arm64.deb ... 512s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 512s Selecting previously unselected package libhdf5-hl-310:arm64. 512s Preparing to unpack .../065-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 512s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 512s Selecting previously unselected package x11-common. 512s Preparing to unpack .../066-x11-common_1%3a7.7+23ubuntu3_all.deb ... 512s Unpacking x11-common (1:7.7+23ubuntu3) ... 512s Selecting previously unselected package libice6:arm64. 512s Preparing to unpack .../067-libice6_2%3a1.1.1-1_arm64.deb ... 512s Unpacking libice6:arm64 (2:1.1.1-1) ... 512s Selecting previously unselected package libicu-dev:arm64. 512s Preparing to unpack .../068-libicu-dev_76.1-1ubuntu2_arm64.deb ... 512s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 512s Selecting previously unselected package libjpeg-turbo8:arm64. 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liblerc4:arm64. 513s Preparing to unpack .../090-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 513s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 513s Selecting previously unselected package liblua5.4-0:arm64. 513s Preparing to unpack .../091-liblua5.4-0_5.4.7-1_arm64.deb ... 513s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 513s Selecting previously unselected package libncurses-dev:arm64. 514s Preparing to unpack .../092-libncurses-dev_6.5+20250216-2_arm64.deb ... 514s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 514s Selecting previously unselected package libnetcdf22:arm64. 514s Preparing to unpack .../093-libnetcdf22_1%3a4.9.3-1_arm64.deb ... 514s Unpacking libnetcdf22:arm64 (1:4.9.3-1) ... 514s Selecting previously unselected package libthai-data. 514s Preparing to unpack .../094-libthai-data_0.1.29-2build1_all.deb ... 514s Unpacking libthai-data (0.1.29-2build1) ... 514s Selecting previously unselected package libthai0:arm64. 514s Preparing to unpack .../095-libthai0_0.1.29-2build1_arm64.deb ... 514s Unpacking libthai0:arm64 (0.1.29-2build1) ... 514s Selecting previously unselected package libpango-1.0-0:arm64. 514s Preparing to unpack .../096-libpango-1.0-0_1.56.2-1_arm64.deb ... 514s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 514s Selecting previously unselected package libpangoft2-1.0-0:arm64. 514s Preparing to unpack .../097-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 514s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 514s Selecting previously unselected package libpangocairo-1.0-0:arm64. 514s Preparing to unpack .../098-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 514s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 514s Selecting previously unselected package libpaper2:arm64. 514s Preparing to unpack .../099-libpaper2_2.2.5-0.3_arm64.deb ... 514s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 514s Selecting previously unselected package libpaper-utils. 514s Preparing to unpack .../100-libpaper-utils_2.2.5-0.3_arm64.deb ... 514s Unpacking libpaper-utils (2.2.5-0.3) ... 514s Selecting previously unselected package libpcre2-16-0:arm64. 514s Preparing to unpack .../101-libpcre2-16-0_10.45-1_arm64.deb ... 514s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 514s Selecting previously unselected package libpcre2-32-0:arm64. 514s Preparing to unpack .../102-libpcre2-32-0_10.45-1_arm64.deb ... 514s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 514s Selecting previously unselected package libpcre2-posix3:arm64. 514s Preparing to unpack .../103-libpcre2-posix3_10.45-1_arm64.deb ... 514s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 514s Selecting previously unselected package libpcre2-dev:arm64. 514s Preparing to unpack .../104-libpcre2-dev_10.45-1_arm64.deb ... 514s Unpacking libpcre2-dev:arm64 (10.45-1) ... 514s Selecting previously unselected package libpkgconf3:arm64. 514s Preparing to unpack .../105-libpkgconf3_1.8.1-4_arm64.deb ... 514s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 514s Selecting previously unselected package zlib1g-dev:arm64. 514s Preparing to unpack .../106-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 514s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 514s Selecting previously unselected package libpng-dev:arm64. 514s Preparing to unpack .../107-libpng-dev_1.6.47-1_arm64.deb ... 514s Unpacking libpng-dev:arm64 (1.6.47-1) ... 514s Selecting previously unselected package libreadline-dev:arm64. 514s Preparing to unpack .../108-libreadline-dev_8.2-6_arm64.deb ... 514s Unpacking libreadline-dev:arm64 (8.2-6) ... 514s Selecting previously unselected package libsharpyuv0:arm64. 514s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_arm64.deb ... 514s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 515s Selecting previously unselected package libsm6:arm64. 515s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_arm64.deb ... 515s Unpacking libsm6:arm64 (2:1.2.4-1) ... 515s Selecting previously unselected package libtcl8.6:arm64. 515s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 515s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 515s Selecting previously unselected package libjbig0:arm64. 515s Preparing to unpack .../112-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 515s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 515s Selecting previously unselected package libwebp7:arm64. 515s Preparing to unpack .../113-libwebp7_1.5.0-0.1_arm64.deb ... 515s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 515s Selecting previously unselected package libtiff6:arm64. 515s Preparing to unpack .../114-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 515s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 515s Selecting previously unselected package libxft2:arm64. 515s Preparing to unpack .../115-libxft2_2.3.6-1build1_arm64.deb ... 515s Unpacking libxft2:arm64 (2.3.6-1build1) ... 515s Selecting previously unselected package libxss1:arm64. 515s Preparing to unpack .../116-libxss1_1%3a1.2.3-1build3_arm64.deb ... 515s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 515s Selecting previously unselected package libtk8.6:arm64. 515s Preparing to unpack .../117-libtk8.6_8.6.16-1_arm64.deb ... 515s Unpacking libtk8.6:arm64 (8.6.16-1) ... 515s Selecting previously unselected package libxt6t64:arm64. 515s Preparing to unpack .../118-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 515s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 515s Selecting previously unselected package zip. 515s Preparing to unpack .../119-zip_3.0-14ubuntu2_arm64.deb ... 515s Unpacking zip (3.0-14ubuntu2) ... 515s Selecting previously unselected package unzip. 515s Preparing to unpack .../120-unzip_6.0-28ubuntu6_arm64.deb ... 515s Unpacking unzip (6.0-28ubuntu6) ... 515s Selecting previously unselected package xdg-utils. 515s Preparing to unpack .../121-xdg-utils_1.2.1-2ubuntu1_all.deb ... 515s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 515s Selecting previously unselected package r-base-core. 515s Preparing to unpack .../122-r-base-core_4.4.3-1_arm64.deb ... 515s Unpacking r-base-core (4.4.3-1) ... 515s Selecting previously unselected package r-cran-littler. 516s Preparing to unpack .../123-r-cran-littler_0.3.20-2_arm64.deb ... 516s Unpacking r-cran-littler (0.3.20-2) ... 516s Selecting previously unselected package littler. 516s Preparing to unpack .../124-littler_0.3.20-2_all.deb ... 516s Unpacking littler (0.3.20-2) ... 516s Selecting previously unselected package node-bootstrap-sass. 516s Preparing to unpack .../125-node-bootstrap-sass_3.4.3-2_all.deb ... 516s Unpacking node-bootstrap-sass (3.4.3-2) ... 516s Selecting previously unselected package node-html5shiv. 516s Preparing to unpack .../126-node-html5shiv_3.7.3+dfsg-5_all.deb ... 516s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 516s Selecting previously unselected package node-normalize.css. 516s Preparing to unpack .../127-node-normalize.css_8.0.1-5_all.deb ... 516s Unpacking node-normalize.css (8.0.1-5) ... 516s Selecting previously unselected package pandoc-data. 516s Preparing to unpack .../128-pandoc-data_3.1.11.1-3build1_all.deb ... 516s Unpacking pandoc-data (3.1.11.1-3build1) ... 516s Selecting previously unselected package pandoc. 516s Preparing to unpack .../129-pandoc_3.1.11.1+ds-2_arm64.deb ... 516s Unpacking pandoc (3.1.11.1+ds-2) ... 517s Selecting previously unselected package liblzma-dev:arm64. 517s Preparing to unpack .../130-liblzma-dev_5.6.4-1_arm64.deb ... 517s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 517s Selecting previously unselected package pkgconf-bin. 517s Preparing to unpack .../131-pkgconf-bin_1.8.1-4_arm64.deb ... 517s Unpacking pkgconf-bin (1.8.1-4) ... 517s Selecting previously unselected package pkgconf:arm64. 517s Preparing to unpack .../132-pkgconf_1.8.1-4_arm64.deb ... 517s Unpacking pkgconf:arm64 (1.8.1-4) ... 517s Selecting previously unselected package libtirpc-dev:arm64. 517s Preparing to unpack .../133-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 517s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 517s Selecting previously unselected package r-base-dev. 517s Preparing to unpack .../134-r-base-dev_4.4.3-1_all.deb ... 517s Unpacking r-base-dev (4.4.3-1) ... 517s Selecting previously unselected package pkg-r-autopkgtest. 517s Preparing to unpack .../135-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 517s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 517s Selecting previously unselected package r-bioc-biocgenerics. 517s Preparing to unpack .../136-r-bioc-biocgenerics_0.52.0-2_all.deb ... 517s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 517s Selecting previously unselected package r-bioc-s4vectors. 517s Preparing to unpack .../137-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 517s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 517s Selecting previously unselected package r-bioc-iranges. 517s Preparing to unpack .../138-r-bioc-iranges_2.40.1-2_arm64.deb ... 517s Unpacking r-bioc-iranges (2.40.1-2) ... 517s Selecting previously unselected package r-bioc-zlibbioc. 517s Preparing to unpack .../139-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 517s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 517s Selecting previously unselected package r-bioc-xvector. 517s Preparing to unpack .../140-r-bioc-xvector_0.46.0-2_arm64.deb ... 517s Unpacking r-bioc-xvector (0.46.0-2) ... 517s Selecting previously unselected package r-cran-curl. 517s Preparing to unpack .../141-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 517s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 517s Selecting previously unselected package r-cran-jsonlite. 517s Preparing to unpack .../142-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 517s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 518s Selecting previously unselected package r-cran-mime. 518s Preparing to unpack .../143-r-cran-mime_0.12-2_arm64.deb ... 518s Unpacking r-cran-mime (0.12-2) ... 518s Selecting previously unselected package r-cran-sys. 518s Preparing to unpack .../144-r-cran-sys_3.4.3-1_arm64.deb ... 518s Unpacking r-cran-sys (3.4.3-1) ... 518s Selecting previously unselected package r-cran-askpass. 518s Preparing to unpack .../145-r-cran-askpass_1.2.1-1_arm64.deb ... 518s Unpacking r-cran-askpass (1.2.1-1) ... 518s Selecting previously unselected package r-cran-openssl. 518s Preparing to unpack .../146-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 518s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 518s Selecting previously unselected package r-cran-r6. 518s Preparing to unpack .../147-r-cran-r6_2.6.1-1_all.deb ... 518s Unpacking r-cran-r6 (2.6.1-1) ... 518s Selecting previously unselected package r-cran-httr. 518s Preparing to unpack .../148-r-cran-httr_1.4.7+dfsg-1_all.deb ... 518s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 518s Selecting previously unselected package r-bioc-ucsc.utils. 518s Preparing to unpack .../149-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 518s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 518s Selecting previously unselected package r-bioc-genomeinfodbdata. 518s Preparing to unpack .../150-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 518s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 518s Selecting previously unselected package r-bioc-genomeinfodb. 518s Preparing to unpack .../151-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 518s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 518s Selecting previously unselected package r-cran-crayon. 518s Preparing to unpack .../152-r-cran-crayon_1.5.3-1_all.deb ... 518s Unpacking r-cran-crayon (1.5.3-1) ... 518s Selecting previously unselected package r-bioc-biostrings. 518s Preparing to unpack .../153-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 518s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 518s Selecting previously unselected package r-cran-base64enc. 518s Preparing to unpack .../154-r-cran-base64enc_0.1-3-3_arm64.deb ... 518s Unpacking r-cran-base64enc (0.1-3-3) ... 518s Selecting previously unselected package r-cran-bh. 518s Preparing to unpack .../155-r-cran-bh_1.84.0-1_all.deb ... 518s Unpacking r-cran-bh (1.84.0-1) ... 518s Selecting previously unselected package r-cran-bigmemory.sri. 518s Preparing to unpack .../156-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 518s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 518s Selecting previously unselected package r-cran-pkgkitten. 518s Preparing to unpack .../157-r-cran-pkgkitten_0.2.4-1_all.deb ... 518s Unpacking r-cran-pkgkitten (0.2.4-1) ... 518s Selecting previously unselected package r-cran-rcpp. 518s Preparing to unpack .../158-r-cran-rcpp_1.0.14-1_arm64.deb ... 518s Unpacking r-cran-rcpp (1.0.14-1) ... 519s Selecting previously unselected package r-cran-uuid. 519s Preparing to unpack .../159-r-cran-uuid_1.2-1-1_arm64.deb ... 519s Unpacking r-cran-uuid (1.2-1-1) ... 519s Selecting previously unselected package r-cran-bigmemory. 519s Preparing to unpack .../160-r-cran-bigmemory_4.6.4-1ubuntu1_arm64.deb ... 519s Unpacking r-cran-bigmemory (4.6.4-1ubuntu1) ... 519s Selecting previously unselected package r-cran-bio3d. 519s Preparing to unpack .../161-r-cran-bio3d_2.4-5-1_arm64.deb ... 519s Unpacking r-cran-bio3d (2.4-5-1) ... 519s Selecting previously unselected package r-cran-bitops. 519s Preparing to unpack .../162-r-cran-bitops_1.0-9-1_arm64.deb ... 519s Unpacking r-cran-bitops (1.0-9-1) ... 519s Selecting previously unselected package r-cran-brio. 519s Preparing to unpack .../163-r-cran-brio_1.1.5-1_arm64.deb ... 519s Unpacking r-cran-brio (1.1.5-1) ... 519s Selecting previously unselected package r-cran-rlang. 519s Preparing to unpack .../164-r-cran-rlang_1.1.5-1_arm64.deb ... 519s Unpacking r-cran-rlang (1.1.5-1) ... 519s Selecting previously unselected package r-cran-fastmap. 519s Preparing to unpack .../165-r-cran-fastmap_1.2.0-1_arm64.deb ... 519s Unpacking r-cran-fastmap (1.2.0-1) ... 519s Selecting previously unselected package r-cran-cachem. 519s Preparing to unpack .../166-r-cran-cachem_1.1.0-1_arm64.deb ... 519s Unpacking r-cran-cachem (1.1.0-1) ... 519s Selecting previously unselected package r-cran-digest. 519s Preparing to unpack .../167-r-cran-digest_0.6.37-1_arm64.deb ... 519s Unpacking r-cran-digest (0.6.37-1) ... 519s Selecting previously unselected package r-cran-htmltools. 519s Preparing to unpack .../168-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 519s Unpacking r-cran-htmltools (0.5.8.1-1) ... 519s Selecting previously unselected package r-cran-jquerylib. 519s Preparing to unpack .../169-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 519s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 519s Selecting previously unselected package r-cran-cli. 519s Preparing to unpack .../170-r-cran-cli_3.6.4-1_arm64.deb ... 519s Unpacking r-cran-cli (3.6.4-1) ... 519s Selecting previously unselected package r-cran-glue. 519s Preparing to unpack .../171-r-cran-glue_1.8.0-1_arm64.deb ... 519s Unpacking r-cran-glue (1.8.0-1) ... 519s Selecting previously unselected package r-cran-lifecycle. 519s Preparing to unpack .../172-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 519s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 519s Selecting previously unselected package r-cran-memoise. 519s Preparing to unpack .../173-r-cran-memoise_2.0.1-1_all.deb ... 519s Unpacking r-cran-memoise (2.0.1-1) ... 519s Selecting previously unselected package r-cran-fs. 519s Preparing to unpack .../174-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 519s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 519s Selecting previously unselected package r-cran-rappdirs. 519s Preparing to unpack .../175-r-cran-rappdirs_0.3.3-1_arm64.deb ... 519s Unpacking r-cran-rappdirs (0.3.3-1) ... 519s Selecting previously unselected package r-cran-sass. 519s Preparing to unpack .../176-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 519s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 520s Selecting previously unselected package r-cran-bslib. 520s Preparing to unpack .../177-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 520s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 520s Selecting previously unselected package r-cran-ps. 520s Preparing to unpack .../178-r-cran-ps_1.9.0-1_arm64.deb ... 520s Unpacking r-cran-ps (1.9.0-1) ... 520s Selecting previously unselected package r-cran-processx. 520s Preparing to unpack .../179-r-cran-processx_3.8.6-1_arm64.deb ... 520s Unpacking r-cran-processx (3.8.6-1) ... 520s Selecting previously unselected package r-cran-callr. 520s Preparing to unpack .../180-r-cran-callr_3.7.6-1_all.deb ... 520s Unpacking r-cran-callr (3.7.6-1) ... 520s Selecting previously unselected package r-cran-commonmark. 520s Preparing to unpack .../181-r-cran-commonmark_1.9.2-2_arm64.deb ... 520s Unpacking r-cran-commonmark (1.9.2-2) ... 520s Selecting previously unselected package r-cran-cpp11. 520s Preparing to unpack .../182-r-cran-cpp11_0.5.2-1_all.deb ... 520s Unpacking r-cran-cpp11 (0.5.2-1) ... 520s Selecting previously unselected package r-cran-desc. 520s Preparing to unpack .../183-r-cran-desc_1.4.3-1_all.deb ... 520s Unpacking r-cran-desc (1.4.3-1) ... 520s Selecting previously unselected package r-cran-diffobj. 520s Preparing to unpack .../184-r-cran-diffobj_0.3.5-1_arm64.deb ... 520s Unpacking r-cran-diffobj (0.3.5-1) ... 520s Selecting previously unselected package r-cran-evaluate. 520s Preparing to unpack .../185-r-cran-evaluate_1.0.3-1_all.deb ... 520s Unpacking r-cran-evaluate (1.0.3-1) ... 520s Selecting previously unselected package r-cran-fontawesome. 520s Preparing to unpack .../186-r-cran-fontawesome_0.5.3-1_all.deb ... 520s Unpacking r-cran-fontawesome (0.5.3-1) ... 520s Selecting previously unselected package r-cran-xfun. 520s Preparing to unpack .../187-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 520s Unpacking r-cran-xfun (0.51+dfsg-1) ... 520s Selecting previously unselected package r-cran-highr. 520s Preparing to unpack .../188-r-cran-highr_0.11+dfsg-1_all.deb ... 520s Unpacking r-cran-highr (0.11+dfsg-1) ... 520s Selecting previously unselected package r-cran-later. 520s Preparing to unpack .../189-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 520s Unpacking r-cran-later (1.4.1+dfsg-1) ... 520s Selecting previously unselected package r-cran-magrittr. 520s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 520s Unpacking r-cran-magrittr (2.0.3-1) ... 520s Selecting previously unselected package r-cran-promises. 520s Preparing to unpack .../191-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 520s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 521s Selecting previously unselected package r-cran-httpuv. 521s Preparing to unpack .../192-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 521s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 521s Selecting previously unselected package r-cran-lattice. 521s Preparing to unpack .../193-r-cran-lattice_0.22-6-1_arm64.deb ... 521s Unpacking r-cran-lattice (0.22-6-1) ... 521s Selecting previously unselected package r-cran-matrix. 521s Preparing to unpack .../194-r-cran-matrix_1.7-3-1_arm64.deb ... 521s Unpacking r-cran-matrix (1.7-3-1) ... 521s Selecting previously unselected package r-cran-pkgconfig. 521s Preparing to unpack .../195-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 521s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 521s Selecting previously unselected package r-cran-vctrs. 521s Preparing to unpack .../196-r-cran-vctrs_0.6.5-1_arm64.deb ... 521s Unpacking r-cran-vctrs (0.6.5-1) ... 521s Selecting previously unselected package r-cran-igraph. 521s Preparing to unpack .../197-r-cran-igraph_2.1.4-1_arm64.deb ... 521s Unpacking r-cran-igraph (2.1.4-1) ... 521s Selecting previously unselected package r-cran-yaml. 521s Preparing to unpack .../198-r-cran-yaml_2.3.10-1_arm64.deb ... 521s Unpacking r-cran-yaml (2.3.10-1) ... 521s Selecting previously unselected package libjs-mathjax. 521s Preparing to unpack .../199-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 521s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 522s Selecting previously unselected package r-cran-knitr. 522s Preparing to unpack .../200-r-cran-knitr_1.49+dfsg-1_all.deb ... 522s Unpacking r-cran-knitr (1.49+dfsg-1) ... 522s Selecting previously unselected package r-cran-ncdf4. 522s Preparing to unpack .../201-r-cran-ncdf4_1.23-1build1_arm64.deb ... 522s Unpacking r-cran-ncdf4 (1.23-1build1) ... 522s Selecting previously unselected package r-cran-pkgbuild. 522s Preparing to unpack .../202-r-cran-pkgbuild_1.4.6-1_all.deb ... 522s Unpacking r-cran-pkgbuild (1.4.6-1) ... 522s Selecting previously unselected package r-cran-rprojroot. 522s Preparing to unpack .../203-r-cran-rprojroot_2.0.4-2_all.deb ... 522s Unpacking r-cran-rprojroot (2.0.4-2) ... 522s Selecting previously unselected package r-cran-withr. 522s Preparing to unpack .../204-r-cran-withr_3.0.2+dfsg-1_all.deb ... 522s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 522s Selecting previously unselected package r-cran-pkgload. 522s Preparing to unpack .../205-r-cran-pkgload_1.4.0-1_all.deb ... 522s Unpacking r-cran-pkgload (1.4.0-1) ... 522s Selecting previously unselected package r-cran-praise. 522s Preparing to unpack .../206-r-cran-praise_1.0.0-4build1_all.deb ... 522s Unpacking r-cran-praise (1.0.0-4build1) ... 522s Selecting previously unselected package r-cran-rcurl. 522s Preparing to unpack .../207-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 522s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 522s Selecting previously unselected package r-cran-tinytex. 522s Preparing to unpack .../208-r-cran-tinytex_0.56-1_all.deb ... 522s Unpacking r-cran-tinytex (0.56-1) ... 522s Selecting previously unselected package libjs-modernizr. 522s Preparing to unpack .../209-libjs-modernizr_3.13.0-0.1_all.deb ... 522s Unpacking libjs-modernizr (3.13.0-0.1) ... 522s Selecting previously unselected package r-cran-xtable. 522s Preparing to unpack .../210-r-cran-xtable_1%3a1.8-4-2_all.deb ... 522s Unpacking r-cran-xtable (1:1.8-4-2) ... 522s Selecting previously unselected package r-cran-sourcetools. 522s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 522s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 522s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 522s Preparing to unpack .../212-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 522s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 522s Selecting previously unselected package r-cran-shiny. 522s Preparing to unpack .../213-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 522s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 523s Selecting previously unselected package r-cran-rmarkdown. 523s Preparing to unpack .../214-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 523s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 523s Selecting previously unselected package r-cran-waldo. 523s Preparing to unpack .../215-r-cran-waldo_0.6.1-2_all.deb ... 523s Unpacking r-cran-waldo (0.6.1-2) ... 523s Selecting previously unselected package r-cran-testthat. 523s Preparing to unpack .../216-r-cran-testthat_3.2.3-1_arm64.deb ... 523s Unpacking r-cran-testthat (3.2.3-1) ... 523s Selecting previously unselected package r-cran-xml. 523s Preparing to unpack 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node-html5shiv (3.7.3+dfsg-5) ... 523s Setting up libdeflate0:arm64 (1.23-1) ... 523s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 523s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 523s Setting up libreadline-dev:arm64 (8.2-6) ... 523s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 523s Setting up libjs-modernizr (3.13.0-0.1) ... 523s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 523s Setting up libpcre2-16-0:arm64 (10.45-1) ... 523s Setting up libaec0:arm64 (1.1.3-1) ... 523s Setting up libjs-es5-shim (4.6.7-2) ... 523s Setting up zip (3.0-14ubuntu2) ... 523s Setting up libpcre2-32-0:arm64 (10.45-1) ... 523s Setting up libblas3:arm64 (3.12.1-2) ... 523s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 523s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 523s Setting up libpkgconf3:arm64 (1.8.1-4) ... 523s Setting up libjs-d3 (3.5.17-4) ... 523s Setting up fonts-dejavu-mono (2.37-8) ... 523s Setting up libmpc3:arm64 (1.3.1-1build2) ... 523s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 523s Setting up icu-devtools (76.1-1ubuntu2) ... 523s Setting up fonts-dejavu-core (2.37-8) ... 523s Setting up pkgconf-bin (1.8.1-4) ... 523s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 523s Setting up libltdl7:arm64 (2.5.4-4) ... 523s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 523s Setting up libwebp7:arm64 (1.5.0-0.1) ... 523s Setting up liblzma-dev:arm64 (5.6.4-1) ... 523s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 523s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 523s Setting up libpcre2-posix3:arm64 (10.45-1) ... 523s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 523s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 523s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 523s Setting up libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 523s Setting up liblua5.4-0:arm64 (5.4.7-1) 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Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 524s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 524s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 524s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 524s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 524s Setting up libsm6:arm64 (2:1.2.4-1) ... 524s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 524s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 524s Setting up fontconfig (2.15.0-2ubuntu1) ... 526s Regenerating fonts cache... done. 526s Setting up libxft2:arm64 (2.3.6-1build1) ... 526s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 526s Setting up libtk8.6:arm64 (8.6.16-1) ... 526s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 526s Setting up libnetcdf22:arm64 (1:4.9.3-1) ... 526s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 526s Setting up libcairo2:arm64 (1.18.2-2) ... 526s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 526s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 526s Setting up cpp-14 (14.2.0-17ubuntu3) ... 526s Setting up cpp (4:14.2.0-1ubuntu1) ... 526s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 526s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 526s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 526s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 526s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 526s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 526s Setting up gcc-14 (14.2.0-17ubuntu3) ... 526s Setting up r-base-core (4.4.3-1) ... 526s Creating config file /etc/R/Renviron with new version 526s Setting up r-cran-crayon (1.5.3-1) ... 526s Setting up r-cran-sourcetools (0.1.7-1-1) ... 526s Setting up r-cran-lattice (0.22-6-1) ... 526s Setting up r-cran-ps (1.9.0-1) ... 526s Setting up r-cran-xml (3.99-0.18-1) ... 526s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 526s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 526s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 526s Setting up r-cran-commonmark (1.9.2-2) ... 526s Setting up g++-14 (14.2.0-17ubuntu3) ... 526s Setting up r-cran-r6 (2.6.1-1) ... 526s Setting up r-cran-pkgkitten (0.2.4-1) ... 526s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 526s Setting up r-cran-magrittr (2.0.3-1) ... 526s Setting up r-cran-rappdirs (0.3.3-1) ... 526s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 526s Setting up r-cran-littler (0.3.20-2) ... 526s Setting up r-cran-bh (1.84.0-1) ... 526s Setting up r-cran-ncdf4 (1.23-1build1) ... 526s Setting up r-cran-fs (1.6.5+dfsg-1) ... 526s Setting up r-cran-rcpp (1.0.14-1) ... 526s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 526s Setting up r-cran-brio (1.1.5-1) ... 526s Setting up r-cran-diffobj (0.3.5-1) ... 526s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 526s Setting up r-bioc-biocgenerics (0.52.0-2) ... 526s Setting up r-cran-rlang (1.1.5-1) ... 526s Setting up littler (0.3.20-2) ... 526s Setting up r-cran-bio3d (2.4-5-1) ... 526s Setting up r-cran-uuid (1.2-1-1) ... 526s Setting up r-cran-xfun (0.51+dfsg-1) ... 526s Setting up r-cran-sys (3.4.3-1) ... 526s Setting up r-cran-withr (3.0.2+dfsg-1) ... 526s Setting up r-cran-processx (3.8.6-1) ... 526s Setting up r-cran-mime (0.12-2) ... 526s Setting up r-cran-praise (1.0.0-4build1) ... 526s Setting up r-cran-base64enc (0.1-3-3) ... 526s Setting up r-cran-digest (0.6.37-1) ... 526s Setting up r-cran-yaml (2.3.10-1) ... 526s Setting up r-cran-evaluate (1.0.3-1) ... 526s Setting up r-cran-bigmemory (4.6.4-1ubuntu1) ... 526s Setting up r-cran-highr (0.11+dfsg-1) ... 526s Setting up r-cran-glue (1.8.0-1) ... 526s Setting up r-cran-xtable (1:1.8-4-2) ... 526s Setting up r-cran-cli (3.6.4-1) ... 526s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 526s Setting up r-cran-bitops (1.0-9-1) ... 526s Setting up r-cran-rprojroot (2.0.4-2) ... 526s Setting up gcc (4:14.2.0-1ubuntu1) ... 526s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 526s Setting up r-cran-askpass (1.2.1-1) ... 526s Setting up r-cran-fastmap (1.2.0-1) ... 526s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 526s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 526s Setting up r-cran-cpp11 (0.5.2-1) ... 526s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 526s Setting up r-cran-waldo (0.6.1-2) ... 526s Setting up r-cran-later (1.4.1+dfsg-1) ... 526s Setting up r-cran-matrix (1.7-3-1) ... 526s Setting up r-cran-htmltools (0.5.8.1-1) ... 526s Setting up r-cran-tinytex (0.56-1) ... 526s Setting up r-cran-knitr (1.49+dfsg-1) ... 526s Setting up g++ (4:14.2.0-1ubuntu1) ... 526s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 526s Setting up r-cran-cachem (1.1.0-1) ... 526s Setting up r-cran-sass (0.4.9+dfsg-1) ... 526s Setting up build-essential (12.10ubuntu1) ... 526s Setting up r-bioc-iranges (2.40.1-2) ... 526s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 526s Setting up r-cran-vctrs (0.6.5-1) ... 526s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 526s Setting up r-cran-callr (3.7.6-1) ... 526s Setting up r-cran-desc (1.4.3-1) ... 526s Setting up r-cran-fontawesome (0.5.3-1) ... 526s Setting up r-cran-igraph (2.1.4-1) ... 526s Setting up gfortran (4:14.2.0-1ubuntu1) ... 526s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 526s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 526s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 526s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 526s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 526s Setting up r-cran-httr (1.4.7+dfsg-1) ... 526s Setting up r-cran-memoise (2.0.1-1) ... 526s Setting up r-cran-promises (1.3.2+dfsg-1) ... 526s Setting up r-bioc-xvector (0.46.0-2) ... 526s Setting up r-cran-pkgbuild (1.4.6-1) ... 526s Setting up r-cran-pkgload (1.4.0-1) ... 526s Setting up r-base-dev (4.4.3-1) ... 526s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 526s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 526s Setting up r-cran-testthat (3.2.3-1) ... 526s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 526s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 526s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 526s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 526s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 526s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 526s Processing triggers for libc-bin (2.41-1ubuntu2) ... 526s Processing triggers for man-db (2.13.0-1) ... 528s Processing triggers for install-info (7.1.1-1) ... 534s autopkgtest [15:28:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 534s autopkgtest [15:28:40]: test pkg-r-autopkgtest: [----------------------- 534s Test: Try to load the R library bio3d 534s 534s R version 4.4.3 (2025-02-28) -- "Trophy Case" 534s Copyright (C) 2025 The R Foundation for Statistical Computing 534s Platform: aarch64-unknown-linux-gnu 534s 534s R is free software and comes with ABSOLUTELY NO WARRANTY. 534s You are welcome to redistribute it under certain conditions. 534s Type 'license()' or 'licence()' for distribution details. 534s 534s R is a collaborative project with many contributors. 534s Type 'contributors()' for more information and 534s 'citation()' on how to cite R or R packages in publications. 534s 534s Type 'demo()' for some demos, 'help()' for on-line help, or 534s 'help.start()' for an HTML browser interface to help. 534s Type 'q()' to quit R. 534s 535s > library('bio3d') 535s > 535s > 535s Other tests are currently unsupported! 535s They will be progressively added. 535s autopkgtest [15:28:41]: test pkg-r-autopkgtest: -----------------------] 536s autopkgtest [15:28:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 536s pkg-r-autopkgtest PASS 536s autopkgtest [15:28:42]: @@@@@@@@@@@@@@@@@@@@ summary 536s run-unit-test PASS 536s pkg-r-autopkgtest PASS 554s nova [W] Using flock in prodstack6-arm64 554s flock: timeout while waiting to get lock 554s Creating nova instance adt-plucky-arm64-r-cran-bio3d-20250315-151946-juju-7f2275-prod-proposed-migration-environment-2-680173fd-3a08-42ec-b907-af72aee0fbfa from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 554s nova [W] Timed out waiting for b1901442-962c-47e9-8c85-d93a53133f84 to get deleted. 554s nova [W] Using flock in prodstack6-arm64 554s flock: timeout while waiting to get lock 554s Creating nova instance adt-plucky-arm64-r-cran-bio3d-20250315-151946-juju-7f2275-prod-proposed-migration-environment-2-680173fd-3a08-42ec-b907-af72aee0fbfa from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 554s nova [W] Timed out waiting for 08245635-6b4e-4e74-aa41-cd1d1e27345b to get deleted.