0s autopkgtest [04:25:22]: starting date and time: 2025-02-19 04:25:22+0000
  0s autopkgtest [04:25:22]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [04:25:22]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k8mm7zyt/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-bigmemory --apt-upgrade r-cran-bigmemory --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-bigmemory/4.6.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-5.secgroup --name adt-plucky-arm64-r-cran-bigmemory-20250219-042522-juju-7f2275-prod-proposed-migration-environment-20-3d285634-3d54-49d6-8011-65e965470c6c --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
162s autopkgtest [04:28:04]: testbed dpkg architecture: arm64
162s autopkgtest [04:28:04]: testbed apt version: 2.9.29
163s autopkgtest [04:28:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup
163s autopkgtest [04:28:05]: testbed release detected to be: None
164s autopkgtest [04:28:06]: updating testbed package index (apt update)
164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
164s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
164s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
165s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
165s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB]
165s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [79.1 kB]
165s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
165s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [788 kB]
165s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [97.6 kB]
165s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [7960 B]
165s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [698 kB]
165s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [12.1 kB]
165s Fetched 1811 kB in 1s (1837 kB/s)
166s Reading package lists...
167s Reading package lists...
168s Building dependency tree...
168s Reading state information...
169s Calculating upgrade...
170s The following packages will be upgraded:
170s   dhcpcd-base
170s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
170s Need to get 216 kB of archives.
170s After this operation, 0 B of additional disk space will be used.
170s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 dhcpcd-base arm64 1:10.1.0-7 [216 kB]
171s Fetched 216 kB in 0s (481 kB/s)
171s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116620 files and directories currently installed.)
171s Preparing to unpack .../dhcpcd-base_1%3a10.1.0-7_arm64.deb ...
171s Unpacking dhcpcd-base (1:10.1.0-7) over (1:10.1.0-6) ...
171s Setting up dhcpcd-base (1:10.1.0-7) ...
171s Processing triggers for man-db (2.13.0-1) ...
173s Reading package lists...
173s Building dependency tree...
173s Reading state information...
175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
175s autopkgtest [04:28:17]: upgrading testbed (apt dist-upgrade and autopurge)
175s Reading package lists...
176s Building dependency tree...
176s Reading state information...
177s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
177s Starting 2 pkgProblemResolver with broken count: 0
177s Done
178s Entering ResolveByKeep
179s 
179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
179s Reading package lists...
180s Building dependency tree...
180s Reading state information...
180s Starting pkgProblemResolver with broken count: 0
180s Starting 2 pkgProblemResolver with broken count: 0
180s Done
181s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
184s autopkgtest [04:28:26]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 15:49:33 UTC 2025
184s autopkgtest [04:28:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bigmemory
186s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-bigmemory 4.6.4-1 (dsc) [2219 B]
186s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-bigmemory 4.6.4-1 (tar) [72.3 kB]
186s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-bigmemory 4.6.4-1 (diff) [3096 B]
186s gpgv: Signature made Wed Jan 17 13:08:49 2024 UTC
186s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
186s gpgv:                issuer "tille@debian.org"
186s gpgv: Can't check signature: No public key
186s dpkg-source: warning: cannot verify inline signature for ./r-cran-bigmemory_4.6.4-1.dsc: no acceptable signature found
186s autopkgtest [04:28:28]: testing package r-cran-bigmemory version 4.6.4-1
187s autopkgtest [04:28:29]: build not needed
188s autopkgtest [04:28:30]: test run-unit-test: preparing testbed
189s Reading package lists...
189s Building dependency tree...
189s Reading state information...
189s Starting pkgProblemResolver with broken count: 0
189s Starting 2 pkgProblemResolver with broken count: 0
189s Done
190s The following NEW packages will be installed:
190s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libasan8
190s   libblas3 libboost-dev libboost1.83-dev libcairo2 libdatrie1 libdeflate0
190s   libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3
190s   libharfbuzz0b libhwasan0 libice6 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
190s   liblapack3 liblerc4 liblsan0 libpango-1.0-0 libpangocairo-1.0-0
190s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6
190s   libstdc++-14-dev libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtsan2
190s   libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
190s   libxt6t64 littler r-base-core r-cran-bh r-cran-bigmemory
190s   r-cran-bigmemory.sri r-cran-brio r-cran-callr r-cran-cli r-cran-crayon
190s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fs
190s   r-cran-glue r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
190s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
190s   r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-remotes r-cran-rlang
190s   r-cran-rprojroot r-cran-testthat r-cran-uuid r-cran-waldo r-cran-withr unzip
190s   x11-common xdg-utils zip
190s 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded.
190s Need to get 77.1 MB of archives.
190s After this operation, 343 MB of additional disk space will be used.
190s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
191s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
191s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
191s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
191s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
191s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250213-1ubuntu1 [2928 kB]
191s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
191s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250213-1ubuntu1 [146 kB]
191s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250213-1ubuntu1 [28.0 kB]
191s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250213-1ubuntu1 [1319 kB]
191s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250213-1ubuntu1 [2695 kB]
191s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250213-1ubuntu1 [1178 kB]
191s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250213-1ubuntu1 [1642 kB]
191s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu1 [2593 kB]
192s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu1 [2499 kB]
192s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu1 [10.7 MB]
192s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
192s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
192s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
192s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
193s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
193s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
193s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
193s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
193s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250213-1ubuntu1 [443 kB]
193s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
193s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
193s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
193s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
193s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
193s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
193s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
193s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
193s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
193s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
193s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
193s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
193s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
193s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
193s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
193s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
193s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
193s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
193s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
193s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
193s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
193s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
193s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
193s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
193s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
193s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
193s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
193s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
193s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
194s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
194s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
194s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
194s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB]
194s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
194s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
194s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB]
194s Get:62 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-bigmemory arm64 4.6.4-1 [437 kB]
194s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
194s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.8.1-1 [395 kB]
194s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
194s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.5-1 [354 kB]
194s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
194s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.3-1 [1347 kB]
194s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
194s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
194s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
194s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
194s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
194s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
194s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
194s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [445 kB]
194s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
194s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
194s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
194s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
194s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
194s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
194s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
194s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
194s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-remotes all 2.5.0+dfsg-1 [447 kB]
194s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB]
194s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.1.1-1 [1629 kB]
195s Preconfiguring packages ...
195s Fetched 77.1 MB in 4s (19.8 MB/s)
195s Selecting previously unselected package fonts-dejavu-mono.
195s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 116620 files and directories currently installed.)
195s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ...
195s Unpacking fonts-dejavu-mono (2.37-8) ...
195s Selecting previously unselected package fonts-dejavu-core.
195s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ...
195s Unpacking fonts-dejavu-core (2.37-8) ...
195s Selecting previously unselected package fontconfig-config.
195s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
195s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
195s Selecting previously unselected package libfontconfig1:arm64.
195s Preparing to unpack .../03-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
195s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
195s Selecting previously unselected package fontconfig.
195s Preparing to unpack .../04-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
195s Unpacking fontconfig (2.15.0-2ubuntu1) ...
195s Selecting previously unselected package libasan8:arm64.
195s Preparing to unpack .../05-libasan8_15-20250213-1ubuntu1_arm64.deb ...
195s Unpacking libasan8:arm64 (15-20250213-1ubuntu1) ...
195s Selecting previously unselected package libblas3:arm64.
195s Preparing to unpack .../06-libblas3_3.12.1-2_arm64.deb ...
195s Unpacking libblas3:arm64 (3.12.1-2) ...
196s Selecting previously unselected package libgomp1:arm64.
196s Preparing to unpack .../07-libgomp1_15-20250213-1ubuntu1_arm64.deb ...
196s Unpacking libgomp1:arm64 (15-20250213-1ubuntu1) ...
196s Selecting previously unselected package libitm1:arm64.
196s Preparing to unpack .../08-libitm1_15-20250213-1ubuntu1_arm64.deb ...
196s Unpacking libitm1:arm64 (15-20250213-1ubuntu1) ...
196s Selecting previously unselected package liblsan0:arm64.
196s Preparing to unpack .../09-liblsan0_15-20250213-1ubuntu1_arm64.deb ...
196s Unpacking liblsan0:arm64 (15-20250213-1ubuntu1) ...
196s Selecting previously unselected package libtsan2:arm64.
196s Preparing to unpack .../10-libtsan2_15-20250213-1ubuntu1_arm64.deb ...
196s Unpacking libtsan2:arm64 (15-20250213-1ubuntu1) ...
196s Selecting previously unselected package libubsan1:arm64.
196s Preparing to unpack .../11-libubsan1_15-20250213-1ubuntu1_arm64.deb ...
196s Unpacking libubsan1:arm64 (15-20250213-1ubuntu1) ...
196s Selecting previously unselected package libhwasan0:arm64.
196s Preparing to unpack .../12-libhwasan0_15-20250213-1ubuntu1_arm64.deb ...
196s Unpacking libhwasan0:arm64 (15-20250213-1ubuntu1) ...
196s Selecting previously unselected package libgcc-14-dev:arm64.
196s Preparing to unpack .../13-libgcc-14-dev_14.2.0-17ubuntu1_arm64.deb ...
196s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu1) ...
196s Selecting previously unselected package libstdc++-14-dev:arm64.
196s Preparing to unpack .../14-libstdc++-14-dev_14.2.0-17ubuntu1_arm64.deb ...
196s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu1) ...
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204s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
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204s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
204s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
204s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
204s Setting up libxcb-render0:arm64 (1.17.0-2) ...
204s Setting up unzip (6.0-28ubuntu6) ...
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205s Setting up libdeflate0:arm64 (1.23-1) ...
205s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
205s Setting up libgomp1:arm64 (15-20250213-1ubuntu1) ...
205s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
205s Setting up zip (3.0-14ubuntu2) ...
205s Setting up libblas3:arm64 (3.12.1-2) ...
205s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
205s Setting up fonts-dejavu-mono (2.37-8) ...
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205s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
205s Setting up libgfortran5:arm64 (15-20250213-1ubuntu1) ...
205s Setting up libwebp7:arm64 (1.5.0-0.1) ...
205s Setting up libubsan1:arm64 (15-20250213-1ubuntu1) ...
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205s Setting up libasan8:arm64 (15-20250213-1ubuntu1) ...
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205s Setting up libthai-data (0.1.29-2build1) ...
205s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
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205s Setting up libtsan2:arm64 (15-20250213-1ubuntu1) ...
205s Setting up xdg-utils (1.2.1-2ubuntu1) ...
205s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
205s Setting up liblsan0:arm64 (15-20250213-1ubuntu1) ...
205s Setting up libitm1:arm64 (15-20250213-1ubuntu1) ...
205s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
205s Setting up libice6:arm64 (2:1.1.1-1) ...
205s Setting up liblapack3:arm64 (3.12.1-2) ...
205s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
205s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
205s Setting up libpaper-utils (2.2.5-0.3) ...
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205s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu1) ...
205s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu1) ...
205s Setting up libsm6:arm64 (2:1.2.4-1) ...
205s Setting up fontconfig (2.15.0-2ubuntu1) ...
207s Regenerating fonts cache... done.
207s Setting up libxft2:arm64 (2.3.6-1build1) ...
207s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu1) ...
207s Setting up libtk8.6:arm64 (8.6.16-1) ...
207s Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
207s Setting up libcairo2:arm64 (1.18.2-2) ...
207s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
207s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ...
207s Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
207s Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
207s Setting up r-base-core (4.4.2-1build1) ...
207s Creating config file /etc/R/Renviron with new version
208s Setting up r-cran-crayon (1.5.3-1) ...
208s Setting up r-cran-ps (1.8.1-1) ...
208s Setting up r-cran-remotes (2.5.0+dfsg-1) ...
208s Setting up r-cran-r6 (2.5.1-1) ...
208s Setting up r-cran-pkgkitten (0.2.4-1) ...
208s Setting up r-cran-magrittr (2.0.3-1) ...
208s Setting up r-cran-littler (0.3.20-2) ...
208s Setting up r-cran-bh (1.84.0-1) ...
208s Setting up r-cran-fs (1.6.5+dfsg-1) ...
208s Setting up r-cran-rcpp (1.0.14-1) ...
208s Setting up r-cran-brio (1.1.5-1) ...
208s Setting up r-cran-diffobj (0.3.5-1) ...
208s Setting up r-cran-bigmemory.sri (0.1.8-1) ...
208s Setting up r-cran-rlang (1.1.5-1) ...
208s Setting up littler (0.3.20-2) ...
208s Setting up r-cran-uuid (1.2-1-1) ...
208s Setting up r-cran-withr (3.0.2+dfsg-1) ...
208s Setting up r-cran-processx (3.8.5-1) ...
208s Setting up r-cran-praise (1.0.0-4build1) ...
208s Setting up r-cran-digest (0.6.37-1) ...
208s Setting up r-cran-evaluate (1.0.3-1) ...
208s Setting up r-cran-bigmemory (4.6.4-1) ...
208s Setting up r-cran-glue (1.8.0-1) ...
208s Setting up r-cran-cli (3.6.3-1) ...
208s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
208s Setting up r-cran-rprojroot (2.0.4-2) ...
208s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
208s Setting up r-cran-waldo (0.6.1-2) ...
208s Setting up r-cran-callr (3.7.6-1) ...
208s Setting up r-cran-desc (1.4.3-1) ...
208s Setting up r-cran-pkgbuild (1.4.6-1) ...
208s Setting up r-cran-pkgload (1.4.0-1) ...
208s Setting up r-cran-testthat (3.2.1.1-1) ...
208s Processing triggers for libc-bin (2.40-4ubuntu1) ...
208s Processing triggers for man-db (2.13.0-1) ...
209s Processing triggers for install-info (7.1.1-1) ...
210s autopkgtest [04:28:52]: test run-unit-test: [-----------------------
210s BEGIN TEST testthat.R
210s 
210s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
210s Copyright (C) 2024 The R Foundation for Statistical Computing
210s Platform: aarch64-unknown-linux-gnu
210s 
210s R is free software and comes with ABSOLUTELY NO WARRANTY.
210s You are welcome to redistribute it under certain conditions.
210s Type 'license()' or 'licence()' for distribution details.
210s 
210s R is a collaborative project with many contributors.
210s Type 'contributors()' for more information and
210s 'citation()' on how to cite R or R packages in publications.
210s 
210s Type 'demo()' for some demos, 'help()' for on-line help, or
210s 'help.start()' for an HTML browser interface to help.
210s Type 'q()' to quit R.
210s 
210s > library(testthat)
210s > library(bigmemory)
210s > 
210s > test_check("bigmemory")
214s [ FAIL 1 | WARN 104 | SKIP 7 | PASS 189 ]
214s 
214s ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
214s • empty test (7): 'test_assignment.R:175:1', 'test_assignment.R:179:1',
214s   'test_assignment.R:183:1', 'test_assignment.R:187:1',
214s   'test_assignment.R:191:1', 'test_matrix_manips.R:3:1', 'test_mwhich.R:38:1'
214s 
214s ══ Failed tests ════════════════════════════════════════════════════════════════
214s ── Failure ('test_raw.R:31:3'): Making sure the 'char' matrix behaves like signed byte ──
214s mchar[1:3, 1] not equal to c(40, -123, NA).
214s 2/3 mismatches (average diff: NaN)
214s [2]  NA - -123 == NA
214s [3] 190 -   NA == NA
214s 
214s [ FAIL 1 | WARN 104 | SKIP 7 | PASS 189 ]
214s Error: Test failures
214s Execution halted
214s autopkgtest [04:28:56]: test run-unit-test: -----------------------]
215s run-unit-test        FAIL non-zero exit status 1
215s autopkgtest [04:28:57]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
215s autopkgtest [04:28:57]: test pkg-r-autopkgtest: preparing testbed
215s Reading package lists...
216s Building dependency tree...
216s Reading state information...
216s Starting pkgProblemResolver with broken count: 0
216s Starting 2 pkgProblemResolver with broken count: 0
216s Done
217s The following NEW packages will be installed:
217s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
217s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
217s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
217s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
217s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgfortran-14-dev libicu-dev
217s   libisl23 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
217s   liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
217s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libtirpc-dev
217s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
217s 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded.
217s Need to get 77.7 MB of archives.
217s After this operation, 261 MB of additional disk space will be used.
217s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
218s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
218s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [10.6 MB]
220s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu1 [1032 B]
220s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
220s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
220s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250213-1ubuntu1 [44.2 kB]
220s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [20.9 MB]
221s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu1 [526 kB]
221s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
221s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
221s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [12.1 MB]
222s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu1 [21.8 kB]
222s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
222s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
222s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
222s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
222s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu1 [498 kB]
222s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu1 [11.4 MB]
222s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu1 [13.6 kB]
222s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
222s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
222s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
222s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
222s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
222s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
222s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
223s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
223s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
223s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
223s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
223s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250125-2 [388 kB]
223s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
223s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB]
223s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B]
223s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB]
223s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
223s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
223s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.46-4 [275 kB]
223s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
223s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.3-1 [180 kB]
223s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
223s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
223s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
223s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.2-1build1 [4342 B]
223s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
224s Fetched 77.7 MB in 6s (13.1 MB/s)
224s Selecting previously unselected package libisl23:arm64.
224s (Reading database ... 
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(Reading database ... 140584 files and directories currently installed.)
224s Preparing to unpack .../00-libisl23_0.27-1_arm64.deb ...
224s Unpacking libisl23:arm64 (0.27-1) ...
224s Selecting previously unselected package libmpc3:arm64.
224s Preparing to unpack .../01-libmpc3_1.3.1-1build2_arm64.deb ...
224s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
224s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
224s Preparing to unpack .../02-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu1_arm64.deb ...
224s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
224s Selecting previously unselected package cpp-14.
224s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu1_arm64.deb ...
224s Unpacking cpp-14 (14.2.0-17ubuntu1) ...
225s Selecting previously unselected package cpp-aarch64-linux-gnu.
225s Preparing to unpack .../04-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
225s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
225s Selecting previously unselected package cpp.
225s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
225s Unpacking cpp (4:14.2.0-1ubuntu1) ...
225s Selecting previously unselected package libcc1-0:arm64.
225s Preparing to unpack .../06-libcc1-0_15-20250213-1ubuntu1_arm64.deb ...
225s Unpacking libcc1-0:arm64 (15-20250213-1ubuntu1) ...
225s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
225s Preparing to unpack .../07-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu1_arm64.deb ...
225s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
225s Selecting previously unselected package gcc-14.
225s Preparing to unpack .../08-gcc-14_14.2.0-17ubuntu1_arm64.deb ...
225s Unpacking gcc-14 (14.2.0-17ubuntu1) ...
225s Selecting previously unselected package gcc-aarch64-linux-gnu.
225s Preparing to unpack .../09-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
225s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
225s Selecting previously unselected package gcc.
225s Preparing to unpack .../10-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
225s Unpacking gcc (4:14.2.0-1ubuntu1) ...
225s Selecting previously unselected package g++-14-aarch64-linux-gnu.
225s Preparing to unpack .../11-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu1_arm64.deb ...
225s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
226s Selecting previously unselected package g++-14.
226s Preparing to unpack .../12-g++-14_14.2.0-17ubuntu1_arm64.deb ...
226s Unpacking g++-14 (14.2.0-17ubuntu1) ...
226s Selecting previously unselected package g++-aarch64-linux-gnu.
226s Preparing to unpack .../13-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
226s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
226s Selecting previously unselected package g++.
226s Preparing to unpack .../14-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
226s Unpacking g++ (4:14.2.0-1ubuntu1) ...
226s Selecting previously unselected package build-essential.
226s Preparing to unpack .../15-build-essential_12.10ubuntu1_arm64.deb ...
226s Unpacking build-essential (12.10ubuntu1) ...
226s Selecting previously unselected package dctrl-tools.
226s Preparing to unpack .../16-dctrl-tools_2.24-3build3_arm64.deb ...
226s Unpacking dctrl-tools (2.24-3build3) ...
226s Selecting previously unselected package libgfortran-14-dev:arm64.
226s Preparing to unpack .../17-libgfortran-14-dev_14.2.0-17ubuntu1_arm64.deb ...
226s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu1) ...
226s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
226s Preparing to unpack .../18-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu1_arm64.deb ...
226s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
227s Selecting previously unselected package gfortran-14.
227s Preparing to unpack .../19-gfortran-14_14.2.0-17ubuntu1_arm64.deb ...
227s Unpacking gfortran-14 (14.2.0-17ubuntu1) ...
227s Selecting previously unselected package gfortran-aarch64-linux-gnu.
227s Preparing to unpack .../20-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
227s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
227s Selecting previously unselected package gfortran.
227s Preparing to unpack .../21-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
227s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
227s Selecting previously unselected package icu-devtools.
227s Preparing to unpack .../22-icu-devtools_76.1-1ubuntu2_arm64.deb ...
227s Unpacking icu-devtools (76.1-1ubuntu2) ...
227s Selecting previously unselected package libblas-dev:arm64.
227s Preparing to unpack .../23-libblas-dev_3.12.1-2_arm64.deb ...
227s Unpacking libblas-dev:arm64 (3.12.1-2) ...
227s Selecting previously unselected package libbz2-dev:arm64.
227s Preparing to unpack .../24-libbz2-dev_1.0.8-6_arm64.deb ...
227s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
227s Selecting previously unselected package libdeflate-dev:arm64.
227s Preparing to unpack .../25-libdeflate-dev_1.23-1_arm64.deb ...
227s Unpacking libdeflate-dev:arm64 (1.23-1) ...
227s Selecting previously unselected package libicu-dev:arm64.
227s Preparing to unpack .../26-libicu-dev_76.1-1ubuntu2_arm64.deb ...
227s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
227s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
227s Preparing to unpack .../27-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
227s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
227s Selecting previously unselected package libjpeg8-dev:arm64.
228s Preparing to unpack .../28-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
228s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
228s Selecting previously unselected package libjpeg-dev:arm64.
228s Preparing to unpack .../29-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
228s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
228s Selecting previously unselected package liblapack-dev:arm64.
228s Preparing to unpack .../30-liblapack-dev_3.12.1-2_arm64.deb ...
228s Unpacking liblapack-dev:arm64 (3.12.1-2) ...
228s Selecting previously unselected package libncurses-dev:arm64.
228s Preparing to unpack .../31-libncurses-dev_6.5+20250125-2_arm64.deb ...
228s Unpacking libncurses-dev:arm64 (6.5+20250125-2) ...
228s Selecting previously unselected package libpcre2-16-0:arm64.
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228s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
228s Selecting previously unselected package libpcre2-32-0:arm64.
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228s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
228s Selecting previously unselected package libpcre2-posix3:arm64.
228s Preparing to unpack .../34-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ...
228s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
228s Selecting previously unselected package libpcre2-dev:arm64.
228s Preparing to unpack .../35-libpcre2-dev_10.42-4ubuntu3_arm64.deb ...
228s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ...
228s Selecting previously unselected package libpkgconf3:arm64.
228s Preparing to unpack .../36-libpkgconf3_1.8.1-4_arm64.deb ...
228s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
228s Selecting previously unselected package zlib1g-dev:arm64.
228s Preparing to unpack .../37-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
228s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
228s Selecting previously unselected package libpng-dev:arm64.
228s Preparing to unpack .../38-libpng-dev_1.6.46-4_arm64.deb ...
228s Unpacking libpng-dev:arm64 (1.6.46-4) ...
228s Selecting previously unselected package libreadline-dev:arm64.
228s Preparing to unpack .../39-libreadline-dev_8.2-6_arm64.deb ...
228s Unpacking libreadline-dev:arm64 (8.2-6) ...
228s Selecting previously unselected package liblzma-dev:arm64.
228s Preparing to unpack .../40-liblzma-dev_5.6.3-1_arm64.deb ...
228s Unpacking liblzma-dev:arm64 (5.6.3-1) ...
228s Selecting previously unselected package pkgconf-bin.
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229s Unpacking pkgconf-bin (1.8.1-4) ...
229s Selecting previously unselected package pkgconf:arm64.
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229s Unpacking pkgconf:arm64 (1.8.1-4) ...
229s Selecting previously unselected package libtirpc-dev:arm64.
229s Preparing to unpack .../43-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
229s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
229s Selecting previously unselected package r-base-dev.
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229s Unpacking r-base-dev (4.4.2-1build1) ...
229s Selecting previously unselected package pkg-r-autopkgtest.
229s Preparing to unpack .../45-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
229s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
229s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu1) ...
229s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
229s Setting up libncurses-dev:arm64 (6.5+20250125-2) ...
229s Setting up libreadline-dev:arm64 (8.2-6) ...
229s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
229s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
229s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
229s Setting up libpkgconf3:arm64 (1.8.1-4) ...
229s Setting up libmpc3:arm64 (1.3.1-1build2) ...
229s Setting up icu-devtools (76.1-1ubuntu2) ...
229s Setting up pkgconf-bin (1.8.1-4) ...
229s Setting up liblzma-dev:arm64 (5.6.3-1) ...
229s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
229s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
229s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
229s Setting up libisl23:arm64 (0.27-1) ...
229s Setting up libdeflate-dev:arm64 (1.23-1) ...
229s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
229s Setting up libcc1-0:arm64 (15-20250213-1ubuntu1) ...
229s Setting up libblas-dev:arm64 (3.12.1-2) ...
229s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
229s Setting up dctrl-tools (2.24-3build3) ...
229s Setting up libbz2-dev:arm64 (1.0.8-6) ...
229s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ...
229s Setting up libpng-dev:arm64 (1.6.46-4) ...
229s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
229s Setting up pkgconf:arm64 (1.8.1-4) ...
229s Setting up liblapack-dev:arm64 (3.12.1-2) ...
229s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
229s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
229s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
229s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
229s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
229s Setting up cpp-14 (14.2.0-17ubuntu1) ...
229s Setting up cpp (4:14.2.0-1ubuntu1) ...
229s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu1) ...
229s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
229s Setting up gcc-14 (14.2.0-17ubuntu1) ...
229s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
229s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
229s Setting up g++-14 (14.2.0-17ubuntu1) ...
229s Setting up gfortran-14 (14.2.0-17ubuntu1) ...
229s Setting up gcc (4:14.2.0-1ubuntu1) ...
229s Setting up g++ (4:14.2.0-1ubuntu1) ...
229s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
229s Setting up build-essential (12.10ubuntu1) ...
229s Setting up gfortran (4:14.2.0-1ubuntu1) ...
229s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
229s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
229s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
229s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
229s Setting up r-base-dev (4.4.2-1build1) ...
229s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
229s Processing triggers for libc-bin (2.40-4ubuntu1) ...
229s Processing triggers for man-db (2.13.0-1) ...
230s Processing triggers for install-info (7.1.1-1) ...
231s autopkgtest [04:29:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
231s autopkgtest [04:29:13]: test pkg-r-autopkgtest: [-----------------------
232s Test: Try to load the R library bigmemory
232s 
232s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
232s Copyright (C) 2024 The R Foundation for Statistical Computing
232s Platform: aarch64-unknown-linux-gnu
232s 
232s R is free software and comes with ABSOLUTELY NO WARRANTY.
232s You are welcome to redistribute it under certain conditions.
232s Type 'license()' or 'licence()' for distribution details.
232s 
232s R is a collaborative project with many contributors.
232s Type 'contributors()' for more information and
232s 'citation()' on how to cite R or R packages in publications.
232s 
232s Type 'demo()' for some demos, 'help()' for on-line help, or
232s 'help.start()' for an HTML browser interface to help.
232s Type 'q()' to quit R.
232s 
232s > library('bigmemory')
232s > 
232s > 
232s Other tests are currently unsupported!
232s They will be progressively added.
232s autopkgtest [04:29:14]: test pkg-r-autopkgtest: -----------------------]
233s autopkgtest [04:29:15]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
233s pkg-r-autopkgtest    PASS
233s autopkgtest [04:29:15]: @@@@@@@@@@@@@@@@@@@@ summary
233s run-unit-test        FAIL non-zero exit status 1
233s pkg-r-autopkgtest    PASS
251s nova [W] Using flock in prodstack6-arm64
251s flock: timeout while waiting to get lock
251s Creating nova instance adt-plucky-arm64-r-cran-bigmemory-20250219-042522-juju-7f2275-prod-proposed-migration-environment-20-3d285634-3d54-49d6-8011-65e965470c6c from image adt/ubuntu-plucky-arm64-server-20250218.img (UUID db1e3557-ca0b-4978-8424-9ef955671030)...
251s nova [W] Timed out waiting for 5f27a77b-6cfa-4356-afdd-29bd79aa9ece to get deleted.