0s autopkgtest [11:50:27]: starting date and time: 2025-03-15 11:50:27+0000 0s autopkgtest [11:50:27]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [11:50:27]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.we6p7uqv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-alakazam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-4.secgroup --name adt-plucky-arm64-r-cran-alakazam-20250315-115027-juju-7f2275-prod-proposed-migration-environment-15-a5a6d4c9-81df-4ea3-9d10-8c318e4977ae --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 198s autopkgtest [11:53:45]: testbed dpkg architecture: arm64 198s autopkgtest [11:53:45]: testbed apt version: 2.9.33 199s autopkgtest [11:53:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 199s autopkgtest [11:53:46]: testbed release detected to be: None 200s autopkgtest [11:53:47]: updating testbed package index (apt update) 200s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 200s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 200s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 201s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 201s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 201s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 201s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 201s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 201s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1888 B] 201s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 201s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [353 kB] 202s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.7 kB] 202s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 202s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 202s Fetched 1052 kB in 2s (646 kB/s) 203s Reading package lists... 203s + lsb_release --codename --short 203s + RELEASE=plucky 203s + cat 203s + [ plucky != trusty ] 203s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 203s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Calculating upgrade... 205s Calculating upgrade... 205s The following packages will be upgraded: 205s python3-jinja2 strace 206s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 608 kB of archives. 206s After this operation, 11.3 kB of additional disk space will be used. 206s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 206s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 207s Fetched 608 kB in 1s (573 kB/s) 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 207s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 207s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 207s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 208s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 208s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 208s Setting up strace (6.13+ds-1ubuntu1) ... 208s Processing triggers for man-db (2.13.0-1) ... 209s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 209s + /usr/lib/apt/apt-helper analyze-pattern ?true 209s + uname -r 209s + sed s/\./\\./g 209s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 209s + apt list ?obsolete 209s + tail -n+2 209s + cut -d/ -f1+ 209s grep -v ^linux-.*6\.14\.0-10-generic.* 209s + obsolete_pkgs=linux-headers-6.11.0-8-generic 209s linux-headers-6.11.0-8 209s linux-image-6.11.0-8-generic 209s linux-modules-6.11.0-8-generic 209s linux-tools-6.11.0-8-generic 209s linux-tools-6.11.0-8 209s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 210s Solving dependencies... 210s The following packages will be REMOVED: 210s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 210s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 210s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 210s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 211s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 211s After this operation, 267 MB disk space will be freed. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 211s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 211s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 211s Removing libpython3.12t64:arm64 (3.12.9-1) ... 211s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 211s Removing libnsl2:arm64 (1.3.0-3build3) ... 211s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 211s Removing libunwind8:arm64 (1.6.2-3.1) ... 211s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 211s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 213s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 213s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 213s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 213s /etc/kernel/postrm.d/initramfs-tools: 213s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 213s /etc/kernel/postrm.d/zz-flash-kernel: 213s flash-kernel: Kernel 6.11.0-8-generic has been removed. 213s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 214s /etc/kernel/postrm.d/zz-update-grub: 214s Sourcing file `/etc/default/grub' 214s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 214s Generating grub configuration file ... 214s Found linux image: /boot/vmlinuz-6.14.0-10-generic 214s Found initrd image: /boot/initrd.img-6.14.0-10-generic 214s Warning: os-prober will not be executed to detect other bootable partitions. 214s Systems on them will not be added to the GRUB boot configuration. 214s Check GRUB_DISABLE_OS_PROBER documentation entry. 214s Adding boot menu entry for UEFI Firmware Settings ... 214s done 214s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 215s Processing triggers for libc-bin (2.41-1ubuntu1) ...+ grep -q trusty /etc/lsb-release 215s + [ ! -d /usr/share/doc/unattended-upgrades ] 215s + [ ! -d /usr/share/doc/lxd ] 215s + [ ! -d /usr/share/doc/lxd-client ] 215s + [ ! -d /usr/share/doc/snapd ] 215s + type iptables 215s + cat 215s + chmod 755 /etc/rc.local 215s + . /etc/rc.local 215s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 215s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 215s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 215s + uname -m 215s + [ aarch64 = ppc64le ] 215s + [ -d /run/systemd/system ] 215s + systemd-detect-virt --quiet --vm 215s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 215s + cat 215s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 215s + echo COMPRESS=lz4 215s autopkgtest [11:54:02]: upgrading testbed (apt dist-upgrade and autopurge) 215s 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 215s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 215s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 215s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 215s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 217s Entering ResolveByKeep 217s 218s Calculating upgrade... 218s The following packages will be upgraded: 218s libc-bin libc-dev-bin libc6 libc6-dev locales 218s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 218s Need to get 9530 kB of archives. 218s After this operation, 0 B of additional disk space will be used. 218s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 220s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 220s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 224s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 225s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 230s Preconfiguring packages ... 230s Fetched 9530 kB in 11s (835 kB/s) 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 230s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 230s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 230s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 230s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 230s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 230s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 231s Setting up libc6:arm64 (2.41-1ubuntu2) ... 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 231s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 231s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 231s Setting up libc-bin (2.41-1ubuntu2) ... 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 231s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 231s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 231s Setting up locales (2.41-1ubuntu2) ... 232s Generating locales (this might take a while)... 234s en_US.UTF-8... done 234s Generation complete. 234s Setting up libc-dev-bin (2.41-1ubuntu2) ... 234s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 234s Processing triggers for man-db (2.13.0-1) ... 235s Processing triggers for systemd (257.3-1ubuntu3) ... 236s Reading package lists... 236s Building dependency tree... 236s Reading state information... 237s Starting pkgProblemResolver with broken count: 0 237s Starting 2 pkgProblemResolver with broken count: 0 237s Done 237s Solving dependencies... 238s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s autopkgtest [11:54:25]: rebooting testbed after setup commands that affected boot 261s autopkgtest [11:54:48]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 264s autopkgtest [11:54:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-alakazam 268s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-alakazam 1.3.0-1 (dsc) [2387 B] 268s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-alakazam 1.3.0-1 (tar) [2076 kB] 268s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-alakazam 1.3.0-1 (diff) [14.2 kB] 268s gpgv: Signature made Thu Oct 12 13:40:03 2023 UTC 268s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 268s gpgv: issuer "tille@debian.org" 268s gpgv: Can't check signature: No public key 268s dpkg-source: warning: cannot verify inline signature for ./r-cran-alakazam_1.3.0-1.dsc: no acceptable signature found 268s autopkgtest [11:54:55]: testing package r-cran-alakazam version 1.3.0-1 269s autopkgtest [11:54:56]: build not needed 278s autopkgtest [11:55:05]: test pkg-r-autopkgtest: preparing testbed 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 279s Starting pkgProblemResolver with broken count: 0 279s Starting 2 pkgProblemResolver with broken count: 0 279s Done 280s The following NEW packages will be installed: 280s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 280s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 280s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 280s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 280s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 280s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 280s javascript-common libamd3 libasan8 libblas-dev libblas3 libboost-dev 280s libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1 280s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 280s libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 280s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 280s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 280s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 280s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 280s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 280s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 280s liblapack-dev liblapack3 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev 280s libmpc3 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 280s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 280s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev 280s libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 libtcl8.6 280s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 280s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 280s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 280s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 280s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings 280s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 280s r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges 280s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays 280s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 280s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-ade4 280s r-cran-airr r-cran-alakazam r-cran-ape r-cran-askpass r-cran-base64enc 280s r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-brio r-cran-bslib 280s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-codetools 280s r-cran-colorspace r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 280s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-evaluate 280s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-formatr 280s r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics 280s r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr r-cran-hms 280s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-igraph r-cran-isoband 280s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 280s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 280s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 280s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 280s r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig 280s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-prettyunits 280s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 280s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 280s r-cran-rcpparmadillo r-cran-readr r-cran-rlang r-cran-rmarkdown 280s r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr 280s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-sp r-cran-stringi 280s r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 280s r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs 280s r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun 280s r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 280s 0 upgraded, 267 newly installed, 0 to remove and 0 not upgraded. 280s Need to get 324 MB of archives. 280s After this operation, 1100 MB of additional disk space will be used. 280s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 281s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 281s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 296s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 296s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 296s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 296s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 296s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 296s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 296s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 301s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 302s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 307s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 308s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 310s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 313s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 339s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 340s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 340s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 340s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 343s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 357s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 357s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 357s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 357s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 357s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 357s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 357s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 358s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 359s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 359s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 359s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 359s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 360s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 362s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 362s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 363s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 376s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 376s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 376s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 376s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 376s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 376s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [13.2 kB] 376s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-3 [26.1 kB] 377s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 377s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 377s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 389s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 389s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 389s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 389s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 390s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 390s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 390s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 390s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [18.3 kB] 390s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 390s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 390s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 390s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 390s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB] 391s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 391s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 391s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 391s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 391s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 406s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 406s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 406s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 406s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 406s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 406s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 406s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 406s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 407s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 407s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 407s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 407s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 408s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 408s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 408s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 408s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 408s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 408s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 408s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 408s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 411s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 415s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 415s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 415s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 416s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 416s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 416s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB] 416s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB] 416s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB] 416s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 416s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 416s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 417s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 417s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 417s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 418s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 418s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 419s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 419s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 419s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 419s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 419s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 420s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 420s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 421s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 421s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 421s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 421s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 421s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 422s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 422s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 422s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 422s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 454s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 454s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 454s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 455s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 455s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 455s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 455s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 483s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 483s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 483s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 483s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 484s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 484s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 484s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 484s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 486s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 486s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 486s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 486s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 486s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 486s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 486s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 486s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 487s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 488s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 489s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 490s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 490s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 490s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 490s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 490s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 490s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 490s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 490s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 491s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 491s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 491s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 491s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 497s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 499s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 499s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 505s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 506s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 508s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 508s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 508s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 508s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 509s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 509s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 510s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 511s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 512s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 512s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 512s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 514s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 515s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 516s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pixmap all 0.4-13-1 [213 kB] 516s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 517s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 517s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 518s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.3-1-1 [843 kB] 518s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ade4 arm64 1.7-23-1 [5381 kB] 520s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 520s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 520s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 521s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 521s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 521s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 521s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 522s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 522s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 522s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 522s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 522s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 522s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 522s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 523s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 523s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 523s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 523s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 523s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 523s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 523s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 523s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 524s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 525s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 525s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-airr all 1.5.0+dfsg-1 [329 kB] 525s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 525s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 526s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 527s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 529s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 530s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 530s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 531s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 531s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 531s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 532s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 532s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 535s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 535s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ape arm64 5.8-1-1 [2901 kB] 537s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 537s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 537s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB] 539s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-segmented all 2.1-4-1 [1376 kB] 539s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-seqinr arm64 4.2-36-1 [4013 kB] 540s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 540s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 541s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 541s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-alakazam arm64 1.3.0-1 [2407 kB] 541s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 541s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 541s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 542s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 542s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 542s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 542s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 542s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 542s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 542s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 542s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 543s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 543s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 543s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 543s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 543s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 543s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 544s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 544s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 544s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 544s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 544s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 544s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 544s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 544s Get:253 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 545s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 545s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 545s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 545s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 545s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 545s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 545s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 545s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 545s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 545s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 545s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 546s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 546s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 546s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 547s Preconfiguring packages ... 547s Fetched 324 MB in 4min 27s (1216 kB/s) 547s Selecting previously unselected package libisl23:arm64. 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 547s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 547s Unpacking libisl23:arm64 (0.27-1) ... 547s Selecting previously unselected package libmpc3:arm64. 547s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 547s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 547s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 547s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 547s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 547s Selecting previously unselected package cpp-14. 547s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 547s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 547s Selecting previously unselected package cpp-aarch64-linux-gnu. 547s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 547s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 547s Selecting previously unselected package cpp. 547s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 547s Unpacking cpp (4:14.2.0-1ubuntu1) ... 547s Selecting previously unselected package libcc1-0:arm64. 547s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 547s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 547s Selecting previously unselected package libgomp1:arm64. 548s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package libitm1:arm64. 548s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package libasan8:arm64. 548s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package liblsan0:arm64. 548s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package libtsan2:arm64. 548s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package libubsan1:arm64. 548s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package libhwasan0:arm64. 548s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 548s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 548s Selecting previously unselected package libgcc-14-dev:arm64. 548s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 548s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 548s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 548s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 548s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 549s Selecting previously unselected package gcc-14. 549s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 549s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 549s Selecting previously unselected package gcc-aarch64-linux-gnu. 549s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 549s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 549s Selecting previously unselected package gcc. 549s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 549s Unpacking gcc (4:14.2.0-1ubuntu1) ... 549s Selecting previously unselected package libstdc++-14-dev:arm64. 549s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 549s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 549s Selecting previously unselected package g++-14-aarch64-linux-gnu. 549s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 549s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 549s Selecting previously unselected package g++-14. 549s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 549s Unpacking g++-14 (14.2.0-17ubuntu3) ... 549s Selecting previously unselected package g++-aarch64-linux-gnu. 549s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 549s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 549s Selecting previously unselected package g++. 549s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 549s Unpacking g++ (4:14.2.0-1ubuntu1) ... 549s Selecting previously unselected package build-essential. 549s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 549s Unpacking build-essential (12.10ubuntu1) ... 549s Selecting previously unselected package dctrl-tools. 549s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 549s Unpacking dctrl-tools (2.24-3build3) ... 549s Selecting previously unselected package fonts-dejavu-mono. 549s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 549s Unpacking fonts-dejavu-mono (2.37-8) ... 549s Selecting previously unselected package fonts-dejavu-core. 549s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 549s Unpacking fonts-dejavu-core (2.37-8) ... 549s Selecting previously unselected package fontconfig-config. 549s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 550s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 550s Selecting previously unselected package libfontconfig1:arm64. 550s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 550s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 550s Selecting previously unselected package fontconfig. 550s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 550s Unpacking fontconfig (2.15.0-2ubuntu1) ... 550s Selecting previously unselected package fonts-font-awesome. 550s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 550s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 550s Selecting previously unselected package fonts-glyphicons-halflings. 550s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 550s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 550s Selecting previously unselected package fonts-mathjax. 550s Preparing to unpack .../033-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 550s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 550s Selecting previously unselected package libgfortran5:arm64. 550s Preparing to unpack .../034-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 550s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 550s Selecting previously unselected package libgfortran-14-dev:arm64. 550s Preparing to unpack .../035-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 550s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 550s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 550s Preparing to unpack .../036-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 550s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 550s Selecting previously unselected package gfortran-14. 550s Preparing to unpack .../037-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 550s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 550s Selecting previously unselected package gfortran-aarch64-linux-gnu. 550s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 550s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 550s Selecting previously unselected package gfortran. 550s Preparing to unpack .../039-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 550s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 550s Selecting previously unselected package icu-devtools. 550s Preparing to unpack .../040-icu-devtools_76.1-1ubuntu2_arm64.deb ... 550s Unpacking icu-devtools (76.1-1ubuntu2) ... 550s Selecting previously unselected package javascript-common. 550s Preparing to unpack .../041-javascript-common_12_all.deb ... 550s Unpacking javascript-common (12) ... 550s Selecting previously unselected package libsuitesparseconfig7:arm64. 550s Preparing to unpack .../042-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_arm64.deb ... 550s Unpacking libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 551s Selecting previously unselected package libamd3:arm64. 551s Preparing to unpack .../043-libamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 551s Unpacking libamd3:arm64 (1:7.8.3+dfsg-3) ... 551s Selecting previously unselected package libblas3:arm64. 551s Preparing to unpack .../044-libblas3_3.12.1-2_arm64.deb ... 551s Unpacking libblas3:arm64 (3.12.1-2) ... 551s Selecting previously unselected package libblas-dev:arm64. 551s Preparing to unpack .../045-libblas-dev_3.12.1-2_arm64.deb ... 551s Unpacking libblas-dev:arm64 (3.12.1-2) ... 551s Selecting previously unselected package libboost1.83-dev:arm64. 551s Preparing to unpack .../046-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 551s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 552s Selecting previously unselected package libboost-dev:arm64. 552s Preparing to unpack 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unpack .../100-libpkgconf3_1.8.1-4_arm64.deb ... 555s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 555s Selecting previously unselected package zlib1g-dev:arm64. 555s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 555s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 555s Selecting previously unselected package libpng-dev:arm64. 555s Preparing to unpack .../102-libpng-dev_1.6.47-1_arm64.deb ... 555s Unpacking libpng-dev:arm64 (1.6.47-1) ... 555s Selecting previously unselected package libreadline-dev:arm64. 555s Preparing to unpack .../103-libreadline-dev_8.2-6_arm64.deb ... 555s Unpacking libreadline-dev:arm64 (8.2-6) ... 555s Selecting previously unselected package libsharpyuv0:arm64. 555s Preparing to unpack .../104-libsharpyuv0_1.5.0-0.1_arm64.deb ... 555s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 555s Selecting previously unselected package libsm6:arm64. 555s Preparing to unpack .../105-libsm6_2%3a1.2.4-1_arm64.deb ... 555s 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package libxss1:arm64. 556s Preparing to unpack .../111-libxss1_1%3a1.2.3-1build3_arm64.deb ... 556s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 556s Selecting previously unselected package libtk8.6:arm64. 556s Preparing to unpack .../112-libtk8.6_8.6.16-1_arm64.deb ... 556s Unpacking libtk8.6:arm64 (8.6.16-1) ... 556s Selecting previously unselected package libxt6t64:arm64. 556s Preparing to unpack .../113-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 556s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 556s Selecting previously unselected package zip. 556s Preparing to unpack .../114-zip_3.0-14ubuntu2_arm64.deb ... 556s Unpacking zip (3.0-14ubuntu2) ... 556s Selecting previously unselected package unzip. 556s Preparing to unpack .../115-unzip_6.0-28ubuntu6_arm64.deb ... 556s Unpacking unzip (6.0-28ubuntu6) ... 556s Selecting previously unselected package xdg-utils. 556s Preparing to unpack .../116-xdg-utils_1.2.1-2ubuntu1_all.deb ... 556s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 556s Selecting previously unselected package r-base-core. 556s Preparing to unpack .../117-r-base-core_4.4.3-1_arm64.deb ... 556s Unpacking r-base-core (4.4.3-1) ... 556s Selecting previously unselected package r-cran-littler. 556s Preparing to unpack .../118-r-cran-littler_0.3.20-2_arm64.deb ... 556s Unpacking r-cran-littler (0.3.20-2) ... 556s Selecting previously unselected package littler. 556s Preparing to unpack .../119-littler_0.3.20-2_all.deb ... 556s Unpacking littler (0.3.20-2) ... 556s Selecting previously unselected package node-bootstrap-sass. 556s Preparing to unpack .../120-node-bootstrap-sass_3.4.3-2_all.deb ... 556s Unpacking node-bootstrap-sass (3.4.3-2) ... 556s Selecting previously unselected package node-html5shiv. 556s Preparing to unpack .../121-node-html5shiv_3.7.3+dfsg-5_all.deb ... 556s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 556s Selecting previously unselected package node-normalize.css. 556s Preparing to unpack .../122-node-normalize.css_8.0.1-5_all.deb ... 556s Unpacking node-normalize.css (8.0.1-5) ... 556s Selecting previously unselected package pandoc-data. 556s Preparing to unpack .../123-pandoc-data_3.1.11.1-3build1_all.deb ... 556s Unpacking pandoc-data (3.1.11.1-3build1) ... 556s Selecting previously unselected package pandoc. 556s Preparing to unpack .../124-pandoc_3.1.11.1+ds-2_arm64.deb ... 556s Unpacking pandoc (3.1.11.1+ds-2) ... 557s Selecting previously unselected package liblzma-dev:arm64. 557s Preparing to unpack .../125-liblzma-dev_5.6.4-1_arm64.deb ... 557s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 557s Selecting previously unselected package pkgconf-bin. 557s Preparing to unpack .../126-pkgconf-bin_1.8.1-4_arm64.deb ... 557s Unpacking pkgconf-bin (1.8.1-4) ... 558s Selecting previously unselected package pkgconf:arm64. 558s Preparing to unpack .../127-pkgconf_1.8.1-4_arm64.deb ... 558s Unpacking pkgconf:arm64 (1.8.1-4) ... 558s Selecting previously unselected package libtirpc-dev:arm64. 558s Preparing to unpack .../128-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 558s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 558s Selecting previously unselected package r-base-dev. 558s Preparing to unpack .../129-r-base-dev_4.4.3-1_all.deb ... 558s Unpacking r-base-dev (4.4.3-1) ... 558s Selecting previously unselected package pkg-r-autopkgtest. 558s Preparing to unpack .../130-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 558s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 558s Selecting previously unselected package r-bioc-biocgenerics. 558s Preparing to unpack .../131-r-bioc-biocgenerics_0.52.0-2_all.deb ... 558s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 558s Selecting previously unselected package r-bioc-biobase. 558s Preparing to unpack .../132-r-bioc-biobase_2.66.0-2_arm64.deb ... 558s Unpacking r-bioc-biobase (2.66.0-2) ... 558s Selecting previously unselected package r-cran-formatr. 558s Preparing to unpack .../133-r-cran-formatr_1.14-2_all.deb ... 558s Unpacking r-cran-formatr (1.14-2) ... 558s Selecting previously unselected package r-cran-lambda.r. 558s Preparing to unpack .../134-r-cran-lambda.r_1.2.4-2build1_all.deb ... 558s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 558s Selecting previously unselected package r-cran-futile.options. 558s Preparing to unpack .../135-r-cran-futile.options_1.0.1-3build1_all.deb ... 558s Unpacking r-cran-futile.options (1.0.1-3build1) ... 558s Selecting previously unselected package r-cran-futile.logger. 558s Preparing to unpack .../136-r-cran-futile.logger_1.4.3-4build1_all.deb ... 558s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 558s Selecting previously unselected package r-cran-snow. 558s Preparing to unpack .../137-r-cran-snow_1%3a0.4.4-2_all.deb ... 558s Unpacking r-cran-snow (1:0.4.4-2) ... 558s Selecting previously unselected package r-cran-codetools. 558s Preparing to unpack .../138-r-cran-codetools_0.2-20-1_all.deb ... 558s Unpacking r-cran-codetools (0.2-20-1) ... 558s Selecting previously unselected package r-cran-bh. 558s Preparing to unpack .../139-r-cran-bh_1.84.0-1_all.deb ... 558s Unpacking r-cran-bh (1.84.0-1) ... 558s Selecting previously unselected package r-cran-cpp11. 558s Preparing to unpack .../140-r-cran-cpp11_0.5.2-1_all.deb ... 558s Unpacking r-cran-cpp11 (0.5.2-1) ... 558s Selecting previously unselected package r-bioc-biocparallel. 558s Preparing to unpack .../141-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 558s Unpacking r-bioc-biocparallel (1.40.0-2) ... 558s Selecting previously unselected package r-bioc-s4vectors. 558s Preparing to unpack .../142-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 558s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 558s Selecting previously unselected package r-bioc-iranges. 558s Preparing to unpack .../143-r-bioc-iranges_2.40.1-2_arm64.deb ... 558s Unpacking r-bioc-iranges (2.40.1-2) ... 558s Selecting previously unselected package r-bioc-zlibbioc. 558s Preparing to unpack .../144-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 558s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 558s Selecting previously unselected package r-bioc-xvector. 558s Preparing to unpack .../145-r-bioc-xvector_0.46.0-2_arm64.deb ... 558s Unpacking r-bioc-xvector (0.46.0-2) ... 558s Selecting previously unselected package r-cran-curl. 558s Preparing to unpack .../146-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 558s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 558s Selecting previously unselected package r-cran-jsonlite. 558s Preparing to unpack .../147-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 558s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 558s Selecting previously unselected package r-cran-mime. 558s Preparing to unpack .../148-r-cran-mime_0.12-2_arm64.deb ... 558s Unpacking r-cran-mime (0.12-2) ... 559s Selecting previously unselected package r-cran-sys. 559s Preparing to unpack .../149-r-cran-sys_3.4.3-1_arm64.deb ... 559s Unpacking r-cran-sys (3.4.3-1) ... 559s Selecting previously unselected package r-cran-askpass. 559s Preparing to unpack .../150-r-cran-askpass_1.2.1-1_arm64.deb ... 559s Unpacking r-cran-askpass (1.2.1-1) ... 559s Selecting previously unselected package r-cran-openssl. 559s Preparing to unpack .../151-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 559s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 559s Selecting previously unselected package r-cran-r6. 559s Preparing to unpack .../152-r-cran-r6_2.6.1-1_all.deb ... 559s Unpacking r-cran-r6 (2.6.1-1) ... 559s Selecting previously unselected package r-cran-httr. 559s Preparing to unpack .../153-r-cran-httr_1.4.7+dfsg-1_all.deb ... 559s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 559s Selecting previously unselected package r-bioc-ucsc.utils. 559s Preparing to unpack .../154-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 559s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 559s Selecting previously unselected package r-bioc-genomeinfodbdata. 559s Preparing to unpack .../155-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 559s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 559s Selecting previously unselected package r-bioc-genomeinfodb. 559s Preparing to unpack .../156-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 559s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 559s Selecting previously unselected package r-cran-crayon. 559s Preparing to unpack .../157-r-cran-crayon_1.5.3-1_all.deb ... 559s Unpacking r-cran-crayon (1.5.3-1) ... 559s Selecting previously unselected package r-bioc-biostrings. 559s Preparing to unpack .../158-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 559s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 559s Selecting previously unselected package r-cran-lattice. 559s Preparing to unpack .../159-r-cran-lattice_0.22-6-1_arm64.deb ... 559s Unpacking r-cran-lattice (0.22-6-1) ... 559s Selecting previously unselected package r-cran-matrix. 559s Preparing to unpack .../160-r-cran-matrix_1.7-3-1_arm64.deb ... 559s Unpacking r-cran-matrix (1.7-3-1) ... 559s Selecting previously unselected package r-cran-matrixstats. 559s Preparing to unpack .../161-r-cran-matrixstats_1.5.0-1_arm64.deb ... 559s Unpacking r-cran-matrixstats (1.5.0-1) ... 559s Selecting previously unselected package r-bioc-matrixgenerics. 559s Preparing to unpack .../162-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 559s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 559s Selecting previously unselected package r-cran-abind. 559s Preparing to unpack .../163-r-cran-abind_1.4-8-1_all.deb ... 559s Unpacking r-cran-abind (1.4-8-1) ... 559s Selecting previously unselected package r-bioc-s4arrays. 559s Preparing to unpack .../164-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 559s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 559s Selecting previously unselected package r-bioc-sparsearray. 559s Preparing to unpack .../165-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 559s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 559s Selecting previously unselected package r-bioc-delayedarray. 559s Preparing to unpack .../166-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 559s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 560s Selecting previously unselected package r-bioc-genomicranges. 560s Preparing to unpack .../167-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 560s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 560s Selecting previously unselected package r-bioc-summarizedexperiment. 560s Preparing to unpack .../168-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 560s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 560s Selecting previously unselected package r-cran-bitops. 560s Preparing to unpack .../169-r-cran-bitops_1.0-9-1_arm64.deb ... 560s Unpacking r-cran-bitops (1.0-9-1) ... 560s Selecting previously unselected package r-bioc-rhtslib. 560s Preparing to unpack .../170-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 560s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 560s Selecting previously unselected package r-bioc-rsamtools. 560s Preparing to unpack .../171-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 560s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 560s Selecting previously unselected package r-bioc-genomicalignments. 560s Preparing to unpack .../172-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 560s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 560s Selecting previously unselected package r-cran-mass. 560s Preparing to unpack .../173-r-cran-mass_7.3-64-1_arm64.deb ... 560s Unpacking r-cran-mass (7.3-64-1) ... 560s Selecting previously unselected package r-cran-pixmap. 560s Preparing to unpack .../174-r-cran-pixmap_0.4-13-1_all.deb ... 560s Unpacking r-cran-pixmap (0.4-13-1) ... 560s Selecting previously unselected package r-cran-sp. 560s Preparing to unpack .../175-r-cran-sp_1%3a2.2-0+dfsg-1_arm64.deb ... 560s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 560s Selecting previously unselected package r-cran-pkgkitten. 560s Preparing to unpack .../176-r-cran-pkgkitten_0.2.4-1_all.deb ... 560s Unpacking r-cran-pkgkitten (0.2.4-1) ... 560s Selecting previously unselected package r-cran-rcpp. 560s Preparing to unpack .../177-r-cran-rcpp_1.0.14-1_arm64.deb ... 560s Unpacking r-cran-rcpp (1.0.14-1) ... 560s Selecting previously unselected package r-cran-rcpparmadillo. 560s Preparing to unpack .../178-r-cran-rcpparmadillo_14.2.3-1-1_arm64.deb ... 560s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 560s Selecting previously unselected package r-cran-ade4. 560s Preparing to unpack .../179-r-cran-ade4_1.7-23-1_arm64.deb ... 560s Unpacking r-cran-ade4 (1.7-23-1) ... 560s Selecting previously unselected package r-cran-cli. 560s Preparing to unpack .../180-r-cran-cli_3.6.4-1_arm64.deb ... 560s Unpacking r-cran-cli (3.6.4-1) ... 560s Selecting previously unselected package r-cran-clipr. 560s Preparing to unpack .../181-r-cran-clipr_0.8.0-1_all.deb ... 560s Unpacking r-cran-clipr (0.8.0-1) ... 560s Selecting previously unselected package r-cran-glue. 560s Preparing to unpack .../182-r-cran-glue_1.8.0-1_arm64.deb ... 560s Unpacking r-cran-glue (1.8.0-1) ... 561s Selecting previously unselected package r-cran-rlang. 561s Preparing to unpack .../183-r-cran-rlang_1.1.5-1_arm64.deb ... 561s Unpacking r-cran-rlang (1.1.5-1) ... 561s Selecting previously unselected package r-cran-lifecycle. 561s Preparing to unpack .../184-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 561s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 561s Selecting previously unselected package r-cran-pkgconfig. 561s Preparing to unpack .../185-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 561s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 561s Selecting previously unselected package r-cran-vctrs. 561s Preparing to unpack .../186-r-cran-vctrs_0.6.5-1_arm64.deb ... 561s Unpacking r-cran-vctrs (0.6.5-1) ... 561s Selecting previously unselected package r-cran-hms. 561s Preparing to unpack .../187-r-cran-hms_1.1.3-1_all.deb ... 561s Unpacking r-cran-hms (1.1.3-1) ... 561s Selecting previously unselected package r-cran-fansi. 561s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_arm64.deb ... 561s Unpacking r-cran-fansi (1.0.5-1) ... 561s Selecting previously unselected package r-cran-magrittr. 561s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 561s Unpacking r-cran-magrittr (2.0.3-1) ... 561s Selecting previously unselected package r-cran-utf8. 561s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_arm64.deb ... 561s Unpacking r-cran-utf8 (1.2.4-1) ... 561s Selecting previously unselected package r-cran-pillar. 561s Preparing to unpack .../191-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 561s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 561s Selecting previously unselected package r-cran-tibble. 561s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 561s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 561s Selecting previously unselected package r-cran-bit. 561s Preparing to unpack .../193-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 561s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 561s Selecting previously unselected package r-cran-bit64. 561s Preparing to unpack .../194-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 561s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 561s Selecting previously unselected package r-cran-withr. 561s Preparing to unpack .../195-r-cran-withr_3.0.2+dfsg-1_all.deb ... 561s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 561s Selecting previously unselected package r-cran-tidyselect. 561s Preparing to unpack .../196-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 561s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 561s Selecting previously unselected package r-cran-tzdb. 561s Preparing to unpack .../197-r-cran-tzdb_0.4.0-2_arm64.deb ... 561s Unpacking r-cran-tzdb (0.4.0-2) ... 561s Selecting previously unselected package r-cran-prettyunits. 561s Preparing to unpack .../198-r-cran-prettyunits_1.2.0-1_all.deb ... 561s Unpacking r-cran-prettyunits (1.2.0-1) ... 561s Selecting previously unselected package r-cran-progress. 561s Preparing to unpack .../199-r-cran-progress_1.2.3-1_all.deb ... 561s Unpacking r-cran-progress (1.2.3-1) ... 561s Selecting previously unselected package r-cran-vroom. 561s Preparing to unpack .../200-r-cran-vroom_1.6.5-1_arm64.deb ... 561s Unpacking r-cran-vroom (1.6.5-1) ... 561s Selecting previously unselected package r-cran-readr. 561s Preparing to unpack .../201-r-cran-readr_2.1.5-1_arm64.deb ... 561s Unpacking r-cran-readr (2.1.5-1) ... 561s Selecting previously unselected package r-cran-stringi. 561s Preparing to unpack .../202-r-cran-stringi_1.8.4-1build1_arm64.deb ... 561s Unpacking r-cran-stringi (1.8.4-1build1) ... 562s Selecting previously unselected package r-cran-yaml. 562s Preparing to unpack .../203-r-cran-yaml_2.3.10-1_arm64.deb ... 562s Unpacking r-cran-yaml (2.3.10-1) ... 562s Selecting previously unselected package r-cran-airr. 562s Preparing to unpack .../204-r-cran-airr_1.5.0+dfsg-1_all.deb ... 562s Unpacking r-cran-airr (1.5.0+dfsg-1) ... 562s Selecting previously unselected package r-cran-gtable. 562s Preparing to unpack .../205-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 562s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 562s Selecting previously unselected package r-cran-isoband. 562s Preparing to unpack .../206-r-cran-isoband_0.2.7-1_arm64.deb ... 562s Unpacking r-cran-isoband (0.2.7-1) ... 562s Selecting previously unselected package r-cran-nlme. 562s Preparing to unpack .../207-r-cran-nlme_3.1.167-1_arm64.deb ... 562s Unpacking r-cran-nlme (3.1.167-1) ... 562s Selecting previously unselected package r-cran-mgcv. 562s Preparing to unpack .../208-r-cran-mgcv_1.9-1-1_arm64.deb ... 562s Unpacking r-cran-mgcv (1.9-1-1) ... 562s Selecting previously unselected package r-cran-farver. 562s Preparing to unpack .../209-r-cran-farver_2.1.2-1_arm64.deb ... 562s Unpacking r-cran-farver (2.1.2-1) ... 562s Selecting previously unselected package r-cran-labeling. 562s Preparing to unpack .../210-r-cran-labeling_0.4.3-1_all.deb ... 562s Unpacking r-cran-labeling (0.4.3-1) ... 562s Selecting previously unselected package r-cran-colorspace. 562s Preparing to unpack .../211-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 562s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 562s Selecting previously unselected package r-cran-munsell. 562s Preparing to unpack .../212-r-cran-munsell_0.5.1-1_all.deb ... 562s Unpacking r-cran-munsell (0.5.1-1) ... 562s Selecting previously unselected package r-cran-rcolorbrewer. 562s Preparing to unpack .../213-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 562s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 562s Selecting previously unselected package r-cran-viridislite. 562s Preparing to unpack .../214-r-cran-viridislite_0.4.2-2_all.deb ... 562s Unpacking r-cran-viridislite (0.4.2-2) ... 562s Selecting previously unselected package r-cran-scales. 562s Preparing to unpack .../215-r-cran-scales_1.3.0-1_all.deb ... 562s Unpacking r-cran-scales (1.3.0-1) ... 562s Selecting previously unselected package r-cran-ggplot2. 562s Preparing to unpack .../216-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 562s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 562s Selecting previously unselected package r-cran-digest. 562s Preparing to unpack .../217-r-cran-digest_0.6.37-1_arm64.deb ... 562s Unpacking r-cran-digest (0.6.37-1) ... 562s Selecting previously unselected package r-cran-ape. 562s Preparing to unpack .../218-r-cran-ape_5.8-1-1_arm64.deb ... 562s Unpacking r-cran-ape (5.8-1-1) ... 562s Selecting previously unselected package r-cran-generics. 562s Preparing to unpack .../219-r-cran-generics_0.1.3-1_all.deb ... 562s Unpacking r-cran-generics (0.1.3-1) ... 562s Selecting previously unselected package r-cran-dplyr. 562s Preparing to unpack .../220-r-cran-dplyr_1.1.4-4_arm64.deb ... 562s Unpacking r-cran-dplyr (1.1.4-4) ... 563s Selecting previously unselected package r-cran-igraph. 563s Preparing to unpack .../221-r-cran-igraph_2.1.4-1_arm64.deb ... 563s Unpacking r-cran-igraph (2.1.4-1) ... 563s Selecting previously unselected package r-cran-segmented. 563s Preparing to unpack .../222-r-cran-segmented_2.1-4-1_all.deb ... 563s Unpacking r-cran-segmented (2.1-4-1) ... 563s Selecting previously unselected package r-cran-seqinr. 563s Preparing to unpack .../223-r-cran-seqinr_4.2-36-1_arm64.deb ... 563s Unpacking r-cran-seqinr (4.2-36-1) ... 563s Selecting previously unselected package r-cran-purrr. 563s Preparing to unpack .../224-r-cran-purrr_1.0.4-1_arm64.deb ... 563s Unpacking r-cran-purrr (1.0.4-1) ... 563s Selecting previously unselected package r-cran-stringr. 563s Preparing to unpack .../225-r-cran-stringr_1.5.1-1_all.deb ... 563s Unpacking r-cran-stringr (1.5.1-1) ... 563s Selecting previously unselected package r-cran-tidyr. 563s Preparing to unpack .../226-r-cran-tidyr_1.3.1-1_arm64.deb ... 563s Unpacking r-cran-tidyr (1.3.1-1) ... 563s Selecting previously unselected package r-cran-alakazam. 563s Preparing to unpack .../227-r-cran-alakazam_1.3.0-1_arm64.deb ... 563s Unpacking r-cran-alakazam (1.3.0-1) ... 563s Selecting previously unselected package r-cran-base64enc. 563s Preparing to unpack .../228-r-cran-base64enc_0.1-3-3_arm64.deb ... 563s Unpacking r-cran-base64enc (0.1-3-3) ... 563s Selecting previously unselected package r-cran-brio. 563s Preparing to unpack .../229-r-cran-brio_1.1.5-1_arm64.deb ... 563s Unpacking r-cran-brio (1.1.5-1) ... 563s Selecting previously unselected package r-cran-fastmap. 563s Preparing to unpack .../230-r-cran-fastmap_1.2.0-1_arm64.deb ... 563s Unpacking r-cran-fastmap (1.2.0-1) ... 563s Selecting previously unselected package r-cran-cachem. 563s Preparing to unpack .../231-r-cran-cachem_1.1.0-1_arm64.deb ... 563s Unpacking r-cran-cachem (1.1.0-1) ... 563s Selecting previously unselected package r-cran-htmltools. 563s Preparing to unpack .../232-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 563s Unpacking r-cran-htmltools (0.5.8.1-1) ... 563s Selecting previously unselected package r-cran-jquerylib. 563s Preparing to unpack .../233-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 563s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 563s Selecting previously unselected package r-cran-memoise. 563s Preparing to unpack .../234-r-cran-memoise_2.0.1-1_all.deb ... 563s Unpacking r-cran-memoise (2.0.1-1) ... 563s Selecting previously unselected package r-cran-fs. 563s Preparing to unpack .../235-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 563s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 563s Selecting previously unselected package r-cran-rappdirs. 563s Preparing to unpack .../236-r-cran-rappdirs_0.3.3-1_arm64.deb ... 563s Unpacking r-cran-rappdirs (0.3.3-1) ... 563s Selecting previously unselected package r-cran-sass. 563s Preparing to unpack .../237-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 563s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 563s Selecting previously unselected package r-cran-bslib. 563s Preparing to unpack .../238-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 563s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 564s Selecting previously unselected package r-cran-ps. 564s Preparing to unpack .../239-r-cran-ps_1.9.0-1_arm64.deb ... 564s Unpacking r-cran-ps (1.9.0-1) ... 564s Selecting previously unselected package r-cran-processx. 564s Preparing to unpack .../240-r-cran-processx_3.8.6-1_arm64.deb ... 564s Unpacking r-cran-processx (3.8.6-1) ... 564s Selecting previously unselected package r-cran-callr. 564s Preparing to unpack .../241-r-cran-callr_3.7.6-1_all.deb ... 564s Unpacking r-cran-callr (3.7.6-1) ... 564s Selecting previously unselected package r-cran-commonmark. 564s Preparing to unpack .../242-r-cran-commonmark_1.9.2-2_arm64.deb ... 564s Unpacking r-cran-commonmark (1.9.2-2) ... 564s Selecting previously unselected package r-cran-desc. 564s Preparing to unpack .../243-r-cran-desc_1.4.3-1_all.deb ... 564s Unpacking r-cran-desc (1.4.3-1) ... 564s Selecting previously unselected package r-cran-diffobj. 564s Preparing to unpack .../244-r-cran-diffobj_0.3.5-1_arm64.deb ... 564s Unpacking r-cran-diffobj (0.3.5-1) ... 564s Selecting previously unselected package r-cran-evaluate. 564s Preparing to unpack .../245-r-cran-evaluate_1.0.3-1_all.deb ... 564s Unpacking r-cran-evaluate (1.0.3-1) ... 564s Selecting previously unselected package r-cran-fontawesome. 564s Preparing to unpack .../246-r-cran-fontawesome_0.5.3-1_all.deb ... 564s Unpacking r-cran-fontawesome (0.5.3-1) ... 564s Selecting previously unselected package r-cran-xfun. 564s Preparing to unpack .../247-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 564s Unpacking r-cran-xfun (0.51+dfsg-1) ... 564s Selecting previously unselected package r-cran-highr. 564s Preparing to unpack .../248-r-cran-highr_0.11+dfsg-1_all.deb ... 564s Unpacking r-cran-highr (0.11+dfsg-1) ... 564s Selecting previously unselected package r-cran-later. 564s Preparing to unpack .../249-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 564s Unpacking r-cran-later (1.4.1+dfsg-1) ... 564s Selecting previously unselected package r-cran-promises. 564s Preparing to unpack .../250-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 564s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 564s Selecting previously unselected package r-cran-httpuv. 564s Preparing to unpack .../251-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 564s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 564s Selecting previously unselected package libjs-mathjax. 564s Preparing to unpack .../252-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 564s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 565s Selecting previously unselected package r-cran-knitr. 565s Preparing to unpack .../253-r-cran-knitr_1.49+dfsg-1_all.deb ... 565s Unpacking r-cran-knitr (1.49+dfsg-1) ... 565s Selecting previously unselected package r-cran-pkgbuild. 565s Preparing to unpack .../254-r-cran-pkgbuild_1.4.6-1_all.deb ... 565s Unpacking r-cran-pkgbuild (1.4.6-1) ... 565s Selecting previously unselected package r-cran-rprojroot. 565s Preparing to unpack .../255-r-cran-rprojroot_2.0.4-2_all.deb ... 565s Unpacking r-cran-rprojroot (2.0.4-2) ... 565s Selecting previously unselected package r-cran-pkgload. 565s 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libjs-json (0~20221030+~1.0.8-1) ... 566s Setting up javascript-common (12) ... 566s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 566s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 566s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 566s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 566s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 566s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 566s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 566s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 566s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 566s Setting up libjs-popper.js (1.16.1+ds-6) ... 566s Setting up libxcb-render0:arm64 (1.17.0-2) ... 566s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 566s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 566s Setting up unzip (6.0-28ubuntu6) ... 566s Setting up x11-common (1:7.7+23ubuntu3) ... 566s Setting up node-html5shiv (3.7.3+dfsg-5) ... 566s Setting up libdeflate0:arm64 (1.23-1) ... 566s Setting up 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566s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 566s Setting up libpng-dev:arm64 (1.6.47-1) ... 566s Setting up libpaper-utils (2.2.5-0.3) ... 566s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 566s Setting up pkgconf:arm64 (1.8.1-4) ... 566s Setting up libthai0:arm64 (0.1.29-2build1) ... 566s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 566s Setting up pandoc (3.1.11.1+ds-2) ... 566s Setting up libglpk40:arm64 (5.0-1build2) ... 566s Setting up liblapack-dev:arm64 (3.12.1-2) ... 566s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 566s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 566s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 566s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 566s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 566s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 566s 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569s Setting up r-cran-clipr (0.8.0-1) ... 569s Setting up r-cran-commonmark (1.9.2-2) ... 569s Setting up g++-14 (14.2.0-17ubuntu3) ... 569s Setting up r-cran-r6 (2.6.1-1) ... 569s Setting up r-cran-pkgkitten (0.2.4-1) ... 569s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 569s Setting up r-cran-magrittr (2.0.3-1) ... 569s Setting up r-cran-rappdirs (0.3.3-1) ... 569s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 569s Setting up r-cran-littler (0.3.20-2) ... 569s Setting up r-cran-bh (1.84.0-1) ... 569s Setting up r-cran-fs (1.6.5+dfsg-1) ... 569s Setting up r-cran-rcpp (1.0.14-1) ... 569s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 569s Setting up r-cran-codetools (0.2-20-1) ... 569s Setting up r-cran-brio (1.1.5-1) ... 569s Setting up r-cran-diffobj (0.3.5-1) ... 569s Setting up r-bioc-biocgenerics (0.52.0-2) ... 569s Setting up r-cran-rlang (1.1.5-1) ... 569s Setting up r-cran-matrixstats (1.5.0-1) ... 569s Setting up littler (0.3.20-2) ... 569s Setting up 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569s Setting up r-cran-isoband (0.2.7-1) ... 569s Setting up r-cran-futile.logger (1.4.3-4build1) ... 569s Setting up r-cran-waldo (0.6.1-2) ... 569s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 569s Setting up r-cran-later (1.4.1+dfsg-1) ... 569s Setting up r-cran-matrix (1.7-3-1) ... 569s Setting up r-cran-htmltools (0.5.8.1-1) ... 569s Setting up r-cran-tinytex (0.56-1) ... 569s Setting up r-cran-knitr (1.49+dfsg-1) ... 569s Setting up r-cran-mgcv (1.9-1-1) ... 569s Setting up g++ (4:14.2.0-1ubuntu1) ... 569s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 569s Setting up r-cran-cachem (1.1.0-1) ... 569s Setting up r-cran-sass (0.4.9+dfsg-1) ... 569s Setting up build-essential (12.10ubuntu1) ... 569s Setting up r-cran-rcpparmadillo (14.2.3-1-1) ... 569s Setting up r-bioc-iranges (2.40.1-2) ... 569s Setting up r-cran-tzdb (0.4.0-2) ... 569s Setting up r-cran-vctrs (0.6.5-1) ... 569s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 569s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 569s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 569s Setting up r-cran-stringr (1.5.1-1) ... 569s Setting up r-bioc-biocparallel (1.40.0-2) ... 569s Setting up r-cran-callr (3.7.6-1) ... 569s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 569s Setting up r-cran-desc (1.4.3-1) ... 569s Setting up r-cran-munsell (0.5.1-1) ... 569s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 569s Setting up r-cran-fontawesome (0.5.3-1) ... 569s Setting up r-cran-igraph (2.1.4-1) ... 569s Setting up r-cran-ade4 (1.7-23-1) ... 569s Setting up gfortran (4:14.2.0-1ubuntu1) ... 569s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 569s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 569s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 569s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 569s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 569s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 569s Setting up r-cran-httr (1.4.7+dfsg-1) ... 569s Setting up r-cran-hms (1.1.3-1) ... 569s Setting up r-cran-scales (1.3.0-1) ... 569s Setting up r-cran-memoise (2.0.1-1) ... 569s Setting up r-cran-promises (1.3.2+dfsg-1) ... 569s Setting up r-cran-purrr (1.0.4-1) ... 569s Setting up r-bioc-xvector (0.46.0-2) ... 569s Setting up r-cran-pkgbuild (1.4.6-1) ... 569s Setting up r-cran-dplyr (1.1.4-4) ... 569s Setting up r-cran-progress (1.2.3-1) ... 569s Setting up r-cran-pkgload (1.4.0-1) ... 569s Setting up r-cran-vroom (1.6.5-1) ... 569s Setting up r-base-dev (4.4.3-1) ... 569s Setting up r-cran-seqinr (4.2-36-1) ... 569s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 569s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 569s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 569s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 569s Setting up r-cran-testthat (3.2.3-1) ... 569s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 569s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 569s Setting up r-cran-readr (2.1.5-1) ... 569s Setting up r-cran-tidyr (1.3.1-1) ... 569s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 569s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 569s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 569s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 569s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 569s Setting up r-cran-airr (1.5.0+dfsg-1) ... 569s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 569s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 569s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 569s Setting up r-bioc-genomicalignments (1.42.0-2) ... 569s Setting up r-cran-alakazam (1.3.0-1) ... 569s Processing triggers for man-db (2.13.0-1) ... 571s Processing triggers for install-info (7.1.1-1) ... 571s Processing triggers for libc-bin (2.41-1ubuntu2) ... 572s autopkgtest [11:59:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 572s autopkgtest [11:59:59]: test pkg-r-autopkgtest: [----------------------- 572s Test: Try to load the R library alakazam 572s 572s R version 4.4.3 (2025-02-28) -- "Trophy Case" 572s Copyright (C) 2025 The R Foundation for Statistical Computing 572s Platform: aarch64-unknown-linux-gnu 572s 572s R is free software and comes with ABSOLUTELY NO WARRANTY. 572s You are welcome to redistribute it under certain conditions. 572s Type 'license()' or 'licence()' for distribution details. 572s 572s R is a collaborative project with many contributors. 572s Type 'contributors()' for more information and 572s 'citation()' on how to cite R or R packages in publications. 572s 572s Type 'demo()' for some demos, 'help()' for on-line help, or 572s 'help.start()' for an HTML browser interface to help. 572s Type 'q()' to quit R. 572s 572s > library('alakazam') 572s Loading required package: ggplot2 580s 580s 580s To cite the alakazam package in publications, please use: 580s 580s Gupta N, Vander Heiden J, Uduman M, Gadala-Maria D, Yaari G, 580s Kleinstein S (2015). “Change-O: a toolkit for analyzing large-scale B 580s cell immunoglobulin repertoire sequencing data.” _Bioinformatics_, 580s 1-3. doi:10.1093/bioinformatics/btv359 580s . 580s 580s To cite the Ig-specific lineage reconstruction and diversity methods, 580s please use: 580s 580s Stern J, Yaari G, Vander Heiden J, Church G, Donahue W, Hintzen R, 580s Huttner A, Laman J, Nagra R, Nylander A, Pitt D, Ramanan S, Siddiqui 580s B, Vigneault F, Kleinstein S, Hafler D, O'Connor K (2014). “B cells 580s populating the multiple sclerosis brain mature in the draining 580s cervical lymph nodes.” _Science Translational Medicine_, *6*(248), 580s 248ra107. doi:10.1126/scitranslmed.3008879 580s . 580s 580s To see these entries in BibTeX format, use 'format(, 580s bibtex=TRUE)', or 'toBibtex(.)'. 580s > 580s > 580s Other tests are currently unsupported! 580s They will be progressively added. 581s autopkgtest [12:00:08]: test pkg-r-autopkgtest: -----------------------] 581s autopkgtest [12:00:08]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 581s pkg-r-autopkgtest PASS 582s autopkgtest [12:00:09]: @@@@@@@@@@@@@@@@@@@@ summary 582s pkg-r-autopkgtest PASS 601s nova [W] Using flock in prodstack6-arm64 601s Creating nova instance adt-plucky-arm64-r-cran-alakazam-20250315-115027-juju-7f2275-prod-proposed-migration-environment-15-a5a6d4c9-81df-4ea3-9d10-8c318e4977ae from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 601s nova [W] Timed out waiting for 57895606-5b75-41e0-8d4b-4fddfdaf8188 to get deleted.