0s autopkgtest [15:16:37]: starting date and time: 2025-03-15 15:16:37+0000 0s autopkgtest [15:16:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:16:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ux0nnchv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-adephylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-26.secgroup --name adt-plucky-arm64-r-cran-adephylo-20250315-151637-juju-7f2275-prod-proposed-migration-environment-2-defeb771-23a6-4456-95b3-1b66defc0410 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 117s autopkgtest [15:18:34]: testbed dpkg architecture: arm64 117s autopkgtest [15:18:34]: testbed apt version: 2.9.33 118s autopkgtest [15:18:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 118s autopkgtest [15:18:35]: testbed release detected to be: None 119s autopkgtest [15:18:36]: updating testbed package index (apt update) 119s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 120s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 120s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 120s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 120s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 120s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 120s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 120s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 120s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 120s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 120s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 120s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 121s Fetched 1094 kB in 1s (1088 kB/s) 122s Reading package lists... 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s Calculating upgrade... 125s Calculating upgrade... 125s The following packages will be upgraded: 125s python3-jinja2 strace 126s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 608 kB of archives. 126s After this operation, 11.3 kB of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 126s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 127s Fetched 608 kB in 1s (869 kB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 127s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 127s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 127s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 128s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 128s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 128s Setting up strace (6.13+ds-1ubuntu1) ... 128s Processing triggers for man-db (2.13.0-1) ... 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s Solving dependencies... 132s The following packages will be REMOVED: 132s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 132s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 132s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 132s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 132s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 132s After this operation, 267 MB disk space will be freed. 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 132s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 132s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 132s Removing libpython3.12t64:arm64 (3.12.9-1) ... 132s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 133s Removing libnsl2:arm64 (1.3.0-3build3) ... 133s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 133s Removing libunwind8:arm64 (1.6.2-3.1) ... 133s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 133s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 136s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 137s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 137s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 137s /etc/kernel/postrm.d/initramfs-tools: 137s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 137s /etc/kernel/postrm.d/zz-flash-kernel: 137s flash-kernel: Kernel 6.11.0-8-generic has been removed. 137s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 137s /etc/kernel/postrm.d/zz-update-grub: 137s Sourcing file `/etc/default/grub' 137s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 137s Generating grub configuration file ... 138s Found linux image: /boot/vmlinuz-6.14.0-10-generic 138s Found initrd image: /boot/initrd.img-6.14.0-10-generic 138s Warning: os-prober will not be executed to detect other bootable partitions. 138s Systems on them will not be added to the GRUB boot configuration. 138s Check GRUB_DISABLE_OS_PROBER documentation entry. 138s Adding boot menu entry for UEFI Firmware Settings ... 138s done 138s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 139s Processing triggers for libc-bin (2.41-1ubuntu1) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 139s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 139s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 139s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 139s autopkgtest [15:18:56]: upgrading testbed (apt dist-upgrade and autopurge) 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 143s Entering ResolveByKeep 144s 144s Calculating upgrade... 145s The following packages will be upgraded: 145s libc-bin libc-dev-bin libc6 libc6-dev locales 145s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Need to get 9530 kB of archives. 145s After this operation, 0 B of additional disk space will be used. 145s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 146s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 146s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 147s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 148s Preconfiguring packages ... 149s Fetched 9530 kB in 3s (3156 kB/s) 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 149s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 149s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 149s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 149s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 150s Setting up libc6:arm64 (2.41-1ubuntu2) ... 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 150s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 150s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 150s Setting up libc-bin (2.41-1ubuntu2) ... 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 150s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 150s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 150s Setting up locales (2.41-1ubuntu2) ... 152s Generating locales (this might take a while)... 154s en_US.UTF-8... done 154s Generation complete. 154s Setting up libc-dev-bin (2.41-1ubuntu2) ... 154s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 154s Processing triggers for man-db (2.13.0-1) ... 155s Processing triggers for systemd (257.3-1ubuntu3) ... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Starting pkgProblemResolver with broken count: 0 158s Starting 2 pkgProblemResolver with broken count: 0 158s Done 159s Solving dependencies... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s autopkgtest [15:19:17]: rebooting testbed after setup commands that affected boot 183s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 190s autopkgtest [15:19:47]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 193s autopkgtest [15:19:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adephylo 196s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adephylo 1.1-16-1 (dsc) [2181 B] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adephylo 1.1-16-1 (tar) [522 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adephylo 1.1-16-1 (diff) [3564 B] 196s gpgv: Signature made Thu Oct 12 09:10:55 2023 UTC 196s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 196s gpgv: issuer "tille@debian.org" 196s gpgv: Can't check signature: No public key 196s dpkg-source: warning: cannot verify inline signature for ./r-cran-adephylo_1.1-16-1.dsc: no acceptable signature found 196s autopkgtest [15:19:53]: testing package r-cran-adephylo version 1.1-16-1 197s autopkgtest [15:19:54]: build not needed 200s autopkgtest [15:19:57]: test run-unit-test: preparing testbed 200s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 202s Done 203s The following NEW packages will be installed: 203s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 203s fonts-font-awesome fonts-glyphicons-halflings javascript-common libamd3 203s libblas3 libcairo2 libcolamd3 libdatrie1 libdeflate0 libfontconfig1 203s libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libice6 203s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 203s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 203s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js 203s libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker 203s liblapack3 liblerc4 libltdl7 libpango-1.0-0 libpangocairo-1.0-0 203s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 203s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 203s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 203s littler node-bootstrap-sass node-html5shiv node-normalize.css r-base-core 203s r-cran-ade4 r-cran-adegenet r-cran-adephylo r-cran-ape r-cran-askpass 203s r-cran-base64enc r-cran-boot r-cran-brio r-cran-bslib r-cran-cachem 203s r-cran-callr r-cran-cli r-cran-cluster r-cran-colorspace r-cran-commonmark 203s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj 203s r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver 203s r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2 203s r-cran-glue r-cran-gtable r-cran-hms r-cran-htmltools r-cran-httpuv 203s r-cran-httr r-cran-igraph r-cran-isoband r-cran-jquerylib r-cran-jsonlite 203s r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 203s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv 203s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-permute 203s r-cran-phylobase r-cran-pillar r-cran-pixmap r-cran-pkgbuild 203s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise 203s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 203s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 203s r-cran-rcpparmadillo r-cran-reshape2 r-cran-rlang r-cran-rncl r-cran-rnexml 203s r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr 203s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr 203s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 203s r-cran-utf8 r-cran-uuid r-cran-vctrs r-cran-vegan r-cran-viridislite 203s r-cran-waldo r-cran-withr r-cran-xml r-cran-xml2 r-cran-xtable unzip 203s x11-common xdg-utils zip 203s 0 upgraded, 174 newly installed, 0 to remove and 0 not upgraded. 203s Need to get 132 MB of archives. 203s After this operation, 265 MB of additional disk space will be used. 203s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 203s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 203s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 203s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 203s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 204s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 204s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 204s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 204s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 204s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [13.2 kB] 204s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-3 [26.1 kB] 204s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 204s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 204s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 204s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 204s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 204s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 204s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [18.3 kB] 204s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 204s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 204s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 204s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 204s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB] 204s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 204s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 204s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 204s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 204s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 204s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 204s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 204s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 204s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 204s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 204s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 204s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 204s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 204s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 204s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 204s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 204s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 204s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 204s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 204s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 205s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 205s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 205s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 205s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 205s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 205s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 205s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 205s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 205s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 205s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 205s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 205s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 205s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 205s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 205s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 205s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 205s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 205s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 205s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 205s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 205s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 205s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 209s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 209s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 209s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 209s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 209s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 209s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 209s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pixmap all 0.4-13-1 [213 kB] 209s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 209s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 209s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 209s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 209s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.3-1-1 [843 kB] 209s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ade4 arm64 1.7-23-1 [5381 kB] 210s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 210s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 210s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 210s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 210s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 210s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 211s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 211s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 211s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 211s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB] 212s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 212s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 212s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ape arm64 5.8-1-1 [2901 kB] 212s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 212s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 212s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 212s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 212s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 212s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 212s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 212s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 212s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 212s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 212s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 213s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 213s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 213s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 213s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 213s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 213s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 213s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 213s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 213s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 213s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 213s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 214s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 214s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 214s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 214s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 214s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 214s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 214s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 214s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 214s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 214s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 214s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 215s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 215s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 215s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 215s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 215s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 215s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 215s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-segmented all 2.1-4-1 [1376 kB] 215s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-seqinr arm64 4.2-36-1 [4013 kB] 215s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-boot all 1.3-31-1 [635 kB] 215s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 215s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 215s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 215s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 215s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 215s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 215s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 215s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-permute all 0.9-7-1 [228 kB] 215s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB] 215s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vegan arm64 2.6-10+dfsg-1ubuntu2 [3136 kB] 215s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-adegenet arm64 2.1.11-1 [2724 kB] 215s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 215s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 215s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 215s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rncl arm64 0.8.7-1 [474 kB] 215s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 215s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 215s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 215s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 215s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 216s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 216s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB] 216s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 216s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 216s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml2 arm64 1.3.7-1 [327 kB] 216s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rnexml all 2.4.11+ds-1 [744 kB] 216s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-phylobase arm64 0.8.12-1 [686 kB] 216s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-adephylo arm64 1.1-16-1 [589 kB] 216s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 216s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 216s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 216s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 216s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 216s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 216s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 216s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 216s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 216s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 216s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 216s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 216s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 217s Preconfiguring packages ... 217s Fetched 132 MB in 13s (9986 kB/s) 217s Selecting previously unselected package fonts-dejavu-mono. 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 217s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-mono (2.37-8) ... 217s Selecting previously unselected package fonts-dejavu-core. 217s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-core (2.37-8) ... 217s Selecting previously unselected package fontconfig-config. 217s Preparing to unpack .../002-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 218s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 218s Selecting previously unselected package libfontconfig1:arm64. 218s Preparing to unpack .../003-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 218s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 218s Selecting previously unselected package fontconfig. 218s Preparing to unpack .../004-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 218s Unpacking fontconfig (2.15.0-2ubuntu1) ... 218s Selecting previously unselected package fonts-font-awesome. 218s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 218s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 218s Selecting previously unselected package fonts-glyphicons-halflings. 218s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 218s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 218s Selecting previously unselected package javascript-common. 218s Preparing to unpack .../007-javascript-common_12_all.deb ... 218s Unpacking javascript-common (12) ... 218s Selecting previously unselected package libgomp1:arm64. 218s Preparing to unpack .../008-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 218s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 218s Selecting previously unselected package libsuitesparseconfig7:arm64. 218s Preparing to unpack .../009-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_arm64.deb ... 218s Unpacking libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 218s Selecting previously unselected package libamd3:arm64. 218s Preparing to unpack .../010-libamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 218s Unpacking libamd3:arm64 (1:7.8.3+dfsg-3) ... 218s Selecting previously unselected package libblas3:arm64. 218s Preparing to unpack .../011-libblas3_3.12.1-2_arm64.deb ... 218s Unpacking libblas3:arm64 (3.12.1-2) ... 218s Selecting previously unselected package libpixman-1-0:arm64. 218s Preparing to unpack .../012-libpixman-1-0_0.44.0-3_arm64.deb ... 218s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 218s Selecting previously unselected package libxcb-render0:arm64. 218s Preparing to unpack .../013-libxcb-render0_1.17.0-2_arm64.deb ... 218s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 218s Selecting previously unselected package libxcb-shm0:arm64. 218s Preparing to unpack .../014-libxcb-shm0_1.17.0-2_arm64.deb ... 218s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 218s Selecting previously unselected package libxrender1:arm64. 218s Preparing to unpack .../015-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 218s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 218s Selecting previously unselected package libcairo2:arm64. 218s Preparing to unpack .../016-libcairo2_1.18.2-2_arm64.deb ... 218s Unpacking libcairo2:arm64 (1.18.2-2) ... 218s Selecting previously unselected package libcolamd3:arm64. 218s Preparing to unpack .../017-libcolamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 218s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 218s Selecting previously unselected package libdatrie1:arm64. 218s Preparing to unpack .../018-libdatrie1_0.2.13-3build1_arm64.deb ... 218s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 218s Selecting previously unselected package libdeflate0:arm64. 218s Preparing to unpack .../019-libdeflate0_1.23-1_arm64.deb ... 218s Unpacking libdeflate0:arm64 (1.23-1) ... 218s Selecting previously unselected package libgfortran5:arm64. 219s Preparing to unpack .../020-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 219s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 219s Selecting previously unselected package libltdl7:arm64. 219s Preparing to unpack .../021-libltdl7_2.5.4-4_arm64.deb ... 219s Unpacking libltdl7:arm64 (2.5.4-4) ... 219s Selecting previously unselected package libglpk40:arm64. 219s Preparing to unpack .../022-libglpk40_5.0-1build2_arm64.deb ... 219s Unpacking libglpk40:arm64 (5.0-1build2) ... 219s Selecting previously unselected package libgraphite2-3:arm64. 219s Preparing to unpack .../023-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 219s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 219s Selecting previously unselected package libharfbuzz0b:arm64. 219s Preparing to unpack .../024-libharfbuzz0b_10.2.0-1_arm64.deb ... 219s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 219s Selecting previously unselected package x11-common. 219s Preparing to unpack .../025-x11-common_1%3a7.7+23ubuntu3_all.deb ... 219s Unpacking x11-common (1:7.7+23ubuntu3) ... 219s Selecting previously unselected package libice6:arm64. 219s Preparing to unpack .../026-libice6_2%3a1.1.1-1_arm64.deb ... 219s Unpacking libice6:arm64 (2:1.1.1-1) ... 219s Selecting previously unselected package libjpeg-turbo8:arm64. 219s Preparing to unpack .../027-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 219s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 219s Selecting previously unselected package libjpeg8:arm64. 219s Preparing to unpack .../028-libjpeg8_8c-2ubuntu11_arm64.deb ... 219s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 219s Selecting previously unselected package libjs-bootstrap. 219s Preparing to unpack .../029-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 219s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 219s Selecting previously unselected package libjs-popper.js. 219s Preparing to unpack .../030-libjs-popper.js_1.16.1+ds-6_all.deb ... 219s Unpacking libjs-popper.js (1.16.1+ds-6) ... 219s Selecting previously unselected package libjs-bootstrap4. 219s Preparing to unpack .../031-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 219s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 219s Selecting previously unselected package libjs-d3. 219s Preparing to unpack .../032-libjs-d3_3.5.17-4_all.deb ... 219s Unpacking libjs-d3 (3.5.17-4) ... 219s Selecting previously unselected package libjs-es5-shim. 219s Preparing to unpack .../033-libjs-es5-shim_4.6.7-2_all.deb ... 219s Unpacking libjs-es5-shim (4.6.7-2) ... 219s Selecting previously unselected package libjs-highlight.js. 219s Preparing to unpack .../034-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 219s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 219s Selecting previously unselected package libjs-jquery. 219s Preparing to unpack .../035-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 219s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 219s Selecting previously unselected package libjs-jquery-datatables. 219s Preparing to unpack .../036-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 219s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 219s Selecting previously unselected package libjs-sifter.js. 219s Preparing to unpack .../037-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 219s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 219s Selecting previously unselected package libjs-microplugin.js. 219s Preparing to unpack .../038-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 219s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 219s Selecting previously unselected package libjs-jquery-selectize.js. 220s Preparing to unpack .../039-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 220s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 220s Selecting previously unselected package libjs-jquery-ui. 220s Preparing to unpack .../040-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 220s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 220s Selecting previously unselected package libjs-json. 220s Preparing to unpack .../041-libjs-json_0~20221030+~1.0.8-1_all.deb ... 220s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 220s Selecting previously unselected package liblapack3:arm64. 220s Preparing to unpack .../042-liblapack3_3.12.1-2_arm64.deb ... 220s Unpacking liblapack3:arm64 (3.12.1-2) ... 220s Selecting previously unselected package liblerc4:arm64. 220s Preparing to unpack .../043-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 220s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 220s Selecting previously unselected package libthai-data. 220s Preparing to unpack .../044-libthai-data_0.1.29-2build1_all.deb ... 220s Unpacking libthai-data (0.1.29-2build1) ... 220s Selecting previously unselected package libthai0:arm64. 220s Preparing to unpack .../045-libthai0_0.1.29-2build1_arm64.deb ... 220s Unpacking libthai0:arm64 (0.1.29-2build1) ... 220s Selecting previously unselected package libpango-1.0-0:arm64. 220s Preparing to unpack .../046-libpango-1.0-0_1.56.2-1_arm64.deb ... 220s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 220s Selecting previously unselected package libpangoft2-1.0-0:arm64. 220s Preparing to unpack .../047-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 220s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 220s Selecting previously unselected package libpangocairo-1.0-0:arm64. 220s Preparing to unpack .../048-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 220s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 220s Selecting previously unselected package libpaper2:arm64. 220s Preparing to unpack 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Selecting previously unselected package libwebp7:arm64. 220s Preparing to unpack .../055-libwebp7_1.5.0-0.1_arm64.deb ... 220s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 220s Selecting previously unselected package libtiff6:arm64. 220s Preparing to unpack .../056-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 220s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 220s Selecting previously unselected package libxft2:arm64. 220s Preparing to unpack .../057-libxft2_2.3.6-1build1_arm64.deb ... 220s Unpacking libxft2:arm64 (2.3.6-1build1) ... 220s Selecting previously unselected package libxss1:arm64. 220s Preparing to unpack .../058-libxss1_1%3a1.2.3-1build3_arm64.deb ... 220s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 221s Selecting previously unselected package libtk8.6:arm64. 221s Preparing to unpack .../059-libtk8.6_8.6.16-1_arm64.deb ... 221s Unpacking libtk8.6:arm64 (8.6.16-1) ... 221s Selecting previously unselected package libxt6t64:arm64. 221s Preparing to unpack .../060-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 221s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 221s Selecting previously unselected package zip. 221s Preparing to unpack .../061-zip_3.0-14ubuntu2_arm64.deb ... 221s Unpacking zip (3.0-14ubuntu2) ... 221s Selecting previously unselected package unzip. 221s Preparing to unpack .../062-unzip_6.0-28ubuntu6_arm64.deb ... 221s Unpacking unzip (6.0-28ubuntu6) ... 221s Selecting previously unselected package xdg-utils. 221s Preparing to unpack .../063-xdg-utils_1.2.1-2ubuntu1_all.deb ... 221s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 221s Selecting previously unselected package r-base-core. 221s Preparing to unpack .../064-r-base-core_4.4.3-1_arm64.deb ... 221s Unpacking r-base-core (4.4.3-1) ... 221s Selecting previously unselected package r-cran-littler. 221s Preparing to unpack .../065-r-cran-littler_0.3.20-2_arm64.deb ... 221s Unpacking r-cran-littler (0.3.20-2) ... 221s Selecting previously unselected package littler. 221s Preparing to unpack .../066-littler_0.3.20-2_all.deb ... 221s Unpacking littler (0.3.20-2) ... 221s Selecting previously unselected package node-bootstrap-sass. 221s Preparing to unpack .../067-node-bootstrap-sass_3.4.3-2_all.deb ... 221s Unpacking node-bootstrap-sass (3.4.3-2) ... 221s Selecting previously unselected package node-html5shiv. 221s Preparing to unpack .../068-node-html5shiv_3.7.3+dfsg-5_all.deb ... 221s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 221s Selecting previously unselected package node-normalize.css. 221s Preparing to unpack .../069-node-normalize.css_8.0.1-5_all.deb ... 221s Unpacking node-normalize.css (8.0.1-5) ... 221s Selecting previously unselected package r-cran-mass. 221s Preparing to unpack .../070-r-cran-mass_7.3-64-1_arm64.deb ... 221s Unpacking r-cran-mass (7.3-64-1) ... 221s Selecting previously unselected package r-cran-pixmap. 221s Preparing to unpack .../071-r-cran-pixmap_0.4-13-1_all.deb ... 221s Unpacking r-cran-pixmap (0.4-13-1) ... 222s Selecting previously unselected package r-cran-lattice. 222s Preparing to unpack .../072-r-cran-lattice_0.22-6-1_arm64.deb ... 222s Unpacking r-cran-lattice (0.22-6-1) ... 222s Selecting previously unselected package r-cran-sp. 222s Preparing to unpack .../073-r-cran-sp_1%3a2.2-0+dfsg-1_arm64.deb ... 222s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 222s Selecting previously unselected package r-cran-pkgkitten. 222s Preparing to unpack .../074-r-cran-pkgkitten_0.2.4-1_all.deb ... 222s Unpacking r-cran-pkgkitten (0.2.4-1) ... 222s Selecting previously unselected package r-cran-rcpp. 222s Preparing to unpack .../075-r-cran-rcpp_1.0.14-1_arm64.deb ... 222s Unpacking r-cran-rcpp (1.0.14-1) ... 222s Selecting previously unselected package r-cran-rcpparmadillo. 222s Preparing to unpack .../076-r-cran-rcpparmadillo_14.2.3-1-1_arm64.deb ... 222s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 222s Selecting previously unselected package r-cran-ade4. 222s Preparing to unpack .../077-r-cran-ade4_1.7-23-1_arm64.deb ... 222s Unpacking r-cran-ade4 (1.7-23-1) ... 222s Selecting previously unselected package r-cran-cli. 222s Preparing to unpack .../078-r-cran-cli_3.6.4-1_arm64.deb ... 222s Unpacking r-cran-cli (3.6.4-1) ... 222s Selecting previously unselected package r-cran-glue. 222s Preparing to unpack .../079-r-cran-glue_1.8.0-1_arm64.deb ... 222s Unpacking r-cran-glue (1.8.0-1) ... 222s Selecting previously unselected package r-cran-rlang. 222s Preparing to unpack .../080-r-cran-rlang_1.1.5-1_arm64.deb ... 222s Unpacking r-cran-rlang (1.1.5-1) ... 222s Selecting previously unselected package r-cran-lifecycle. 222s Preparing to unpack .../081-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 222s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 222s Selecting previously unselected package r-cran-magrittr. 222s Preparing to unpack .../082-r-cran-magrittr_2.0.3-1_arm64.deb ... 222s Unpacking r-cran-magrittr (2.0.3-1) ... 222s Selecting previously unselected package r-cran-matrix. 222s Preparing to unpack .../083-r-cran-matrix_1.7-3-1_arm64.deb ... 222s Unpacking r-cran-matrix (1.7-3-1) ... 222s Selecting previously unselected package r-cran-pkgconfig. 222s Preparing to unpack .../084-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 222s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 222s Selecting previously unselected package r-cran-vctrs. 222s Preparing to unpack .../085-r-cran-vctrs_0.6.5-1_arm64.deb ... 222s Unpacking r-cran-vctrs (0.6.5-1) ... 223s Selecting previously unselected package r-cran-cpp11. 223s Preparing to unpack .../086-r-cran-cpp11_0.5.2-1_all.deb ... 223s Unpacking r-cran-cpp11 (0.5.2-1) ... 223s Selecting previously unselected package r-cran-igraph. 223s Preparing to unpack .../087-r-cran-igraph_2.1.4-1_arm64.deb ... 223s Unpacking r-cran-igraph (2.1.4-1) ... 223s Selecting previously unselected package r-cran-nlme. 223s Preparing to unpack .../088-r-cran-nlme_3.1.167-1_arm64.deb ... 223s Unpacking r-cran-nlme (3.1.167-1) ... 223s Selecting previously unselected package r-cran-digest. 223s Preparing to unpack .../089-r-cran-digest_0.6.37-1_arm64.deb ... 223s Unpacking r-cran-digest (0.6.37-1) ... 223s Selecting previously unselected package r-cran-ape. 223s Preparing to unpack .../090-r-cran-ape_5.8-1-1_arm64.deb ... 223s Unpacking r-cran-ape (5.8-1-1) ... 223s Selecting previously unselected package r-cran-later. 223s Preparing to unpack .../091-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 223s Unpacking r-cran-later (1.4.1+dfsg-1) ... 223s Selecting previously unselected package r-cran-fastmap. 223s Preparing to unpack .../092-r-cran-fastmap_1.2.0-1_arm64.deb ... 223s Unpacking r-cran-fastmap (1.2.0-1) ... 223s Selecting previously unselected package r-cran-r6. 223s Preparing to unpack .../093-r-cran-r6_2.6.1-1_all.deb ... 223s Unpacking r-cran-r6 (2.6.1-1) ... 223s Selecting previously unselected package r-cran-promises. 223s Preparing to unpack .../094-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 223s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 223s Selecting previously unselected package r-cran-httpuv. 223s Preparing to unpack .../095-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 223s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 223s Selecting previously unselected package r-cran-mime. 223s Preparing to unpack .../096-r-cran-mime_0.12-2_arm64.deb ... 223s Unpacking r-cran-mime (0.12-2) ... 223s Selecting previously unselected package r-cran-jsonlite. 223s Preparing to unpack .../097-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 223s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 223s Selecting previously unselected package r-cran-xtable. 223s Preparing to unpack .../098-r-cran-xtable_1%3a1.8-4-2_all.deb ... 223s Unpacking r-cran-xtable (1:1.8-4-2) ... 223s Selecting previously unselected package r-cran-base64enc. 223s Preparing to unpack .../099-r-cran-base64enc_0.1-3-3_arm64.deb ... 223s Unpacking r-cran-base64enc (0.1-3-3) ... 223s Selecting previously unselected package r-cran-htmltools. 223s Preparing to unpack .../100-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 223s Unpacking r-cran-htmltools (0.5.8.1-1) ... 223s Selecting previously unselected package r-cran-fontawesome. 223s Preparing to unpack .../101-r-cran-fontawesome_0.5.3-1_all.deb ... 223s Unpacking r-cran-fontawesome (0.5.3-1) ... 223s Selecting previously unselected package r-cran-sourcetools. 223s Preparing to unpack .../102-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 223s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 224s Selecting previously unselected package r-cran-crayon. 224s Preparing to unpack .../103-r-cran-crayon_1.5.3-1_all.deb ... 224s Unpacking r-cran-crayon (1.5.3-1) ... 224s Selecting previously unselected package r-cran-withr. 224s Preparing to unpack .../104-r-cran-withr_3.0.2+dfsg-1_all.deb ... 224s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 224s Selecting previously unselected package r-cran-commonmark. 224s Preparing to unpack .../105-r-cran-commonmark_1.9.2-2_arm64.deb ... 224s Unpacking r-cran-commonmark (1.9.2-2) ... 224s Selecting previously unselected package r-cran-cachem. 224s Preparing to unpack .../106-r-cran-cachem_1.1.0-1_arm64.deb ... 224s Unpacking r-cran-cachem (1.1.0-1) ... 224s Selecting previously unselected package r-cran-jquerylib. 224s Preparing to unpack .../107-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 224s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 224s Selecting previously unselected package r-cran-memoise. 224s Preparing to unpack .../108-r-cran-memoise_2.0.1-1_all.deb ... 224s Unpacking r-cran-memoise (2.0.1-1) ... 224s Selecting previously unselected package r-cran-fs. 224s Preparing to unpack .../109-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 224s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 224s Selecting previously unselected package r-cran-rappdirs. 224s Preparing to unpack .../110-r-cran-rappdirs_0.3.3-1_arm64.deb ... 224s Unpacking r-cran-rappdirs (0.3.3-1) ... 224s Selecting previously unselected package r-cran-sass. 224s Preparing to unpack .../111-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 224s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 224s Selecting previously unselected package r-cran-bslib. 224s Preparing to unpack .../112-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 224s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 224s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 224s Preparing to unpack .../113-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 224s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 224s Selecting previously unselected package r-cran-shiny. 224s Preparing to unpack .../114-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 224s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 224s Selecting previously unselected package r-cran-gtable. 224s Preparing to unpack .../115-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 224s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 224s Selecting previously unselected package r-cran-isoband. 224s Preparing to unpack .../116-r-cran-isoband_0.2.7-1_arm64.deb ... 224s Unpacking r-cran-isoband (0.2.7-1) ... 224s Selecting previously unselected package r-cran-mgcv. 224s Preparing to unpack .../117-r-cran-mgcv_1.9-1-1_arm64.deb ... 224s Unpacking r-cran-mgcv (1.9-1-1) ... 224s Selecting previously unselected package r-cran-farver. 224s Preparing to unpack .../118-r-cran-farver_2.1.2-1_arm64.deb ... 224s Unpacking r-cran-farver (2.1.2-1) ... 224s Selecting previously unselected package r-cran-labeling. 225s Preparing to unpack .../119-r-cran-labeling_0.4.3-1_all.deb ... 225s Unpacking r-cran-labeling (0.4.3-1) ... 225s Selecting previously unselected package r-cran-colorspace. 225s Preparing to unpack .../120-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 225s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 225s Selecting previously unselected package r-cran-munsell. 225s Preparing to unpack .../121-r-cran-munsell_0.5.1-1_all.deb ... 225s Unpacking r-cran-munsell (0.5.1-1) ... 225s Selecting previously unselected package r-cran-rcolorbrewer. 225s Preparing to unpack .../122-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 225s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 225s Selecting previously unselected package r-cran-viridislite. 225s Preparing to unpack .../123-r-cran-viridislite_0.4.2-2_all.deb ... 225s Unpacking r-cran-viridislite (0.4.2-2) ... 225s Selecting previously unselected package r-cran-scales. 225s Preparing to unpack .../124-r-cran-scales_1.3.0-1_all.deb ... 225s Unpacking r-cran-scales (1.3.0-1) ... 225s Selecting previously unselected package r-cran-fansi. 225s Preparing to unpack .../125-r-cran-fansi_1.0.5-1_arm64.deb ... 225s Unpacking r-cran-fansi (1.0.5-1) ... 225s Selecting previously unselected package r-cran-utf8. 225s Preparing to unpack .../126-r-cran-utf8_1.2.4-1_arm64.deb ... 225s Unpacking r-cran-utf8 (1.2.4-1) ... 225s Selecting previously unselected package r-cran-pillar. 225s Preparing to unpack .../127-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 225s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 225s Selecting previously unselected package r-cran-tibble. 225s Preparing to unpack .../128-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 225s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 225s Selecting previously unselected package r-cran-ggplot2. 225s Preparing to unpack .../129-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 225s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 225s Selecting previously unselected package r-cran-segmented. 225s Preparing to unpack .../130-r-cran-segmented_2.1-4-1_all.deb ... 225s Unpacking r-cran-segmented (2.1-4-1) ... 225s Selecting previously unselected package r-cran-seqinr. 225s Preparing to unpack .../131-r-cran-seqinr_4.2-36-1_arm64.deb ... 225s Unpacking r-cran-seqinr (4.2-36-1) ... 225s Selecting previously unselected package r-cran-boot. 225s Preparing to unpack .../132-r-cran-boot_1.3-31-1_all.deb ... 225s Unpacking r-cran-boot (1.3-31-1) ... 225s Selecting previously unselected package r-cran-plyr. 225s Preparing to unpack .../133-r-cran-plyr_1.8.9-1_arm64.deb ... 225s Unpacking r-cran-plyr (1.8.9-1) ... 225s Selecting previously unselected package r-cran-stringi. 225s Preparing to unpack .../134-r-cran-stringi_1.8.4-1build1_arm64.deb ... 225s Unpacking r-cran-stringi (1.8.4-1build1) ... 225s Selecting previously unselected package r-cran-stringr. 226s Preparing to unpack .../135-r-cran-stringr_1.5.1-1_all.deb ... 226s Unpacking r-cran-stringr (1.5.1-1) ... 226s Selecting previously unselected package r-cran-reshape2. 226s Preparing to unpack .../136-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 226s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 226s Selecting previously unselected package r-cran-generics. 226s Preparing to unpack .../137-r-cran-generics_0.1.3-1_all.deb ... 226s Unpacking r-cran-generics (0.1.3-1) ... 226s Selecting previously unselected package r-cran-tidyselect. 226s Preparing to unpack .../138-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 226s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 226s Selecting previously unselected package r-cran-dplyr. 226s Preparing to unpack .../139-r-cran-dplyr_1.1.4-4_arm64.deb ... 226s Unpacking r-cran-dplyr (1.1.4-4) ... 226s Selecting previously unselected package r-cran-permute. 226s Preparing to unpack .../140-r-cran-permute_0.9-7-1_all.deb ... 226s Unpacking r-cran-permute (0.9-7-1) ... 226s Selecting previously unselected package r-cran-cluster. 226s Preparing to unpack .../141-r-cran-cluster_2.1.8-1_arm64.deb ... 226s Unpacking r-cran-cluster (2.1.8-1) ... 226s Selecting previously unselected package r-cran-vegan. 226s Preparing to unpack .../142-r-cran-vegan_2.6-10+dfsg-1ubuntu2_arm64.deb ... 226s Unpacking r-cran-vegan (2.6-10+dfsg-1ubuntu2) ... 226s Selecting previously unselected package r-cran-adegenet. 226s Preparing to unpack .../143-r-cran-adegenet_2.1.11-1_arm64.deb ... 226s Unpacking r-cran-adegenet (2.1.11-1) ... 226s Selecting previously unselected package r-cran-hms. 226s Preparing to unpack .../144-r-cran-hms_1.1.3-1_all.deb ... 226s Unpacking r-cran-hms (1.1.3-1) ... 226s Selecting previously unselected package r-cran-prettyunits. 226s Preparing to unpack .../145-r-cran-prettyunits_1.2.0-1_all.deb ... 226s Unpacking r-cran-prettyunits (1.2.0-1) ... 226s Selecting previously unselected package r-cran-progress. 226s Preparing to unpack .../146-r-cran-progress_1.2.3-1_all.deb ... 226s Unpacking r-cran-progress (1.2.3-1) ... 226s Selecting previously unselected package r-cran-rncl. 226s Preparing to unpack .../147-r-cran-rncl_0.8.7-1_arm64.deb ... 226s Unpacking r-cran-rncl (0.8.7-1) ... 226s Selecting previously unselected package r-cran-xml. 226s Preparing to unpack .../148-r-cran-xml_3.99-0.18-1_arm64.deb ... 226s Unpacking r-cran-xml (3.99-0.18-1) ... 226s Selecting previously unselected package r-cran-curl. 226s Preparing to unpack .../149-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 226s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 226s Selecting previously unselected package r-cran-sys. 226s Preparing to unpack .../150-r-cran-sys_3.4.3-1_arm64.deb ... 226s Unpacking r-cran-sys (3.4.3-1) ... 226s Selecting previously unselected package r-cran-askpass. 226s Preparing to unpack .../151-r-cran-askpass_1.2.1-1_arm64.deb ... 226s Unpacking r-cran-askpass (1.2.1-1) ... 227s Selecting previously unselected package r-cran-openssl. 227s Preparing to unpack .../152-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 227s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 227s Selecting previously unselected package r-cran-httr. 227s Preparing to unpack .../153-r-cran-httr_1.4.7+dfsg-1_all.deb ... 227s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 227s Selecting previously unselected package r-cran-uuid. 227s Preparing to unpack .../154-r-cran-uuid_1.2-1-1_arm64.deb ... 227s Unpacking r-cran-uuid (1.2-1-1) ... 227s Selecting previously unselected package r-cran-purrr. 227s Preparing to unpack .../155-r-cran-purrr_1.0.4-1_arm64.deb ... 227s Unpacking r-cran-purrr (1.0.4-1) ... 227s Selecting previously unselected package r-cran-tidyr. 227s Preparing to unpack .../156-r-cran-tidyr_1.3.1-1_arm64.deb ... 227s Unpacking r-cran-tidyr (1.3.1-1) ... 227s Selecting previously unselected package r-cran-xml2. 227s Preparing to unpack .../157-r-cran-xml2_1.3.7-1_arm64.deb ... 227s Unpacking r-cran-xml2 (1.3.7-1) ... 227s Selecting previously unselected package r-cran-rnexml. 227s Preparing to unpack .../158-r-cran-rnexml_2.4.11+ds-1_all.deb ... 227s Unpacking r-cran-rnexml (2.4.11+ds-1) ... 227s Selecting previously unselected package r-cran-phylobase. 227s Preparing to unpack .../159-r-cran-phylobase_0.8.12-1_arm64.deb ... 227s Unpacking r-cran-phylobase (0.8.12-1) ... 227s Selecting previously unselected package r-cran-adephylo. 227s Preparing to unpack .../160-r-cran-adephylo_1.1-16-1_arm64.deb ... 227s Unpacking r-cran-adephylo (1.1-16-1) ... 227s Selecting previously unselected package r-cran-brio. 227s Preparing to unpack .../161-r-cran-brio_1.1.5-1_arm64.deb ... 227s Unpacking r-cran-brio (1.1.5-1) ... 227s Selecting previously unselected package r-cran-ps. 227s Preparing to unpack .../162-r-cran-ps_1.9.0-1_arm64.deb ... 227s Unpacking r-cran-ps (1.9.0-1) ... 227s Selecting previously unselected package r-cran-processx. 227s Preparing to unpack .../163-r-cran-processx_3.8.6-1_arm64.deb ... 227s Unpacking r-cran-processx (3.8.6-1) ... 227s Selecting previously unselected package r-cran-callr. 227s Preparing to unpack .../164-r-cran-callr_3.7.6-1_all.deb ... 227s Unpacking r-cran-callr (3.7.6-1) ... 227s Selecting previously unselected package r-cran-desc. 227s Preparing to unpack .../165-r-cran-desc_1.4.3-1_all.deb ... 227s Unpacking r-cran-desc (1.4.3-1) ... 227s Selecting previously unselected package r-cran-diffobj. 227s Preparing to unpack .../166-r-cran-diffobj_0.3.5-1_arm64.deb ... 227s Unpacking r-cran-diffobj (0.3.5-1) ... 227s Selecting previously unselected package r-cran-evaluate. 227s Preparing to unpack .../167-r-cran-evaluate_1.0.3-1_all.deb ... 227s Unpacking r-cran-evaluate (1.0.3-1) ... 227s Selecting previously unselected package r-cran-pkgbuild. 228s Preparing to unpack .../168-r-cran-pkgbuild_1.4.6-1_all.deb ... 228s Unpacking r-cran-pkgbuild (1.4.6-1) ... 228s Selecting previously unselected package r-cran-rprojroot. 228s Preparing to unpack .../169-r-cran-rprojroot_2.0.4-2_all.deb ... 228s Unpacking r-cran-rprojroot (2.0.4-2) ... 228s Selecting previously unselected package r-cran-pkgload. 228s Preparing to unpack .../170-r-cran-pkgload_1.4.0-1_all.deb ... 228s Unpacking r-cran-pkgload (1.4.0-1) ... 228s Selecting previously unselected package r-cran-praise. 228s Preparing to unpack .../171-r-cran-praise_1.0.0-4build1_all.deb ... 228s Unpacking r-cran-praise (1.0.0-4build1) ... 228s Selecting previously unselected package r-cran-waldo. 228s Preparing to unpack .../172-r-cran-waldo_0.6.1-2_all.deb ... 228s Unpacking r-cran-waldo (0.6.1-2) ... 228s Selecting previously unselected package r-cran-testthat. 228s Preparing to unpack .../173-r-cran-testthat_3.2.3-1_arm64.deb ... 228s Unpacking r-cran-testthat (3.2.3-1) ... 228s Setting up libjs-json (0~20221030+~1.0.8-1) ... 228s Setting up javascript-common (12) ... 228s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 228s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 228s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 228s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 228s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 228s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 228s Setting up libjs-popper.js (1.16.1+ds-6) ... 228s Setting up libxcb-render0:arm64 (1.17.0-2) ... 228s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 228s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 228s Setting up unzip (6.0-28ubuntu6) ... 228s Setting up x11-common (1:7.7+23ubuntu3) ... 228s Setting up node-html5shiv (3.7.3+dfsg-5) ... 228s Setting up libdeflate0:arm64 (1.23-1) ... 228s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 228s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 228s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 228s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 228s Setting up libjs-es5-shim (4.6.7-2) ... 228s Setting up zip (3.0-14ubuntu2) ... 228s Setting up libblas3:arm64 (3.12.1-2) ... 228s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 228s Setting up libjs-d3 (3.5.17-4) ... 228s Setting up fonts-dejavu-mono (2.37-8) ... 228s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 228s Setting up fonts-dejavu-core (2.37-8) ... 229s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 229s Setting up libltdl7:arm64 (2.5.4-4) ... 229s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 229s Setting up libwebp7:arm64 (1.5.0-0.1) ... 229s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 229s Setting up libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 229s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 229s Setting up libthai-data (0.1.29-2build1) ... 229s Setting up node-bootstrap-sass (3.4.3-2) ... 229s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 229s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 229s Setting up libpaper2:arm64 (2.2.5-0.3) ... 229s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 229s Setting up node-normalize.css (8.0.1-5) ... 229s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 229s Setting up xdg-utils (1.2.1-2ubuntu1) ... 229s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 229s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 229s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 229s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 229s Setting up libice6:arm64 (2:1.1.1-1) ... 229s Setting up liblapack3:arm64 (3.12.1-2) ... 229s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 229s Setting up libamd3:arm64 (1:7.8.3+dfsg-3) ... 229s Setting up libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 229s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 229s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 229s Setting up libpaper-utils (2.2.5-0.3) ... 229s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 229s Setting up libthai0:arm64 (0.1.29-2build1) ... 229s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 229s Setting up libglpk40:arm64 (5.0-1build2) ... 229s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 229s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 229s Setting up libsm6:arm64 (2:1.2.4-1) ... 229s Setting up fontconfig (2.15.0-2ubuntu1) ... 231s Regenerating fonts cache... done. 231s Setting up libxft2:arm64 (2.3.6-1build1) ... 231s Setting up libtk8.6:arm64 (8.6.16-1) ... 231s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 231s Setting up libcairo2:arm64 (1.18.2-2) ... 231s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 231s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 231s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 231s Setting up r-base-core (4.4.3-1) ... 232s Creating config file /etc/R/Renviron with new version 232s Setting up r-cran-crayon (1.5.3-1) ... 232s Setting up r-cran-labeling (0.4.3-1) ... 232s Setting up r-cran-sourcetools (0.1.7-1-1) ... 232s Setting up r-cran-lattice (0.22-6-1) ... 232s Setting up r-cran-ps (1.9.0-1) ... 232s Setting up r-cran-nlme (3.1.167-1) ... 232s Setting up r-cran-farver (2.1.2-1) ... 232s Setting up r-cran-xml (3.99-0.18-1) ... 232s Setting up r-cran-viridislite (0.4.2-2) ... 232s Setting up r-cran-pixmap (0.4-13-1) ... 232s Setting up r-cran-cluster (2.1.8-1) ... 232s Setting up r-cran-commonmark (1.9.2-2) ... 232s Setting up r-cran-r6 (2.6.1-1) ... 232s Setting up r-cran-pkgkitten (0.2.4-1) ... 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publications. 236s 236s Type 'demo()' for some demos, 'help()' for on-line help, or 236s 'help.start()' for an HTML browser interface to help. 236s Type 'q()' to quit R. 236s 236s > Stangle("adephylo.Rnw") 236s Writing to file adephylo.R 236s > source("adephylo.R", echo=TRUE) 236s 236s > library(ape) 236s 236s > library(phylobase) 238s 238s Attaching package: ‘phylobase’ 238s 238s The following object is masked from ‘package:ape’: 238s 238s edges 238s 238s 238s > library(ade4) 238s 238s > library(adephylo) 239s 239s > search() 239s [1] ".GlobalEnv" "package:adephylo" "package:ade4" 239s [4] "package:phylobase" "package:ape" "package:stats" 239s [7] "package:graphics" "package:grDevices" "package:utils" 239s [10] "package:datasets" "package:methods" "Autoloads" 239s [13] "package:base" 239s 239s > data(ungulates) 239s 239s > ungulates$tre 239s [1] "((Antilocapra_americana,((Gorgon_taurinus,Oryx_leucoryx)W1,(Taurotragus_livingstoni,Tautragus_oryx)W2,(Gazella_thompsoni,(Saiga_tatarica,(Ovis_canadensis,Ovis_aries)W3)W6)W7)W10)W11,((Rangifer_tarandus,Alces_alces,Capreolus_capreolus,(Odocoileus_virginianus,Odocoileus_hemionus)W4)W8,(Dama_dama,Axis_axis,(Cervus_canadensis,Cervus_scoticus)W5)W9)W12)Root;" 239s 239s > myTree <- read.tree(text = ungulates$tre) 239s 239s > myTree 239s 239s Phylogenetic tree with 18 tips and 13 internal nodes. 239s 239s Tip labels: 239s Antilocapra_americana, Gorgon_taurinus, Oryx_leucoryx, Taurotragus_livingstoni, Tautragus_oryx, Gazella_thompsoni, ... 239s Node labels: 239s Root, W11, W10, W1, W2, W7, ... 239s 239s Rooted; no branch length. 239s 239s > plot(myTree, main = "ape's plotting of a tree") 239s 239s > temp <- as(myTree, "phylo4") 239s 239s > class(temp) 239s [1] "phylo4" 239s attr(,"package") 239s [1] "phylobase" 239s 239s > temp <- as(temp, "phylo") 239s 239s > class(temp) 239s [1] "phylo" 239s 239s > all.equal(temp, myTree) 239s [1] TRUE 239s 239s > ung <- phylo4d(myTree, ungulates$tab) 239s 239s > class(ung) 239s [1] "phylo4d" 239s attr(,"package") 239s [1] "phylobase" 239s 239s > table.phylo4d(ung) 239s 239s > x <- tdata(ung, type = "tip") 239s 239s > head(x) 239s afbw mnw fnw ls 239s Antilocapra_americana 50586 3832 3908 1.8 239s Gorgon_taurinus 165000 18600 14500 1.0 239s Oryx_leucoryx 87700 6840 6490 1.0 239s Taurotragus_livingstoni 405000 36300 28500 1.0 239s Tautragus_oryx 316000 26800 24700 1.0 239s Gazella_thompsoni 21300 2500 2500 1.0 239s 239s > W <- proxTips(myTree, met = "Abouheif") 239s 239s > moran.idx(tdata(ung, type = "tip")$afbw, W) 239s [1] 0.1132682 239s 239s > moran.idx(tdata(ung, type = "tip")[, 1], W, addInfo = TRUE) 239s [1] 0.1132682 239s attr(,"I0") 239s [1] -0.05882353 239s attr(,"Imin") 239s [1] -0.5217391 239s attr(,"Imax") 239s [1] 1.000699 239s 239s > afbw <- tdata(ung, type = "tip")$afbw 239s 239s > sim <- replicate(499, moran.idx(sample(afbw), W)) 240s 240s > sim <- c(moran.idx(afbw, W), sim) 240s 240s > cat("\n=== p-value (right-tail) === \n") 240s 240s === p-value (right-tail) === 240s 240s > pval <- mean(sim >= sim[1]) 240s 240s > pval 240s [1] 0.136 240s 240s > plot(density(sim), main = "Moran's I Monte Carlo test for 'bif'") 240s 240s > mtext("Density of permutations, and observation (in red)") 240s 240s > abline(v = sim[1], col = "red", lwd = 3) 240s 240s > ung.abTests <- abouheif.moran(ung) 240s 240s > ung.abTests 240s class: krandtest lightkrandtest 240s Monte-Carlo tests 240s Call: as.krandtest(sim = matrix(res$result, ncol = nvar, byrow = TRUE), 240s obs = res$obs, alter = alter, names = test.names) 240s 240s Number of tests: 4 240s 240s Adjustment method for multiple comparisons: none 240s Permutation number: 999 240s Test Obs Std.Obs Alter Pvalue 240s 1 afbw 0.1653920 1.211995 greater 0.134 240s 2 mnw 0.3681410 2.815699 greater 0.012 240s 3 fnw 0.3843272 2.874975 greater 0.011 240s 4 ls 0.3002425 1.979213 greater 0.041 240s 240s 240s > plot(ung.abTests) 240s 240s > hasEdgeLength(ung) 240s [1] FALSE 240s 240s > myTree.withBrLe <- compute.brlen(myTree) 240s 240s > myProx <- vcv.phylo(myTree.withBrLe) 240s 240s > abouheif.moran(ung, W = myProx) 240s class: krandtest lightkrandtest 240s Monte-Carlo tests 240s Call: as.krandtest(sim = matrix(res$result, ncol = nvar, byrow = TRUE), 240s obs = res$obs, alter = alter, names = test.names) 240s 240s Number of tests: 4 240s 240s Adjustment method for multiple comparisons: none 240s Permutation number: 999 240s Test Obs Std.Obs Alter Pvalue 240s 1 afbw 0.09113999 -0.2911007 greater 0.470 240s 2 mnw 0.17453316 0.9159133 greater 0.167 240s 3 fnw 0.16952884 0.8123856 greater 0.177 240s 4 ls 0.15842344 0.6352500 greater 0.150 240s 240s 240s > x <- as(rtree(5), "phylo4") 240s 240s > plot(x, show.n = TRUE) 240s 240s > x.part <- treePart(x) 240s 240s > x.part 240s X7 X8 X9 240s t1 1 0 0 240s t3 1 1 0 240s t5 1 1 0 240s t4 0 0 1 240s t2 0 0 1 240s 240s > temp <- phylo4d(x, x.part) 240s 240s > table.phylo4d(temp, cent = FALSE, scale = FALSE) 240s 240s > args(treePart) 240s function (x, result = c("dummy", "orthobasis")) 240s NULL 240s 240s > temp <- phylo4d(x, treePart(x, result = "orthobasis")) 240s 240s > temp <- phylo4d(myTree, treePart(myTree, result = "orthobasis")) 240s 240s > par(mar = rep(0.1, 4)) 240s 240s > table.phylo4d(temp, repVar = 1:8, ratio.tree = 0.3) 240s 240s > afbw.ortgTest <- orthogram(afbw, myTree) 240s 240s > afbw.ortgTest 240s class: krandtest lightkrandtest 240s Monte-Carlo tests 240s Call: orthogram(x = afbw, tre = myTree) 240s 240s Number of tests: 4 240s 240s Adjustment method for multiple comparisons: none 240s Permutation number: 999 240s Test Obs Std.Obs Alter Pvalue 240s 1 R2Max 0.3298815 0.8919056 greater 0.162 240s 2 SkR2k 8.2600870 -0.4878640 greater 0.698 240s 3 Dmax 0.2066299 0.3150202 greater 0.340 240s 4 SCE 0.1797097 -0.5878222 greater 0.678 240s 240s 240s > me.phylo(myTree.withBrLe) 240s Orthobasis with 18 rows and 17 columns 240s Only 6 rows and 4 columns are shown 240s ME 1 ME 2 ME 3 ME 4 240s Antilocapra_americana -0.4437356 0.0007632929 -0.1441052 2.760748e-16 240s Gorgon_taurinus -0.9373732 0.0123304634 -1.5429045 2.121320e+00 240s Oryx_leucoryx -0.9373732 0.0123304634 -1.5429045 2.121320e+00 240s Taurotragus_livingstoni -0.9373732 0.0123304634 -1.5429045 -2.121320e+00 240s Tautragus_oryx -0.9373732 0.0123304634 -1.5429045 -2.121320e+00 240s Gazella_thompsoni -0.8932566 -0.0455675921 0.7757824 1.113444e-15 240s 240s > ung.listBas <- list() 240s 240s > ung.listBas[[1]] <- phylo4d(myTree, as.data.frame(me.phylo(myTree.withBrLe, 240s + method = "patristic"))) 240s 240s > ung.listBas[[2]] <- phylo4d(myTree, as.data.frame(me.phylo(myTree, 240s + method = "nNodes"))) 240s 240s > ung.listBas[[3]] <- phylo4d(myTree, as.data.frame(me.phylo(myTree, 240s + method = "Abouheif"))) 240s 240s > ung.listBas[[4]] <- phylo4d(myTree, as.data.frame(me.phylo(myTree, 240s + method = "sumDD"))) 240s 240s > par(mar = rep(0.1, 4), mfrow = c(2, 2)) 240s 240s > invisible(lapply(ung.listBas, table.phylo4d, repVar = 1:5, 240s + cex.sym = 0.7, show.tip.label = FALSE, show.node = FALSE)) 240s 240s > afbw <- log(ungulates$tab[, 1]) 240s 240s > neonatw <- log((ungulates$tab[, 2] + ungulates$tab[, 240s + 3])/2) 240s 240s > names(afbw) <- myTree$tip.label 240s 240s > names(neonatw) <- myTree$tip.label 240s 240s > plot(afbw, neonatw, main = "Relationship between afbw and neonatw") 240s 240s > lm1 <- lm(neonatw ~ afbw) 240s 240s > abline(lm1, col = "blue") 240s 240s > anova(lm1) 240s Analysis of Variance Table 240s 240s Response: neonatw 240s Df Sum Sq Mean Sq F value Pr(>F) 240s afbw 1 12.1625 12.1625 159.43 9.81e-10 *** 240s Residuals 16 1.2206 0.0763 240s --- 240s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 240s 240s > resid <- residuals(lm1) 240s 240s > names(resid) <- myTree$tip.label 240s 240s > temp <- phylo4d(myTree, data.frame(resid)) 240s 240s > abouheif.moran(temp) 240s class: krandtest lightkrandtest 240s Monte-Carlo tests 240s Call: as.krandtest(sim = matrix(res$result, ncol = nvar, byrow = TRUE), 240s obs = res$obs, alter = alter, names = test.names) 240s 240s Number of tests: 1 240s 240s Adjustment method for multiple comparisons: none 240s Permutation number: 999 240s Test Obs Std.Obs Alter Pvalue 240s 1 resid 0.4566173 3.137874 greater 0.004 240s 240s 240s > table.phylo4d(temp) 240s 240s > myBasis <- me.phylo(myTree, method = "Abouheif") 240s 240s > lm2 <- lm(neonatw ~ myBasis[, 1] + afbw) 240s 240s > resid <- residuals(lm2) 240s 240s > names(resid) <- myTree$tip.label 240s 240s > temp <- phylo4d(myTree, data.frame(resid)) 240s 240s > abouheif.moran(temp) 240s class: krandtest lightkrandtest 240s Monte-Carlo tests 240s Call: as.krandtest(sim = matrix(res$result, ncol = nvar, byrow = TRUE), 240s obs = res$obs, alter = alter, names = test.names) 240s 240s Number of tests: 1 240s 240s Adjustment method for multiple comparisons: none 240s Permutation number: 999 240s Test Obs Std.Obs Alter Pvalue 240s 1 resid 0.1805854 1.207359 greater 0.121 240s 240s 240s > anova(lm2) 240s Analysis of Variance Table 240s 240s Response: neonatw 240s Df Sum Sq Mean Sq F value Pr(>F) 240s myBasis[, 1] 1 0.1630 0.1630 3.1444 0.09649 . 240s afbw 1 12.4427 12.4427 240.0840 1.227e-10 *** 240s Residuals 15 0.7774 0.0518 240s --- 240s Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1 240s 240s > W <- proxTips(myTree, method = "Abouheif", sym = FALSE) 240s 240s > lagNeonatw <- W %*% neonatw 240s 240s > lm3 <- lm(neonatw ~ lagNeonatw + afbw) 240s 240s > resid <- residuals(lm3) 240s 240s > abouheif.moran(resid, W) 240s class: krandtest lightkrandtest 240s Monte-Carlo tests 240s Call: as.krandtest(sim = matrix(res$result, ncol = nvar, byrow = TRUE), 240s obs = res$obs, alter = alter, names = test.names) 240s 240s Number of tests: 1 240s 240s Adjustment method for multiple comparisons: none 240s Permutation number: 999 240s Test Obs Std.Obs Alter Pvalue 240s 1 x 0.1658522 1.476544 greater 0.087 240s 240s 240s > f1 <- function(x) { 240s + m <- mean(x, na.rm = TRUE) 240s + x[is.na(x)] <- m 240s + return(x) 240s + } 240s 240s > data(maples) 240s 240s > traits <- apply(maples$tab, 2, f1) 240s 240s > pca1 <- dudi.pca(traits, scannf = FALSE, nf = 1) 240s 240s > barplot(pca1$eig, main = "PCA eigenvalues", col = heat.colors(16)) 240s 240s > tre <- read.tree(text = maples$tre) 240s 240s > W <- proxTips(tre) 240s 240s > myComp <- data.frame(PC1 = pca1$li[, 1], lagPC1 = W %*% 240s + pca1$li[, 1]) 240s 240s > myComp.4d <- phylo4d(tre, myComp) 240s 240s > nodeLabels(myComp.4d) <- names(nodeLabels(myComp.4d)) 240s 240s > table.phylo4d(myComp.4d) 240s 240s > myTest <- abouheif.moran(myComp[, 1], W = W) 240s 240s > plot(myTest, main = "Abouheif's test using patristic proximity") 240s 240s > mtext("First principal component - maples data", col = "blue", 240s + line = 1) 240s 240s > ldgs <- pca1$c1[, 1] 240s 240s > plot(ldgs, type = "h", xlab = "Variable", xaxt = "n", 240s + ylab = "Loadings") 240s 240s > s.label(cbind(1:31, ldgs), lab = colnames(traits), 240s + add.p = TRUE, clab = 0.8) 240s 240s > temp <- abs(ldgs) 240s 240s > thres <- quantile(temp, 0.75) 240s 240s > abline(h = thres * c(-1, 1), lty = 2, col = "blue3", 240s + lwd = 3) 240s 240s > title("Loadings for PC1") 240s 240s > mtext("Quarter of most contributing variables indicated in blue", 240s + col = "blue") 240s > 240s adephylo.Rnw passed 240s autopkgtest [15:20:37]: test run-unit-test: -----------------------] 241s autopkgtest [15:20:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 241s run-unit-test PASS 241s autopkgtest [15:20:38]: test pkg-r-autopkgtest: preparing testbed 391s autopkgtest [15:23:08]: testbed dpkg architecture: arm64 391s autopkgtest [15:23:08]: testbed apt version: 2.9.33 392s autopkgtest [15:23:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 392s 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plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 398s Fetched 608 kB in 1s (1010 kB/s) 398s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 398s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 398s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 399s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 399s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 399s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 399s Setting up strace (6.13+ds-1ubuntu1) ... 399s Processing triggers for man-db (2.13.0-1) ... 400s Reading package lists... 400s Building dependency tree... 400s Reading state information... 400s Solving dependencies... 401s The following packages will be REMOVED: 401s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 401s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 401s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 401s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 401s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 401s After this operation, 267 MB disk space will be freed. 401s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 401s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 401s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 401s Removing libpython3.12t64:arm64 (3.12.9-1) ... 401s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 401s Removing libnsl2:arm64 (1.3.0-3build3) ... 401s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 401s Removing libunwind8:arm64 (1.6.2-3.1) ... 401s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 402s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 403s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 403s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 403s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 403s /etc/kernel/postrm.d/initramfs-tools: 403s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 403s /etc/kernel/postrm.d/zz-flash-kernel: 403s flash-kernel: Kernel 6.11.0-8-generic has been removed. 404s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 404s /etc/kernel/postrm.d/zz-update-grub: 404s Sourcing file `/etc/default/grub' 404s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 404s Generating grub configuration file ... 404s Found linux image: /boot/vmlinuz-6.14.0-10-generic 404s Found initrd image: /boot/initrd.img-6.14.0-10-generic 404s Warning: os-prober will not be executed to detect other bootable partitions. 404s Systems on them will not be added to the GRUB boot configuration. 404s Check GRUB_DISABLE_OS_PROBER documentation entry. 404s Adding boot menu entry for UEFI Firmware Settings ... 404s done 404s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 405s Processing triggers for libc-bin (2.41-1ubuntu1) ... 405s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 405s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 405s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 405s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 405s autopkgtest [15:23:22]: upgrading testbed (apt dist-upgrade and autopurge) 405s Reading package lists... 406s Building dependency tree... 406s Reading state information... 406s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 406s Starting 2 pkgProblemResolver with broken count: 0 406s Done 407s Entering ResolveByKeep 407s 407s Calculating upgrade... 408s The following packages will be upgraded: 408s libc-bin libc-dev-bin libc6 libc6-dev locales 408s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 408s Need to get 9530 kB of archives. 408s After this operation, 0 B of additional disk space will be used. 408s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 408s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 408s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 409s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 409s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 410s Preconfiguring packages ... 410s Fetched 9530 kB in 2s (5430 kB/s) 410s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 410s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 410s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 410s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 410s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 410s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 410s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 411s Setting up libc6:arm64 (2.41-1ubuntu2) ... 411s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 411s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 411s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 411s Setting up libc-bin (2.41-1ubuntu2) ... 411s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 411s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 411s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 411s Setting up locales (2.41-1ubuntu2) ... 412s Generating locales (this might take a while)... 414s en_US.UTF-8... done 414s Generation complete. 414s Setting up libc-dev-bin (2.41-1ubuntu2) ... 414s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 414s Processing triggers for man-db (2.13.0-1) ... 415s Processing triggers for systemd (257.3-1ubuntu3) ... 416s Reading package lists... 416s Building dependency tree... 416s Reading state information... 416s Starting pkgProblemResolver with broken count: 0 416s Starting 2 pkgProblemResolver with broken count: 0 416s Done 417s Solving dependencies... 417s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 417s autopkgtest [15:23:34]: rebooting testbed after setup commands that affected boot 445s Reading package lists... 445s Building dependency tree... 445s Reading state information... 445s Starting pkgProblemResolver with broken count: 0 445s Starting 2 pkgProblemResolver with broken count: 0 445s Done 446s The following NEW packages will be installed: 446s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 446s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 446s fonts-font-awesome fonts-glyphicons-halflings g++ g++-14 446s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 446s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 446s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 446s javascript-common libamd3 libasan8 libblas-dev libblas3 libbz2-dev libcairo2 446s libcc1-0 libcolamd3 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 446s libgcc-14-dev libgfortran-14-dev libgfortran5 libglpk40 libgomp1 446s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 446s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 446s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 446s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 446s libjs-jquery-ui libjs-json libjs-microplugin.js libjs-popper.js 446s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 446s liblerc4 liblsan0 libltdl7 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 446s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 446s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 446s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 446s libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 446s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 446s libxrender1 libxss1 libxt6t64 littler node-bootstrap-sass node-html5shiv 446s node-normalize.css pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 446s r-base-dev r-cran-ade4 r-cran-adegenet r-cran-adephylo r-cran-ape 446s r-cran-askpass r-cran-base64enc r-cran-boot r-cran-bslib r-cran-cachem 446s r-cran-cli r-cran-cluster r-cran-colorspace r-cran-commonmark r-cran-cpp11 446s r-cran-crayon r-cran-curl r-cran-digest r-cran-dplyr r-cran-fansi 446s r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics 446s r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-hms r-cran-htmltools 446s r-cran-httpuv r-cran-httr r-cran-igraph r-cran-isoband r-cran-jquerylib 446s r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle 446s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise 446s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 446s r-cran-permute r-cran-phylobase r-cran-pillar r-cran-pixmap r-cran-pkgconfig 446s r-cran-pkgkitten r-cran-plyr r-cran-prettyunits r-cran-progress 446s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 446s r-cran-rcpp r-cran-rcpparmadillo r-cran-reshape2 r-cran-rlang r-cran-rncl 446s r-cran-rnexml r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr 446s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr 446s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 446s r-cran-uuid r-cran-vctrs r-cran-vegan r-cran-viridislite r-cran-withr 446s r-cran-xml r-cran-xml2 r-cran-xtable unzip x11-common xdg-utils zip 446s zlib1g-dev 447s 0 upgraded, 215 newly installed, 0 to remove and 0 not upgraded. 447s Need to get 220 MB of archives. 447s After this operation, 589 MB of additional disk space will be used. 447s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 447s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 447s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 451s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 451s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 451s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 451s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 451s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 451s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 451s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 452s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 452s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 453s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 453s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 453s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 454s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 461s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 461s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 461s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 461s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 462s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 467s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 467s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 467s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 467s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 467s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 467s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 468s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 468s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 468s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 468s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 468s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 468s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 468s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 468s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 469s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 473s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 473s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 473s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 473s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 473s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 473s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [13.2 kB] 473s Get:43 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-3 [26.1 kB] 473s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 473s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 473s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 473s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 473s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 473s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 473s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 473s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 473s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [18.3 kB] 473s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 473s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 473s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 473s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 473s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB] 473s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 473s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 474s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 474s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 474s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 479s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 479s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 479s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 479s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 479s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 479s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 479s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 479s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 479s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 479s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 479s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 479s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 479s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 479s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 479s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 479s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 479s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 480s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 480s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 481s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 482s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 482s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 483s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 483s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 483s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 483s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 483s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 483s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 483s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 483s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 483s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 483s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 483s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 483s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 483s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 484s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 484s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 484s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 484s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 484s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 485s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 485s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 486s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 486s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 486s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 486s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 487s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 487s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 487s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 487s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 487s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 515s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 516s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 516s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 516s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 516s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 516s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 516s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 516s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 516s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 516s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 516s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 516s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 517s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pixmap all 0.4-13-1 [213 kB] 517s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 519s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.2-0+dfsg-1 [1443 kB] 520s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 520s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 522s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.3-1-1 [843 kB] 522s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ade4 arm64 1.7-23-1 [5381 kB] 528s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 529s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 529s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 530s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 530s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 530s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 534s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 534s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 535s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 535s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB] 540s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 541s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 542s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ape arm64 5.8-1-1 [2901 kB] 544s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 544s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 544s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 544s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 545s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 545s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 545s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 545s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 546s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 546s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 547s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 548s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 548s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 548s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 548s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 549s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 549s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 549s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 549s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 549s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 549s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 550s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 554s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 554s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 557s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 558s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 559s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 562s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 563s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 564s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 565s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 566s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 566s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 567s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 568s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 568s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 568s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 569s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 569s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 573s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-segmented all 2.1-4-1 [1376 kB] 575s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-seqinr arm64 4.2-36-1 [4013 kB] 579s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-boot all 1.3-31-1 [635 kB] 580s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 581s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 582s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 582s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 583s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 583s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 583s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 585s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-permute all 0.9-7-1 [228 kB] 585s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB] 586s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vegan arm64 2.6-10+dfsg-1ubuntu2 [3136 kB] 589s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-adegenet arm64 2.1.11-1 [2724 kB] 592s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 592s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 592s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 592s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rncl arm64 0.8.7-1 [474 kB] 593s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 595s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 595s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 595s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 595s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 596s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 596s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-uuid arm64 1.2-1-1 [48.7 kB] 596s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 597s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 598s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml2 arm64 1.3.7-1 [327 kB] 598s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rnexml all 2.4.11+ds-1 [744 kB] 599s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-phylobase arm64 0.8.12-1 [686 kB] 599s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-adephylo arm64 1.1-16-1 [589 kB] 601s Preconfiguring packages ... 601s Fetched 220 MB in 2min 33s (1433 kB/s) 601s Selecting previously unselected package libisl23:arm64. 601s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 601s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 601s Unpacking libisl23:arm64 (0.27-1) ... 601s Selecting previously unselected package libmpc3:arm64. 601s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 601s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 601s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 601s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 601s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package cpp-14. 601s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 601s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package cpp-aarch64-linux-gnu. 601s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 601s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 601s Selecting previously unselected package cpp. 601s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 601s Unpacking cpp (4:14.2.0-1ubuntu1) ... 601s Selecting previously unselected package libcc1-0:arm64. 601s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 601s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 601s Selecting previously unselected package libgomp1:arm64. 601s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 601s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 601s Selecting previously unselected package libitm1:arm64. 601s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 601s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 601s Selecting previously unselected package libasan8:arm64. 601s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 601s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 601s Selecting previously unselected package liblsan0:arm64. 602s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 602s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 602s Selecting previously unselected package libtsan2:arm64. 602s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 602s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 602s Selecting previously unselected package libubsan1:arm64. 602s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 602s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 602s Selecting previously unselected package libhwasan0:arm64. 602s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 602s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 602s Selecting previously unselected package libgcc-14-dev:arm64. 602s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 602s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 602s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 602s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 602s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 602s Selecting previously unselected package gcc-14. 602s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 602s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 602s Selecting previously unselected package gcc-aarch64-linux-gnu. 602s Preparing to unpack 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604s Selecting previously unselected package libxcb-shm0:arm64. 604s Preparing to unpack .../048-libxcb-shm0_1.17.0-2_arm64.deb ... 604s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 604s Selecting previously unselected package libxrender1:arm64. 604s Preparing to unpack .../049-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 604s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 604s Selecting previously unselected package libcairo2:arm64. 604s Preparing to unpack .../050-libcairo2_1.18.2-2_arm64.deb ... 604s Unpacking libcairo2:arm64 (1.18.2-2) ... 604s Selecting previously unselected package libcolamd3:arm64. 604s Preparing to unpack .../051-libcolamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 604s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 605s Selecting previously unselected package libdatrie1:arm64. 605s Preparing to unpack .../052-libdatrie1_0.2.13-3build1_arm64.deb ... 605s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 605s Selecting previously unselected package libdeflate0:arm64. 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libharfbuzz0b:arm64 (10.2.0-1) ... 605s Selecting previously unselected package x11-common. 605s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ... 605s Unpacking x11-common (1:7.7+23ubuntu3) ... 605s Selecting previously unselected package libice6:arm64. 605s Preparing to unpack .../060-libice6_2%3a1.1.1-1_arm64.deb ... 605s Unpacking libice6:arm64 (2:1.1.1-1) ... 605s Selecting previously unselected package libicu-dev:arm64. 605s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_arm64.deb ... 605s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 605s Selecting previously unselected package libjpeg-turbo8:arm64. 605s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 605s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 605s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 605s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 605s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 605s 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previously unselected package libthai0:arm64. 607s Preparing to unpack .../085-libthai0_0.1.29-2build1_arm64.deb ... 607s Unpacking libthai0:arm64 (0.1.29-2build1) ... 607s Selecting previously unselected package libpango-1.0-0:arm64. 607s Preparing to unpack .../086-libpango-1.0-0_1.56.2-1_arm64.deb ... 607s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 607s Selecting previously unselected package libpangoft2-1.0-0:arm64. 607s Preparing to unpack .../087-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 607s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 607s Selecting previously unselected package libpangocairo-1.0-0:arm64. 607s Preparing to unpack .../088-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 607s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 607s Selecting previously unselected package libpaper2:arm64. 607s Preparing to unpack .../089-libpaper2_2.2.5-0.3_arm64.deb ... 607s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 607s Selecting previously unselected package libpaper-utils. 607s 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libpkgconf3:arm64 (1.8.1-4) ... 607s Selecting previously unselected package zlib1g-dev:arm64. 607s Preparing to unpack .../096-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 607s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 607s Selecting previously unselected package libpng-dev:arm64. 607s Preparing to unpack .../097-libpng-dev_1.6.47-1_arm64.deb ... 607s Unpacking libpng-dev:arm64 (1.6.47-1) ... 607s Selecting previously unselected package libreadline-dev:arm64. 607s Preparing to unpack .../098-libreadline-dev_8.2-6_arm64.deb ... 607s Unpacking libreadline-dev:arm64 (8.2-6) ... 607s Selecting previously unselected package libsharpyuv0:arm64. 607s Preparing to unpack .../099-libsharpyuv0_1.5.0-0.1_arm64.deb ... 607s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 607s Selecting previously unselected package libsm6:arm64. 607s Preparing to unpack .../100-libsm6_2%3a1.2.4-1_arm64.deb ... 607s Unpacking libsm6:arm64 (2:1.2.4-1) ... 607s Selecting previously unselected package libtcl8.6:arm64. 607s Preparing to unpack .../101-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 607s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 607s Selecting previously unselected package libjbig0:arm64. 607s Preparing to unpack .../102-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 607s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 607s Selecting previously unselected package libwebp7:arm64. 607s Preparing to unpack .../103-libwebp7_1.5.0-0.1_arm64.deb ... 607s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 607s Selecting previously unselected package libtiff6:arm64. 607s Preparing to unpack .../104-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 607s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 607s Selecting previously unselected package libxft2:arm64. 607s Preparing to unpack .../105-libxft2_2.3.6-1build1_arm64.deb ... 607s Unpacking libxft2:arm64 (2.3.6-1build1) ... 607s Selecting previously unselected package libxss1:arm64. 607s Preparing to unpack .../106-libxss1_1%3a1.2.3-1build3_arm64.deb ... 607s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 607s Selecting previously unselected package libtk8.6:arm64. 607s Preparing to unpack .../107-libtk8.6_8.6.16-1_arm64.deb ... 607s Unpacking libtk8.6:arm64 (8.6.16-1) ... 607s Selecting previously unselected package libxt6t64:arm64. 607s Preparing to unpack .../108-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 607s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 607s Selecting previously unselected package zip. 608s Preparing to unpack .../109-zip_3.0-14ubuntu2_arm64.deb ... 608s Unpacking zip (3.0-14ubuntu2) ... 608s Selecting previously unselected package unzip. 608s Preparing to unpack .../110-unzip_6.0-28ubuntu6_arm64.deb ... 608s Unpacking unzip (6.0-28ubuntu6) ... 608s Selecting previously unselected package xdg-utils. 608s Preparing to unpack .../111-xdg-utils_1.2.1-2ubuntu1_all.deb ... 608s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 608s Selecting previously unselected package r-base-core. 608s Preparing to unpack .../112-r-base-core_4.4.3-1_arm64.deb ... 608s Unpacking r-base-core (4.4.3-1) ... 608s Selecting previously unselected package r-cran-littler. 608s Preparing to unpack .../113-r-cran-littler_0.3.20-2_arm64.deb ... 608s Unpacking r-cran-littler (0.3.20-2) ... 608s Selecting previously unselected package littler. 608s Preparing to unpack .../114-littler_0.3.20-2_all.deb ... 608s Unpacking littler (0.3.20-2) ... 608s Selecting previously unselected package node-bootstrap-sass. 608s Preparing to unpack .../115-node-bootstrap-sass_3.4.3-2_all.deb ... 608s Unpacking node-bootstrap-sass (3.4.3-2) ... 608s Selecting previously unselected package node-html5shiv. 608s Preparing to unpack .../116-node-html5shiv_3.7.3+dfsg-5_all.deb ... 608s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 608s Selecting previously unselected package node-normalize.css. 608s Preparing to unpack .../117-node-normalize.css_8.0.1-5_all.deb ... 608s Unpacking node-normalize.css (8.0.1-5) ... 608s Selecting previously unselected package liblzma-dev:arm64. 608s Preparing to unpack .../118-liblzma-dev_5.6.4-1_arm64.deb ... 608s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 608s Selecting previously unselected package pkgconf-bin. 608s Preparing to unpack .../119-pkgconf-bin_1.8.1-4_arm64.deb ... 608s Unpacking pkgconf-bin (1.8.1-4) ... 608s Selecting previously unselected package pkgconf:arm64. 608s Preparing to unpack .../120-pkgconf_1.8.1-4_arm64.deb ... 608s Unpacking pkgconf:arm64 (1.8.1-4) ... 608s Selecting previously unselected package libtirpc-dev:arm64. 608s Preparing to unpack .../121-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 608s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 608s Selecting previously unselected package r-base-dev. 608s Preparing to unpack .../122-r-base-dev_4.4.3-1_all.deb ... 608s Unpacking r-base-dev (4.4.3-1) ... 608s Selecting previously unselected package pkg-r-autopkgtest. 608s Preparing to unpack .../123-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 608s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 608s Selecting previously unselected package r-cran-mass. 608s Preparing to unpack .../124-r-cran-mass_7.3-64-1_arm64.deb ... 608s Unpacking r-cran-mass (7.3-64-1) ... 608s Selecting previously unselected package r-cran-pixmap. 608s Preparing to unpack .../125-r-cran-pixmap_0.4-13-1_all.deb ... 608s Unpacking r-cran-pixmap (0.4-13-1) ... 609s Selecting previously unselected package r-cran-lattice. 609s Preparing to unpack .../126-r-cran-lattice_0.22-6-1_arm64.deb ... 609s Unpacking r-cran-lattice (0.22-6-1) ... 609s Selecting previously unselected package r-cran-sp. 609s Preparing to unpack .../127-r-cran-sp_1%3a2.2-0+dfsg-1_arm64.deb ... 609s Unpacking r-cran-sp (1:2.2-0+dfsg-1) ... 609s Selecting previously unselected package r-cran-pkgkitten. 609s Preparing to unpack .../128-r-cran-pkgkitten_0.2.4-1_all.deb ... 609s Unpacking r-cran-pkgkitten (0.2.4-1) ... 609s Selecting previously unselected package r-cran-rcpp. 609s Preparing to unpack .../129-r-cran-rcpp_1.0.14-1_arm64.deb ... 609s Unpacking r-cran-rcpp (1.0.14-1) ... 609s Selecting previously unselected package r-cran-rcpparmadillo. 609s Preparing to unpack .../130-r-cran-rcpparmadillo_14.2.3-1-1_arm64.deb ... 609s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ... 609s Selecting previously unselected package r-cran-ade4. 609s Preparing to unpack .../131-r-cran-ade4_1.7-23-1_arm64.deb ... 609s Unpacking r-cran-ade4 (1.7-23-1) ... 609s Selecting previously unselected package r-cran-cli. 609s Preparing to unpack .../132-r-cran-cli_3.6.4-1_arm64.deb ... 609s Unpacking r-cran-cli (3.6.4-1) ... 609s Selecting previously unselected package r-cran-glue. 609s Preparing to unpack .../133-r-cran-glue_1.8.0-1_arm64.deb ... 609s Unpacking r-cran-glue (1.8.0-1) ... 609s Selecting previously unselected package r-cran-rlang. 609s Preparing to unpack .../134-r-cran-rlang_1.1.5-1_arm64.deb ... 609s Unpacking r-cran-rlang (1.1.5-1) ... 609s Selecting previously unselected package r-cran-lifecycle. 609s Preparing to unpack .../135-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 609s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 609s Selecting previously unselected package r-cran-magrittr. 609s Preparing to unpack .../136-r-cran-magrittr_2.0.3-1_arm64.deb ... 609s Unpacking r-cran-magrittr (2.0.3-1) ... 609s Selecting previously unselected package r-cran-matrix. 609s Preparing to unpack .../137-r-cran-matrix_1.7-3-1_arm64.deb ... 609s Unpacking r-cran-matrix (1.7-3-1) ... 609s Selecting previously unselected package r-cran-pkgconfig. 609s Preparing to unpack .../138-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 609s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 609s Selecting previously unselected package r-cran-vctrs. 609s Preparing to unpack .../139-r-cran-vctrs_0.6.5-1_arm64.deb ... 609s Unpacking r-cran-vctrs (0.6.5-1) ... 609s Selecting previously unselected package r-cran-cpp11. 609s Preparing to unpack .../140-r-cran-cpp11_0.5.2-1_all.deb ... 609s Unpacking r-cran-cpp11 (0.5.2-1) ... 609s Selecting previously unselected package r-cran-igraph. 609s Preparing to unpack .../141-r-cran-igraph_2.1.4-1_arm64.deb ... 609s Unpacking r-cran-igraph (2.1.4-1) ... 610s Selecting previously unselected package r-cran-nlme. 610s Preparing to unpack .../142-r-cran-nlme_3.1.167-1_arm64.deb ... 610s Unpacking r-cran-nlme (3.1.167-1) ... 610s Selecting previously unselected package r-cran-digest. 610s Preparing to unpack .../143-r-cran-digest_0.6.37-1_arm64.deb ... 610s Unpacking r-cran-digest (0.6.37-1) ... 610s Selecting previously unselected package r-cran-ape. 610s Preparing to unpack .../144-r-cran-ape_5.8-1-1_arm64.deb ... 610s Unpacking r-cran-ape (5.8-1-1) ... 610s Selecting previously unselected package r-cran-later. 610s Preparing to unpack .../145-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 610s Unpacking r-cran-later (1.4.1+dfsg-1) ... 610s Selecting previously unselected package r-cran-fastmap. 610s Preparing to unpack .../146-r-cran-fastmap_1.2.0-1_arm64.deb ... 610s Unpacking r-cran-fastmap (1.2.0-1) ... 610s Selecting previously unselected package r-cran-r6. 610s Preparing to unpack .../147-r-cran-r6_2.6.1-1_all.deb ... 610s Unpacking r-cran-r6 (2.6.1-1) ... 610s Selecting previously unselected package r-cran-promises. 610s Preparing to unpack .../148-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 610s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 610s Selecting previously unselected package r-cran-httpuv. 610s Preparing to unpack .../149-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 610s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 610s Selecting previously unselected package r-cran-mime. 610s Preparing to unpack .../150-r-cran-mime_0.12-2_arm64.deb ... 610s Unpacking r-cran-mime (0.12-2) ... 610s Selecting previously unselected package r-cran-jsonlite. 610s Preparing to unpack .../151-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 610s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 610s Selecting previously unselected package r-cran-xtable. 610s Preparing to unpack .../152-r-cran-xtable_1%3a1.8-4-2_all.deb ... 610s Unpacking r-cran-xtable (1:1.8-4-2) ... 610s Selecting previously unselected package r-cran-base64enc. 610s Preparing to unpack .../153-r-cran-base64enc_0.1-3-3_arm64.deb ... 610s Unpacking r-cran-base64enc (0.1-3-3) ... 610s Selecting previously unselected package r-cran-htmltools. 610s Preparing to unpack .../154-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 610s Unpacking r-cran-htmltools (0.5.8.1-1) ... 610s Selecting previously unselected package r-cran-fontawesome. 610s Preparing to unpack .../155-r-cran-fontawesome_0.5.3-1_all.deb ... 610s Unpacking r-cran-fontawesome (0.5.3-1) ... 610s Selecting previously unselected package r-cran-sourcetools. 610s Preparing to unpack .../156-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 610s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 610s Selecting previously unselected package r-cran-crayon. 610s Preparing to unpack .../157-r-cran-crayon_1.5.3-1_all.deb ... 610s Unpacking r-cran-crayon (1.5.3-1) ... 610s Selecting previously unselected package r-cran-withr. 610s Preparing to unpack .../158-r-cran-withr_3.0.2+dfsg-1_all.deb ... 610s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 610s Selecting previously unselected package r-cran-commonmark. 610s Preparing to unpack .../159-r-cran-commonmark_1.9.2-2_arm64.deb ... 610s Unpacking r-cran-commonmark (1.9.2-2) ... 610s Selecting previously unselected package r-cran-cachem. 610s Preparing to unpack .../160-r-cran-cachem_1.1.0-1_arm64.deb ... 610s Unpacking r-cran-cachem (1.1.0-1) ... 611s Selecting previously unselected package r-cran-jquerylib. 611s Preparing to unpack .../161-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 611s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 611s Selecting previously unselected package r-cran-memoise. 611s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 611s Unpacking r-cran-memoise (2.0.1-1) ... 611s Selecting previously unselected package r-cran-fs. 611s Preparing to unpack .../163-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 611s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 611s Selecting previously unselected package r-cran-rappdirs. 611s Preparing to unpack .../164-r-cran-rappdirs_0.3.3-1_arm64.deb ... 611s Unpacking r-cran-rappdirs (0.3.3-1) ... 611s Selecting previously unselected package r-cran-sass. 611s Preparing to unpack .../165-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 611s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 611s Selecting previously unselected package r-cran-bslib. 611s Preparing to unpack .../166-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 611s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 611s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 611s Preparing to unpack .../167-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 611s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 611s Selecting previously unselected package r-cran-shiny. 611s Preparing to unpack .../168-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 611s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 611s Selecting previously unselected package r-cran-gtable. 611s Preparing to unpack .../169-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 611s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 611s Selecting previously unselected package r-cran-isoband. 611s Preparing to unpack .../170-r-cran-isoband_0.2.7-1_arm64.deb ... 611s Unpacking r-cran-isoband (0.2.7-1) ... 611s Selecting previously unselected package r-cran-mgcv. 611s Preparing to unpack .../171-r-cran-mgcv_1.9-1-1_arm64.deb ... 611s Unpacking r-cran-mgcv (1.9-1-1) ... 611s Selecting previously unselected package r-cran-farver. 611s Preparing to unpack .../172-r-cran-farver_2.1.2-1_arm64.deb ... 611s Unpacking r-cran-farver (2.1.2-1) ... 611s Selecting previously unselected package r-cran-labeling. 611s Preparing to unpack .../173-r-cran-labeling_0.4.3-1_all.deb ... 611s Unpacking r-cran-labeling (0.4.3-1) ... 611s Selecting previously unselected package r-cran-colorspace. 611s Preparing to unpack .../174-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 611s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 611s Selecting previously unselected package r-cran-munsell. 611s Preparing to unpack .../175-r-cran-munsell_0.5.1-1_all.deb ... 611s Unpacking r-cran-munsell (0.5.1-1) ... 611s Selecting previously unselected package r-cran-rcolorbrewer. 611s Preparing to unpack .../176-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 611s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 611s Selecting previously unselected package r-cran-viridislite. 611s Preparing to unpack .../177-r-cran-viridislite_0.4.2-2_all.deb ... 611s Unpacking r-cran-viridislite (0.4.2-2) ... 612s Selecting previously unselected package r-cran-scales. 612s Preparing to unpack .../178-r-cran-scales_1.3.0-1_all.deb ... 612s Unpacking r-cran-scales (1.3.0-1) ... 612s Selecting previously unselected package r-cran-fansi. 612s Preparing to unpack .../179-r-cran-fansi_1.0.5-1_arm64.deb ... 612s Unpacking r-cran-fansi (1.0.5-1) ... 612s Selecting previously unselected package r-cran-utf8. 612s Preparing to unpack .../180-r-cran-utf8_1.2.4-1_arm64.deb ... 612s Unpacking r-cran-utf8 (1.2.4-1) ... 612s Selecting previously unselected package r-cran-pillar. 612s Preparing to unpack .../181-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 612s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 612s Selecting previously unselected package r-cran-tibble. 612s Preparing to unpack .../182-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 612s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 612s Selecting previously unselected package r-cran-ggplot2. 612s Preparing to unpack .../183-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 612s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 612s Selecting previously unselected package r-cran-segmented. 612s Preparing to unpack .../184-r-cran-segmented_2.1-4-1_all.deb ... 612s Unpacking r-cran-segmented (2.1-4-1) ... 612s Selecting previously unselected package r-cran-seqinr. 612s Preparing to unpack .../185-r-cran-seqinr_4.2-36-1_arm64.deb ... 612s Unpacking r-cran-seqinr (4.2-36-1) ... 612s Selecting previously unselected package r-cran-boot. 612s Preparing to unpack .../186-r-cran-boot_1.3-31-1_all.deb ... 612s Unpacking r-cran-boot (1.3-31-1) ... 612s Selecting previously unselected package r-cran-plyr. 612s Preparing to unpack .../187-r-cran-plyr_1.8.9-1_arm64.deb ... 612s Unpacking r-cran-plyr (1.8.9-1) ... 612s Selecting previously unselected package r-cran-stringi. 612s Preparing to unpack .../188-r-cran-stringi_1.8.4-1build1_arm64.deb ... 612s Unpacking r-cran-stringi (1.8.4-1build1) ... 612s Selecting previously unselected package r-cran-stringr. 612s Preparing to unpack .../189-r-cran-stringr_1.5.1-1_all.deb ... 612s Unpacking r-cran-stringr (1.5.1-1) ... 612s Selecting previously unselected package r-cran-reshape2. 612s Preparing to unpack .../190-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 612s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 612s Selecting previously unselected package r-cran-generics. 612s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 612s Unpacking r-cran-generics (0.1.3-1) ... 612s Selecting previously unselected package r-cran-tidyselect. 612s Preparing to unpack .../192-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 612s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 612s Selecting previously unselected package r-cran-dplyr. 612s Preparing to unpack .../193-r-cran-dplyr_1.1.4-4_arm64.deb ... 612s Unpacking r-cran-dplyr (1.1.4-4) ... 612s Selecting previously unselected package r-cran-permute. 612s Preparing to unpack .../194-r-cran-permute_0.9-7-1_all.deb ... 612s Unpacking r-cran-permute (0.9-7-1) ... 613s Selecting previously unselected package r-cran-cluster. 613s Preparing to unpack .../195-r-cran-cluster_2.1.8-1_arm64.deb ... 613s Unpacking r-cran-cluster (2.1.8-1) ... 613s Selecting previously unselected package r-cran-vegan. 613s Preparing to unpack .../196-r-cran-vegan_2.6-10+dfsg-1ubuntu2_arm64.deb ... 613s Unpacking r-cran-vegan (2.6-10+dfsg-1ubuntu2) ... 613s Selecting previously unselected package r-cran-adegenet. 613s Preparing to unpack .../197-r-cran-adegenet_2.1.11-1_arm64.deb ... 613s Unpacking r-cran-adegenet (2.1.11-1) ... 613s Selecting previously unselected package r-cran-hms. 613s Preparing to unpack .../198-r-cran-hms_1.1.3-1_all.deb ... 613s Unpacking r-cran-hms (1.1.3-1) ... 613s Selecting previously unselected package r-cran-prettyunits. 613s Preparing to unpack .../199-r-cran-prettyunits_1.2.0-1_all.deb ... 613s Unpacking r-cran-prettyunits (1.2.0-1) ... 613s Selecting previously unselected package r-cran-progress. 613s Preparing to unpack .../200-r-cran-progress_1.2.3-1_all.deb ... 613s Unpacking r-cran-progress (1.2.3-1) ... 613s Selecting previously unselected package r-cran-rncl. 613s Preparing to unpack .../201-r-cran-rncl_0.8.7-1_arm64.deb ... 613s Unpacking r-cran-rncl (0.8.7-1) ... 613s Selecting previously unselected package r-cran-xml. 613s Preparing to unpack .../202-r-cran-xml_3.99-0.18-1_arm64.deb ... 613s Unpacking r-cran-xml (3.99-0.18-1) ... 613s Selecting previously unselected package r-cran-curl. 613s Preparing to unpack .../203-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 613s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 613s Selecting previously unselected package r-cran-sys. 613s Preparing to unpack .../204-r-cran-sys_3.4.3-1_arm64.deb ... 613s Unpacking r-cran-sys (3.4.3-1) ... 613s Selecting previously unselected package r-cran-askpass. 613s Preparing to unpack .../205-r-cran-askpass_1.2.1-1_arm64.deb ... 613s Unpacking r-cran-askpass (1.2.1-1) ... 613s Selecting previously unselected package r-cran-openssl. 613s Preparing to unpack .../206-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 613s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 613s Selecting previously unselected package r-cran-httr. 613s Preparing to unpack .../207-r-cran-httr_1.4.7+dfsg-1_all.deb ... 613s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 613s Selecting previously unselected package r-cran-uuid. 613s Preparing to unpack .../208-r-cran-uuid_1.2-1-1_arm64.deb ... 613s Unpacking r-cran-uuid (1.2-1-1) ... 613s Selecting previously unselected package r-cran-purrr. 613s Preparing to unpack .../209-r-cran-purrr_1.0.4-1_arm64.deb ... 613s Unpacking r-cran-purrr (1.0.4-1) ... 613s Selecting previously unselected package r-cran-tidyr. 613s Preparing to unpack .../210-r-cran-tidyr_1.3.1-1_arm64.deb ... 613s Unpacking r-cran-tidyr (1.3.1-1) ... 613s Selecting previously unselected package r-cran-xml2. 613s Preparing to unpack .../211-r-cran-xml2_1.3.7-1_arm64.deb ... 613s Unpacking r-cran-xml2 (1.3.7-1) ... 613s Selecting previously unselected package r-cran-rnexml. 613s Preparing to unpack .../212-r-cran-rnexml_2.4.11+ds-1_all.deb ... 613s Unpacking r-cran-rnexml (2.4.11+ds-1) ... 613s Selecting previously unselected package r-cran-phylobase. 613s Preparing to unpack .../213-r-cran-phylobase_0.8.12-1_arm64.deb ... 613s Unpacking r-cran-phylobase (0.8.12-1) ... 613s Selecting previously unselected package r-cran-adephylo. 613s Preparing to unpack .../214-r-cran-adephylo_1.1-16-1_arm64.deb ... 613s Unpacking r-cran-adephylo (1.1-16-1) ... 614s Setting up libjs-json (0~20221030+~1.0.8-1) ... 614s Setting up javascript-common (12) ... 614s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 614s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 614s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 614s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 614s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 614s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 614s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 614s Setting up libjs-popper.js (1.16.1+ds-6) ... 614s Setting up libxcb-render0:arm64 (1.17.0-2) ... 614s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 614s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 614s Setting up unzip (6.0-28ubuntu6) ... 614s Setting up x11-common (1:7.7+23ubuntu3) ... 614s Setting up node-html5shiv (3.7.3+dfsg-5) ... 614s Setting up libdeflate0:arm64 (1.23-1) ... 614s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 614s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 614s Setting up libreadline-dev:arm64 (8.2-6) ... 614s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 614s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 614s Setting up libpcre2-16-0:arm64 (10.45-1) ... 614s Setting up libjs-es5-shim (4.6.7-2) ... 614s Setting up zip (3.0-14ubuntu2) ... 614s Setting up libpcre2-32-0:arm64 (10.45-1) ... 614s Setting up libblas3:arm64 (3.12.1-2) ... 614s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 614s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 614s Setting up libpkgconf3:arm64 (1.8.1-4) ... 614s Setting up libjs-d3 (3.5.17-4) ... 614s Setting up fonts-dejavu-mono (2.37-8) ... 614s Setting up libmpc3:arm64 (1.3.1-1build2) ... 614s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 614s Setting up icu-devtools (76.1-1ubuntu2) ... 614s Setting up fonts-dejavu-core (2.37-8) ... 614s Setting up pkgconf-bin (1.8.1-4) ... 614s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 614s Setting up libltdl7:arm64 (2.5.4-4) ... 614s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 614s Setting up libwebp7:arm64 (1.5.0-0.1) ... 614s Setting up liblzma-dev:arm64 (5.6.4-1) ... 614s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 614s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 614s Setting up libpcre2-posix3:arm64 (10.45-1) ... 614s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 614s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 614s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 614s Setting up libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 614s 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update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 614s Setting up dctrl-tools (2.24-3build3) ... 614s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 614s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 614s Setting up libbz2-dev:arm64 (1.0.8-6) ... 614s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 614s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 614s Setting up libice6:arm64 (2:1.1.1-1) ... 614s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 614s Setting up liblapack3:arm64 (3.12.1-2) ... 614s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 614s Setting up libamd3:arm64 (1:7.8.3+dfsg-3) ... 614s Setting up libpcre2-dev:arm64 (10.45-1) ... 614s Setting up libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 614s Setting up 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(0.2.4-1) ... 617s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 617s Setting up r-cran-magrittr (2.0.3-1) ... 617s Setting up r-cran-rappdirs (0.3.3-1) ... 617s Setting up r-cran-littler (0.3.20-2) ... 617s Setting up r-cran-permute (0.9-7-1) ... 617s Setting up r-cran-fs (1.6.5+dfsg-1) ... 617s Setting up r-cran-rcpp (1.0.14-1) ... 617s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 617s Setting up r-cran-boot (1.3-31-1) ... 617s Setting up r-cran-rlang (1.1.5-1) ... 617s Setting up littler (0.3.20-2) ... 617s Setting up r-cran-uuid (1.2-1-1) ... 617s Setting up r-cran-sys (3.4.3-1) ... 617s Setting up r-cran-withr (3.0.2+dfsg-1) ... 617s Setting up r-cran-mime (0.12-2) ... 617s Setting up r-cran-generics (0.1.3-1) ... 617s Setting up r-cran-base64enc (0.1-3-3) ... 617s Setting up r-cran-digest (0.6.37-1) ... 617s Setting up r-cran-ape (5.8-1-1) ... 617s Setting up r-cran-prettyunits (1.2.0-1) ... 617s Setting up r-cran-fansi (1.0.5-1) ... 617s Setting up r-cran-mass (7.3-64-1) ... 617s Setting up r-cran-glue (1.8.0-1) ... 617s Setting up r-cran-xtable (1:1.8-4-2) ... 617s Setting up r-cran-cli (3.6.4-1) ... 617s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 617s Setting up gcc (4:14.2.0-1ubuntu1) ... 617s Setting up r-cran-askpass (1.2.1-1) ... 617s Setting up r-cran-fastmap (1.2.0-1) ... 617s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 617s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 617s Setting up r-cran-sp (1:2.2-0+dfsg-1) ... 617s Setting up r-cran-utf8 (1.2.4-1) ... 617s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 617s Setting up r-cran-stringi (1.8.4-1build1) ... 617s Setting up r-cran-cpp11 (0.5.2-1) ... 617s Setting up r-cran-segmented (2.1-4-1) ... 617s Setting up r-cran-plyr (1.8.9-1) ... 617s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 617s Setting up r-cran-isoband (0.2.7-1) ... 617s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 617s Setting up r-cran-later (1.4.1+dfsg-1) ... 617s Setting up r-cran-matrix (1.7-3-1) ... 617s Setting up r-cran-htmltools (0.5.8.1-1) ... 617s Setting up r-cran-mgcv (1.9-1-1) ... 617s Setting up g++ (4:14.2.0-1ubuntu1) ... 617s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 617s Setting up r-cran-cachem (1.1.0-1) ... 617s Setting up r-cran-sass (0.4.9+dfsg-1) ... 617s Setting up build-essential (12.10ubuntu1) ... 617s Setting up r-cran-rcpparmadillo (14.2.3-1-1) ... 617s Setting up r-cran-vctrs (0.6.5-1) ... 617s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 617s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 617s Setting up r-cran-stringr (1.5.1-1) ... 617s Setting up r-cran-xml2 (1.3.7-1) ... 617s Setting up r-cran-munsell (0.5.1-1) ... 617s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 617s Setting up r-cran-fontawesome (0.5.3-1) ... 617s Setting up r-cran-igraph (2.1.4-1) ... 617s Setting up r-cran-ade4 (1.7-23-1) ... 617s Setting up gfortran (4:14.2.0-1ubuntu1) ... 617s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 617s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 617s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 617s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 617s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 617s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 617s Setting up r-cran-reshape2 (1.4.4-2build1) ... 617s Setting up r-cran-httr (1.4.7+dfsg-1) ... 617s Setting up r-cran-hms (1.1.3-1) ... 617s Setting up r-cran-scales (1.3.0-1) ... 617s Setting up r-cran-memoise (2.0.1-1) ... 617s Setting up r-cran-promises (1.3.2+dfsg-1) ... 617s Setting up r-cran-purrr (1.0.4-1) ... 617s Setting up r-cran-vegan (2.6-10+dfsg-1ubuntu2) ... 617s Setting up r-cran-dplyr (1.1.4-4) ... 617s Setting up r-cran-progress (1.2.3-1) ... 617s Setting up r-base-dev (4.4.3-1) ... 617s Setting up r-cran-rncl (0.8.7-1) ... 617s Setting up r-cran-seqinr (4.2-36-1) ... 617s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 617s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 617s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 617s Setting up r-cran-tidyr (1.3.1-1) ... 617s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 617s Setting up r-cran-rnexml (2.4.11+ds-1) ... 617s Setting up r-cran-phylobase (0.8.12-1) ... 617s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 617s Setting up r-cran-adegenet (2.1.11-1) ... 617s Setting up r-cran-adephylo (1.1-16-1) ... 617s Processing triggers for libc-bin (2.41-1ubuntu2) ... 617s Processing triggers for man-db (2.13.0-1) ... 619s Processing triggers for install-info (7.1.1-1) ... 621s autopkgtest [15:26:58]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 621s autopkgtest [15:26:58]: test pkg-r-autopkgtest: [----------------------- 622s Test: Try to load the R library adephylo 622s 622s R version 4.4.3 (2025-02-28) -- "Trophy Case" 622s Copyright (C) 2025 The R Foundation for Statistical Computing 622s Platform: aarch64-unknown-linux-gnu 622s 622s R is free software and comes with ABSOLUTELY NO WARRANTY. 622s You are welcome to redistribute it under certain conditions. 622s Type 'license()' or 'licence()' for distribution details. 622s 622s R is a collaborative project with many contributors. 622s Type 'contributors()' for more information and 622s 'citation()' on how to cite R or R packages in publications. 622s 622s Type 'demo()' for some demos, 'help()' for on-line help, or 622s 'help.start()' for an HTML browser interface to help. 622s Type 'q()' to quit R. 622s 622s > library('adephylo') 622s Loading required package: ade4 625s > 625s > 625s Other tests are currently unsupported! 625s They will be progressively added. 625s autopkgtest [15:27:02]: test pkg-r-autopkgtest: -----------------------] 626s autopkgtest [15:27:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 626s pkg-r-autopkgtest PASS 626s autopkgtest [15:27:03]: @@@@@@@@@@@@@@@@@@@@ summary 626s run-unit-test PASS 626s pkg-r-autopkgtest PASS 632s nova [W] Using flock in prodstack6-arm64 632s Creating nova instance adt-plucky-arm64-r-cran-adephylo-20250315-151637-juju-7f2275-prod-proposed-migration-environment-2-defeb771-23a6-4456-95b3-1b66defc0410 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 632s nova [W] Timed out waiting for 19aa2da6-7a4d-4b34-9b1f-9113c30a63c0 to get deleted. 632s nova [W] Using flock in prodstack6-arm64 632s flock: timeout while waiting to get lock 632s Creating nova instance adt-plucky-arm64-r-cran-adephylo-20250315-151637-juju-7f2275-prod-proposed-migration-environment-2-defeb771-23a6-4456-95b3-1b66defc0410 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 632s nova [W] Timed out waiting for 8d55bf1e-e385-4e9a-8123-dc92736913c8 to get deleted.