0s autopkgtest [17:14:53]: starting date and time: 2025-02-03 17:14:53+0000
  0s autopkgtest [17:14:53]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:14:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4m6mu9zi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-testthat --apt-upgrade r-cran-adegenet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-testthat/3.2.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-22.secgroup --name adt-plucky-arm64-r-cran-adegenet-20250203-171453-juju-7f2275-prod-proposed-migration-environment-2-017dd71d-277e-467c-bb96-96e1c265aa39 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
308s autopkgtest [17:20:01]: testbed dpkg architecture: arm64
308s autopkgtest [17:20:01]: testbed apt version: 2.9.18
309s autopkgtest [17:20:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup
309s autopkgtest [17:20:02]: testbed release detected to be: None
311s autopkgtest [17:20:04]: updating testbed package index (apt update)
312s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
312s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
312s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
312s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
313s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [897 kB]
313s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.0 kB]
313s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.5 kB]
313s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB]
313s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [835 kB]
315s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4816 B]
315s Fetched 2050 kB in 4s (553 kB/s)
317s Reading package lists...
318s Reading package lists...
318s Building dependency tree...
318s Reading state information...
319s Calculating upgrade...
320s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
320s Reading package lists...
321s Building dependency tree...
321s Reading state information...
323s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
323s autopkgtest [17:20:16]: upgrading testbed (apt dist-upgrade and autopurge)
323s Reading package lists...
324s Building dependency tree...
324s Reading state information...
325s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
325s Starting 2 pkgProblemResolver with broken count: 0
325s Done
326s Entering ResolveByKeep
327s 
327s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
328s Reading package lists...
328s Building dependency tree...
328s Reading state information...
329s Starting pkgProblemResolver with broken count: 0
329s Starting 2 pkgProblemResolver with broken count: 0
330s Done
331s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
335s autopkgtest [17:20:28]: testbed running kernel: Linux 6.12.0-12-generic #12-Ubuntu SMP PREEMPT_DYNAMIC Thu Jan 23 07:24:57 UTC 2025
335s autopkgtest [17:20:28]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-adegenet
338s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adegenet 2.1.10-1 (dsc) [2280 B]
338s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adegenet 2.1.10-1 (tar) [1701 kB]
338s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-adegenet 2.1.10-1 (diff) [4872 B]
338s gpgv: Signature made Mon Jan 30 12:39:21 2023 UTC
338s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
338s gpgv:                issuer "tille@debian.org"
338s gpgv: Can't check signature: No public key
338s dpkg-source: warning: cannot verify inline signature for ./r-cran-adegenet_2.1.10-1.dsc: no acceptable signature found
338s autopkgtest [17:20:31]: testing package r-cran-adegenet version 2.1.10-1
339s autopkgtest [17:20:32]: build not needed
344s autopkgtest [17:20:37]: test run-unit-test: preparing testbed
344s Reading package lists...
344s Building dependency tree...
344s Reading state information...
345s Starting pkgProblemResolver with broken count: 0
345s Starting 2 pkgProblemResolver with broken count: 0
345s Done
346s The following NEW packages will be installed:
346s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
346s   fonts-font-awesome fonts-glyphicons-halflings javascript-common libamd3
346s   libblas3 libcairo2 libcolamd3 libdatrie1 libdeflate0 libfontconfig1
346s   libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libice6
346s   libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3
346s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
346s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
346s   libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker
346s   liblapack3 liblerc4 libltdl7 libpango-1.0-0 libpangocairo-1.0-0
346s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6
346s   libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
346s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
346s   littler node-bootstrap-sass node-html5shiv node-normalize.css r-base-core
346s   r-cran-ade4 r-cran-adegenet r-cran-ape r-cran-base64enc r-cran-boot
346s   r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli
346s   r-cran-cluster r-cran-colorspace r-cran-commonmark r-cran-cpp11
346s   r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr
346s   r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome
346s   r-cran-fs r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable
346s   r-cran-htmltools r-cran-httpuv r-cran-igraph r-cran-isoband r-cran-jquerylib
346s   r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lifecycle
346s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise
346s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-permute
346s   r-cran-pillar r-cran-pixmap r-cran-pkgbuild r-cran-pkgconfig
346s   r-cran-pkgkitten r-cran-pkgload r-cran-plyr r-cran-praise r-cran-processx
346s   r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer
346s   r-cran-rcpp r-cran-rcpparmadillo r-cran-reshape2 r-cran-rlang
346s   r-cran-rprojroot r-cran-sass r-cran-scales r-cran-segmented r-cran-seqinr
346s   r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-stringi r-cran-stringr
346s   r-cran-testthat r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs
346s   r-cran-vegan r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xtable
346s   unzip x11-common xdg-utils zip
346s 0 upgraded, 157 newly installed, 0 to remove and 0 not upgraded.
346s Need to get 125 MB of archives.
346s After this operation, 248 MB of additional disk space will be used.
346s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
347s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
348s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB]
348s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB]
348s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB]
348s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
348s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
348s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 11+nmu1 [5936 B]
348s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-13ubuntu1 [145 kB]
349s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-2 [13.1 kB]
349s Get:11 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-2 [26.1 kB]
349s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB]
349s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
349s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
349s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
349s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
349s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
350s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-2 [18.2 kB]
350s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
351s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
351s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-13ubuntu1 [437 kB]
351s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-2.1 [42.9 kB]
351s Get:23 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB]
353s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
353s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
358s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
358s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
358s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
360s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
360s Get:30 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
360s Get:31 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
361s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
367s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
369s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
370s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
374s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
377s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
377s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
377s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
377s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
378s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
379s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
379s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB]
400s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
402s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
403s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
403s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB]
406s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB]
406s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB]
406s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
406s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
406s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
407s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
407s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
412s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
412s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
412s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
414s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
414s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
414s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
424s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
425s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
426s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
428s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
428s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.2-1build1 [28.4 MB]
612s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
612s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
612s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
613s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
613s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
613s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
619s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pixmap all 0.4-13-1 [213 kB]
621s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
629s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sp arm64 1:2.1-4+dfsg-1 [1472 kB]
639s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
639s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
653s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpparmadillo arm64 14.2.2-1-1 [843 kB]
659s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ade4 arm64 1.7-22-1 [5324 kB]
693s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.3-1 [1347 kB]
703s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
705s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
714s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
715s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
716s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-2-1 [4153 kB]
742s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
742s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
750s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.1-1 [233 kB]
752s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB]
789s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB]
806s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
808s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ape arm64 5.8-1-1 [2901 kB]
828s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB]
828s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB]
828s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
829s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB]
831s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB]
834s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
834s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [445 kB]
838s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
841s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
841s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB]
843s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
845s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
845s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
845s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
845s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB]
845s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB]
845s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
845s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
845s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
845s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
845s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB]
846s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
847s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
847s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB]
847s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
847s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
848s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
848s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB]
848s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
848s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB]
848s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB]
848s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
848s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
848s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
848s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
848s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
848s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
848s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
848s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
849s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-segmented all 2.1-3-1 [1366 kB]
849s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-seqinr arm64 4.2-36-1 [4013 kB]
849s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-boot all 1.3-31-1 [635 kB]
849s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
849s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB]
849s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
849s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB]
849s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB]
849s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB]
849s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB]
849s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-permute all 0.9-7-1 [228 kB]
849s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB]
849s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vegan arm64 2.6-8+dfsg-1 [3129 kB]
849s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-adegenet arm64 2.1.10-1 [2708 kB]
849s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
849s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.8.1-1 [395 kB]
849s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.5-1 [354 kB]
849s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
849s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
849s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
849s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
849s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
849s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
849s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
850s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
850s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-1 [150 kB]
850s Get:157 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
850s Preconfiguring packages ...
850s Fetched 125 MB in 8min 24s (247 kB/s)
850s Selecting previously unselected package fonts-dejavu-mono.
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850s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ...
850s Unpacking fonts-dejavu-mono (2.37-8) ...
850s Selecting previously unselected package fonts-dejavu-core.
850s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ...
850s Unpacking fonts-dejavu-core (2.37-8) ...
851s Selecting previously unselected package fontconfig-config.
851s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ...
851s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
851s Selecting previously unselected package libfontconfig1:arm64.
851s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ...
851s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ...
851s Selecting previously unselected package fontconfig.
851s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ...
851s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
851s Selecting previously unselected package fonts-font-awesome.
851s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
851s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
851s Selecting previously unselected package fonts-glyphicons-halflings.
851s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
851s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
851s Selecting previously unselected package javascript-common.
851s Preparing to unpack .../007-javascript-common_11+nmu1_all.deb ...
851s Unpacking javascript-common (11+nmu1) ...
851s Selecting previously unselected package libgomp1:arm64.
851s Preparing to unpack .../008-libgomp1_14.2.0-13ubuntu1_arm64.deb ...
851s Unpacking libgomp1:arm64 (14.2.0-13ubuntu1) ...
851s Selecting previously unselected package libsuitesparseconfig7:arm64.
851s Preparing to unpack .../009-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_arm64.deb ...
851s Unpacking libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-2) ...
851s Selecting previously unselected package libamd3:arm64.
851s Preparing to unpack .../010-libamd3_1%3a7.8.3+dfsg-2_arm64.deb ...
851s Unpacking libamd3:arm64 (1:7.8.3+dfsg-2) ...
851s Selecting previously unselected package libblas3:arm64.
851s Preparing to unpack .../011-libblas3_3.12.0-4_arm64.deb ...
851s Unpacking libblas3:arm64 (3.12.0-4) ...
851s Selecting previously unselected package libpixman-1-0:arm64.
851s Preparing to unpack .../012-libpixman-1-0_0.44.0-3_arm64.deb ...
851s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
851s Selecting previously unselected package libxcb-render0:arm64.
851s Preparing to unpack .../013-libxcb-render0_1.17.0-2_arm64.deb ...
851s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
851s Selecting previously unselected package libxcb-shm0:arm64.
851s Preparing to unpack .../014-libxcb-shm0_1.17.0-2_arm64.deb ...
851s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
851s Selecting previously unselected package libxrender1:arm64.
851s Preparing to unpack .../015-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
851s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
851s Selecting previously unselected package libcairo2:arm64.
852s Preparing to unpack .../016-libcairo2_1.18.2-2_arm64.deb ...
852s Unpacking libcairo2:arm64 (1.18.2-2) ...
852s Selecting previously unselected package libcolamd3:arm64.
852s Preparing to unpack .../017-libcolamd3_1%3a7.8.3+dfsg-2_arm64.deb ...
852s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-2) ...
852s Selecting previously unselected package libdatrie1:arm64.
852s Preparing to unpack .../018-libdatrie1_0.2.13-3build1_arm64.deb ...
852s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
852s Selecting previously unselected package libdeflate0:arm64.
852s Preparing to unpack .../019-libdeflate0_1.23-1_arm64.deb ...
852s Unpacking libdeflate0:arm64 (1.23-1) ...
852s Selecting previously unselected package libgfortran5:arm64.
852s Preparing to unpack .../020-libgfortran5_14.2.0-13ubuntu1_arm64.deb ...
852s Unpacking libgfortran5:arm64 (14.2.0-13ubuntu1) ...
852s Selecting previously unselected package libltdl7:arm64.
852s Preparing to unpack .../021-libltdl7_2.5.4-2.1_arm64.deb ...
852s Unpacking libltdl7:arm64 (2.5.4-2.1) ...
852s Selecting previously unselected package libglpk40:arm64.
852s Preparing to unpack .../022-libglpk40_5.0-1build2_arm64.deb ...
852s Unpacking libglpk40:arm64 (5.0-1build2) ...
852s Selecting previously unselected package libgraphite2-3:arm64.
852s Preparing to unpack .../023-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
852s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
852s Selecting previously unselected package libharfbuzz0b:arm64.
852s Preparing to unpack .../024-libharfbuzz0b_10.2.0-1_arm64.deb ...
852s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
852s Selecting previously unselected package x11-common.
852s Preparing to unpack .../025-x11-common_1%3a7.7+23ubuntu3_all.deb ...
852s Unpacking x11-common (1:7.7+23ubuntu3) ...
852s Selecting previously unselected package libice6:arm64.
852s Preparing to unpack .../026-libice6_2%3a1.1.1-1_arm64.deb ...
852s Unpacking libice6:arm64 (2:1.1.1-1) ...
852s Selecting previously unselected package libjpeg-turbo8:arm64.
852s Preparing to unpack .../027-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
852s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
852s Selecting previously unselected package libjpeg8:arm64.
852s Preparing to unpack .../028-libjpeg8_8c-2ubuntu11_arm64.deb ...
852s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
852s Selecting previously unselected package libjs-bootstrap.
852s Preparing to unpack .../029-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
852s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
852s Selecting previously unselected package libjs-popper.js.
852s Preparing to unpack .../030-libjs-popper.js_1.16.1+ds-6_all.deb ...
852s Unpacking libjs-popper.js (1.16.1+ds-6) ...
852s Selecting previously unselected package libjs-bootstrap4.
852s Preparing to unpack .../031-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
852s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
852s Selecting previously unselected package libjs-d3.
852s Preparing to unpack .../032-libjs-d3_3.5.17-4_all.deb ...
852s Unpacking libjs-d3 (3.5.17-4) ...
852s Selecting previously unselected package libjs-es5-shim.
852s Preparing to unpack .../033-libjs-es5-shim_4.6.7-2_all.deb ...
852s Unpacking libjs-es5-shim (4.6.7-2) ...
852s Selecting previously unselected package libjs-highlight.js.
852s Preparing to unpack .../034-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
852s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
852s Selecting previously unselected package libjs-jquery.
852s Preparing to unpack .../035-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
852s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
852s Selecting previously unselected package libjs-jquery-datatables.
853s Preparing to unpack .../036-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
853s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
853s Selecting previously unselected package libjs-sifter.js.
853s Preparing to unpack .../037-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
853s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
853s Selecting previously unselected package libjs-microplugin.js.
853s Preparing to unpack .../038-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
853s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
853s Selecting previously unselected package libjs-jquery-selectize.js.
853s Preparing to unpack .../039-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
853s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
853s Selecting previously unselected package libjs-jquery-ui.
853s Preparing to unpack .../040-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
853s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
853s Selecting previously unselected package libjs-json.
853s Preparing to unpack .../041-libjs-json_0~20221030+~1.0.8-1_all.deb ...
853s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
853s Selecting previously unselected package liblapack3:arm64.
853s Preparing to unpack .../042-liblapack3_3.12.0-4_arm64.deb ...
853s Unpacking liblapack3:arm64 (3.12.0-4) ...
853s Selecting previously unselected package liblerc4:arm64.
853s Preparing to unpack .../043-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
853s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
853s Selecting previously unselected package libthai-data.
853s Preparing to unpack .../044-libthai-data_0.1.29-2build1_all.deb ...
853s Unpacking libthai-data (0.1.29-2build1) ...
853s Selecting previously unselected package libthai0:arm64.
853s Preparing to unpack .../045-libthai0_0.1.29-2build1_arm64.deb ...
853s Unpacking libthai0:arm64 (0.1.29-2build1) ...
853s Selecting previously unselected package libpango-1.0-0:arm64.
853s Preparing to unpack .../046-libpango-1.0-0_1.56.1-1_arm64.deb ...
853s Unpacking libpango-1.0-0:arm64 (1.56.1-1) ...
853s Selecting previously unselected package libpangoft2-1.0-0:arm64.
853s Preparing to unpack .../047-libpangoft2-1.0-0_1.56.1-1_arm64.deb ...
853s Unpacking libpangoft2-1.0-0:arm64 (1.56.1-1) ...
853s Selecting previously unselected package libpangocairo-1.0-0:arm64.
853s Preparing to unpack .../048-libpangocairo-1.0-0_1.56.1-1_arm64.deb ...
853s Unpacking libpangocairo-1.0-0:arm64 (1.56.1-1) ...
853s Selecting previously unselected package libpaper2:arm64.
853s Preparing to unpack .../049-libpaper2_2.2.5-0.3_arm64.deb ...
853s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
853s Selecting previously unselected package libpaper-utils.
853s Preparing to unpack .../050-libpaper-utils_2.2.5-0.3_arm64.deb ...
853s Unpacking libpaper-utils (2.2.5-0.3) ...
853s Selecting previously unselected package libsharpyuv0:arm64.
853s Preparing to unpack .../051-libsharpyuv0_1.5.0-0.1_arm64.deb ...
853s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
854s Selecting previously unselected package libsm6:arm64.
854s Preparing to unpack .../052-libsm6_2%3a1.2.4-1_arm64.deb ...
854s Unpacking libsm6:arm64 (2:1.2.4-1) ...
854s Selecting previously unselected package libtcl8.6:arm64.
854s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
854s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
854s Selecting previously unselected package libjbig0:arm64.
854s Preparing to unpack .../054-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
854s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
854s Selecting previously unselected package libwebp7:arm64.
854s Preparing to unpack .../055-libwebp7_1.5.0-0.1_arm64.deb ...
854s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
854s Selecting previously unselected package libtiff6:arm64.
854s Preparing to unpack .../056-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
854s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
854s Selecting previously unselected package libxft2:arm64.
854s Preparing to unpack .../057-libxft2_2.3.6-1build1_arm64.deb ...
854s Unpacking libxft2:arm64 (2.3.6-1build1) ...
854s Selecting previously unselected package libxss1:arm64.
854s Preparing to unpack .../058-libxss1_1%3a1.2.3-1build3_arm64.deb ...
854s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
854s Selecting previously unselected package libtk8.6:arm64.
854s Preparing to unpack .../059-libtk8.6_8.6.16-1_arm64.deb ...
854s Unpacking libtk8.6:arm64 (8.6.16-1) ...
854s Selecting previously unselected package libxt6t64:arm64.
854s Preparing to unpack .../060-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
854s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
854s Selecting previously unselected package zip.
854s Preparing to unpack .../061-zip_3.0-14ubuntu2_arm64.deb ...
854s Unpacking zip (3.0-14ubuntu2) ...
854s Selecting previously unselected package unzip.
854s Preparing to unpack .../062-unzip_6.0-28ubuntu6_arm64.deb ...
854s Unpacking unzip (6.0-28ubuntu6) ...
854s Selecting previously unselected package xdg-utils.
854s Preparing to unpack .../063-xdg-utils_1.2.1-0ubuntu1_all.deb ...
854s Unpacking xdg-utils (1.2.1-0ubuntu1) ...
854s Selecting previously unselected package r-base-core.
854s Preparing to unpack .../064-r-base-core_4.4.2-1build1_arm64.deb ...
854s Unpacking r-base-core (4.4.2-1build1) ...
854s Selecting previously unselected package r-cran-littler.
854s Preparing to unpack .../065-r-cran-littler_0.3.20-2_arm64.deb ...
854s Unpacking r-cran-littler (0.3.20-2) ...
855s Selecting previously unselected package littler.
855s Preparing to unpack .../066-littler_0.3.20-2_all.deb ...
855s Unpacking littler (0.3.20-2) ...
855s Selecting previously unselected package node-bootstrap-sass.
855s Preparing to unpack .../067-node-bootstrap-sass_3.4.3-2_all.deb ...
855s Unpacking node-bootstrap-sass (3.4.3-2) ...
855s Selecting previously unselected package node-html5shiv.
855s Preparing to unpack .../068-node-html5shiv_3.7.3+dfsg-5_all.deb ...
855s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
855s Selecting previously unselected package node-normalize.css.
855s Preparing to unpack .../069-node-normalize.css_8.0.1-5_all.deb ...
855s Unpacking node-normalize.css (8.0.1-5) ...
855s Selecting previously unselected package r-cran-mass.
855s Preparing to unpack .../070-r-cran-mass_7.3-64-1_arm64.deb ...
855s Unpacking r-cran-mass (7.3-64-1) ...
855s Selecting previously unselected package r-cran-pixmap.
855s Preparing to unpack .../071-r-cran-pixmap_0.4-13-1_all.deb ...
855s Unpacking r-cran-pixmap (0.4-13-1) ...
855s Selecting previously unselected package r-cran-lattice.
855s Preparing to unpack .../072-r-cran-lattice_0.22-6-1_arm64.deb ...
855s Unpacking r-cran-lattice (0.22-6-1) ...
855s Selecting previously unselected package r-cran-sp.
855s Preparing to unpack .../073-r-cran-sp_1%3a2.1-4+dfsg-1_arm64.deb ...
855s Unpacking r-cran-sp (1:2.1-4+dfsg-1) ...
855s Selecting previously unselected package r-cran-pkgkitten.
855s Preparing to unpack .../074-r-cran-pkgkitten_0.2.4-1_all.deb ...
855s Unpacking r-cran-pkgkitten (0.2.4-1) ...
855s Selecting previously unselected package r-cran-rcpp.
855s Preparing to unpack .../075-r-cran-rcpp_1.0.14-1_arm64.deb ...
855s Unpacking r-cran-rcpp (1.0.14-1) ...
855s Selecting previously unselected package r-cran-rcpparmadillo.
855s Preparing to unpack .../076-r-cran-rcpparmadillo_14.2.2-1-1_arm64.deb ...
855s Unpacking r-cran-rcpparmadillo (14.2.2-1-1) ...
855s Selecting previously unselected package r-cran-ade4.
855s Preparing to unpack .../077-r-cran-ade4_1.7-22-1_arm64.deb ...
855s Unpacking r-cran-ade4 (1.7-22-1) ...
855s Selecting previously unselected package r-cran-cli.
855s Preparing to unpack .../078-r-cran-cli_3.6.3-1_arm64.deb ...
855s Unpacking r-cran-cli (3.6.3-1) ...
855s Selecting previously unselected package r-cran-glue.
855s Preparing to unpack .../079-r-cran-glue_1.8.0-1_arm64.deb ...
855s Unpacking r-cran-glue (1.8.0-1) ...
855s Selecting previously unselected package r-cran-rlang.
856s Preparing to unpack .../080-r-cran-rlang_1.1.5-1_arm64.deb ...
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856s Selecting previously unselected package r-cran-lifecycle.
856s Preparing to unpack .../081-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
856s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
856s Selecting previously unselected package r-cran-magrittr.
856s Preparing to unpack .../082-r-cran-magrittr_2.0.3-1_arm64.deb ...
856s Unpacking r-cran-magrittr (2.0.3-1) ...
856s Selecting previously unselected package r-cran-matrix.
856s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_arm64.deb ...
856s Unpacking r-cran-matrix (1.7-2-1) ...
856s Selecting previously unselected package r-cran-pkgconfig.
856s Preparing to unpack .../084-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
856s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
856s Selecting previously unselected package r-cran-vctrs.
856s Preparing to unpack .../085-r-cran-vctrs_0.6.5-1_arm64.deb ...
856s Unpacking r-cran-vctrs (0.6.5-1) ...
856s Selecting previously unselected package r-cran-cpp11.
856s Preparing to unpack .../086-r-cran-cpp11_0.5.1-1_all.deb ...
856s Unpacking r-cran-cpp11 (0.5.1-1) ...
856s Selecting previously unselected package r-cran-igraph.
856s Preparing to unpack .../087-r-cran-igraph_2.1.4-1_arm64.deb ...
856s Unpacking r-cran-igraph (2.1.4-1) ...
856s Selecting previously unselected package r-cran-nlme.
856s Preparing to unpack .../088-r-cran-nlme_3.1.167-1_arm64.deb ...
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856s Selecting previously unselected package r-cran-digest.
856s Preparing to unpack .../089-r-cran-digest_0.6.37-1_arm64.deb ...
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856s Selecting previously unselected package r-cran-ape.
856s Preparing to unpack .../090-r-cran-ape_5.8-1-1_arm64.deb ...
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856s Selecting previously unselected package r-cran-later.
856s Preparing to unpack .../091-r-cran-later_1.4.1+dfsg-1_arm64.deb ...
856s Unpacking r-cran-later (1.4.1+dfsg-1) ...
856s Selecting previously unselected package r-cran-fastmap.
856s Preparing to unpack .../092-r-cran-fastmap_1.2.0-1_arm64.deb ...
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856s Selecting previously unselected package r-cran-r6.
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856s Selecting previously unselected package r-cran-promises.
856s Preparing to unpack .../094-r-cran-promises_1.3.2+dfsg-1_arm64.deb ...
856s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
856s Selecting previously unselected package r-cran-httpuv.
856s Preparing to unpack .../095-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ...
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856s Selecting previously unselected package r-cran-mime.
857s Preparing to unpack .../096-r-cran-mime_0.12-2_arm64.deb ...
857s Unpacking r-cran-mime (0.12-2) ...
857s Selecting previously unselected package r-cran-jsonlite.
857s Preparing to unpack .../097-r-cran-jsonlite_1.8.9+dfsg-1_arm64.deb ...
857s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ...
857s Selecting previously unselected package r-cran-xtable.
857s Preparing to unpack .../098-r-cran-xtable_1%3a1.8-4-2_all.deb ...
857s Unpacking r-cran-xtable (1:1.8-4-2) ...
857s Selecting previously unselected package r-cran-base64enc.
857s Preparing to unpack .../099-r-cran-base64enc_0.1-3-3_arm64.deb ...
857s Unpacking r-cran-base64enc (0.1-3-3) ...
857s Selecting previously unselected package r-cran-htmltools.
857s Preparing to unpack .../100-r-cran-htmltools_0.5.8.1-1_arm64.deb ...
857s Unpacking r-cran-htmltools (0.5.8.1-1) ...
857s Selecting previously unselected package r-cran-fontawesome.
857s Preparing to unpack .../101-r-cran-fontawesome_0.5.3-1_all.deb ...
857s Unpacking r-cran-fontawesome (0.5.3-1) ...
857s Selecting previously unselected package r-cran-sourcetools.
857s Preparing to unpack .../102-r-cran-sourcetools_0.1.7-1-1_arm64.deb ...
857s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
857s Selecting previously unselected package r-cran-crayon.
857s Preparing to unpack .../103-r-cran-crayon_1.5.3-1_all.deb ...
857s Unpacking r-cran-crayon (1.5.3-1) ...
857s Selecting previously unselected package r-cran-withr.
857s Preparing to unpack .../104-r-cran-withr_3.0.2+dfsg-1_all.deb ...
857s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
857s Selecting previously unselected package r-cran-commonmark.
857s Preparing to unpack .../105-r-cran-commonmark_1.9.2-2_arm64.deb ...
857s Unpacking r-cran-commonmark (1.9.2-2) ...
857s Selecting previously unselected package r-cran-cachem.
857s Preparing to unpack .../106-r-cran-cachem_1.1.0-1_arm64.deb ...
857s Unpacking r-cran-cachem (1.1.0-1) ...
857s Selecting previously unselected package r-cran-jquerylib.
857s Preparing to unpack .../107-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
857s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
857s Selecting previously unselected package r-cran-memoise.
857s Preparing to unpack .../108-r-cran-memoise_2.0.1-1_all.deb ...
857s Unpacking r-cran-memoise (2.0.1-1) ...
857s Selecting previously unselected package r-cran-fs.
857s Preparing to unpack .../109-r-cran-fs_1.6.5+dfsg-1_arm64.deb ...
857s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
857s Selecting previously unselected package r-cran-rappdirs.
857s Preparing to unpack .../110-r-cran-rappdirs_0.3.3-1_arm64.deb ...
857s Unpacking r-cran-rappdirs (0.3.3-1) ...
857s Selecting previously unselected package r-cran-sass.
857s Preparing to unpack .../111-r-cran-sass_0.4.9+dfsg-1_arm64.deb ...
857s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
857s Selecting previously unselected package r-cran-bslib.
857s Preparing to unpack .../112-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
857s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
858s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
858s Preparing to unpack .../113-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
858s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
858s Selecting previously unselected package r-cran-shiny.
858s Preparing to unpack .../114-r-cran-shiny_1.9.1+dfsg-1_all.deb ...
858s Unpacking r-cran-shiny (1.9.1+dfsg-1) ...
858s Selecting previously unselected package r-cran-gtable.
858s Preparing to unpack .../115-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
858s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
858s Selecting previously unselected package r-cran-isoband.
858s Preparing to unpack .../116-r-cran-isoband_0.2.7-1_arm64.deb ...
858s Unpacking r-cran-isoband (0.2.7-1) ...
858s Selecting previously unselected package r-cran-mgcv.
858s Preparing to unpack .../117-r-cran-mgcv_1.9-1-1_arm64.deb ...
858s Unpacking r-cran-mgcv (1.9-1-1) ...
858s Selecting previously unselected package r-cran-farver.
858s Preparing to unpack .../118-r-cran-farver_2.1.2-1_arm64.deb ...
858s Unpacking r-cran-farver (2.1.2-1) ...
858s Selecting previously unselected package r-cran-labeling.
858s Preparing to unpack .../119-r-cran-labeling_0.4.3-1_all.deb ...
858s Unpacking r-cran-labeling (0.4.3-1) ...
858s Selecting previously unselected package r-cran-colorspace.
858s Preparing to unpack .../120-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ...
858s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
858s Selecting previously unselected package r-cran-munsell.
858s Preparing to unpack .../121-r-cran-munsell_0.5.1-1_all.deb ...
858s Unpacking r-cran-munsell (0.5.1-1) ...
858s Selecting previously unselected package r-cran-rcolorbrewer.
858s Preparing to unpack .../122-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
858s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
858s Selecting previously unselected package r-cran-viridislite.
858s Preparing to unpack .../123-r-cran-viridislite_0.4.2-2_all.deb ...
858s Unpacking r-cran-viridislite (0.4.2-2) ...
858s Selecting previously unselected package r-cran-scales.
858s Preparing to unpack .../124-r-cran-scales_1.3.0-1_all.deb ...
858s Unpacking r-cran-scales (1.3.0-1) ...
858s Selecting previously unselected package r-cran-fansi.
858s Preparing to unpack .../125-r-cran-fansi_1.0.5-1_arm64.deb ...
858s Unpacking r-cran-fansi (1.0.5-1) ...
858s Selecting previously unselected package r-cran-utf8.
858s Preparing to unpack .../126-r-cran-utf8_1.2.4-1_arm64.deb ...
858s Unpacking r-cran-utf8 (1.2.4-1) ...
858s Selecting previously unselected package r-cran-pillar.
858s Preparing to unpack .../127-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
858s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
858s Selecting previously unselected package r-cran-tibble.
858s Preparing to unpack .../128-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ...
858s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
858s Selecting previously unselected package r-cran-ggplot2.
858s Preparing to unpack .../129-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
858s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
859s Selecting previously unselected package r-cran-segmented.
859s Preparing to unpack .../130-r-cran-segmented_2.1-3-1_all.deb ...
859s Unpacking r-cran-segmented (2.1-3-1) ...
859s Selecting previously unselected package r-cran-seqinr.
859s Preparing to unpack .../131-r-cran-seqinr_4.2-36-1_arm64.deb ...
859s Unpacking r-cran-seqinr (4.2-36-1) ...
859s Selecting previously unselected package r-cran-boot.
859s Preparing to unpack .../132-r-cran-boot_1.3-31-1_all.deb ...
859s Unpacking r-cran-boot (1.3-31-1) ...
859s Selecting previously unselected package r-cran-plyr.
859s Preparing to unpack .../133-r-cran-plyr_1.8.9-1_arm64.deb ...
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859s Selecting previously unselected package r-cran-stringi.
859s Preparing to unpack .../134-r-cran-stringi_1.8.4-1build1_arm64.deb ...
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859s Selecting previously unselected package r-cran-stringr.
859s Preparing to unpack .../135-r-cran-stringr_1.5.1-1_all.deb ...
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859s Selecting previously unselected package r-cran-reshape2.
859s Preparing to unpack .../136-r-cran-reshape2_1.4.4-2build1_arm64.deb ...
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859s Selecting previously unselected package r-cran-generics.
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859s Selecting previously unselected package r-cran-tidyselect.
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859s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
859s Selecting previously unselected package r-cran-dplyr.
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859s Selecting previously unselected package r-cran-permute.
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859s Selecting previously unselected package r-cran-cluster.
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859s Selecting previously unselected package r-cran-vegan.
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859s Selecting previously unselected package r-cran-adegenet.
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859s Selecting previously unselected package r-cran-brio.
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859s Selecting previously unselected package r-cran-ps.
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859s Selecting previously unselected package r-cran-processx.
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859s Selecting previously unselected package r-cran-callr.
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860s Selecting previously unselected package r-cran-waldo.
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860s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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861s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
863s Regenerating fonts cache... done.
863s Setting up libxft2:arm64 (2.3.6-1build1) ...
863s Setting up libtk8.6:arm64 (8.6.16-1) ...
863s Setting up libpango-1.0-0:arm64 (1.56.1-1) ...
863s Setting up libcairo2:arm64 (1.18.2-2) ...
863s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
863s Setting up libpangoft2-1.0-0:arm64 (1.56.1-1) ...
863s Setting up libpangocairo-1.0-0:arm64 (1.56.1-1) ...
863s Setting up r-base-core (4.4.2-1build1) ...
863s Creating config file /etc/R/Renviron with new version
863s Setting up r-cran-crayon (1.5.3-1) ...
863s Setting up r-cran-labeling (0.4.3-1) ...
863s Setting up r-cran-sourcetools (0.1.7-1-1) ...
863s Setting up r-cran-lattice (0.22-6-1) ...
863s Setting up r-cran-ps (1.8.1-1) ...
863s Setting up r-cran-nlme (3.1.167-1) ...
863s Setting up r-cran-farver (2.1.2-1) ...
863s Setting up r-cran-viridislite (0.4.2-2) ...
863s Setting up r-cran-pixmap (0.4-13-1) ...
863s Setting up r-cran-cluster (2.1.8-1) ...
863s Setting up r-cran-commonmark (1.9.2-2) ...
863s Setting up r-cran-r6 (2.5.1-1) ...
863s Setting up r-cran-pkgkitten (0.2.4-1) ...
863s Setting up r-cran-magrittr (2.0.3-1) ...
863s Setting up r-cran-rappdirs (0.3.3-1) ...
863s Setting up r-cran-littler (0.3.20-2) ...
863s Setting up r-cran-permute (0.9-7-1) ...
863s Setting up r-cran-fs (1.6.5+dfsg-1) ...
863s Setting up r-cran-rcpp (1.0.14-1) ...
863s Setting up r-cran-brio (1.1.5-1) ...
863s Setting up r-cran-boot (1.3-31-1) ...
863s Setting up r-cran-diffobj (0.3.5-1) ...
863s Setting up r-cran-rlang (1.1.5-1) ...
863s Setting up littler (0.3.20-2) ...
863s Setting up r-cran-withr (3.0.2+dfsg-1) ...
863s Setting up r-cran-processx (3.8.5-1) ...
863s Setting up r-cran-mime (0.12-2) ...
863s Setting up r-cran-praise (1.0.0-4build1) ...
863s Setting up r-cran-generics (0.1.3-1) ...
863s Setting up r-cran-base64enc (0.1-3-3) ...
863s Setting up r-cran-digest (0.6.37-1) ...
863s Setting up r-cran-ape (5.8-1-1) ...
863s Setting up r-cran-evaluate (1.0.3-1) ...
863s Setting up r-cran-fansi (1.0.5-1) ...
863s Setting up r-cran-mass (7.3-64-1) ...
863s Setting up r-cran-glue (1.8.0-1) ...
863s Setting up r-cran-xtable (1:1.8-4-2) ...
863s Setting up r-cran-cli (3.6.3-1) ...
863s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
863s Setting up r-cran-rprojroot (2.0.4-2) ...
863s Setting up r-cran-fastmap (1.2.0-1) ...
863s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
863s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
863s Setting up r-cran-sp (1:2.1-4+dfsg-1) ...
863s Setting up r-cran-utf8 (1.2.4-1) ...
863s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
863s Setting up r-cran-stringi (1.8.4-1build1) ...
863s Setting up r-cran-cpp11 (0.5.1-1) ...
863s Setting up r-cran-segmented (2.1-3-1) ...
863s Setting up r-cran-plyr (1.8.9-1) ...
863s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
863s Setting up r-cran-isoband (0.2.7-1) ...
863s Setting up r-cran-waldo (0.6.1-1) ...
863s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
863s Setting up r-cran-later (1.4.1+dfsg-1) ...
863s Setting up r-cran-matrix (1.7-2-1) ...
863s Setting up r-cran-htmltools (0.5.8.1-1) ...
863s Setting up r-cran-mgcv (1.9-1-1) ...
863s Setting up r-cran-cachem (1.1.0-1) ...
863s Setting up r-cran-sass (0.4.9+dfsg-1) ...
863s Setting up r-cran-rcpparmadillo (14.2.2-1-1) ...
863s Setting up r-cran-vctrs (0.6.5-1) ...
863s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
863s Setting up r-cran-stringr (1.5.1-1) ...
863s Setting up r-cran-callr (3.7.6-1) ...
863s Setting up r-cran-desc (1.4.3-1) ...
863s Setting up r-cran-munsell (0.5.1-1) ...
863s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
863s Setting up r-cran-fontawesome (0.5.3-1) ...
863s Setting up r-cran-igraph (2.1.4-1) ...
863s Setting up r-cran-ade4 (1.7-22-1) ...
863s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
863s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
863s Setting up r-cran-reshape2 (1.4.4-2build1) ...
863s Setting up r-cran-scales (1.3.0-1) ...
863s Setting up r-cran-memoise (2.0.1-1) ...
863s Setting up r-cran-promises (1.3.2+dfsg-1) ...
863s Setting up r-cran-vegan (2.6-8+dfsg-1) ...
863s Setting up r-cran-pkgbuild (1.4.6-1) ...
863s Setting up r-cran-dplyr (1.1.4-4) ...
863s Setting up r-cran-pkgload (1.4.0-1) ...
863s Setting up r-cran-seqinr (4.2-36-1) ...
863s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
863s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
863s Setting up r-cran-testthat (3.2.3-1) ...
863s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
863s Setting up r-cran-shiny (1.9.1+dfsg-1) ...
863s Setting up r-cran-adegenet (2.1.10-1) ...
863s Processing triggers for libc-bin (2.40-4ubuntu1) ...
863s Processing triggers for man-db (2.13.0-1) ...
865s Processing triggers for install-info (7.1.1-1) ...
866s autopkgtest [17:29:19]: test run-unit-test: [-----------------------
866s 
866s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
866s Copyright (C) 2024 The R Foundation for Statistical Computing
866s Platform: aarch64-unknown-linux-gnu
866s 
866s R is free software and comes with ABSOLUTELY NO WARRANTY.
866s You are welcome to redistribute it under certain conditions.
866s Type 'license()' or 'licence()' for distribution details.
866s 
866s R is a collaborative project with many contributors.
866s Type 'contributors()' for more information and
866s 'citation()' on how to cite R or R packages in publications.
866s 
866s Type 'demo()' for some demos, 'help()' for on-line help, or
866s 'help.start()' for an HTML browser interface to help.
866s Type 'q()' to quit R.
866s 
866s > library(testthat)
867s > suppressPackageStartupMessages(library(adegenet))
869s > test_check("adegenet")
869s 
869s  Converting data from a genind to a genpop object... 
869s 
869s ...done.
869s 
870s [ FAIL 0 | WARN 0 | SKIP 39 | PASS 13 ]
870s 
870s == Skipped tests (39) ==========================================================
870s * On CRAN (39): 'test-findclust.R:4:3', 'test-prop.R:13:3',
870s   'test-seppop.R:6:3', 'test-seppop.R:14:3', 'test-seppop.R:23:3',
870s   'test-seppop.R:33:3', 'test-seppop.R:56:3', 'test-seppop.R:65:3',
870s   'test-seppop.R:75:3', 'test_compoplot.R:6:3', 'test_compoplot.R:11:3',
870s   'test_compoplot.R:16:3', 'test_compoplot.R:21:3', 'test_compoplot.R:26:3',
870s   'test_constructors.R:4:3', 'test_constructors.R:11:3', 'test_genlight.R:5:3',
870s   'test_genlight.R:18:3', 'test_genlight.R:35:3', 'test_genlight.R:42:3',
870s   'test_genlight.R:68:3', 'test_genlight.R:79:3', 'test_genlight.R:90:3',
870s   'test_genlight.R:96:3', 'test_genlight.R:104:3', 'test_hierarchy.R:4:3',
870s   'test_hierarchy.R:27:3', 'test_hierarchy.R:38:3', 'test_repool.R:7:3',
870s   'test_snapclust.R:5:5', 'test_snapclust.R:31:5', 'test_snapclust.R:65:3',
870s   'test_snapclust.R:78:3', 'test_snapclust.R:88:3', 'test_subset.R:6:3',
870s   'test_subset.R:14:3', 'test_summary.R:4:3', 'test_xval.R:15:3',
870s   'test_xval.R:26:3'
870s 
870s [ FAIL 0 | WARN 0 | SKIP 39 | PASS 13 ]
871s > 
871s autopkgtest [17:29:24]: test run-unit-test: -----------------------]
872s autopkgtest [17:29:25]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
872s run-unit-test        PASS
873s autopkgtest [17:29:26]: test pkg-r-autopkgtest: preparing testbed
873s Reading package lists...
873s Building dependency tree...
873s Reading state information...
874s Starting pkgProblemResolver with broken count: 0
874s Starting 2 pkgProblemResolver with broken count: 0
874s Done
875s The following NEW packages will be installed:
875s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
875s   dctrl-tools g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
875s   gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gdal-data gdal-plugins
875s   gfortran gfortran-14 gfortran-14-aarch64-linux-gnu
875s   gfortran-aarch64-linux-gnu icu-devtools libabsl20230802 libaec0 libaom3
875s   libarmadillo14 libarpack2t64 libasan8 libavif16 libblas-dev libblosc1
875s   libbz2-dev libcc1-0 libcfitsio10t64 libdav1d7 libde265-0 libdeflate-dev
875s   libfreexl1 libfyba0t64 libgav1-1 libgcc-14-dev libgdal36 libgeos-c1t64
875s   libgeos3.13.0 libgeotiff5 libgfortran-14-dev libgif7 libgpgmepp6t64
875s   libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec
875s   libheif-plugin-libde265 libheif1 libhwasan0 libicu-dev libisl23 libitm1
875s   libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libkmlbase1t64 libkmldom1t64
875s   libkmlengine1t64 liblapack-dev liblcms2-2 liblsan0 liblzma-dev
875s   libminizip1t64 libmpc3 libmysqlclient24 libncurses-dev libnetcdf19t64
875s   libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpcre2-16-0 libpcre2-32-0
875s   libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libpoppler145 libpq5
875s   libproj25 libqhull-r8.0 librav1e0.7 libreadline-dev librttopo1 libsnappy1v5
875s   libspatialite8t64 libstdc++-14-dev libsvtav1enc2 libsz2 libtirpc-dev
875s   libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1
875s   libxerces-c3.2t64 libyuv0 mysql-common pkg-r-autopkgtest pkgconf pkgconf-bin
875s   proj-data r-base-dev r-cran-class r-cran-classint r-cran-dbi r-cran-deldir
875s   r-cran-e1071 r-cran-interp r-cran-kernsmooth r-cran-maps r-cran-proxy
875s   r-cran-rcppeigen r-cran-s2 r-cran-sf r-cran-spdata r-cran-spdep r-cran-units
875s   r-cran-wk unixodbc-common zlib1g-dev
875s 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded.
875s Need to get 149 MB of archives.
875s After this operation, 502 MB of additional disk space will be used.
875s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
876s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
876s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [10.6 MB]
877s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-13ubuntu1 [1030 B]
877s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
877s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
877s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-13ubuntu1 [49.6 kB]
877s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-13ubuntu1 [27.8 kB]
877s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-13ubuntu1 [2893 kB]
877s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-13ubuntu1 [1283 kB]
877s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-13ubuntu1 [2686 kB]
878s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-13ubuntu1 [1152 kB]
878s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-13ubuntu1 [1598 kB]
878s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-13ubuntu1 [2596 kB]
878s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [20.9 MB]
960s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-13ubuntu1 [523 kB]
961s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
961s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
961s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-13ubuntu1 [2502 kB]
978s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [12.1 MB]
1070s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-13ubuntu1 [21.1 kB]
1070s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
1070s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
1070s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
1070s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
1071s Get:26 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-data all 3.10.1+dfsg-1build2 [269 kB]
1073s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 gdal-plugins arm64 3.10.1+dfsg-1build2 [25.6 kB]
1073s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-13ubuntu1 [498 kB]
1077s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-13ubuntu1 [11.4 MB]
1155s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-13ubuntu1 [13.2 kB]
1155s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B]
1155s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B]
1155s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
1155s Ign:33 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2
1155s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libabsl20230802 arm64 20230802.1-4ubuntu2 [487 kB]
1159s Get:35 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
1159s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.11.0-1 [1837 kB]
1173s Get:37 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarpack2t64 arm64 3.9.1-4 [94.4 kB]
1174s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 libarmadillo14 arm64 1:14.2.1+dfsg-1 [104 kB]
1175s Get:39 http://ftpmaster.internal/ubuntu plucky/universe arm64 libdav1d7 arm64 1.5.1-1 [304 kB]
1177s Get:40 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgav1-1 arm64 0.19.0-3 [572 kB]
1182s Get:41 http://ftpmaster.internal/ubuntu plucky/universe arm64 librav1e0.7 arm64 0.7.1-9 [763 kB]
1190s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1832 kB]
1202s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libyuv0 arm64 0.0.1899.20250103-1 [158 kB]
1203s Get:44 http://ftpmaster.internal/ubuntu plucky/universe arm64 libavif16 arm64 1.1.1-1ubuntu1 [94.6 kB]
1204s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-4 [120 kB]
1205s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB]
1205s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB]
1205s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
1205s Get:49 http://ftpmaster.internal/ubuntu plucky/universe arm64 libcfitsio10t64 arm64 4.5.0-5 [519 kB]
1209s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build4 [146 kB]
1210s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
1211s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfyba0t64 arm64 4.1.1-11build1 [120 kB]
1213s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libminizip1t64 arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [23.1 kB]
1213s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 libfreexl1 arm64 2.0.0-1build2 [41.9 kB]
1213s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos3.13.0 arm64 3.13.0-1 [918 kB]
1222s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeos-c1t64 arm64 3.13.0-1 [92.6 kB]
1222s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 proj-data all 9.5.1-1 [7924 kB]
1275s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 libproj25 arm64 9.5.1-1 [1342 kB]
1289s Get:59 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgeotiff5 arm64 1.7.3-1 [60.8 kB]
1290s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgif7 arm64 5.2.2-1ubuntu1 [35.5 kB]
1290s Get:61 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
1290s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf4-0-alt arm64 4.3.0-1 [271 kB]
1291s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB]
1304s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.19.5-1build1 [11.4 kB]
1304s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.19.5-1build1 [8902 B]
1304s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.19.5-1build1 [369 kB]
1310s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 liburiparser1 arm64 0.9.8+dfsg-2 [36.3 kB]
1311s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlbase1t64 arm64 1.3.0-12build1 [47.8 kB]
1311s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmldom1t64 arm64 1.3.0-12build1 [146 kB]
1312s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libkmlengine1t64 arm64 1.3.0-12build1 [68.1 kB]
1313s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 mysql-common all 5.8+1.1.1 [6800 B]
1313s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libmysqlclient24 arm64 8.4.4-0ubuntu1 [1243 kB]
1322s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB]
1323s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libnetcdf19t64 arm64 1:4.9.2-6ubuntu2 [471 kB]
1325s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbc2 arm64 2.3.12-2ubuntu1 [147 kB]
1326s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B]
1327s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libodbcinst2 arm64 2.3.12-2ubuntu1 [30.3 kB]
1327s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libogdi4.1 arm64 4.1.1+ds-5 [217 kB]
1328s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.0-2ubuntu3 [182 kB]
1329s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libgpgmepp6t64 arm64 1.24.1-2ubuntu1 [119 kB]
1330s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB]
1331s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libpoppler145 arm64 25.01.0-2 [1139 kB]
1346s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libpq5 arm64 17.2-1build2 [141 kB]
1349s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB]
1350s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 librttopo1 arm64 1.1.0-3build2 [187 kB]
1351s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libspatialite8t64 arm64 5.1.0-3build1 [1814 kB]
1359s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3build1 [874 kB]
1365s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libgdal36 arm64 3.10.1+dfsg-1build2 [8895 kB]
1427s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
1512s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
1515s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
1515s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
1515s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-4 [4419 kB]
1541s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB]
1545s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB]
1547s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB]
1549s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B]
1549s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB]
1555s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
1555s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
1562s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-3 [270 kB]
1567s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
1569s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-data all 2.2.28-7build1 [19.4 kB]
1569s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libudunits2-0 arm64 2.2.28-7build1 [52.8 kB]
1569s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.3-1 [180 kB]
1571s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
1571s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
1571s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
1573s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.2-1build1 [4342 B]
1573s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
1573s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-class arm64 7.3-23-1 [90.5 kB]
1573s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-proxy arm64 0.4-27-1 [181 kB]
1576s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-e1071 arm64 1.7-16-1 [563 kB]
1580s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-kernsmooth arm64 2.23-26-1 [93.3 kB]
1581s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-classint arm64 0.4-11+dfsg-1 [108 kB]
1582s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB]
1588s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB]
1590s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB]
1598s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB]
1612s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-maps arm64 3.4.2-1 [2362 kB]
1633s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-wk arm64 0.9.4-1 [1790 kB]
1647s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-s2 arm64 1.1.7-1 [1987 kB]
1659s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-units arm64 0.8-5+dfsg-1 [270 kB]
1661s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sf arm64 1.0-19+dfsg-1 [3247 kB]
1686s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spdata all 2.3.1-1 [3757 kB]
1711s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-spdep arm64 1.3-5+dfsg-1 [2168 kB]
1729s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
1731s Fetched 149 MB in 14min 15s (174 kB/s)
1731s Selecting previously unselected package libisl23:arm64.
1731s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
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(Reading database ... 90%
(Reading database ... 95%
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(Reading database ... 130834 files and directories currently installed.)
1731s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
1731s Unpacking libisl23:arm64 (0.27-1) ...
1731s Selecting previously unselected package libmpc3:arm64.
1731s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
1731s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
1731s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
1731s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1731s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package cpp-14.
1732s Preparing to unpack .../003-cpp-14_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking cpp-14 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package cpp-aarch64-linux-gnu.
1732s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1732s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1732s Selecting previously unselected package cpp.
1732s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
1732s Unpacking cpp (4:14.1.0-2ubuntu1) ...
1732s Selecting previously unselected package libcc1-0:arm64.
1732s Preparing to unpack .../006-libcc1-0_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libcc1-0:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package libitm1:arm64.
1732s Preparing to unpack .../007-libitm1_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libitm1:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package libasan8:arm64.
1732s Preparing to unpack .../008-libasan8_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libasan8:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package liblsan0:arm64.
1732s Preparing to unpack .../009-liblsan0_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking liblsan0:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package libtsan2:arm64.
1732s Preparing to unpack .../010-libtsan2_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libtsan2:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package libubsan1:arm64.
1732s Preparing to unpack .../011-libubsan1_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libubsan1:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package libhwasan0:arm64.
1732s Preparing to unpack .../012-libhwasan0_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libhwasan0:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package libgcc-14-dev:arm64.
1732s Preparing to unpack .../013-libgcc-14-dev_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking libgcc-14-dev:arm64 (14.2.0-13ubuntu1) ...
1732s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
1732s Preparing to unpack .../014-gcc-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1732s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1733s Selecting previously unselected package gcc-14.
1733s Preparing to unpack .../015-gcc-14_14.2.0-13ubuntu1_arm64.deb ...
1733s Unpacking gcc-14 (14.2.0-13ubuntu1) ...
1733s Selecting previously unselected package gcc-aarch64-linux-gnu.
1733s Preparing to unpack .../016-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1733s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1733s Selecting previously unselected package gcc.
1733s Preparing to unpack .../017-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ...
1733s Unpacking gcc (4:14.1.0-2ubuntu1) ...
1733s Selecting previously unselected package libstdc++-14-dev:arm64.
1733s Preparing to unpack .../018-libstdc++-14-dev_14.2.0-13ubuntu1_arm64.deb ...
1733s Unpacking libstdc++-14-dev:arm64 (14.2.0-13ubuntu1) ...
1733s Selecting previously unselected package g++-14-aarch64-linux-gnu.
1733s Preparing to unpack .../019-g++-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1733s Unpacking g++-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1733s Selecting previously unselected package g++-14.
1733s Preparing to unpack .../020-g++-14_14.2.0-13ubuntu1_arm64.deb ...
1733s Unpacking g++-14 (14.2.0-13ubuntu1) ...
1733s Selecting previously unselected package g++-aarch64-linux-gnu.
1733s Preparing to unpack .../021-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1733s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1733s Selecting previously unselected package g++.
1733s Preparing to unpack .../022-g++_4%3a14.1.0-2ubuntu1_arm64.deb ...
1733s Unpacking g++ (4:14.1.0-2ubuntu1) ...
1733s Selecting previously unselected package build-essential.
1733s Preparing to unpack .../023-build-essential_12.10ubuntu1_arm64.deb ...
1733s Unpacking build-essential (12.10ubuntu1) ...
1733s Selecting previously unselected package dctrl-tools.
1733s Preparing to unpack .../024-dctrl-tools_2.24-3build3_arm64.deb ...
1733s Unpacking dctrl-tools (2.24-3build3) ...
1733s Selecting previously unselected package gdal-data.
1733s Preparing to unpack .../025-gdal-data_3.10.1+dfsg-1build2_all.deb ...
1733s Unpacking gdal-data (3.10.1+dfsg-1build2) ...
1734s Selecting previously unselected package gdal-plugins:arm64.
1734s Preparing to unpack .../026-gdal-plugins_3.10.1+dfsg-1build2_arm64.deb ...
1734s Unpacking gdal-plugins:arm64 (3.10.1+dfsg-1build2) ...
1734s Selecting previously unselected package libgfortran-14-dev:arm64.
1734s Preparing to unpack .../027-libgfortran-14-dev_14.2.0-13ubuntu1_arm64.deb ...
1734s Unpacking libgfortran-14-dev:arm64 (14.2.0-13ubuntu1) ...
1734s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
1734s Preparing to unpack .../028-gfortran-14-aarch64-linux-gnu_14.2.0-13ubuntu1_arm64.deb ...
1734s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1734s Selecting previously unselected package gfortran-14.
1734s Preparing to unpack .../029-gfortran-14_14.2.0-13ubuntu1_arm64.deb ...
1734s Unpacking gfortran-14 (14.2.0-13ubuntu1) ...
1734s Selecting previously unselected package gfortran-aarch64-linux-gnu.
1734s Preparing to unpack .../030-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
1734s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1734s Selecting previously unselected package gfortran.
1734s Preparing to unpack .../031-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ...
1734s Unpacking gfortran (4:14.1.0-2ubuntu1) ...
1734s Selecting previously unselected package icu-devtools.
1734s Preparing to unpack .../032-icu-devtools_76.1-1ubuntu2_arm64.deb ...
1734s Unpacking icu-devtools (76.1-1ubuntu2) ...
1734s Selecting previously unselected package libabsl20230802:arm64.
1734s Preparing to unpack .../033-libabsl20230802_20230802.1-4ubuntu2_arm64.deb ...
1734s Unpacking libabsl20230802:arm64 (20230802.1-4ubuntu2) ...
1734s Selecting previously unselected package libaec0:arm64.
1734s Preparing to unpack .../034-libaec0_1.1.3-1_arm64.deb ...
1734s Unpacking libaec0:arm64 (1.1.3-1) ...
1734s Selecting previously unselected package libaom3:arm64.
1734s Preparing to unpack .../035-libaom3_3.11.0-1_arm64.deb ...
1734s Unpacking libaom3:arm64 (3.11.0-1) ...
1735s Selecting previously unselected package libarpack2t64:arm64.
1735s Preparing to unpack .../036-libarpack2t64_3.9.1-4_arm64.deb ...
1735s Unpacking libarpack2t64:arm64 (3.9.1-4) ...
1735s Selecting previously unselected package libarmadillo14.
1735s Preparing to unpack .../037-libarmadillo14_1%3a14.2.1+dfsg-1_arm64.deb ...
1735s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ...
1735s Selecting previously unselected package libdav1d7:arm64.
1735s Preparing to unpack .../038-libdav1d7_1.5.1-1_arm64.deb ...
1735s Unpacking libdav1d7:arm64 (1.5.1-1) ...
1735s Selecting previously unselected package libgav1-1:arm64.
1735s Preparing to unpack .../039-libgav1-1_0.19.0-3_arm64.deb ...
1735s Unpacking libgav1-1:arm64 (0.19.0-3) ...
1735s Selecting previously unselected package librav1e0.7:arm64.
1735s Preparing to unpack .../040-librav1e0.7_0.7.1-9_arm64.deb ...
1735s Unpacking librav1e0.7:arm64 (0.7.1-9) ...
1735s Selecting previously unselected package libsvtav1enc2:arm64.
1735s Preparing to unpack .../041-libsvtav1enc2_2.3.0+dfsg-1_arm64.deb ...
1735s Unpacking libsvtav1enc2:arm64 (2.3.0+dfsg-1) ...
1735s Selecting previously unselected package libyuv0:arm64.
1735s Preparing to unpack .../042-libyuv0_0.0.1899.20250103-1_arm64.deb ...
1735s Unpacking libyuv0:arm64 (0.0.1899.20250103-1) ...
1735s Selecting previously unselected package libavif16:arm64.
1735s Preparing to unpack .../043-libavif16_1.1.1-1ubuntu1_arm64.deb ...
1735s Unpacking libavif16:arm64 (1.1.1-1ubuntu1) ...
1735s Selecting previously unselected package libblas-dev:arm64.
1735s Preparing to unpack .../044-libblas-dev_3.12.0-4_arm64.deb ...
1735s Unpacking libblas-dev:arm64 (3.12.0-4) ...
1735s Selecting previously unselected package libsnappy1v5:arm64.
1735s Preparing to unpack .../045-libsnappy1v5_1.2.1-1_arm64.deb ...
1735s Unpacking libsnappy1v5:arm64 (1.2.1-1) ...
1735s Selecting previously unselected package libblosc1:arm64.
1735s Preparing to unpack .../046-libblosc1_1.21.5+ds-1build1_arm64.deb ...
1735s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ...
1735s Selecting previously unselected package libbz2-dev:arm64.
1735s Preparing to unpack .../047-libbz2-dev_1.0.8-6_arm64.deb ...
1735s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
1735s Selecting previously unselected package libcfitsio10t64:arm64.
1735s Preparing to unpack .../048-libcfitsio10t64_4.5.0-5_arm64.deb ...
1735s Unpacking libcfitsio10t64:arm64 (4.5.0-5) ...
1735s Selecting previously unselected package libde265-0:arm64.
1735s Preparing to unpack .../049-libde265-0_1.0.15-1build4_arm64.deb ...
1735s Unpacking libde265-0:arm64 (1.0.15-1build4) ...
1735s Selecting previously unselected package libdeflate-dev:arm64.
1736s Preparing to unpack .../050-libdeflate-dev_1.23-1_arm64.deb ...
1736s Unpacking libdeflate-dev:arm64 (1.23-1) ...
1736s Selecting previously unselected package libfyba0t64:arm64.
1736s Preparing to unpack .../051-libfyba0t64_4.1.1-11build1_arm64.deb ...
1736s Unpacking libfyba0t64:arm64 (4.1.1-11build1) ...
1736s Selecting previously unselected package libminizip1t64:arm64.
1736s Preparing to unpack .../052-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
1736s Unpacking libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1736s Selecting previously unselected package libfreexl1:arm64.
1736s Preparing to unpack .../053-libfreexl1_2.0.0-1build2_arm64.deb ...
1736s Unpacking libfreexl1:arm64 (2.0.0-1build2) ...
1736s Selecting previously unselected package libgeos3.13.0:arm64.
1736s Preparing to unpack .../054-libgeos3.13.0_3.13.0-1_arm64.deb ...
1736s Unpacking libgeos3.13.0:arm64 (3.13.0-1) ...
1736s Selecting previously unselected package libgeos-c1t64:arm64.
1736s Preparing to unpack .../055-libgeos-c1t64_3.13.0-1_arm64.deb ...
1736s Unpacking libgeos-c1t64:arm64 (3.13.0-1) ...
1736s Selecting previously unselected package proj-data.
1736s Preparing to unpack .../056-proj-data_9.5.1-1_all.deb ...
1736s Unpacking proj-data (9.5.1-1) ...
1736s Selecting previously unselected package libproj25:arm64.
1736s Preparing to unpack .../057-libproj25_9.5.1-1_arm64.deb ...
1736s Unpacking libproj25:arm64 (9.5.1-1) ...
1736s Selecting previously unselected package libgeotiff5:arm64.
1736s Preparing to unpack .../058-libgeotiff5_1.7.3-1_arm64.deb ...
1736s Unpacking libgeotiff5:arm64 (1.7.3-1) ...
1736s Selecting previously unselected package libgif7:arm64.
1736s Preparing to unpack .../059-libgif7_5.2.2-1ubuntu1_arm64.deb ...
1736s Unpacking libgif7:arm64 (5.2.2-1ubuntu1) ...
1736s Selecting previously unselected package libsz2:arm64.
1736s Preparing to unpack .../060-libsz2_1.1.3-1_arm64.deb ...
1736s Unpacking libsz2:arm64 (1.1.3-1) ...
1736s Selecting previously unselected package libhdf4-0-alt:arm64.
1736s Preparing to unpack .../061-libhdf4-0-alt_4.3.0-1_arm64.deb ...
1736s Unpacking libhdf4-0-alt:arm64 (4.3.0-1) ...
1736s Selecting previously unselected package libhdf5-310:arm64.
1736s Preparing to unpack .../062-libhdf5-310_1.14.5+repack-3_arm64.deb ...
1736s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ...
1736s Selecting previously unselected package libheif-plugin-aomdec:arm64.
1736s Preparing to unpack .../063-libheif-plugin-aomdec_1.19.5-1build1_arm64.deb ...
1736s Unpacking libheif-plugin-aomdec:arm64 (1.19.5-1build1) ...
1736s Selecting previously unselected package libheif-plugin-libde265:arm64.
1737s Preparing to unpack .../064-libheif-plugin-libde265_1.19.5-1build1_arm64.deb ...
1737s Unpacking libheif-plugin-libde265:arm64 (1.19.5-1build1) ...
1737s Selecting previously unselected package libheif1:arm64.
1737s Preparing to unpack .../065-libheif1_1.19.5-1build1_arm64.deb ...
1737s Unpacking libheif1:arm64 (1.19.5-1build1) ...
1737s Selecting previously unselected package liburiparser1:arm64.
1737s Preparing to unpack .../066-liburiparser1_0.9.8+dfsg-2_arm64.deb ...
1737s Unpacking liburiparser1:arm64 (0.9.8+dfsg-2) ...
1737s Selecting previously unselected package libkmlbase1t64:arm64.
1737s Preparing to unpack .../067-libkmlbase1t64_1.3.0-12build1_arm64.deb ...
1737s Unpacking libkmlbase1t64:arm64 (1.3.0-12build1) ...
1737s Selecting previously unselected package libkmldom1t64:arm64.
1737s Preparing to unpack .../068-libkmldom1t64_1.3.0-12build1_arm64.deb ...
1737s Unpacking libkmldom1t64:arm64 (1.3.0-12build1) ...
1737s Selecting previously unselected package libkmlengine1t64:arm64.
1737s Preparing to unpack .../069-libkmlengine1t64_1.3.0-12build1_arm64.deb ...
1737s Unpacking libkmlengine1t64:arm64 (1.3.0-12build1) ...
1737s Selecting previously unselected package mysql-common.
1737s Preparing to unpack .../070-mysql-common_5.8+1.1.1_all.deb ...
1737s Unpacking mysql-common (5.8+1.1.1) ...
1737s Selecting previously unselected package libmysqlclient24:arm64.
1737s Preparing to unpack .../071-libmysqlclient24_8.4.4-0ubuntu1_arm64.deb ...
1737s Unpacking libmysqlclient24:arm64 (8.4.4-0ubuntu1) ...
1737s Selecting previously unselected package libhdf5-hl-310:arm64.
1737s Preparing to unpack .../072-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ...
1737s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
1737s Selecting previously unselected package libnetcdf19t64:arm64.
1737s Preparing to unpack .../073-libnetcdf19t64_1%3a4.9.2-6ubuntu2_arm64.deb ...
1737s Unpacking libnetcdf19t64:arm64 (1:4.9.2-6ubuntu2) ...
1737s Selecting previously unselected package libodbc2:arm64.
1737s Preparing to unpack .../074-libodbc2_2.3.12-2ubuntu1_arm64.deb ...
1737s Unpacking libodbc2:arm64 (2.3.12-2ubuntu1) ...
1737s Selecting previously unselected package unixodbc-common.
1737s Preparing to unpack .../075-unixodbc-common_2.3.12-2ubuntu1_all.deb ...
1737s Unpacking unixodbc-common (2.3.12-2ubuntu1) ...
1737s Selecting previously unselected package libodbcinst2:arm64.
1737s Preparing to unpack .../076-libodbcinst2_2.3.12-2ubuntu1_arm64.deb ...
1737s Unpacking libodbcinst2:arm64 (2.3.12-2ubuntu1) ...
1737s Selecting previously unselected package libogdi4.1:arm64.
1737s Preparing to unpack .../077-libogdi4.1_4.1.1+ds-5_arm64.deb ...
1737s Unpacking libogdi4.1:arm64 (4.1.1+ds-5) ...
1737s Selecting previously unselected package libopenjp2-7:arm64.
1737s Preparing to unpack .../078-libopenjp2-7_2.5.0-2ubuntu3_arm64.deb ...
1737s Unpacking libopenjp2-7:arm64 (2.5.0-2ubuntu3) ...
1737s Selecting previously unselected package libgpgmepp6t64:arm64.
1737s Preparing to unpack .../079-libgpgmepp6t64_1.24.1-2ubuntu1_arm64.deb ...
1737s Unpacking libgpgmepp6t64:arm64 (1.24.1-2ubuntu1) ...
1737s Selecting previously unselected package liblcms2-2:arm64.
1737s Preparing to unpack .../080-liblcms2-2_2.16-2_arm64.deb ...
1737s Unpacking liblcms2-2:arm64 (2.16-2) ...
1737s Selecting previously unselected package libpoppler145:arm64.
1737s Preparing to unpack .../081-libpoppler145_25.01.0-2_arm64.deb ...
1737s Unpacking libpoppler145:arm64 (25.01.0-2) ...
1737s Selecting previously unselected package libpq5:arm64.
1737s Preparing to unpack .../082-libpq5_17.2-1build2_arm64.deb ...
1737s Unpacking libpq5:arm64 (17.2-1build2) ...
1737s Selecting previously unselected package libqhull-r8.0:arm64.
1737s Preparing to unpack .../083-libqhull-r8.0_2020.2-6build1_arm64.deb ...
1737s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ...
1737s Selecting previously unselected package librttopo1:arm64.
1738s Preparing to unpack .../084-librttopo1_1.1.0-3build2_arm64.deb ...
1738s Unpacking librttopo1:arm64 (1.1.0-3build2) ...
1738s Selecting previously unselected package libspatialite8t64:arm64.
1738s Preparing to unpack .../085-libspatialite8t64_5.1.0-3build1_arm64.deb ...
1738s Unpacking libspatialite8t64:arm64 (5.1.0-3build1) ...
1738s Selecting previously unselected package libxerces-c3.2t64:arm64.
1738s Preparing to unpack .../086-libxerces-c3.2t64_3.2.4+debian-1.3build1_arm64.deb ...
1738s Unpacking libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build1) ...
1738s Selecting previously unselected package libgdal36:arm64.
1738s Preparing to unpack .../087-libgdal36_3.10.1+dfsg-1build2_arm64.deb ...
1738s Unpacking libgdal36:arm64 (3.10.1+dfsg-1build2) ...
1738s Selecting previously unselected package libicu-dev:arm64.
1738s Preparing to unpack .../088-libicu-dev_76.1-1ubuntu2_arm64.deb ...
1738s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
1738s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
1738s Preparing to unpack .../089-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
1738s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
1738s Selecting previously unselected package libjpeg8-dev:arm64.
1738s Preparing to unpack .../090-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
1738s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
1738s Selecting previously unselected package libjpeg-dev:arm64.
1738s Preparing to unpack .../091-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
1738s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
1738s Selecting previously unselected package liblapack-dev:arm64.
1738s Preparing to unpack .../092-liblapack-dev_3.12.0-4_arm64.deb ...
1738s Unpacking liblapack-dev:arm64 (3.12.0-4) ...
1739s Selecting previously unselected package libncurses-dev:arm64.
1739s Preparing to unpack .../093-libncurses-dev_6.5-2_arm64.deb ...
1739s Unpacking libncurses-dev:arm64 (6.5-2) ...
1739s Selecting previously unselected package libpcre2-16-0:arm64.
1739s Preparing to unpack .../094-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ...
1739s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
1739s Selecting previously unselected package libpcre2-32-0:arm64.
1739s Preparing to unpack .../095-libpcre2-32-0_10.42-4ubuntu3_arm64.deb ...
1739s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
1739s Selecting previously unselected package libpcre2-posix3:arm64.
1739s Preparing to unpack .../096-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ...
1739s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
1739s Selecting previously unselected package libpcre2-dev:arm64.
1739s Preparing to unpack .../097-libpcre2-dev_10.42-4ubuntu3_arm64.deb ...
1739s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ...
1739s Selecting previously unselected package libpkgconf3:arm64.
1739s Preparing to unpack .../098-libpkgconf3_1.8.1-4_arm64.deb ...
1739s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
1739s Selecting previously unselected package zlib1g-dev:arm64.
1739s Preparing to unpack .../099-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
1739s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1739s Selecting previously unselected package libpng-dev:arm64.
1739s Preparing to unpack .../100-libpng-dev_1.6.44-3_arm64.deb ...
1739s Unpacking libpng-dev:arm64 (1.6.44-3) ...
1739s Selecting previously unselected package libreadline-dev:arm64.
1739s Preparing to unpack .../101-libreadline-dev_8.2-6_arm64.deb ...
1739s Unpacking libreadline-dev:arm64 (8.2-6) ...
1739s Selecting previously unselected package libudunits2-data.
1739s Preparing to unpack .../102-libudunits2-data_2.2.28-7build1_all.deb ...
1739s Unpacking libudunits2-data (2.2.28-7build1) ...
1739s Selecting previously unselected package libudunits2-0.
1739s Preparing to unpack .../103-libudunits2-0_2.2.28-7build1_arm64.deb ...
1739s Unpacking libudunits2-0 (2.2.28-7build1) ...
1739s Selecting previously unselected package liblzma-dev:arm64.
1739s Preparing to unpack .../104-liblzma-dev_5.6.3-1_arm64.deb ...
1739s Unpacking liblzma-dev:arm64 (5.6.3-1) ...
1739s Selecting previously unselected package pkgconf-bin.
1739s Preparing to unpack .../105-pkgconf-bin_1.8.1-4_arm64.deb ...
1739s Unpacking pkgconf-bin (1.8.1-4) ...
1739s Selecting previously unselected package pkgconf:arm64.
1739s Preparing to unpack .../106-pkgconf_1.8.1-4_arm64.deb ...
1739s Unpacking pkgconf:arm64 (1.8.1-4) ...
1739s Selecting previously unselected package libtirpc-dev:arm64.
1739s Preparing to unpack .../107-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
1739s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
1739s Selecting previously unselected package r-base-dev.
1739s Preparing to unpack .../108-r-base-dev_4.4.2-1build1_all.deb ...
1739s Unpacking r-base-dev (4.4.2-1build1) ...
1739s Selecting previously unselected package pkg-r-autopkgtest.
1739s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
1739s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
1739s Selecting previously unselected package r-cran-class.
1739s Preparing to unpack .../110-r-cran-class_7.3-23-1_arm64.deb ...
1739s Unpacking r-cran-class (7.3-23-1) ...
1739s Selecting previously unselected package r-cran-proxy.
1739s Preparing to unpack .../111-r-cran-proxy_0.4-27-1_arm64.deb ...
1739s Unpacking r-cran-proxy (0.4-27-1) ...
1739s Selecting previously unselected package r-cran-e1071.
1740s Preparing to unpack .../112-r-cran-e1071_1.7-16-1_arm64.deb ...
1740s Unpacking r-cran-e1071 (1.7-16-1) ...
1740s Selecting previously unselected package r-cran-kernsmooth.
1740s Preparing to unpack .../113-r-cran-kernsmooth_2.23-26-1_arm64.deb ...
1740s Unpacking r-cran-kernsmooth (2.23-26-1) ...
1740s Selecting previously unselected package r-cran-classint.
1740s Preparing to unpack .../114-r-cran-classint_0.4-11+dfsg-1_arm64.deb ...
1740s Unpacking r-cran-classint (0.4-11+dfsg-1) ...
1740s Selecting previously unselected package r-cran-dbi.
1740s Preparing to unpack .../115-r-cran-dbi_1.2.3-1_all.deb ...
1740s Unpacking r-cran-dbi (1.2.3-1) ...
1740s Selecting previously unselected package r-cran-deldir.
1740s Preparing to unpack .../116-r-cran-deldir_2.0-4-1build1_arm64.deb ...
1740s Unpacking r-cran-deldir (2.0-4-1build1) ...
1740s Selecting previously unselected package r-cran-rcppeigen.
1740s Preparing to unpack .../117-r-cran-rcppeigen_0.3.4.0.2-1_arm64.deb ...
1740s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
1740s Selecting previously unselected package r-cran-interp.
1740s Preparing to unpack .../118-r-cran-interp_1.1-6-1_arm64.deb ...
1740s Unpacking r-cran-interp (1.1-6-1) ...
1740s Selecting previously unselected package r-cran-maps.
1740s Preparing to unpack .../119-r-cran-maps_3.4.2-1_arm64.deb ...
1740s Unpacking r-cran-maps (3.4.2-1) ...
1740s Selecting previously unselected package r-cran-wk.
1740s Preparing to unpack .../120-r-cran-wk_0.9.4-1_arm64.deb ...
1740s Unpacking r-cran-wk (0.9.4-1) ...
1740s Selecting previously unselected package r-cran-s2.
1740s Preparing to unpack .../121-r-cran-s2_1.1.7-1_arm64.deb ...
1740s Unpacking r-cran-s2 (1.1.7-1) ...
1740s Selecting previously unselected package r-cran-units.
1740s Preparing to unpack .../122-r-cran-units_0.8-5+dfsg-1_arm64.deb ...
1740s Unpacking r-cran-units (0.8-5+dfsg-1) ...
1740s Selecting previously unselected package r-cran-sf.
1740s Preparing to unpack .../123-r-cran-sf_1.0-19+dfsg-1_arm64.deb ...
1740s Unpacking r-cran-sf (1.0-19+dfsg-1) ...
1740s Selecting previously unselected package r-cran-spdata.
1740s Preparing to unpack .../124-r-cran-spdata_2.3.1-1_all.deb ...
1740s Unpacking r-cran-spdata (2.3.1-1) ...
1740s Selecting previously unselected package r-cran-spdep.
1740s Preparing to unpack .../125-r-cran-spdep_1.3-5+dfsg-1_arm64.deb ...
1740s Unpacking r-cran-spdep (1.3-5+dfsg-1) ...
1740s Setting up liblcms2-2:arm64 (2.16-2) ...
1740s Setting up libgpgmepp6t64:arm64 (1.24.1-2ubuntu1) ...
1740s Setting up libaom3:arm64 (3.11.0-1) ...
1740s Setting up mysql-common (5.8+1.1.1) ...
1740s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
1740s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
1740s Setting up r-cran-maps (3.4.2-1) ...
1740s Setting up libncurses-dev:arm64 (6.5-2) ...
1740s Setting up libarpack2t64:arm64 (3.9.1-4) ...
1740s Setting up proj-data (9.5.1-1) ...
1740s Setting up r-cran-class (7.3-23-1) ...
1740s Setting up libproj25:arm64 (9.5.1-1) ...
1740s Setting up libogdi4.1:arm64 (4.1.1+ds-5) ...
1740s Setting up libgeos3.13.0:arm64 (3.13.0-1) ...
1740s Setting up r-cran-dbi (1.2.3-1) ...
1740s Setting up libpq5:arm64 (17.2-1build2) ...
1740s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ...
1740s Setting up libreadline-dev:arm64 (8.2-6) ...
1740s Setting up libxerces-c3.2t64:arm64 (3.2.4+debian-1.3build1) ...
1740s Setting up libmysqlclient24:arm64 (8.4.4-0ubuntu1) ...
1740s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ...
1740s Setting up libaec0:arm64 (1.1.3-1) ...
1740s Setting up gdal-data (3.10.1+dfsg-1build2) ...
1740s Setting up libgeotiff5:arm64 (1.7.3-1) ...
1740s Setting up r-cran-deldir (2.0-4-1build1) ...
1740s Setting up libsnappy1v5:arm64 (1.2.1-1) ...
1740s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ...
1740s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
1740s Setting up libpkgconf3:arm64 (1.8.1-4) ...
1741s Setting up libcfitsio10t64:arm64 (4.5.0-5) ...
1741s Setting up r-cran-spdata (2.3.1-1) ...
1741s Setting up libsvtav1enc2:arm64 (2.3.0+dfsg-1) ...
1741s Setting up libmpc3:arm64 (1.3.1-1build2) ...
1741s Setting up icu-devtools (76.1-1ubuntu2) ...
1741s Setting up unixodbc-common (2.3.12-2ubuntu1) ...
1741s Setting up pkgconf-bin (1.8.1-4) ...
1741s Setting up r-cran-kernsmooth (2.23-26-1) ...
1741s Setting up liblzma-dev:arm64 (5.6.3-1) ...
1741s Setting up libubsan1:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up libgif7:arm64 (5.2.2-1ubuntu1) ...
1741s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1741s Setting up libodbc2:arm64 (2.3.12-2ubuntu1) ...
1741s Setting up liburiparser1:arm64 (0.9.8+dfsg-2) ...
1741s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ...
1741s Setting up libfyba0t64:arm64 (4.1.1-11build1) ...
1741s Setting up libudunits2-data (2.2.28-7build1) ...
1741s Setting up libdav1d7:arm64 (1.5.1-1) ...
1741s Setting up libminizip1t64:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1741s Setting up libhwasan0:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up librav1e0.7:arm64 (0.7.1-9) ...
1741s Setting up libasan8:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up libblosc1:arm64 (1.21.5+ds-1build1) ...
1741s Setting up libopenjp2-7:arm64 (2.5.0-2ubuntu3) ...
1741s Setting up libabsl20230802:arm64 (20230802.1-4ubuntu2) ...
1741s Setting up libarmadillo14 (1:14.2.1+dfsg-1) ...
1741s Setting up r-cran-wk (0.9.4-1) ...
1741s Setting up libtsan2:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up r-cran-proxy (0.4-27-1) ...
1741s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
1741s Setting up libisl23:arm64 (0.27-1) ...
1741s Setting up libde265-0:arm64 (1.0.15-1build4) ...
1741s Setting up libkmlbase1t64:arm64 (1.3.0-12build1) ...
1741s Setting up libdeflate-dev:arm64 (1.23-1) ...
1741s Setting up libyuv0:arm64 (0.0.1899.20250103-1) ...
1741s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
1741s Setting up libcc1-0:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up liblsan0:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up libblas-dev:arm64 (3.12.0-4) ...
1741s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
1741s Setting up libsz2:arm64 (1.1.3-1) ...
1741s Setting up dctrl-tools (2.24-3build3) ...
1741s Setting up libitm1:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
1741s Setting up gdal-plugins:arm64 (3.10.1+dfsg-1build2) ...
1741s Setting up libbz2-dev:arm64 (1.0.8-6) ...
1741s Setting up libpoppler145:arm64 (25.01.0-2) ...
1741s Setting up libodbcinst2:arm64 (2.3.12-2ubuntu1) ...
1741s Setting up libudunits2-0 (2.2.28-7build1) ...
1741s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ...
1741s Setting up libgeos-c1t64:arm64 (3.13.0-1) ...
1741s Setting up r-cran-s2 (1.1.7-1) ...
1741s Setting up libpng-dev:arm64 (1.6.44-3) ...
1741s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
1741s Setting up pkgconf:arm64 (1.8.1-4) ...
1741s Setting up libkmldom1t64:arm64 (1.3.0-12build1) ...
1741s Setting up r-cran-interp (1.1-6-1) ...
1741s Setting up liblapack-dev:arm64 (3.12.0-4) ...
1741s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
1741s Setting up r-cran-e1071 (1.7-16-1) ...
1741s Setting up libgav1-1:arm64 (0.19.0-3) ...
1741s Setting up r-cran-units (0.8-5+dfsg-1) ...
1741s Setting up libhdf4-0-alt:arm64 (4.3.0-1) ...
1741s Setting up librttopo1:arm64 (1.1.0-3build2) ...
1741s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ...
1741s Setting up libfreexl1:arm64 (2.0.0-1build2) ...
1741s Setting up cpp-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1741s Setting up libgcc-14-dev:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up libstdc++-14-dev:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up libspatialite8t64:arm64 (5.1.0-3build1) ...
1741s Setting up libgfortran-14-dev:arm64 (14.2.0-13ubuntu1) ...
1741s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ...
1741s Setting up libavif16:arm64 (1.1.1-1ubuntu1) ...
1741s Setting up libnetcdf19t64:arm64 (1:4.9.2-6ubuntu2) ...
1741s Setting up libkmlengine1t64:arm64 (1.3.0-12build1) ...
1741s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1741s Setting up r-cran-classint (0.4-11+dfsg-1) ...
1741s Setting up cpp-14 (14.2.0-13ubuntu1) ...
1741s Setting up cpp (4:14.1.0-2ubuntu1) ...
1741s Setting up gcc-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1741s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1741s Setting up g++-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1741s Setting up gcc-14 (14.2.0-13ubuntu1) ...
1741s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-13ubuntu1) ...
1741s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1741s Setting up gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
1741s Setting up g++-14 (14.2.0-13ubuntu1) ...
1741s Setting up gfortran-14 (14.2.0-13ubuntu1) ...
1741s Setting up gcc (4:14.1.0-2ubuntu1) ...
1741s Setting up g++ (4:14.1.0-2ubuntu1) ...
1741s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1741s Setting up build-essential (12.10ubuntu1) ...
1741s Setting up gfortran (4:14.1.0-2ubuntu1) ...
1741s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
1741s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
1741s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
1741s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
1741s Setting up r-base-dev (4.4.2-1build1) ...
1741s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
1741s Setting up libheif1:arm64 (1.19.5-1build1) ...
1741s Setting up libgdal36:arm64 (3.10.1+dfsg-1build2) ...
1741s Setting up r-cran-sf (1.0-19+dfsg-1) ...
1741s Setting up r-cran-spdep (1.3-5+dfsg-1) ...
1741s Setting up libheif-plugin-aomdec:arm64 (1.19.5-1build1) ...
1741s Setting up libheif-plugin-libde265:arm64 (1.19.5-1build1) ...
1741s Processing triggers for libc-bin (2.40-4ubuntu1) ...
1741s Processing triggers for man-db (2.13.0-1) ...
1742s Processing triggers for install-info (7.1.1-1) ...
1743s autopkgtest [17:43:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
1743s autopkgtest [17:43:56]: test pkg-r-autopkgtest: [-----------------------
1743s Test: Try to load the R library adegenet
1743s 
1743s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
1743s Copyright (C) 2024 The R Foundation for Statistical Computing
1743s Platform: aarch64-unknown-linux-gnu
1743s 
1743s R is free software and comes with ABSOLUTELY NO WARRANTY.
1743s You are welcome to redistribute it under certain conditions.
1743s Type 'license()' or 'licence()' for distribution details.
1743s 
1743s R is a collaborative project with many contributors.
1743s Type 'contributors()' for more information and
1743s 'citation()' on how to cite R or R packages in publications.
1743s 
1743s Type 'demo()' for some demos, 'help()' for on-line help, or
1743s 'help.start()' for an HTML browser interface to help.
1743s Type 'q()' to quit R.
1743s 
1743s > library('adegenet')
1743s Loading required package: ade4
1745s 
1745s    /// adegenet 2.1.10 is loaded ////////////
1745s 
1745s    > overview: '?adegenet'
1745s    > tutorials/doc/questions: 'adegenetWeb()' 
1745s    > bug reports/feature requests: adegenetIssues()
1745s 
1745s 
1745s > 
1745s > 
1745s Other tests are currently unsupported!
1745s They will be progressively added.
1746s autopkgtest [17:43:59]: test pkg-r-autopkgtest: -----------------------]
1746s autopkgtest [17:43:59]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
1746s pkg-r-autopkgtest    PASS
1747s autopkgtest [17:44:00]: @@@@@@@@@@@@@@@@@@@@ summary
1747s run-unit-test        PASS
1747s pkg-r-autopkgtest    PASS
1765s nova [W] Using flock in prodstack6-arm64
1765s Creating nova instance adt-plucky-arm64-r-cran-adegenet-20250203-171453-juju-7f2275-prod-proposed-migration-environment-2-017dd71d-277e-467c-bb96-96e1c265aa39 from image adt/ubuntu-plucky-arm64-server-20250203.img (UUID fb7ca42f-38bc-45ee-b928-9b9fb089de0d)...
1765s nova [W] Timed out waiting for dda60eec-d277-4221-a439-7a3a0218f74b to get deleted.