0s autopkgtest [15:13:00]: starting date and time: 2025-03-15 15:13:00+0000 0s autopkgtest [15:13:00]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:13:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j9avde7e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-11.secgroup --name adt-plucky-arm64-r-bioc-variantannotation-20250315-151300-juju-7f2275-prod-proposed-migration-environment-2-1dc0cdb5-37fc-4e74-9259-550ac4a92e2a --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 136s autopkgtest [15:15:16]: testbed dpkg architecture: arm64 137s autopkgtest [15:15:17]: testbed apt version: 2.9.33 137s autopkgtest [15:15:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 137s autopkgtest [15:15:17]: testbed release detected to be: None 138s autopkgtest [15:15:18]: updating testbed package index (apt update) 138s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 139s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 139s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 139s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 139s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 139s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 139s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 139s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 139s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 139s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 139s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 140s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 140s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 140s Fetched 1094 kB in 1s (823 kB/s) 141s Reading package lists... 141s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Calculating upgrade... 142s Calculating upgrade... 143s The following packages will be upgraded: 143s python3-jinja2 strace 143s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 608 kB of archives. 143s After this operation, 11.3 kB of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 144s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 144s Fetched 608 kB in 1s (698 kB/s) 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 144s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 144s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 144s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 145s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 145s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 145s Setting up strace (6.13+ds-1ubuntu1) ... 145s Processing triggers for man-db (2.13.0-1) ... 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Solving dependencies... 147s The following packages will be REMOVED: 147s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 147s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 147s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 147s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 147s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 147s After this operation, 267 MB disk space will be freed. 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 147s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 147s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 147s Removing libpython3.12t64:arm64 (3.12.9-1) ... 147s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 147s Removing libnsl2:arm64 (1.3.0-3build3) ... 147s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 147s Removing libunwind8:arm64 (1.6.2-3.1) ... 147s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 148s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 150s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 150s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 150s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 150s /etc/kernel/postrm.d/initramfs-tools: 150s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 150s /etc/kernel/postrm.d/zz-flash-kernel: 150s flash-kernel: Kernel 6.11.0-8-generic has been removed. 150s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 150s /etc/kernel/postrm.d/zz-update-grub: 150s Sourcing file `/etc/default/grub' 150s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 150s Generating grub configuration file ... 150s Found linux image: /boot/vmlinuz-6.14.0-10-generic 150s Found initrd image: /boot/initrd.img-6.14.0-10-generic 151s Warning: os-prober will not be executed to detect other bootable partitions. 151s Systems on them will not be added to the GRUB boot configuration. 151s Check GRUB_DISABLE_OS_PROBER documentation entry. 151s Adding boot menu entry for UEFI Firmware Settings ... 151s done 151s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 151s Processing triggers for libc-bin (2.41-1ubuntu1) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 151s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 151s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 151s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 152s autopkgtest [15:15:32]: upgrading testbed (apt dist-upgrade and autopurge) 152s Reading package lists... 152s Building dependency tree... 152s Reading state information... 153s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 153s Starting 2 pkgProblemResolver with broken count: 0 153s Done 153s Entering ResolveByKeep 154s 154s Calculating upgrade... 154s The following packages will be upgraded: 154s libc-bin libc-dev-bin libc6 libc6-dev locales 154s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 154s Need to get 9530 kB of archives. 154s After this operation, 0 B of additional disk space will be used. 154s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 156s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 156s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 159s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 160s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 165s Preconfiguring packages ... 165s Fetched 9530 kB in 10s (946 kB/s) 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 165s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 165s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 165s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 165s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up libc6:arm64 (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 166s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up libc-bin (2.41-1ubuntu2) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 166s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 166s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 166s Setting up locales (2.41-1ubuntu2) ... 167s Generating locales (this might take a while)... 169s en_US.UTF-8... done 169s Generation complete. 169s Setting up libc-dev-bin (2.41-1ubuntu2) ... 169s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 169s Processing triggers for man-db (2.13.0-1) ... 170s Processing triggers for systemd (257.3-1ubuntu3) ... 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 172s Starting pkgProblemResolver with broken count: 0 172s Starting 2 pkgProblemResolver with broken count: 0 172s Done 172s Solving dependencies... 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [15:15:53]: rebooting testbed after setup commands that affected boot 196s autopkgtest [15:16:16]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 199s autopkgtest [15:16:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 203s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-variantannotation 1.52.0-2 (dsc) [2626 B] 203s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-variantannotation 1.52.0-2 (tar) [2146 kB] 203s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-variantannotation 1.52.0-2 (diff) [8296 B] 203s gpgv: Signature made Mon Jan 13 22:34:03 2025 UTC 203s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 203s gpgv: issuer "crusoe@debian.org" 203s gpgv: Can't check signature: No public key 203s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.52.0-2.dsc: no acceptable signature found 203s autopkgtest [15:16:23]: testing package r-bioc-variantannotation version 1.52.0-2 204s autopkgtest [15:16:24]: build not needed 207s autopkgtest [15:16:27]: test pkg-r-autopkgtest: preparing testbed 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s The following NEW packages will be installed: 209s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 209s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 209s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 209s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 209s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 209s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 209s imagemagick-7-common javascript-common libaom3 libasan8 209s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 209s libbz2-dev libcairo2 libcc1-0 libdatrie1 libde265-0 libdeflate-dev 209s libdeflate0 libfftw3-double3 libfontconfig1 libgcc-14-dev libgfortran-14-dev 209s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libheif-plugin-aomdec 209s libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu-dev 209s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 209s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 209s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 209s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 209s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 209s libjs-popper.js libjs-prettify libjs-sifter.js 209s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 209s liblatex-tounicode-perl liblcms2-2 liblerc4 liblqr-1-0 liblsan0 libltdl7 209s liblua5.4-0 liblzma-dev libmagick++-7.q16-5 libmagickcore-7.q16-10 209s libmagickwand-7.q16-10 libmpc3 libmpfi0 libncurses-dev libopenjp2-7 209s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 209s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 209s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libraw23t64 209s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 209s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 209s libtk8.6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxaw7 209s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 209s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 209s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 209s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationhub 209s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 209s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 209s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 209s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 209s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 209s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 209s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 209s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation 209s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 209s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 209s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 209s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 209s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 209s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 209s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 209s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 209s r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv 209s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 209s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 209s r-cran-littler r-cran-magick r-cran-magrittr r-cran-mass r-cran-matrix 209s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell 209s r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten 209s r-cran-plogr r-cran-png r-cran-promises r-cran-purrr r-cran-r6 209s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-restfulr 209s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 209s r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools 209s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 209s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 209s r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable 209s r-cran-yaml t1utils tex-common texlive-base texlive-bibtex-extra 209s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 209s zlib1g-dev 209s 0 upgraded, 301 newly installed, 0 to remove and 0 not upgraded. 209s Need to get 464 MB of archives. 209s After this operation, 1410 MB of additional disk space will be used. 210s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 210s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libfftw3-double3 arm64 3.3.10-2fakesync1build1 [392 kB] 210s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 210s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 211s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 211s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 211s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 211s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libaom3 arm64 3.12.0-1 [1828 kB] 212s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-aomdec arm64 1.19.7-1 [11.4 kB] 212s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libde265-0 arm64 1.0.15-1build5 [146 kB] 212s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif-plugin-libde265 arm64 1.19.7-1 [8890 B] 212s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libheif1 arm64 1.19.7-1 [371 kB] 213s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 213s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 213s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 213s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 213s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblqr-1-0 arm64 0.4.2-2.1build2 [27.1 kB] 213s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 213s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 213s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libraw23t64 arm64 0.21.3-1 [377 kB] 213s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 213s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 213s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 214s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 214s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 214s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 214s Get:27 http://ftpmaster.internal/ubuntu plucky/universe arm64 imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [69.7 kB] 214s Get:28 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmagickcore-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [1876 kB] 215s Get:29 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmagickwand-7.q16-10 arm64 8:7.1.1.43+dfsg1-1 [301 kB] 215s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 215s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 216s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 223s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 223s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 223s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 223s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 223s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 223s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 225s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 225s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 226s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 226s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 226s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 226s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 227s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 227s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 227s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 227s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 228s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 228s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 228s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 228s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 228s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 228s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 228s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 228s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 228s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 228s Get:58 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 229s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 229s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 229s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 229s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 229s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 229s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 229s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 229s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 229s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 229s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 229s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 229s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 229s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 229s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 229s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 230s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 230s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 230s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 230s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 230s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 230s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 230s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 230s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 230s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 230s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 230s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 230s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 230s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 230s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 230s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 230s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 230s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 230s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 230s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 230s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 230s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 230s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 230s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 231s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 231s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 231s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 231s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 231s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 231s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 231s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 231s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 231s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 231s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 231s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 231s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 232s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 232s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmagick++-7.q16-5 arm64 8:7.1.1.43+dfsg1-1 [175 kB] 232s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 232s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 232s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 232s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 232s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 232s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 232s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 232s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 232s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 232s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 232s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 232s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 232s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 232s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 232s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 232s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 232s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 232s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 232s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 232s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 232s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 232s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 232s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 232s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 232s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 232s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 232s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 233s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 233s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 233s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 233s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 233s Get:142 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 233s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 233s Get:144 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 233s Get:145 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 233s Get:146 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 233s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 236s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 236s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 236s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 236s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 236s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 236s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 236s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 237s Get:155 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 237s Get:156 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 237s Get:157 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 237s Get:158 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 237s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 237s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 237s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 237s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 237s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 237s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 238s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 238s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 238s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 238s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 238s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 238s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 238s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 238s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 238s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 238s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 238s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 238s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 238s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 238s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 238s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 238s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 238s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 238s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 238s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 238s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 238s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 238s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 238s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 238s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 238s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 238s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 238s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 238s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 238s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 239s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 239s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 239s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 239s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 239s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 240s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 240s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 240s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 240s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 240s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 240s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 240s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 240s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 240s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 241s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 241s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 241s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 241s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 241s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 241s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 241s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 241s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 241s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 241s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 241s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 241s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 241s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 241s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 241s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 241s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 241s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 241s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 241s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 241s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 241s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 241s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 241s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 241s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 241s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 241s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 241s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 241s Get:235 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 242s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 242s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 242s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 242s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 242s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 243s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 243s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 243s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 243s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 243s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 243s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 243s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 243s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 243s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 243s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 243s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 243s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 243s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 244s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 244s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 244s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 244s Get:257 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 244s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 245s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 248s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 248s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 257s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 257s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 258s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 258s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 258s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 258s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 258s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 258s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 258s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 259s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 260s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 260s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 260s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 260s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 260s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 260s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 261s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 261s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 261s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 261s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 262s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 263s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 263s Get:284 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 264s Get:285 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-snpstats arm64 1.56.0+dfsg-2 [8454 kB] 265s Get:286 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-variantannotation arm64 1.52.0-2 [3592 kB] 265s Get:287 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1563 kB] 265s Get:288 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-farver arm64 2.1.2-1 [1344 kB] 266s Get:289 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 266s Get:290 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 266s Get:291 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 266s Get:292 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-nlme arm64 3.1.167-1 [2311 kB] 266s Get:293 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 267s Get:294 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 267s Get:295 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-munsell all 0.5.1-1 [213 kB] 267s Get:296 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 267s Get:297 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 267s Get:298 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 268s Get:299 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 268s Get:300 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magick arm64 2.8.5+dfsg-1build1 [488 kB] 268s Get:301 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 269s Preconfiguring packages ... 269s Fetched 464 MB in 59s (7887 kB/s) 269s Selecting previously unselected package libgomp1:arm64. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 269s Preparing to unpack .../000-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 269s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 269s Selecting previously unselected package libfftw3-double3:arm64. 269s Preparing to unpack .../001-libfftw3-double3_3.3.10-2fakesync1build1_arm64.deb ... 269s Unpacking libfftw3-double3:arm64 (3.3.10-2fakesync1build1) ... 269s Selecting previously unselected package fonts-dejavu-mono. 269s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ... 269s Unpacking fonts-dejavu-mono (2.37-8) ... 269s Selecting previously unselected package fonts-dejavu-core. 269s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ... 269s Unpacking fonts-dejavu-core (2.37-8) ... 269s Selecting previously unselected package fontconfig-config. 269s Preparing to unpack .../004-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 270s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 270s Selecting previously unselected package libfontconfig1:arm64. 270s Preparing to unpack .../005-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 270s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 270s Selecting previously unselected package libsharpyuv0:arm64. 270s Preparing to unpack .../006-libsharpyuv0_1.5.0-0.1_arm64.deb ... 270s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 270s Selecting previously unselected package libaom3:arm64. 270s Preparing to unpack .../007-libaom3_3.12.0-1_arm64.deb ... 270s Unpacking libaom3:arm64 (3.12.0-1) ... 270s Selecting previously unselected package libheif-plugin-aomdec:arm64. 270s Preparing to unpack .../008-libheif-plugin-aomdec_1.19.7-1_arm64.deb ... 270s Unpacking libheif-plugin-aomdec:arm64 (1.19.7-1) ... 270s Selecting previously unselected package libde265-0:arm64. 270s Preparing to unpack .../009-libde265-0_1.0.15-1build5_arm64.deb ... 270s Unpacking libde265-0:arm64 (1.0.15-1build5) ... 270s Selecting previously unselected package libheif-plugin-libde265:arm64. 270s Preparing to unpack .../010-libheif-plugin-libde265_1.19.7-1_arm64.deb ... 270s Unpacking libheif-plugin-libde265:arm64 (1.19.7-1) ... 270s Selecting previously unselected package libheif1:arm64. 270s Preparing to unpack .../011-libheif1_1.19.7-1_arm64.deb ... 270s Unpacking libheif1:arm64 (1.19.7-1) ... 270s Selecting previously unselected package libjbig0:arm64. 270s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 270s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 270s Selecting previously unselected package libjpeg-turbo8:arm64. 270s Preparing to unpack .../013-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 270s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 270s Selecting previously unselected package libjpeg8:arm64. 270s Preparing to unpack .../014-libjpeg8_8c-2ubuntu11_arm64.deb ... 270s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 270s Selecting previously unselected package liblcms2-2:arm64. 270s Preparing to unpack .../015-liblcms2-2_2.16-2_arm64.deb ... 270s Unpacking liblcms2-2:arm64 (2.16-2) ... 270s Selecting previously unselected package liblqr-1-0:arm64. 270s Preparing to unpack .../016-liblqr-1-0_0.4.2-2.1build2_arm64.deb ... 270s Unpacking liblqr-1-0:arm64 (0.4.2-2.1build2) ... 270s Selecting previously unselected package libltdl7:arm64. 270s Preparing to unpack .../017-libltdl7_2.5.4-4_arm64.deb ... 270s Unpacking libltdl7:arm64 (2.5.4-4) ... 270s Selecting previously unselected package libopenjp2-7:arm64. 270s Preparing to unpack .../018-libopenjp2-7_2.5.3-2_arm64.deb ... 270s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 270s Selecting previously unselected package libraw23t64:arm64. 270s Preparing to unpack .../019-libraw23t64_0.21.3-1_arm64.deb ... 270s Unpacking libraw23t64:arm64 (0.21.3-1) ... 270s Selecting previously unselected package libdeflate0:arm64. 270s Preparing to unpack .../020-libdeflate0_1.23-1_arm64.deb ... 270s Unpacking libdeflate0:arm64 (1.23-1) ... 270s Selecting previously unselected package liblerc4:arm64. 270s Preparing to unpack .../021-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 270s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 270s Selecting previously unselected package libwebp7:arm64. 270s Preparing to unpack .../022-libwebp7_1.5.0-0.1_arm64.deb ... 270s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 270s Selecting previously unselected package libtiff6:arm64. 270s Preparing to unpack .../023-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 270s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 270s Selecting previously unselected package libwebpdemux2:arm64. 270s Preparing to unpack .../024-libwebpdemux2_1.5.0-0.1_arm64.deb ... 270s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 270s Selecting previously unselected package libwebpmux3:arm64. 271s Preparing to unpack .../025-libwebpmux3_1.5.0-0.1_arm64.deb ... 271s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 271s Selecting previously unselected package imagemagick-7-common. 271s Preparing to unpack .../026-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ... 271s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ... 271s Selecting previously unselected package libmagickcore-7.q16-10:arm64. 271s Preparing to unpack .../027-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_arm64.deb ... 271s Unpacking libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... 271s Selecting previously unselected package libmagickwand-7.q16-10:arm64. 271s Preparing to unpack .../028-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_arm64.deb ... 271s Unpacking libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... 271s Selecting previously unselected package libisl23:arm64. 271s Preparing to unpack .../029-libisl23_0.27-1_arm64.deb ... 271s Unpacking libisl23:arm64 (0.27-1) ... 271s Selecting previously unselected package libmpc3:arm64. 271s Preparing to unpack .../030-libmpc3_1.3.1-1build2_arm64.deb ... 271s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 271s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 271s Preparing to unpack .../031-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 271s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 271s Selecting previously unselected package cpp-14. 271s Preparing to unpack .../032-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 271s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 271s Selecting previously unselected package cpp-aarch64-linux-gnu. 271s Preparing to unpack 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.../048-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 272s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 273s Selecting previously unselected package g++-14. 273s Preparing to unpack .../049-g++-14_14.2.0-17ubuntu3_arm64.deb ... 273s Unpacking g++-14 (14.2.0-17ubuntu3) ... 273s Selecting previously unselected package g++-aarch64-linux-gnu. 273s Preparing to unpack .../050-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 273s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 273s Selecting previously unselected package g++. 273s Preparing to unpack .../051-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 273s Unpacking g++ (4:14.2.0-1ubuntu1) ... 273s Selecting previously unselected package build-essential. 273s Preparing to unpack .../052-build-essential_12.10ubuntu1_arm64.deb ... 273s Unpacking build-essential (12.10ubuntu1) ... 273s Selecting previously unselected package dctrl-tools. 273s Preparing to unpack .../053-dctrl-tools_2.24-3build3_arm64.deb ... 273s Unpacking dctrl-tools (2.24-3build3) ... 273s Selecting previously unselected package fontconfig. 273s Preparing to unpack .../054-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 273s Unpacking fontconfig (2.15.0-2ubuntu1) ... 273s Selecting previously unselected package fonts-font-awesome. 273s Preparing to unpack .../055-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 273s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 273s Selecting previously unselected package fonts-glyphicons-halflings. 273s Preparing to unpack .../056-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 273s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 273s Selecting previously unselected package fonts-lmodern. 273s Preparing to unpack .../057-fonts-lmodern_2.005-1_all.deb ... 273s Unpacking fonts-lmodern (2.005-1) ... 273s Selecting previously unselected package fonts-mathjax. 273s Preparing to unpack .../058-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 273s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 273s Selecting previously unselected package libgfortran5:arm64. 273s Preparing to unpack .../059-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 273s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 273s Selecting previously unselected package libgfortran-14-dev:arm64. 273s Preparing to unpack .../060-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 273s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 273s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 273s Preparing to unpack .../061-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 273s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 274s Selecting previously unselected package gfortran-14. 274s Preparing to unpack .../062-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 274s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 274s Selecting previously unselected package gfortran-aarch64-linux-gnu. 274s Preparing to unpack .../063-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 274s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 274s Selecting previously unselected package gfortran. 274s Preparing to unpack .../064-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 274s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 274s Selecting previously unselected package icu-devtools. 274s Preparing to unpack .../065-icu-devtools_76.1-1ubuntu2_arm64.deb ... 274s Unpacking icu-devtools (76.1-1ubuntu2) ... 274s Selecting previously unselected package javascript-common. 274s Preparing to unpack .../066-javascript-common_12_all.deb ... 274s Unpacking javascript-common (12) ... 274s Selecting previously unselected package libio-string-perl. 274s Preparing to unpack .../067-libio-string-perl_1.08-4_all.deb ... 274s Unpacking libio-string-perl (1.08-4) ... 274s Selecting previously unselected package liblatex-tounicode-perl. 274s Preparing to unpack .../068-liblatex-tounicode-perl_0.55-1_all.deb ... 274s Unpacking liblatex-tounicode-perl (0.55-1) ... 274s Selecting previously unselected package libbibtex-parser-perl. 274s Preparing to unpack .../069-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 274s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 274s Selecting previously unselected package libblas3:arm64. 274s Preparing to unpack .../070-libblas3_3.12.1-2_arm64.deb ... 274s Unpacking libblas3:arm64 (3.12.1-2) ... 274s Selecting previously unselected package libblas-dev:arm64. 274s Preparing to unpack .../071-libblas-dev_3.12.1-2_arm64.deb ... 274s Unpacking libblas-dev:arm64 (3.12.1-2) ... 274s Selecting previously unselected package libboost1.83-dev:arm64. 274s Preparing to unpack .../072-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 274s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 276s Selecting previously unselected package libboost-dev:arm64. 276s Preparing to unpack .../073-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 276s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 276s Selecting previously unselected package libbz2-dev:arm64. 276s Preparing to unpack .../074-libbz2-dev_1.0.8-6_arm64.deb ... 276s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 276s Selecting previously unselected package libpixman-1-0:arm64. 276s Preparing to unpack .../075-libpixman-1-0_0.44.0-3_arm64.deb ... 276s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 276s Selecting previously unselected package libxcb-render0:arm64. 276s Preparing to unpack .../076-libxcb-render0_1.17.0-2_arm64.deb ... 276s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 276s Selecting previously unselected package libxcb-shm0:arm64. 276s Preparing to unpack .../077-libxcb-shm0_1.17.0-2_arm64.deb ... 276s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 276s Selecting previously unselected package libxrender1:arm64. 276s Preparing to unpack .../078-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 276s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 276s Selecting previously unselected package libcairo2:arm64. 276s Preparing to unpack .../079-libcairo2_1.18.2-2_arm64.deb ... 276s Unpacking libcairo2:arm64 (1.18.2-2) ... 276s Selecting previously unselected package libdatrie1:arm64. 276s Preparing to unpack .../080-libdatrie1_0.2.13-3build1_arm64.deb ... 276s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 276s Selecting previously unselected package libdeflate-dev:arm64. 276s Preparing to unpack .../081-libdeflate-dev_1.23-1_arm64.deb ... 276s Unpacking libdeflate-dev:arm64 (1.23-1) ... 276s Selecting previously unselected package libgraphite2-3:arm64. 276s Preparing to unpack .../082-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 276s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 276s Selecting previously unselected package libharfbuzz0b:arm64. 276s Preparing to unpack .../083-libharfbuzz0b_10.2.0-1_arm64.deb ... 276s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 276s Selecting previously unselected package x11-common. 276s Preparing to unpack .../084-x11-common_1%3a7.7+23ubuntu3_all.deb ... 276s Unpacking x11-common (1:7.7+23ubuntu3) ... 276s Selecting previously unselected package libice6:arm64. 276s Preparing to unpack .../085-libice6_2%3a1.1.1-1_arm64.deb ... 276s Unpacking libice6:arm64 (2:1.1.1-1) ... 276s Selecting previously unselected package libicu-dev:arm64. 276s Preparing to unpack .../086-libicu-dev_76.1-1ubuntu2_arm64.deb ... 276s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 276s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 277s Preparing to unpack .../087-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 277s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 277s Selecting previously unselected package libjpeg8-dev:arm64. 277s Preparing to unpack .../088-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 277s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 277s Selecting previously unselected package libjpeg-dev:arm64. 277s Preparing to unpack .../089-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 277s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 277s Selecting previously unselected package libjs-bootstrap. 277s Preparing to unpack .../090-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 277s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 277s Selecting previously unselected package libjs-popper.js. 277s Preparing to unpack .../091-libjs-popper.js_1.16.1+ds-6_all.deb ... 277s Unpacking libjs-popper.js (1.16.1+ds-6) ... 277s Selecting previously unselected package libjs-bootstrap4. 277s Preparing to unpack .../092-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 277s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 277s Selecting previously unselected package libjs-d3. 277s Preparing to unpack .../093-libjs-d3_3.5.17-4_all.deb ... 277s Unpacking libjs-d3 (3.5.17-4) ... 277s Selecting previously unselected package libjs-es5-shim. 277s Preparing to unpack .../094-libjs-es5-shim_4.6.7-2_all.deb ... 277s Unpacking libjs-es5-shim (4.6.7-2) ... 277s Selecting previously unselected package libjs-highlight.js. 277s Preparing to unpack .../095-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 277s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 277s Selecting previously unselected package libjs-jquery. 277s Preparing to unpack .../096-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 277s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 277s Selecting previously unselected package libjs-jquery-datatables. 277s Preparing to unpack .../097-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 277s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 277s Selecting previously unselected package libjs-sifter.js. 277s Preparing to unpack .../098-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 277s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 277s Selecting previously unselected package libjs-microplugin.js. 277s Preparing to unpack .../099-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 277s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 277s Selecting previously unselected package libjs-jquery-selectize.js. 277s Preparing to unpack .../100-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 277s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 277s Selecting previously unselected package libjs-jquery-ui. 277s Preparing to unpack .../101-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 277s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 277s Selecting previously unselected package libjs-json. 277s Preparing to unpack .../102-libjs-json_0~20221030+~1.0.8-1_all.deb ... 277s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 277s Selecting previously unselected package libjs-lunr. 277s Preparing to unpack .../103-libjs-lunr_2.3.9~dfsg-2_all.deb ... 277s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 277s Selecting previously unselected package libjs-prettify. 277s Preparing to unpack .../104-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 277s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 277s Selecting previously unselected package libkpathsea6:arm64. 277s Preparing to unpack .../105-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ... 277s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ... 277s Selecting previously unselected package liblapack3:arm64. 277s Preparing to unpack .../106-liblapack3_3.12.1-2_arm64.deb ... 277s Unpacking liblapack3:arm64 (3.12.1-2) ... 277s Selecting previously unselected package liblapack-dev:arm64. 277s Preparing to unpack .../107-liblapack-dev_3.12.1-2_arm64.deb ... 277s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 278s Selecting previously unselected package liblua5.4-0:arm64. 278s Preparing to unpack .../108-liblua5.4-0_5.4.7-1_arm64.deb ... 278s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 278s Selecting previously unselected package libmagick++-7.q16-5:arm64. 278s Preparing to unpack .../109-libmagick++-7.q16-5_8%3a7.1.1.43+dfsg1-1_arm64.deb ... 278s Unpacking libmagick++-7.q16-5:arm64 (8:7.1.1.43+dfsg1-1) ... 278s Selecting previously unselected package libmpfi0:arm64. 278s Preparing to unpack .../110-libmpfi0_1.5.4+ds-4_arm64.deb ... 278s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 278s Selecting previously unselected package libncurses-dev:arm64. 278s Preparing to unpack .../111-libncurses-dev_6.5+20250216-2_arm64.deb ... 278s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 278s Selecting previously unselected package libthai-data. 278s Preparing to unpack .../112-libthai-data_0.1.29-2build1_all.deb ... 278s Unpacking libthai-data (0.1.29-2build1) ... 278s Selecting previously unselected package libthai0:arm64. 278s Preparing to unpack .../113-libthai0_0.1.29-2build1_arm64.deb ... 278s Unpacking libthai0:arm64 (0.1.29-2build1) ... 278s Selecting previously unselected package libpango-1.0-0:arm64. 278s Preparing to unpack .../114-libpango-1.0-0_1.56.2-1_arm64.deb ... 278s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 278s Selecting previously unselected package libpangoft2-1.0-0:arm64. 278s Preparing to unpack .../115-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 278s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 278s Selecting previously unselected package libpangocairo-1.0-0:arm64. 278s Preparing to unpack .../116-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 278s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 278s Selecting previously unselected package libpaper2:arm64. 278s Preparing to unpack .../117-libpaper2_2.2.5-0.3_arm64.deb ... 278s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 278s Selecting previously unselected package libpaper-utils. 278s Preparing to unpack .../118-libpaper-utils_2.2.5-0.3_arm64.deb ... 278s Unpacking libpaper-utils (2.2.5-0.3) ... 278s Selecting previously unselected package libpcre2-16-0:arm64. 278s Preparing to unpack .../119-libpcre2-16-0_10.45-1_arm64.deb ... 278s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 278s Selecting previously unselected package libpcre2-32-0:arm64. 278s Preparing to unpack .../120-libpcre2-32-0_10.45-1_arm64.deb ... 278s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 278s Selecting previously unselected package libpcre2-posix3:arm64. 278s Preparing to unpack .../121-libpcre2-posix3_10.45-1_arm64.deb ... 278s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 278s Selecting previously unselected package libpcre2-dev:arm64. 278s Preparing to unpack .../122-libpcre2-dev_10.45-1_arm64.deb ... 278s Unpacking libpcre2-dev:arm64 (10.45-1) ... 278s Selecting previously unselected package libpkgconf3:arm64. 278s Preparing to unpack .../123-libpkgconf3_1.8.1-4_arm64.deb ... 278s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 278s Selecting previously unselected package zlib1g-dev:arm64. 278s Preparing to unpack .../124-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 278s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 278s Selecting previously unselected package libpng-dev:arm64. 278s Preparing to unpack .../125-libpng-dev_1.6.47-1_arm64.deb ... 278s Unpacking libpng-dev:arm64 (1.6.47-1) ... 278s Selecting previously unselected package libpotrace0:arm64. 278s Preparing to unpack .../126-libpotrace0_1.16-2build1_arm64.deb ... 278s Unpacking libpotrace0:arm64 (1.16-2build1) ... 278s Selecting previously unselected package libptexenc1:arm64. 278s Preparing to unpack .../127-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 278s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 279s Selecting previously unselected package libreadline-dev:arm64. 279s Preparing to unpack .../128-libreadline-dev_8.2-6_arm64.deb ... 279s Unpacking libreadline-dev:arm64 (8.2-6) ... 279s Selecting previously unselected package libsm6:arm64. 279s Preparing to unpack .../129-libsm6_2%3a1.2.4-1_arm64.deb ... 279s Unpacking libsm6:arm64 (2:1.2.4-1) ... 279s Selecting previously unselected package libsynctex2:arm64. 279s Preparing to unpack .../130-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 279s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 279s Selecting previously unselected package libtcl8.6:arm64. 279s Preparing to unpack .../131-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 279s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 279s Selecting previously unselected package libteckit0:arm64. 279s Preparing to unpack .../132-libteckit0_2.5.12+ds1-1_arm64.deb ... 279s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 279s Selecting previously unselected package libtexlua53-5:arm64. 279s Preparing to unpack .../133-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 279s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 279s Selecting previously unselected package libxft2:arm64. 279s Preparing to unpack .../134-libxft2_2.3.6-1build1_arm64.deb ... 279s Unpacking libxft2:arm64 (2.3.6-1build1) ... 279s Selecting previously unselected package libxss1:arm64. 279s Preparing to unpack .../135-libxss1_1%3a1.2.3-1build3_arm64.deb ... 279s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 279s Selecting previously unselected package libtk8.6:arm64. 279s Preparing to unpack .../136-libtk8.6_8.6.16-1_arm64.deb ... 279s Unpacking libtk8.6:arm64 (8.6.16-1) ... 279s Selecting previously unselected package libxt6t64:arm64. 279s Preparing to unpack .../137-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 279s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 279s Selecting previously unselected package libxmu6:arm64. 279s Preparing to unpack .../138-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 279s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 279s Selecting previously unselected package libxpm4:arm64. 279s Preparing to unpack .../139-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 279s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 279s Selecting previously unselected package libxaw7:arm64. 279s Preparing to unpack .../140-libxaw7_2%3a1.0.16-1_arm64.deb ... 279s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 279s Selecting previously unselected package libxi6:arm64. 279s Preparing to unpack .../141-libxi6_2%3a1.8.2-1_arm64.deb ... 279s Unpacking libxi6:arm64 (2:1.8.2-1) ... 279s Selecting previously unselected package libzzip-0-13t64:arm64. 279s Preparing to unpack .../142-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 279s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 279s Selecting previously unselected package zip. 279s Preparing to unpack .../143-zip_3.0-14ubuntu2_arm64.deb ... 279s Unpacking zip (3.0-14ubuntu2) ... 279s Selecting previously unselected package unzip. 279s Preparing to unpack .../144-unzip_6.0-28ubuntu6_arm64.deb ... 279s Unpacking unzip (6.0-28ubuntu6) ... 279s Selecting previously unselected package xdg-utils. 279s Preparing to unpack .../145-xdg-utils_1.2.1-2ubuntu1_all.deb ... 279s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 279s Selecting previously unselected package r-base-core. 279s Preparing to unpack .../146-r-base-core_4.4.3-1_arm64.deb ... 280s Unpacking r-base-core (4.4.3-1) ... 280s Selecting previously unselected package r-cran-littler. 280s Preparing to unpack .../147-r-cran-littler_0.3.20-2_arm64.deb ... 280s Unpacking r-cran-littler (0.3.20-2) ... 280s Selecting previously unselected package littler. 280s Preparing to unpack .../148-littler_0.3.20-2_all.deb ... 280s Unpacking littler (0.3.20-2) ... 280s Selecting previously unselected package node-bootstrap-sass. 280s Preparing to unpack .../149-node-bootstrap-sass_3.4.3-2_all.deb ... 280s Unpacking node-bootstrap-sass (3.4.3-2) ... 280s Selecting previously unselected package node-html5shiv. 280s Preparing to unpack .../150-node-html5shiv_3.7.3+dfsg-5_all.deb ... 280s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 280s Selecting previously unselected package node-normalize.css. 280s Preparing to unpack .../151-node-normalize.css_8.0.1-5_all.deb ... 280s Unpacking node-normalize.css (8.0.1-5) ... 280s Selecting previously unselected package pandoc-data. 280s Preparing to unpack .../152-pandoc-data_3.1.11.1-3build1_all.deb ... 280s Unpacking pandoc-data (3.1.11.1-3build1) ... 280s Selecting previously unselected package pandoc. 280s Preparing to unpack .../153-pandoc_3.1.11.1+ds-2_arm64.deb ... 280s Unpacking pandoc (3.1.11.1+ds-2) ... 281s Selecting previously unselected package liblzma-dev:arm64. 281s Preparing to unpack .../154-liblzma-dev_5.6.4-1_arm64.deb ... 281s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 281s Selecting previously unselected package pkgconf-bin. 281s Preparing to unpack .../155-pkgconf-bin_1.8.1-4_arm64.deb ... 281s Unpacking pkgconf-bin (1.8.1-4) ... 281s Selecting previously unselected package pkgconf:arm64. 281s Preparing to unpack .../156-pkgconf_1.8.1-4_arm64.deb ... 281s Unpacking pkgconf:arm64 (1.8.1-4) ... 281s Selecting previously unselected package libtirpc-dev:arm64. 281s Preparing to unpack .../157-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 281s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 281s Selecting previously unselected package r-base-dev. 281s Preparing to unpack .../158-r-base-dev_4.4.3-1_all.deb ... 281s Unpacking r-base-dev (4.4.3-1) ... 281s Selecting previously unselected package pkg-r-autopkgtest. 281s Preparing to unpack .../159-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 281s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 281s Selecting previously unselected package r-bioc-biocgenerics. 281s Preparing to unpack .../160-r-bioc-biocgenerics_0.52.0-2_all.deb ... 281s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 281s Selecting previously unselected package r-bioc-biobase. 281s Preparing to unpack .../161-r-bioc-biobase_2.66.0-2_arm64.deb ... 281s Unpacking r-bioc-biobase (2.66.0-2) ... 282s Selecting previously unselected package r-bioc-s4vectors. 282s Preparing to unpack .../162-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 282s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 282s Selecting previously unselected package r-bioc-iranges. 282s Preparing to unpack .../163-r-bioc-iranges_2.40.1-2_arm64.deb ... 282s Unpacking r-bioc-iranges (2.40.1-2) ... 282s Selecting previously unselected package r-cran-dbi. 282s Preparing to unpack .../164-r-cran-dbi_1.2.3-1_all.deb ... 282s Unpacking r-cran-dbi (1.2.3-1) ... 282s Selecting previously unselected package r-cran-bit. 282s Preparing to unpack .../165-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 282s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 282s Selecting previously unselected package r-cran-bit64. 282s Preparing to unpack .../166-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 282s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 282s Selecting previously unselected package r-cran-rlang. 282s Preparing to unpack .../167-r-cran-rlang_1.1.5-1_arm64.deb ... 282s Unpacking r-cran-rlang (1.1.5-1) ... 282s Selecting previously unselected package r-cran-cli. 282s Preparing to unpack .../168-r-cran-cli_3.6.4-1_arm64.deb ... 282s Unpacking r-cran-cli (3.6.4-1) ... 282s Selecting previously unselected package r-cran-glue. 282s Preparing to unpack .../169-r-cran-glue_1.8.0-1_arm64.deb ... 282s Unpacking r-cran-glue (1.8.0-1) ... 282s Selecting previously unselected package r-cran-lifecycle. 282s Preparing to unpack .../170-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 282s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 282s Selecting previously unselected package r-cran-vctrs. 282s Preparing to unpack .../171-r-cran-vctrs_0.6.5-1_arm64.deb ... 282s Unpacking r-cran-vctrs (0.6.5-1) ... 282s Selecting previously unselected package r-cran-blob. 282s Preparing to unpack .../172-r-cran-blob_1.2.4-1_all.deb ... 282s Unpacking r-cran-blob (1.2.4-1) ... 282s Selecting previously unselected package r-cran-fastmap. 282s Preparing to unpack .../173-r-cran-fastmap_1.2.0-1_arm64.deb ... 282s Unpacking r-cran-fastmap (1.2.0-1) ... 282s Selecting previously unselected package r-cran-cachem. 282s Preparing to unpack .../174-r-cran-cachem_1.1.0-1_arm64.deb ... 282s Unpacking r-cran-cachem (1.1.0-1) ... 282s Selecting previously unselected package r-cran-memoise. 282s Preparing to unpack .../175-r-cran-memoise_2.0.1-1_all.deb ... 282s Unpacking r-cran-memoise (2.0.1-1) ... 282s Selecting previously unselected package r-cran-pkgconfig. 282s Preparing to unpack .../176-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 282s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 282s Selecting previously unselected package r-cran-plogr. 282s Preparing to unpack .../177-r-cran-plogr_0.2.0-3build1_all.deb ... 282s Unpacking r-cran-plogr (0.2.0-3build1) ... 282s Selecting previously unselected package r-cran-cpp11. 282s Preparing to unpack .../178-r-cran-cpp11_0.5.2-1_all.deb ... 282s Unpacking r-cran-cpp11 (0.5.2-1) ... 282s Selecting previously unselected package r-cran-rsqlite. 282s Preparing to unpack .../179-r-cran-rsqlite_2.3.9-1_arm64.deb ... 282s Unpacking r-cran-rsqlite (2.3.9-1) ... 282s Selecting previously unselected package r-cran-curl. 282s Preparing to unpack .../180-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 282s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 282s Selecting previously unselected package r-cran-jsonlite. 283s Preparing to unpack .../181-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 283s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 283s Selecting previously unselected package r-cran-mime. 283s Preparing to unpack .../182-r-cran-mime_0.12-2_arm64.deb ... 283s Unpacking r-cran-mime (0.12-2) ... 283s Selecting previously unselected package r-cran-sys. 283s Preparing to unpack .../183-r-cran-sys_3.4.3-1_arm64.deb ... 283s Unpacking r-cran-sys (3.4.3-1) ... 283s Selecting previously unselected package r-cran-askpass. 283s Preparing to unpack .../184-r-cran-askpass_1.2.1-1_arm64.deb ... 283s Unpacking r-cran-askpass (1.2.1-1) ... 283s Selecting previously unselected package r-cran-openssl. 283s Preparing to unpack .../185-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 283s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 283s Selecting previously unselected package r-cran-r6. 283s Preparing to unpack .../186-r-cran-r6_2.6.1-1_all.deb ... 283s Unpacking r-cran-r6 (2.6.1-1) ... 283s Selecting previously unselected package r-cran-httr. 283s Preparing to unpack .../187-r-cran-httr_1.4.7+dfsg-1_all.deb ... 283s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 283s Selecting previously unselected package r-cran-png. 283s Preparing to unpack .../188-r-cran-png_0.1-8-1build2_arm64.deb ... 283s Unpacking r-cran-png (0.1-8-1build2) ... 283s Selecting previously unselected package r-bioc-zlibbioc. 283s Preparing to unpack .../189-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 283s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 283s Selecting previously unselected package r-bioc-xvector. 283s Preparing to unpack .../190-r-bioc-xvector_0.46.0-2_arm64.deb ... 283s Unpacking r-bioc-xvector (0.46.0-2) ... 283s Selecting previously unselected package r-bioc-ucsc.utils. 283s Preparing to unpack .../191-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 283s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 283s Selecting previously unselected package r-bioc-genomeinfodbdata. 283s Preparing to unpack .../192-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 283s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 283s Selecting previously unselected package r-bioc-genomeinfodb. 283s Preparing to unpack .../193-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 283s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 283s Selecting previously unselected package r-cran-crayon. 283s Preparing to unpack .../194-r-cran-crayon_1.5.3-1_all.deb ... 283s Unpacking r-cran-crayon (1.5.3-1) ... 283s Selecting previously unselected package r-bioc-biostrings. 283s Preparing to unpack .../195-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 283s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 283s Selecting previously unselected package r-bioc-keggrest. 283s Preparing to unpack .../196-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 283s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 283s Selecting previously unselected package r-bioc-annotationdbi. 283s Preparing to unpack .../197-r-bioc-annotationdbi_1.68.0-2_all.deb ... 283s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 284s Selecting previously unselected package r-cran-generics. 284s Preparing to unpack .../198-r-cran-generics_0.1.3-1_all.deb ... 284s Unpacking r-cran-generics (0.1.3-1) ... 284s Selecting previously unselected package r-cran-magrittr. 284s Preparing to unpack .../199-r-cran-magrittr_2.0.3-1_arm64.deb ... 284s Unpacking r-cran-magrittr (2.0.3-1) ... 284s Selecting previously unselected package r-cran-utf8. 284s Preparing to unpack .../200-r-cran-utf8_1.2.4-1_arm64.deb ... 284s Unpacking r-cran-utf8 (1.2.4-1) ... 284s Selecting previously unselected package r-cran-pillar. 284s Preparing to unpack .../201-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 284s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 284s Selecting previously unselected package r-cran-fansi. 284s Preparing to unpack .../202-r-cran-fansi_1.0.5-1_arm64.deb ... 284s Unpacking r-cran-fansi (1.0.5-1) ... 284s Selecting previously unselected package r-cran-tibble. 284s Preparing to unpack .../203-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 284s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 284s Selecting previously unselected package r-cran-withr. 284s Preparing to unpack .../204-r-cran-withr_3.0.2+dfsg-1_all.deb ... 284s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 284s Selecting previously unselected package r-cran-tidyselect. 284s Preparing to unpack .../205-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 284s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 284s Selecting previously unselected package r-cran-dplyr. 284s Preparing to unpack .../206-r-cran-dplyr_1.1.4-4_arm64.deb ... 284s Unpacking r-cran-dplyr (1.1.4-4) ... 284s Selecting previously unselected package r-cran-purrr. 284s Preparing to unpack .../207-r-cran-purrr_1.0.4-1_arm64.deb ... 284s Unpacking r-cran-purrr (1.0.4-1) ... 284s Selecting previously unselected package r-cran-stringi. 284s Preparing to unpack .../208-r-cran-stringi_1.8.4-1build1_arm64.deb ... 284s Unpacking r-cran-stringi (1.8.4-1build1) ... 284s Selecting previously unselected package r-cran-stringr. 284s Preparing to unpack .../209-r-cran-stringr_1.5.1-1_all.deb ... 284s Unpacking r-cran-stringr (1.5.1-1) ... 284s Selecting previously unselected package r-cran-tidyr. 284s Preparing to unpack .../210-r-cran-tidyr_1.3.1-1_arm64.deb ... 284s Unpacking r-cran-tidyr (1.3.1-1) ... 284s Selecting previously unselected package r-cran-dbplyr. 284s Preparing to unpack .../211-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 284s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 284s Selecting previously unselected package r-cran-filelock. 284s Preparing to unpack .../212-r-cran-filelock_1.0.3-1_arm64.deb ... 284s Unpacking r-cran-filelock (1.0.3-1) ... 284s Selecting previously unselected package r-bioc-biocfilecache. 284s Preparing to unpack .../213-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 284s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 284s Selecting previously unselected package r-cran-biocmanager. 284s Preparing to unpack .../214-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 284s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 284s Selecting previously unselected package r-bioc-biocversion. 284s Preparing to unpack .../215-r-bioc-biocversion_3.20.0-2_all.deb ... 284s Unpacking r-bioc-biocversion (3.20.0-2) ... 284s Selecting previously unselected package r-cran-rappdirs. 284s Preparing to unpack .../216-r-cran-rappdirs_0.3.3-1_arm64.deb ... 284s Unpacking r-cran-rappdirs (0.3.3-1) ... 284s Selecting previously unselected package r-cran-yaml. 284s Preparing to unpack .../217-r-cran-yaml_2.3.10-1_arm64.deb ... 284s Unpacking r-cran-yaml (2.3.10-1) ... 285s Selecting previously unselected package r-bioc-annotationhub. 285s Preparing to unpack .../218-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 285s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 285s Selecting previously unselected package r-bioc-biocio. 285s Preparing to unpack .../219-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 285s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 285s Selecting previously unselected package r-cran-formatr. 285s Preparing to unpack .../220-r-cran-formatr_1.14-2_all.deb ... 285s Unpacking r-cran-formatr (1.14-2) ... 285s Selecting previously unselected package r-cran-lambda.r. 285s Preparing to unpack .../221-r-cran-lambda.r_1.2.4-2build1_all.deb ... 285s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 285s Selecting previously unselected package r-cran-futile.options. 285s Preparing to unpack .../222-r-cran-futile.options_1.0.1-3build1_all.deb ... 285s Unpacking r-cran-futile.options (1.0.1-3build1) ... 285s Selecting previously unselected package r-cran-futile.logger. 285s Preparing to unpack .../223-r-cran-futile.logger_1.4.3-4build1_all.deb ... 285s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 285s Selecting previously unselected package r-cran-snow. 285s Preparing to unpack .../224-r-cran-snow_1%3a0.4.4-2_all.deb ... 285s Unpacking r-cran-snow (1:0.4.4-2) ... 285s Selecting previously unselected package r-cran-codetools. 285s Preparing to unpack .../225-r-cran-codetools_0.2-20-1_all.deb ... 285s Unpacking r-cran-codetools (0.2-20-1) ... 285s Selecting previously unselected package r-cran-bh. 285s Preparing to unpack .../226-r-cran-bh_1.84.0-1_all.deb ... 285s Unpacking r-cran-bh (1.84.0-1) ... 285s Selecting previously unselected package r-bioc-biocparallel. 285s Preparing to unpack .../227-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 285s Unpacking r-bioc-biocparallel (1.40.0-2) ... 285s Selecting previously unselected package r-cran-base64enc. 285s Preparing to unpack .../228-r-cran-base64enc_0.1-3-3_arm64.deb ... 285s Unpacking r-cran-base64enc (0.1-3-3) ... 285s Selecting previously unselected package r-cran-digest. 285s Preparing to unpack .../229-r-cran-digest_0.6.37-1_arm64.deb ... 285s Unpacking r-cran-digest (0.6.37-1) ... 285s Selecting previously unselected package r-cran-htmltools. 285s Preparing to unpack .../230-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 285s Unpacking r-cran-htmltools (0.5.8.1-1) ... 285s Selecting previously unselected package r-cran-evaluate. 285s Preparing to unpack .../231-r-cran-evaluate_1.0.3-1_all.deb ... 285s Unpacking r-cran-evaluate (1.0.3-1) ... 285s Selecting previously unselected package r-cran-xfun. 285s Preparing to unpack .../232-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 285s Unpacking r-cran-xfun (0.51+dfsg-1) ... 285s Selecting previously unselected package r-cran-highr. 285s Preparing to unpack .../233-r-cran-highr_0.11+dfsg-1_all.deb ... 285s Unpacking r-cran-highr (0.11+dfsg-1) ... 285s Selecting previously unselected package libjs-mathjax. 285s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 285s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 286s Selecting previously unselected package r-cran-knitr. 286s Preparing to unpack .../235-r-cran-knitr_1.49+dfsg-1_all.deb ... 286s Unpacking r-cran-knitr (1.49+dfsg-1) ... 286s Selecting previously unselected package r-cran-jquerylib. 286s Preparing to unpack .../236-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 286s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 286s Selecting previously unselected package r-cran-fs. 286s Preparing to unpack .../237-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 286s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 286s Selecting previously unselected package r-cran-sass. 286s Preparing to unpack .../238-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 286s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 286s Selecting previously unselected package r-cran-bslib. 286s Preparing to unpack .../239-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 286s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 286s Selecting previously unselected package r-cran-fontawesome. 286s Preparing to unpack .../240-r-cran-fontawesome_0.5.3-1_all.deb ... 286s Unpacking r-cran-fontawesome (0.5.3-1) ... 286s Selecting previously unselected package r-cran-tinytex. 286s Preparing to unpack .../241-r-cran-tinytex_0.56-1_all.deb ... 286s Unpacking r-cran-tinytex (0.56-1) ... 286s Selecting previously unselected package libjs-modernizr. 286s Preparing to unpack .../242-libjs-modernizr_3.13.0-0.1_all.deb ... 286s Unpacking libjs-modernizr (3.13.0-0.1) ... 286s Selecting previously unselected package r-cran-pkgkitten. 286s Preparing to unpack .../243-r-cran-pkgkitten_0.2.4-1_all.deb ... 286s Unpacking r-cran-pkgkitten (0.2.4-1) ... 286s Selecting previously unselected package r-cran-rcpp. 286s Preparing to unpack .../244-r-cran-rcpp_1.0.14-1_arm64.deb ... 286s Unpacking r-cran-rcpp (1.0.14-1) ... 286s Selecting previously unselected package r-cran-later. 286s Preparing to unpack .../245-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 286s Unpacking r-cran-later (1.4.1+dfsg-1) ... 286s Selecting previously unselected package r-cran-promises. 287s Preparing to unpack .../246-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 287s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 287s Selecting previously unselected package r-cran-httpuv. 287s Preparing to unpack .../247-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 287s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 287s Selecting previously unselected package r-cran-xtable. 287s Preparing to unpack .../248-r-cran-xtable_1%3a1.8-4-2_all.deb ... 287s Unpacking r-cran-xtable (1:1.8-4-2) ... 287s Selecting previously unselected package r-cran-sourcetools. 287s Preparing to unpack .../249-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 287s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 287s Selecting previously unselected package r-cran-commonmark. 287s Preparing to unpack .../250-r-cran-commonmark_1.9.2-2_arm64.deb ... 287s Unpacking r-cran-commonmark (1.9.2-2) ... 287s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 287s Preparing to unpack .../251-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 287s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 287s Selecting previously unselected package r-cran-shiny. 287s Preparing to unpack .../252-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 287s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 287s Selecting previously unselected package r-cran-rmarkdown. 287s Preparing to unpack .../253-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 287s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 287s Selecting previously unselected package r-cran-bookdown. 287s Preparing to unpack .../254-r-cran-bookdown_0.42+dfsg-1_all.deb ... 287s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 287s Selecting previously unselected package tex-common. 287s Preparing to unpack .../255-tex-common_6.19_all.deb ... 287s Unpacking tex-common (6.19) ... 287s Selecting previously unselected package t1utils. 287s Preparing to unpack .../256-t1utils_1.41-4build3_arm64.deb ... 287s Unpacking t1utils (1.41-4build3) ... 287s Selecting previously unselected package texlive-binaries. 287s Preparing to unpack .../257-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 287s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 287s Selecting previously unselected package texlive-base. 287s Preparing to unpack .../258-texlive-base_2024.20250114-1_all.deb ... 287s Unpacking texlive-base (2024.20250114-1) ... 288s Selecting previously unselected package texlive-latex-base. 289s Preparing to unpack .../259-texlive-latex-base_2024.20250114-1_all.deb ... 289s Unpacking texlive-latex-base (2024.20250114-1) ... 289s Selecting previously unselected package texlive-bibtex-extra. 289s Preparing to unpack .../260-texlive-bibtex-extra_2024.20250114-1_all.deb ... 289s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 290s Selecting previously unselected package r-bioc-biocstyle. 290s Preparing to unpack .../261-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 290s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 290s Selecting previously unselected package r-bioc-genomicranges. 291s Preparing to unpack .../262-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 291s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 291s Selecting previously unselected package r-cran-xml. 291s Preparing to unpack .../263-r-cran-xml_3.99-0.18-1_arm64.deb ... 291s Unpacking r-cran-xml (3.99-0.18-1) ... 291s Selecting previously unselected package r-cran-bitops. 291s Preparing to unpack .../264-r-cran-bitops_1.0-9-1_arm64.deb ... 291s Unpacking r-cran-bitops (1.0-9-1) ... 291s Selecting previously unselected package r-bioc-rhtslib. 291s Preparing to unpack .../265-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 291s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 291s Selecting previously unselected package r-bioc-rsamtools. 291s Preparing to unpack .../266-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 291s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 291s Selecting previously unselected package r-cran-matrixstats. 291s Preparing to unpack .../267-r-cran-matrixstats_1.5.0-1_arm64.deb ... 291s Unpacking r-cran-matrixstats (1.5.0-1) ... 291s Selecting previously unselected package r-bioc-matrixgenerics. 291s Preparing to unpack .../268-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 291s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 291s Selecting previously unselected package r-cran-lattice. 291s Preparing to unpack .../269-r-cran-lattice_0.22-6-1_arm64.deb ... 291s Unpacking r-cran-lattice (0.22-6-1) ... 291s Selecting previously unselected package r-cran-matrix. 291s Preparing to unpack .../270-r-cran-matrix_1.7-3-1_arm64.deb ... 291s Unpacking r-cran-matrix (1.7-3-1) ... 291s Selecting previously unselected package r-cran-abind. 291s Preparing to unpack .../271-r-cran-abind_1.4-8-1_all.deb ... 291s Unpacking r-cran-abind (1.4-8-1) ... 291s Selecting previously unselected package r-bioc-s4arrays. 291s Preparing to unpack .../272-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 291s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 291s Selecting previously unselected package r-bioc-sparsearray. 291s Preparing to unpack .../273-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 291s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 291s Selecting previously unselected package r-bioc-delayedarray. 291s Preparing to unpack .../274-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 291s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 291s Selecting previously unselected package r-bioc-summarizedexperiment. 291s Preparing to unpack .../275-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 291s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 291s Selecting previously unselected package r-bioc-genomicalignments. 291s Preparing to unpack .../276-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 291s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 292s Selecting previously unselected package r-cran-rcurl. 292s Preparing to unpack .../277-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 292s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 292s Selecting previously unselected package r-cran-rjson. 292s Preparing to unpack .../278-r-cran-rjson_0.2.23-1_arm64.deb ... 292s Unpacking r-cran-rjson (0.2.23-1) ... 292s Selecting previously unselected package r-cran-restfulr. 292s Preparing to unpack .../279-r-cran-restfulr_0.0.15-1_arm64.deb ... 292s Unpacking r-cran-restfulr (0.0.15-1) ... 292s Selecting previously unselected package r-bioc-rtracklayer. 292s Preparing to unpack .../280-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 292s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 292s Selecting previously unselected package r-bioc-bsgenome. 292s Preparing to unpack .../281-r-bioc-bsgenome_1.74.0-2_all.deb ... 292s Unpacking r-bioc-bsgenome (1.74.0-2) ... 292s Selecting previously unselected package r-bioc-genomicfeatures. 292s Preparing to unpack .../282-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 292s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 292s Selecting previously unselected package r-cran-survival. 292s Preparing to unpack .../283-r-cran-survival_3.8-3-1_arm64.deb ... 292s Unpacking r-cran-survival (3.8-3-1) ... 292s Selecting previously unselected package r-bioc-snpstats. 292s Preparing to unpack .../284-r-bioc-snpstats_1.56.0+dfsg-2_arm64.deb ... 292s Unpacking r-bioc-snpstats (1.56.0+dfsg-2) ... 292s Selecting previously unselected package r-bioc-variantannotation. 292s Preparing to unpack .../285-r-bioc-variantannotation_1.52.0-2_arm64.deb ... 292s Unpacking r-bioc-variantannotation (1.52.0-2) ... 292s Selecting previously unselected package r-cran-colorspace. 292s Preparing to unpack .../286-r-cran-colorspace_2.1-1+dfsg-1_arm64.deb ... 292s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 292s Selecting previously unselected package r-cran-farver. 292s Preparing to unpack .../287-r-cran-farver_2.1.2-1_arm64.deb ... 292s Unpacking r-cran-farver (2.1.2-1) ... 292s Selecting previously unselected package r-cran-gtable. 292s Preparing to unpack .../288-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 292s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 292s Selecting previously unselected package r-cran-isoband. 292s Preparing to unpack .../289-r-cran-isoband_0.2.7-1_arm64.deb ... 292s Unpacking r-cran-isoband (0.2.7-1) ... 292s Selecting previously unselected package r-cran-mass. 292s Preparing to unpack .../290-r-cran-mass_7.3-64-1_arm64.deb ... 292s Unpacking r-cran-mass (7.3-64-1) ... 293s Selecting previously unselected package r-cran-nlme. 293s Preparing to unpack .../291-r-cran-nlme_3.1.167-1_arm64.deb ... 293s Unpacking r-cran-nlme (3.1.167-1) ... 293s Selecting previously unselected package r-cran-mgcv. 293s Preparing to unpack .../292-r-cran-mgcv_1.9-1-1_arm64.deb ... 293s Unpacking r-cran-mgcv (1.9-1-1) ... 293s Selecting previously unselected package r-cran-labeling. 293s Preparing to unpack .../293-r-cran-labeling_0.4.3-1_all.deb ... 293s Unpacking r-cran-labeling (0.4.3-1) ... 293s Selecting previously unselected package r-cran-munsell. 293s Preparing to unpack .../294-r-cran-munsell_0.5.1-1_all.deb ... 293s Unpacking r-cran-munsell (0.5.1-1) ... 293s Selecting previously unselected package r-cran-rcolorbrewer. 293s Preparing to unpack .../295-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 293s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 293s Selecting previously unselected package r-cran-viridislite. 293s Preparing to unpack .../296-r-cran-viridislite_0.4.2-2_all.deb ... 293s Unpacking r-cran-viridislite (0.4.2-2) ... 293s Selecting previously unselected package r-cran-scales. 293s Preparing to unpack .../297-r-cran-scales_1.3.0-1_all.deb ... 293s Unpacking r-cran-scales (1.3.0-1) ... 293s Selecting previously unselected package r-cran-ggplot2. 293s Preparing to unpack .../298-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 293s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 293s Selecting previously unselected package r-cran-magick. 293s Preparing to unpack .../299-r-cran-magick_2.8.5+dfsg-1build1_arm64.deb ... 293s Unpacking r-cran-magick (2.8.5+dfsg-1build1) ... 293s Selecting previously unselected package r-cran-runit. 293s Preparing to unpack .../300-r-cran-runit_0.4.33-1_all.deb ... 293s Unpacking r-cran-runit (0.4.33-1) ... 293s Setting up libjs-json (0~20221030+~1.0.8-1) ... 293s Setting up javascript-common (12) ... 293s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 293s Setting up liblcms2-2:arm64 (2.16-2) ... 293s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 293s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 293s Setting up libaom3:arm64 (3.12.0-1) ... 293s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 293s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 293s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 293s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 293s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 293s Setting up libxi6:arm64 (2:1.8.2-1) ... 293s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 293s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 293s Setting up libjs-popper.js (1.16.1+ds-6) ... 293s Setting up libxcb-render0:arm64 (1.17.0-2) ... 293s Setting up imagemagick-7-common 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... 298s Setting up r-bioc-genomicalignments (1.42.0-2) ... 298s Setting up r-bioc-rtracklayer (1.66.0-2) ... 298s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 298s Setting up r-bioc-bsgenome (1.74.0-2) ... 298s Setting up r-bioc-variantannotation (1.52.0-2) ... 298s Setting up libheif-plugin-aomdec:arm64 (1.19.7-1) ... 298s Setting up libheif-plugin-libde265:arm64 (1.19.7-1) ... 298s Setting up libheif1:arm64 (1.19.7-1) ... 298s Setting up libmagickcore-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... 298s Setting up libmagickwand-7.q16-10:arm64 (8:7.1.1.43+dfsg1-1) ... 298s Setting up libmagick++-7.q16-5:arm64 (8:7.1.1.43+dfsg1-1) ... 298s Setting up r-cran-magick (2.8.5+dfsg-1build1) ... 298s Processing triggers for man-db (2.13.0-1) ... 300s Processing triggers for install-info (7.1.1-1) ... 300s Processing triggers for libc-bin (2.41-1ubuntu2) ... 300s Processing triggers for tex-common (6.19) ... 301s Running updmap-sys. This may take some time... done. 301s Running mktexlsr /var/lib/texmf ... done. 301s Building format(s) --all. 339s This may take some time... done. 340s autopkgtest [15:18:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 340s autopkgtest [15:18:40]: test pkg-r-autopkgtest: [----------------------- 341s Test: Try to load the R library VariantAnnotation 341s 341s R version 4.4.3 (2025-02-28) -- "Trophy Case" 341s Copyright (C) 2025 The R Foundation for Statistical Computing 341s Platform: aarch64-unknown-linux-gnu 341s 341s R is free software and comes with ABSOLUTELY NO WARRANTY. 341s You are welcome to redistribute it under certain conditions. 341s Type 'license()' or 'licence()' for distribution details. 341s 341s R is a collaborative project with many contributors. 341s Type 'contributors()' for more information and 341s 'citation()' on how to cite R or R packages in publications. 341s 341s Type 'demo()' for some demos, 'help()' for on-line help, or 341s 'help.start()' for an HTML browser interface to help. 341s Type 'q()' to quit R. 341s 341s > library('VariantAnnotation') 341s Loading required package: BiocGenerics 341s 341s Attaching package: ‘BiocGenerics’ 341s 341s The following objects are masked from ‘package:stats’: 341s 341s IQR, mad, sd, var, xtabs 341s 341s The following objects are masked from ‘package:base’: 341s 341s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 341s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 341s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 341s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 341s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 341s table, tapply, union, unique, unsplit, which.max, which.min 341s 341s Loading required package: MatrixGenerics 341s Loading required package: matrixStats 341s 341s Attaching package: ‘MatrixGenerics’ 341s 341s The following objects are masked from ‘package:matrixStats’: 341s 341s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 341s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 341s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 341s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 341s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 341s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 341s colWeightedMeans, colWeightedMedians, colWeightedSds, 341s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 341s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 341s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 341s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 341s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 341s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 341s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 341s rowWeightedSds, rowWeightedVars 341s 341s Loading required package: GenomeInfoDb 341s Loading required package: S4Vectors 341s Loading required package: stats4 342s 342s Attaching package: ‘S4Vectors’ 342s 342s The following object is masked from ‘package:utils’: 342s 342s findMatches 342s 342s The following objects are masked from ‘package:base’: 342s 342s expand.grid, I, unname 342s 342s Loading required package: IRanges 343s Loading required package: GenomicRanges 343s Loading required package: SummarizedExperiment 343s Loading required package: Biobase 344s Welcome to Bioconductor 344s 344s Vignettes contain introductory material; view with 344s 'browseVignettes()'. To cite Bioconductor, see 344s 'citation("Biobase")', and for packages 'citation("pkgname")'. 344s 344s 344s Attaching package: ‘Biobase’ 344s 344s The following object is masked from ‘package:MatrixGenerics’: 344s 344s rowMedians 344s 344s The following objects are masked from ‘package:matrixStats’: 344s 344s anyMissing, rowMedians 344s 346s Loading required package: Rsamtools 346s Loading required package: Biostrings 346s Loading required package: XVector 347s 347s Attaching package: ‘Biostrings’ 347s 347s The following object is masked from ‘package:base’: 347s 347s strsplit 347s 352s > 352s > 352s 352s Attaching package: ‘VariantAnnotation’ 352s 352s The following object is masked from ‘package:base’: 352s 352s tabulate 352s 352s Other tests are currently unsupported! 352s They will be progressively added. 352s autopkgtest [15:18:52]: test pkg-r-autopkgtest: -----------------------] 353s autopkgtest [15:18:53]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 353s pkg-r-autopkgtest PASS 353s autopkgtest [15:18:53]: @@@@@@@@@@@@@@@@@@@@ summary 353s pkg-r-autopkgtest PASS 373s nova [W] Using flock in prodstack6-arm64 373s Creating nova instance adt-plucky-arm64-r-bioc-variantannotation-20250315-151300-juju-7f2275-prod-proposed-migration-environment-2-1dc0cdb5-37fc-4e74-9259-550ac4a92e2a from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 373s nova [W] Timed out waiting for 580ea24f-d0be-4a89-9935-5a39e28fc218 to get deleted.