0s autopkgtest [15:11:59]: starting date and time: 2025-03-15 15:11:59+0000 0s autopkgtest [15:11:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:11:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r_71y83b/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-titancna --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-39.secgroup --name adt-plucky-arm64-r-bioc-titancna-20250315-151158-juju-7f2275-prod-proposed-migration-environment-15-d8d22a8b-5d55-4e1b-a5e5-c2f927b0c360 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 489s autopkgtest [15:20:08]: testbed dpkg architecture: arm64 576s autopkgtest [15:21:35]: testbed apt version: 2.9.33 582s autopkgtest [15:21:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 583s autopkgtest [15:21:42]: testbed release detected to be: None 595s autopkgtest [15:21:54]: updating testbed package index (apt update) 601s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 604s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 604s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 604s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 604s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 604s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 604s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 604s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 604s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 604s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 604s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 604s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 604s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 604s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 604s Fetched 1094 kB in 1s (834 kB/s) 604s Reading package lists... 650s + lsb_release --codename --short 650s + RELEASE=plucky 650s + cat 650s + [ plucky != trusty ] 650s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 650s Reading package lists... 650s Building dependency tree... 650s Reading state information... 650s Calculating upgrade... 651s Calculating upgrade... 651s The following packages will be upgraded: 651s python3-jinja2 strace 651s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 651s Need to get 608 kB of archives. 651s After this operation, 11.3 kB of additional disk space will be used. 651s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 652s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 652s Fetched 608 kB in 1s (837 kB/s) 653s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 653s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 653s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 653s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 653s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 653s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 653s Setting up strace (6.13+ds-1ubuntu1) ... 653s Processing triggers for man-db (2.13.0-1) ... 654s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 654s + /usr/lib/apt/apt-helper analyze-pattern ?true 654s + uname -r 654s + sed s/\./\\./g 654s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 654s + apt list ?obsolete 654s + tail -n+2 654s + cut -d/ -f1 654s + grep -v ^linux-.*6\.14\.0-10-generic.* 654s + obsolete_pkgs=linux-headers-6.11.0-8-generic 654s linux-headers-6.11.0-8 654s linux-image-6.11.0-8-generic 654s linux-modules-6.11.0-8-generic 654s linux-tools-6.11.0-8-generic 654s linux-tools-6.11.0-8 654s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 654s Reading package lists... 655s Building dependency tree... 655s Reading state information... 655s Solving dependencies... 655s The following packages will be REMOVED: 656s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 656s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 656s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 656s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 656s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 656s After this operation, 267 MB disk space will be freed. 656s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 656s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 656s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 656s Removing libpython3.12t64:arm64 (3.12.9-1) ... 656s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 656s Removing libnsl2:arm64 (1.3.0-3build3) ... 656s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 656s Removing libunwind8:arm64 (1.6.2-3.1) ... 656s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 656s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 658s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 658s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 658s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 658s /etc/kernel/postrm.d/initramfs-tools: 658s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 658s /etc/kernel/postrm.d/zz-flash-kernel: 658s flash-kernel: Kernel 6.11.0-8-generic has been removed. 658s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 659s /etc/kernel/postrm.d/zz-update-grub: 659s Sourcing file `/etc/default/grub' 659s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 659s Generating grub configuration file ... 659s Found linux image: /boot/vmlinuz-6.14.0-10-generic 659s Found initrd image: /boot/initrd.img-6.14.0-10-generic 659s Warning: os-prober will not be executed to detect other bootable partitions. 659s Systems on them will not be added to the GRUB boot configuration. 659s Check GRUB_DISABLE_OS_PROBER documentation entry. 659s Adding boot menu entry for UEFI Firmware Settings ... 659s done 659s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 660s Processing triggers for libc-bin (2.41-1ubuntu1) ... 660s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 660s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 660s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 660s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 660s + grep -q trusty /etc/lsb-release 660s + [ ! -d /usr/share/doc/unattended-upgrades ] 660s + [ ! -d /usr/share/doc/lxd ] 660s + [ ! -d /usr/share/doc/lxd-client ] 660s + [ ! -d /usr/share/doc/snapd ] 660s + type iptables 660s + cat 660s + chmod 755 /etc/rc.local 660s + . /etc/rc.local 660s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 660s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 660s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 660s + uname -m 660s + [ aarch64 = ppc64le ] 660s + [ -d /run/systemd/system ] 660s + systemd-detect-virt --quiet --vm 660s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 660s + cat 660s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 660s + echo COMPRESS=lz4 662s autopkgtest [15:23:01]: upgrading testbed (apt dist-upgrade and autopurge) 670s Reading package lists... 670s Building dependency tree... 670s Reading state information... 671s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 671s Starting 2 pkgProblemResolver with broken count: 0 671s Done 672s Entering ResolveByKeep 672s 672s Calculating upgrade... 673s The following packages will be upgraded: 673s libc-bin libc-dev-bin libc6 libc6-dev locales 673s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 673s Need to get 9530 kB of archives. 673s After this operation, 0 B of additional disk space will be used. 673s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 674s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 674s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 675s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 675s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 676s Preconfiguring packages ... 676s Fetched 9530 kB in 3s (3005 kB/s) 676s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 676s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 676s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 677s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 677s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 677s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 677s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 677s Setting up libc6:arm64 (2.41-1ubuntu2) ... 677s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 677s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 677s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 677s Setting up libc-bin (2.41-1ubuntu2) ... 677s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 677s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 677s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 678s Setting up locales (2.41-1ubuntu2) ... 678s Generating locales (this might take a while)... 680s en_US.UTF-8... done 680s Generation complete. 680s Setting up libc-dev-bin (2.41-1ubuntu2) ... 680s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 680s Processing triggers for man-db (2.13.0-1) ... 681s Processing triggers for systemd (257.3-1ubuntu3) ... 685s Reading package lists... 685s Building dependency tree... 685s Reading state information... 686s Starting pkgProblemResolver with broken count: 0 686s Starting 2 pkgProblemResolver with broken count: 0 686s Done 686s Solving dependencies... 687s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 687s autopkgtest [15:23:26]: rebooting testbed after setup commands that affected boot 715s autopkgtest [15:23:54]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 719s autopkgtest [15:23:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-titancna 724s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-titancna 1.44.0-2 (dsc) [2253 B] 724s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-titancna 1.44.0-2 (tar) [4013 kB] 724s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-titancna 1.44.0-2 (diff) [2928 B] 725s gpgv: Signature made Tue Jan 14 08:11:16 2025 UTC 725s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 725s gpgv: issuer "crusoe@debian.org" 725s gpgv: Can't check signature: No public key 725s dpkg-source: warning: cannot verify inline signature for ./r-bioc-titancna_1.44.0-2.dsc: no acceptable signature found 725s autopkgtest [15:24:04]: testing package r-bioc-titancna version 1.44.0-2 725s autopkgtest [15:24:04]: build not needed 728s autopkgtest [15:24:07]: test pkg-r-autopkgtest: preparing testbed 728s Reading package lists... 728s Building dependency tree... 728s Reading state information... 729s Starting pkgProblemResolver with broken count: 0 729s Starting 2 pkgProblemResolver with broken count: 0 729s Done 730s The following NEW packages will be installed: 730s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 730s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 730s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 730s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 730s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 730s libasan8 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 730s libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 730s libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 730s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 730s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 730s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 730s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 730s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 730s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev 730s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 730s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 730s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf 730s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 730s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings 730s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 730s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 730s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 730s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 730s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 730s r-bioc-titancna r-bioc-ucsc.utils r-bioc-variantannotation r-bioc-xvector 730s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit 730s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli 730s r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 730s r-cran-dbi r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-foreach 730s r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics 730s r-cran-glue r-cran-httr r-cran-iterators r-cran-jsonlite r-cran-lambda.r 730s r-cran-lattice r-cran-lifecycle r-cran-magrittr r-cran-matrix 730s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 730s r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl 730s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-snow 730s r-cran-sys r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs 730s r-cran-withr r-cran-xml r-cran-yaml unzip x11-common xdg-utils zip 730s zlib1g-dev 730s 0 upgraded, 183 newly installed, 0 to remove and 0 not upgraded. 730s Need to get 249 MB of archives. 730s After this operation, 744 MB of additional disk space will be used. 730s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 731s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 731s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 739s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 739s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 739s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 739s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 739s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 739s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 739s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 742s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 743s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 746s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 747s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 748s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 750s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 770s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 772s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 772s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 772s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 774s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 786s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 787s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 787s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 787s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 787s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 787s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 787s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 788s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 788s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 789s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 789s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 789s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 790s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 801s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 801s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 801s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 801s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 802s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 802s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 802s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 812s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 812s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 812s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 812s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 813s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 813s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 813s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 813s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 813s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 814s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 814s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 814s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 814s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 815s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 815s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 826s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 826s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 826s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 826s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 826s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 826s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 829s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 833s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 834s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 834s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 834s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 834s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 835s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 835s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 835s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 835s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 835s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 836s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 836s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 836s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 837s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 837s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 838s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 838s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 838s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 839s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 839s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 840s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 840s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 840s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 840s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 840s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 840s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 841s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 842s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 842s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 842s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 842s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 873s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 873s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 874s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 874s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 874s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 874s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 874s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 875s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 877s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 879s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 881s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 882s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 882s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 883s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 884s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 886s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 886s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 886s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 887s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 887s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 888s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 888s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 888s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 888s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 888s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 888s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 889s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 890s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 890s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 890s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 890s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 890s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 891s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 891s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 891s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 891s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 891s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 892s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 892s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 902s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 905s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 906s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 915s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 915s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 918s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 919s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 919s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 919s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 919s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 919s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 919s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 919s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 920s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 920s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 922s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 923s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 923s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 925s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 927s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 928s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 928s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 929s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 932s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 932s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 933s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 934s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 935s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 936s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 938s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 939s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 939s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 939s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 939s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 943s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 948s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 949s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-variantannotation arm64 1.52.0-2 [3592 kB] 952s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 952s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 952s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-data.table arm64 1.17.0+dfsg-1 [2129 kB] 954s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 954s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 954s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 954s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 955s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 955s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 956s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 956s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 956s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 958s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-titancna arm64 1.44.0-2 [4113 kB] 962s Preconfiguring packages ... 962s Fetched 249 MB in 3min 51s (1076 kB/s) 962s Selecting previously unselected package libisl23:arm64. 962s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 962s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 962s Unpacking libisl23:arm64 (0.27-1) ... 962s Selecting previously unselected package libmpc3:arm64. 962s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 962s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 962s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 962s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 962s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 962s Selecting previously unselected package cpp-14. 962s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 962s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 962s Selecting previously unselected package cpp-aarch64-linux-gnu. 962s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 962s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 962s Selecting previously unselected package cpp. 962s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 962s Unpacking cpp (4:14.2.0-1ubuntu1) ... 962s Selecting previously unselected package libcc1-0:arm64. 962s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 962s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 962s Selecting previously unselected package libgomp1:arm64. 963s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package libitm1:arm64. 963s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package libasan8:arm64. 963s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package liblsan0:arm64. 963s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package libtsan2:arm64. 963s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package libubsan1:arm64. 963s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package libhwasan0:arm64. 963s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 963s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 963s Selecting previously unselected package libgcc-14-dev:arm64. 963s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 963s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 963s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 963s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 963s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 964s Selecting previously unselected package gcc-14. 964s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 964s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 964s Selecting previously unselected package gcc-aarch64-linux-gnu. 964s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 964s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 964s Selecting previously unselected package gcc. 964s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 964s Unpacking gcc (4:14.2.0-1ubuntu1) ... 964s Selecting previously unselected package libstdc++-14-dev:arm64. 964s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 964s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 964s Selecting previously unselected package g++-14-aarch64-linux-gnu. 964s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 964s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 964s Selecting previously unselected package g++-14. 964s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 964s Unpacking g++-14 (14.2.0-17ubuntu3) ... 964s Selecting previously unselected package g++-aarch64-linux-gnu. 964s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 964s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 964s Selecting previously unselected package g++. 964s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 964s Unpacking g++ (4:14.2.0-1ubuntu1) ... 964s Selecting previously unselected package build-essential. 964s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 964s Unpacking build-essential (12.10ubuntu1) ... 964s Selecting previously unselected package dctrl-tools. 964s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 964s Unpacking dctrl-tools (2.24-3build3) ... 964s Selecting previously unselected package fonts-dejavu-mono. 964s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 964s Unpacking fonts-dejavu-mono (2.37-8) ... 964s Selecting previously unselected package fonts-dejavu-core. 964s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 964s Unpacking fonts-dejavu-core (2.37-8) ... 965s Selecting previously unselected package fontconfig-config. 965s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 965s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 965s Selecting previously unselected package libfontconfig1:arm64. 965s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 965s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 965s Selecting previously unselected package fontconfig. 965s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 965s Unpacking fontconfig (2.15.0-2ubuntu1) ... 965s Selecting previously unselected package libgfortran5:arm64. 965s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 965s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 965s Selecting previously unselected package libgfortran-14-dev:arm64. 965s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 965s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 965s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 965s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 965s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 965s Selecting previously unselected package gfortran-14. 965s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 965s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 965s Selecting previously unselected package gfortran-aarch64-linux-gnu. 965s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 965s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 965s Selecting previously unselected package gfortran. 965s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 965s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 965s Selecting previously unselected package icu-devtools. 965s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ... 965s Unpacking icu-devtools (76.1-1ubuntu2) ... 965s Selecting previously unselected package libblas3:arm64. 965s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ... 965s Unpacking libblas3:arm64 (3.12.1-2) ... 965s Selecting previously unselected package libblas-dev:arm64. 966s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ... 966s Unpacking libblas-dev:arm64 (3.12.1-2) ... 966s Selecting previously unselected package libboost1.83-dev:arm64. 966s Preparing to unpack .../040-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 966s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 967s Selecting previously unselected package libboost-dev:arm64. 967s Preparing to unpack .../041-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 967s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 967s Selecting previously unselected package libbz2-dev:arm64. 967s Preparing to unpack .../042-libbz2-dev_1.0.8-6_arm64.deb ... 967s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 968s Selecting previously unselected package libpixman-1-0:arm64. 968s Preparing to unpack .../043-libpixman-1-0_0.44.0-3_arm64.deb ... 968s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 968s Selecting previously unselected package libxcb-render0:arm64. 968s Preparing to unpack .../044-libxcb-render0_1.17.0-2_arm64.deb ... 968s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 968s Selecting previously unselected package libxcb-shm0:arm64. 968s Preparing to unpack .../045-libxcb-shm0_1.17.0-2_arm64.deb ... 968s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 968s Selecting previously unselected package libxrender1:arm64. 968s Preparing to unpack .../046-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 968s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 968s Selecting previously unselected package libcairo2:arm64. 968s Preparing to unpack .../047-libcairo2_1.18.2-2_arm64.deb ... 968s Unpacking libcairo2:arm64 (1.18.2-2) ... 968s Selecting previously unselected package libdatrie1:arm64. 968s Preparing to unpack .../048-libdatrie1_0.2.13-3build1_arm64.deb ... 968s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 968s Selecting previously unselected package libdeflate0:arm64. 968s Preparing to unpack .../049-libdeflate0_1.23-1_arm64.deb ... 968s Unpacking libdeflate0:arm64 (1.23-1) ... 968s Selecting previously unselected package libdeflate-dev:arm64. 968s Preparing to unpack .../050-libdeflate-dev_1.23-1_arm64.deb ... 968s Unpacking libdeflate-dev:arm64 (1.23-1) ... 968s Selecting previously unselected package libgraphite2-3:arm64. 968s Preparing to unpack .../051-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 968s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 968s Selecting previously unselected package libharfbuzz0b:arm64. 968s Preparing to unpack .../052-libharfbuzz0b_10.2.0-1_arm64.deb ... 968s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 968s Selecting previously unselected package x11-common. 968s Preparing to unpack .../053-x11-common_1%3a7.7+23ubuntu3_all.deb ... 968s Unpacking x11-common (1:7.7+23ubuntu3) ... 968s Selecting previously unselected package libice6:arm64. 968s Preparing to unpack .../054-libice6_2%3a1.1.1-1_arm64.deb ... 968s Unpacking libice6:arm64 (2:1.1.1-1) ... 968s Selecting previously unselected package libicu-dev:arm64. 968s Preparing to unpack .../055-libicu-dev_76.1-1ubuntu2_arm64.deb ... 968s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 969s Selecting previously unselected package libjpeg-turbo8:arm64. 969s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 969s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 969s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 969s Preparing to unpack .../057-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 969s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 969s Selecting previously unselected package libjpeg8:arm64. 969s Preparing to unpack .../058-libjpeg8_8c-2ubuntu11_arm64.deb ... 969s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 969s Selecting previously unselected package libjpeg8-dev:arm64. 969s Preparing to unpack .../059-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 969s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 969s Selecting previously unselected package libjpeg-dev:arm64. 969s Preparing to unpack .../060-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 969s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 969s Selecting previously unselected package liblapack3:arm64. 969s Preparing to unpack .../061-liblapack3_3.12.1-2_arm64.deb ... 969s Unpacking liblapack3:arm64 (3.12.1-2) ... 969s Selecting previously unselected package liblapack-dev:arm64. 969s Preparing to unpack .../062-liblapack-dev_3.12.1-2_arm64.deb ... 969s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 969s Selecting previously unselected package liblerc4:arm64. 969s Preparing to unpack .../063-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 969s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 969s Selecting previously unselected package libncurses-dev:arm64. 969s Preparing to unpack .../064-libncurses-dev_6.5+20250216-2_arm64.deb ... 969s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 969s Selecting previously unselected package libthai-data. 969s Preparing to unpack .../065-libthai-data_0.1.29-2build1_all.deb ... 969s Unpacking libthai-data (0.1.29-2build1) ... 969s Selecting previously unselected package libthai0:arm64. 969s Preparing to unpack .../066-libthai0_0.1.29-2build1_arm64.deb ... 969s Unpacking libthai0:arm64 (0.1.29-2build1) ... 969s Selecting previously unselected package libpango-1.0-0:arm64. 969s Preparing to unpack .../067-libpango-1.0-0_1.56.2-1_arm64.deb ... 969s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 969s Selecting previously unselected package libpangoft2-1.0-0:arm64. 969s Preparing to unpack .../068-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 969s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 969s Selecting previously unselected package libpangocairo-1.0-0:arm64. 969s Preparing to unpack .../069-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 969s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 969s Selecting previously unselected package libpaper2:arm64. 969s Preparing to unpack .../070-libpaper2_2.2.5-0.3_arm64.deb ... 969s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 969s Selecting previously unselected package libpaper-utils. 969s Preparing to unpack .../071-libpaper-utils_2.2.5-0.3_arm64.deb ... 969s Unpacking libpaper-utils (2.2.5-0.3) ... 969s Selecting previously unselected package libpcre2-16-0:arm64. 970s Preparing to unpack .../072-libpcre2-16-0_10.45-1_arm64.deb ... 970s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 970s Selecting previously unselected package libpcre2-32-0:arm64. 970s Preparing to unpack .../073-libpcre2-32-0_10.45-1_arm64.deb ... 970s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 970s Selecting previously unselected package libpcre2-posix3:arm64. 970s Preparing to unpack .../074-libpcre2-posix3_10.45-1_arm64.deb ... 970s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 970s Selecting previously unselected package libpcre2-dev:arm64. 970s Preparing to unpack .../075-libpcre2-dev_10.45-1_arm64.deb ... 970s Unpacking libpcre2-dev:arm64 (10.45-1) ... 970s Selecting previously unselected package libpkgconf3:arm64. 970s Preparing to unpack .../076-libpkgconf3_1.8.1-4_arm64.deb ... 970s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 970s Selecting previously unselected package zlib1g-dev:arm64. 970s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 970s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 970s Selecting previously unselected package libpng-dev:arm64. 970s Preparing to unpack .../078-libpng-dev_1.6.47-1_arm64.deb ... 970s Unpacking libpng-dev:arm64 (1.6.47-1) ... 970s Selecting previously unselected package libreadline-dev:arm64. 970s Preparing to unpack .../079-libreadline-dev_8.2-6_arm64.deb ... 970s Unpacking libreadline-dev:arm64 (8.2-6) ... 970s Selecting previously unselected package libsharpyuv0:arm64. 970s Preparing to unpack .../080-libsharpyuv0_1.5.0-0.1_arm64.deb ... 970s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 970s Selecting previously unselected package libsm6:arm64. 970s Preparing to unpack .../081-libsm6_2%3a1.2.4-1_arm64.deb ... 970s Unpacking libsm6:arm64 (2:1.2.4-1) ... 970s Selecting previously unselected package libtcl8.6:arm64. 970s Preparing to unpack .../082-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 970s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 970s Selecting previously unselected package libjbig0:arm64. 970s Preparing to unpack .../083-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 970s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 970s Selecting previously unselected package libwebp7:arm64. 970s Preparing to unpack .../084-libwebp7_1.5.0-0.1_arm64.deb ... 970s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 970s Selecting previously unselected package libtiff6:arm64. 970s Preparing to unpack .../085-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 970s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 970s Selecting previously unselected package libxft2:arm64. 970s Preparing to unpack .../086-libxft2_2.3.6-1build1_arm64.deb ... 970s Unpacking libxft2:arm64 (2.3.6-1build1) ... 970s Selecting previously unselected package libxss1:arm64. 970s Preparing to unpack .../087-libxss1_1%3a1.2.3-1build3_arm64.deb ... 970s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 970s Selecting previously unselected package libtk8.6:arm64. 970s Preparing to unpack .../088-libtk8.6_8.6.16-1_arm64.deb ... 970s Unpacking libtk8.6:arm64 (8.6.16-1) ... 970s Selecting previously unselected package libxt6t64:arm64. 970s Preparing to unpack .../089-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 970s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 970s Selecting previously unselected package zip. 970s Preparing to unpack .../090-zip_3.0-14ubuntu2_arm64.deb ... 970s Unpacking zip (3.0-14ubuntu2) ... 971s Selecting previously unselected package unzip. 971s Preparing to unpack .../091-unzip_6.0-28ubuntu6_arm64.deb ... 971s Unpacking unzip (6.0-28ubuntu6) ... 971s Selecting previously unselected package xdg-utils. 971s Preparing to unpack .../092-xdg-utils_1.2.1-2ubuntu1_all.deb ... 971s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 971s Selecting previously unselected package r-base-core. 971s Preparing to unpack .../093-r-base-core_4.4.3-1_arm64.deb ... 971s Unpacking r-base-core (4.4.3-1) ... 971s Selecting previously unselected package liblzma-dev:arm64. 971s Preparing to unpack .../094-liblzma-dev_5.6.4-1_arm64.deb ... 971s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 971s Selecting previously unselected package pkgconf-bin. 971s Preparing to unpack .../095-pkgconf-bin_1.8.1-4_arm64.deb ... 971s Unpacking pkgconf-bin (1.8.1-4) ... 971s Selecting previously unselected package pkgconf:arm64. 971s Preparing to unpack .../096-pkgconf_1.8.1-4_arm64.deb ... 971s Unpacking pkgconf:arm64 (1.8.1-4) ... 971s Selecting previously unselected package libtirpc-dev:arm64. 971s Preparing to unpack .../097-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 971s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 971s Selecting previously unselected package r-base-dev. 971s Preparing to unpack .../098-r-base-dev_4.4.3-1_all.deb ... 971s Unpacking r-base-dev (4.4.3-1) ... 971s Selecting previously unselected package pkg-r-autopkgtest. 971s Preparing to unpack .../099-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 971s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 971s Selecting previously unselected package r-bioc-biocgenerics. 971s Preparing to unpack .../100-r-bioc-biocgenerics_0.52.0-2_all.deb ... 971s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 971s Selecting previously unselected package r-bioc-biobase. 971s Preparing to unpack .../101-r-bioc-biobase_2.66.0-2_arm64.deb ... 971s Unpacking r-bioc-biobase (2.66.0-2) ... 971s Selecting previously unselected package r-bioc-s4vectors. 971s Preparing to unpack .../102-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 971s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 972s Selecting previously unselected package r-bioc-iranges. 972s Preparing to unpack .../103-r-bioc-iranges_2.40.1-2_arm64.deb ... 972s Unpacking r-bioc-iranges (2.40.1-2) ... 972s Selecting previously unselected package r-cran-dbi. 972s Preparing to unpack .../104-r-cran-dbi_1.2.3-1_all.deb ... 972s Unpacking r-cran-dbi (1.2.3-1) ... 972s Selecting previously unselected package r-cran-bit. 972s Preparing to unpack .../105-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 972s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 972s Selecting previously unselected package r-cran-bit64. 972s Preparing to unpack .../106-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 972s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 972s Selecting previously unselected package r-cran-rlang. 972s Preparing to unpack .../107-r-cran-rlang_1.1.5-1_arm64.deb ... 972s Unpacking r-cran-rlang (1.1.5-1) ... 972s Selecting previously unselected package r-cran-cli. 972s Preparing to unpack .../108-r-cran-cli_3.6.4-1_arm64.deb ... 972s Unpacking r-cran-cli (3.6.4-1) ... 972s Selecting previously unselected package r-cran-glue. 972s Preparing to unpack .../109-r-cran-glue_1.8.0-1_arm64.deb ... 972s Unpacking r-cran-glue (1.8.0-1) ... 972s Selecting previously unselected package r-cran-lifecycle. 972s Preparing to unpack .../110-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 972s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 972s Selecting previously unselected package r-cran-vctrs. 972s Preparing to unpack .../111-r-cran-vctrs_0.6.5-1_arm64.deb ... 972s Unpacking r-cran-vctrs (0.6.5-1) ... 972s Selecting previously unselected package r-cran-blob. 972s Preparing to unpack .../112-r-cran-blob_1.2.4-1_all.deb ... 972s Unpacking r-cran-blob (1.2.4-1) ... 972s Selecting previously unselected package r-cran-fastmap. 972s Preparing to unpack .../113-r-cran-fastmap_1.2.0-1_arm64.deb ... 972s Unpacking r-cran-fastmap (1.2.0-1) ... 972s Selecting previously unselected package r-cran-cachem. 972s Preparing to unpack .../114-r-cran-cachem_1.1.0-1_arm64.deb ... 972s Unpacking r-cran-cachem (1.1.0-1) ... 972s Selecting previously unselected package r-cran-memoise. 972s Preparing to unpack .../115-r-cran-memoise_2.0.1-1_all.deb ... 972s Unpacking r-cran-memoise (2.0.1-1) ... 972s Selecting previously unselected package r-cran-pkgconfig. 972s Preparing to unpack .../116-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 972s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 972s Selecting previously unselected package r-cran-plogr. 972s Preparing to unpack .../117-r-cran-plogr_0.2.0-3build1_all.deb ... 972s Unpacking r-cran-plogr (0.2.0-3build1) ... 972s Selecting previously unselected package r-cran-cpp11. 972s Preparing to unpack .../118-r-cran-cpp11_0.5.2-1_all.deb ... 972s Unpacking r-cran-cpp11 (0.5.2-1) ... 972s Selecting previously unselected package r-cran-rsqlite. 972s Preparing to unpack .../119-r-cran-rsqlite_2.3.9-1_arm64.deb ... 972s Unpacking r-cran-rsqlite (2.3.9-1) ... 973s Selecting previously unselected package r-cran-curl. 973s Preparing to unpack .../120-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 973s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 973s Selecting previously unselected package r-cran-jsonlite. 973s Preparing to unpack .../121-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 973s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 973s Selecting previously unselected package r-cran-mime. 973s Preparing to unpack .../122-r-cran-mime_0.12-2_arm64.deb ... 973s Unpacking r-cran-mime (0.12-2) ... 973s Selecting previously unselected package r-cran-sys. 973s Preparing to unpack .../123-r-cran-sys_3.4.3-1_arm64.deb ... 973s Unpacking r-cran-sys (3.4.3-1) ... 973s Selecting previously unselected package r-cran-askpass. 973s Preparing to unpack .../124-r-cran-askpass_1.2.1-1_arm64.deb ... 973s Unpacking r-cran-askpass (1.2.1-1) ... 973s Selecting previously unselected package r-cran-openssl. 973s Preparing to unpack .../125-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 973s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 973s Selecting previously unselected package r-cran-r6. 973s Preparing to unpack .../126-r-cran-r6_2.6.1-1_all.deb ... 973s Unpacking r-cran-r6 (2.6.1-1) ... 973s Selecting previously unselected package r-cran-httr. 973s Preparing to unpack .../127-r-cran-httr_1.4.7+dfsg-1_all.deb ... 973s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 973s Selecting previously unselected package r-cran-png. 973s Preparing to unpack .../128-r-cran-png_0.1-8-1build2_arm64.deb ... 973s Unpacking r-cran-png (0.1-8-1build2) ... 973s Selecting previously unselected package r-bioc-zlibbioc. 973s Preparing to unpack .../129-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 973s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 973s Selecting previously unselected package r-bioc-xvector. 973s Preparing to unpack .../130-r-bioc-xvector_0.46.0-2_arm64.deb ... 973s Unpacking r-bioc-xvector (0.46.0-2) ... 973s Selecting previously unselected package r-bioc-ucsc.utils. 973s Preparing to unpack .../131-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 973s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 973s Selecting previously unselected package r-bioc-genomeinfodbdata. 973s Preparing to unpack .../132-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 973s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 973s Selecting previously unselected package r-bioc-genomeinfodb. 973s Preparing to unpack .../133-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 973s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 973s Selecting previously unselected package r-cran-crayon. 973s Preparing to unpack .../134-r-cran-crayon_1.5.3-1_all.deb ... 973s Unpacking r-cran-crayon (1.5.3-1) ... 973s Selecting previously unselected package r-bioc-biostrings. 973s Preparing to unpack .../135-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 973s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 973s Selecting previously unselected package r-bioc-keggrest. 974s Preparing to unpack .../136-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 974s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 974s Selecting previously unselected package r-bioc-annotationdbi. 974s Preparing to unpack .../137-r-bioc-annotationdbi_1.68.0-2_all.deb ... 974s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 974s Selecting previously unselected package r-bioc-biocio. 974s Preparing to unpack .../138-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 974s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 974s Selecting previously unselected package r-cran-formatr. 974s Preparing to unpack .../139-r-cran-formatr_1.14-2_all.deb ... 974s Unpacking r-cran-formatr (1.14-2) ... 974s Selecting previously unselected package r-cran-lambda.r. 974s Preparing to unpack .../140-r-cran-lambda.r_1.2.4-2build1_all.deb ... 974s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 974s Selecting previously unselected package r-cran-futile.options. 974s Preparing to unpack .../141-r-cran-futile.options_1.0.1-3build1_all.deb ... 974s Unpacking r-cran-futile.options (1.0.1-3build1) ... 974s Selecting previously unselected package r-cran-futile.logger. 974s Preparing to unpack .../142-r-cran-futile.logger_1.4.3-4build1_all.deb ... 974s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 974s Selecting previously unselected package r-cran-snow. 974s Preparing to unpack .../143-r-cran-snow_1%3a0.4.4-2_all.deb ... 974s Unpacking r-cran-snow (1:0.4.4-2) ... 974s Selecting previously unselected package r-cran-codetools. 974s Preparing to unpack .../144-r-cran-codetools_0.2-20-1_all.deb ... 974s Unpacking r-cran-codetools (0.2-20-1) ... 974s Selecting previously unselected package r-cran-bh. 974s Preparing to unpack .../145-r-cran-bh_1.84.0-1_all.deb ... 974s Unpacking r-cran-bh (1.84.0-1) ... 974s Selecting previously unselected package r-bioc-biocparallel. 974s Preparing to unpack .../146-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 974s Unpacking r-bioc-biocparallel (1.40.0-2) ... 974s Selecting previously unselected package r-bioc-genomicranges. 974s Preparing to unpack .../147-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 974s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 974s Selecting previously unselected package r-cran-xml. 974s Preparing to unpack .../148-r-cran-xml_3.99-0.18-1_arm64.deb ... 974s Unpacking r-cran-xml (3.99-0.18-1) ... 974s Selecting previously unselected package r-cran-bitops. 974s Preparing to unpack .../149-r-cran-bitops_1.0-9-1_arm64.deb ... 974s Unpacking r-cran-bitops (1.0-9-1) ... 974s Selecting previously unselected package r-bioc-rhtslib. 974s Preparing to unpack .../150-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 974s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 975s Selecting previously unselected package r-bioc-rsamtools. 975s Preparing to unpack .../151-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 975s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 975s Selecting previously unselected package r-cran-matrixstats. 975s Preparing to unpack .../152-r-cran-matrixstats_1.5.0-1_arm64.deb ... 975s Unpacking r-cran-matrixstats (1.5.0-1) ... 975s Selecting previously unselected package r-bioc-matrixgenerics. 975s Preparing to unpack .../153-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 975s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 975s Selecting previously unselected package r-cran-lattice. 975s Preparing to unpack .../154-r-cran-lattice_0.22-6-1_arm64.deb ... 975s Unpacking r-cran-lattice (0.22-6-1) ... 975s Selecting previously unselected package r-cran-matrix. 975s Preparing to unpack .../155-r-cran-matrix_1.7-3-1_arm64.deb ... 975s Unpacking r-cran-matrix (1.7-3-1) ... 975s Selecting previously unselected package r-cran-abind. 975s Preparing to unpack .../156-r-cran-abind_1.4-8-1_all.deb ... 975s Unpacking r-cran-abind (1.4-8-1) ... 975s Selecting previously unselected package r-bioc-s4arrays. 975s Preparing to unpack .../157-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 975s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 975s Selecting previously unselected package r-bioc-sparsearray. 975s Preparing to unpack .../158-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 975s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 975s Selecting previously unselected package r-bioc-delayedarray. 975s Preparing to unpack .../159-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 975s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 975s Selecting previously unselected package r-bioc-summarizedexperiment. 975s Preparing to unpack .../160-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 975s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 975s Selecting previously unselected package r-bioc-genomicalignments. 975s Preparing to unpack .../161-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 975s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 975s Selecting previously unselected package r-cran-rcurl. 975s Preparing to unpack .../162-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 975s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 976s Selecting previously unselected package r-cran-rjson. 976s Preparing to unpack .../163-r-cran-rjson_0.2.23-1_arm64.deb ... 976s Unpacking r-cran-rjson (0.2.23-1) ... 976s Selecting previously unselected package r-cran-yaml. 976s Preparing to unpack .../164-r-cran-yaml_2.3.10-1_arm64.deb ... 976s Unpacking r-cran-yaml (2.3.10-1) ... 976s Selecting previously unselected package r-cran-restfulr. 976s Preparing to unpack .../165-r-cran-restfulr_0.0.15-1_arm64.deb ... 976s Unpacking r-cran-restfulr (0.0.15-1) ... 976s Selecting previously unselected package r-bioc-rtracklayer. 976s Preparing to unpack .../166-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 976s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 976s Selecting previously unselected package r-bioc-bsgenome. 976s Preparing to unpack .../167-r-bioc-bsgenome_1.74.0-2_all.deb ... 976s Unpacking r-bioc-bsgenome (1.74.0-2) ... 976s Selecting previously unselected package r-bioc-genomicfeatures. 976s Preparing to unpack .../168-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 976s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 976s Selecting previously unselected package r-bioc-variantannotation. 976s Preparing to unpack .../169-r-bioc-variantannotation_1.52.0-2_arm64.deb ... 976s Unpacking r-bioc-variantannotation (1.52.0-2) ... 976s Selecting previously unselected package r-cran-iterators. 976s Preparing to unpack .../170-r-cran-iterators_1.0.14-1_all.deb ... 976s Unpacking r-cran-iterators (1.0.14-1) ... 976s Selecting previously unselected package r-cran-foreach. 976s Preparing to unpack .../171-r-cran-foreach_1.5.2-1_all.deb ... 976s Unpacking r-cran-foreach (1.5.2-1) ... 976s Selecting previously unselected package r-cran-data.table. 976s Preparing to unpack .../172-r-cran-data.table_1.17.0+dfsg-1_arm64.deb ... 976s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 976s Selecting previously unselected package r-cran-generics. 976s Preparing to unpack .../173-r-cran-generics_0.1.3-1_all.deb ... 976s Unpacking r-cran-generics (0.1.3-1) ... 976s Selecting previously unselected package r-cran-magrittr. 976s Preparing to unpack .../174-r-cran-magrittr_2.0.3-1_arm64.deb ... 976s Unpacking r-cran-magrittr (2.0.3-1) ... 976s Selecting previously unselected package r-cran-utf8. 976s Preparing to unpack .../175-r-cran-utf8_1.2.4-1_arm64.deb ... 976s Unpacking r-cran-utf8 (1.2.4-1) ... 976s Selecting previously unselected package r-cran-pillar. 976s Preparing to unpack .../176-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 976s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 976s Selecting previously unselected package r-cran-fansi. 976s Preparing to unpack .../177-r-cran-fansi_1.0.5-1_arm64.deb ... 976s Unpacking r-cran-fansi (1.0.5-1) ... 977s Selecting previously unselected package r-cran-tibble. 977s Preparing to unpack .../178-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 977s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 977s Selecting previously unselected package r-cran-withr. 977s Preparing to unpack .../179-r-cran-withr_3.0.2+dfsg-1_all.deb ... 977s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 977s Selecting previously unselected package r-cran-tidyselect. 977s Preparing to unpack .../180-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 977s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 977s Selecting previously unselected package r-cran-dplyr. 977s Preparing to unpack .../181-r-cran-dplyr_1.1.4-4_arm64.deb ... 977s Unpacking r-cran-dplyr (1.1.4-4) ... 977s Selecting previously unselected package r-bioc-titancna. 977s Preparing to unpack .../182-r-bioc-titancna_1.44.0-2_arm64.deb ... 977s Unpacking r-bioc-titancna (1.44.0-2) ... 977s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 977s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 977s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 977s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 977s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 977s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 977s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 977s Setting up libxcb-render0:arm64 (1.17.0-2) ... 977s Setting up unzip (6.0-28ubuntu6) ... 977s Setting up x11-common (1:7.7+23ubuntu3) ... 977s Setting up libdeflate0:arm64 (1.23-1) ... 977s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 977s Setting up libreadline-dev:arm64 (8.2-6) ... 977s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 977s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 977s Setting up libpcre2-16-0:arm64 (10.45-1) ... 977s Setting up zip (3.0-14ubuntu2) ... 977s Setting up libpcre2-32-0:arm64 (10.45-1) ... 977s Setting up libblas3:arm64 (3.12.1-2) ... 977s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 977s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 977s Setting up libpkgconf3:arm64 (1.8.1-4) ... 977s Setting up fonts-dejavu-mono (2.37-8) ... 977s Setting up libmpc3:arm64 (1.3.1-1build2) ... 977s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 977s Setting up icu-devtools (76.1-1ubuntu2) ... 977s Setting up fonts-dejavu-core (2.37-8) ... 977s Setting up pkgconf-bin (1.8.1-4) ... 977s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 977s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 977s Setting up libwebp7:arm64 (1.5.0-0.1) ... 977s Setting up liblzma-dev:arm64 (5.6.4-1) ... 977s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 977s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 977s Setting up libpcre2-posix3:arm64 (10.45-1) ... 977s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 977s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 977s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 977s Setting up libthai-data (0.1.29-2build1) ... 977s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 977s Setting up libpaper2:arm64 (2.2.5-0.3) ... 978s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 978s Setting up libisl23:arm64 (0.27-1) ... 978s Setting up libdeflate-dev:arm64 (1.23-1) ... 978s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 978s Setting up xdg-utils (1.2.1-2ubuntu1) ... 978s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 978s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 978s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 978s Setting up libblas-dev:arm64 (3.12.1-2) ... 978s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 978s Setting up dctrl-tools (2.24-3build3) ... 978s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 978s Setting up libbz2-dev:arm64 (1.0.8-6) ... 978s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 978s Setting up libice6:arm64 (2:1.1.1-1) ... 978s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 978s Setting up liblapack3:arm64 (3.12.1-2) ... 978s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 978s Setting up libpcre2-dev:arm64 (10.45-1) ... 978s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 978s Setting up libpng-dev:arm64 (1.6.47-1) ... 978s Setting up libpaper-utils (2.2.5-0.3) ... 978s Setting up pkgconf:arm64 (1.8.1-4) ... 978s Setting up libthai0:arm64 (0.1.29-2build1) ... 978s Setting up liblapack-dev:arm64 (3.12.1-2) ... 978s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 978s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 978s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 978s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 978s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 978s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 978s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 978s Setting up libsm6:arm64 (2:1.2.4-1) ... 978s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 978s Setting up fontconfig (2.15.0-2ubuntu1) ... 980s Regenerating fonts cache... done. 980s Setting up libxft2:arm64 (2.3.6-1build1) ... 980s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 980s Setting up libtk8.6:arm64 (8.6.16-1) ... 980s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 980s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 980s Setting up libcairo2:arm64 (1.18.2-2) ... 980s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 980s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 980s Setting up cpp-14 (14.2.0-17ubuntu3) ... 980s Setting up cpp (4:14.2.0-1ubuntu1) ... 980s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 980s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 980s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 980s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 980s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 980s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 980s Setting up gcc-14 (14.2.0-17ubuntu3) ... 980s Setting up r-base-core (4.4.3-1) ... 980s Creating config file /etc/R/Renviron with new version 980s Setting up r-cran-crayon (1.5.3-1) ... 980s Setting up r-cran-futile.options (1.0.1-3build1) ... 980s Setting up r-cran-lattice (0.22-6-1) ... 980s Setting up r-cran-formatr (1.14-2) ... 980s Setting up r-cran-xml (3.99-0.18-1) ... 980s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 980s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 980s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 980s Setting up g++-14 (14.2.0-17ubuntu3) ... 980s Setting up r-cran-rjson (0.2.23-1) ... 980s Setting up r-cran-r6 (2.6.1-1) ... 980s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 980s Setting up r-cran-magrittr (2.0.3-1) ... 980s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 980s Setting up r-cran-bh (1.84.0-1) ... 980s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 980s Setting up r-cran-codetools (0.2-20-1) ... 980s Setting up r-bioc-biocgenerics (0.52.0-2) ... 980s Setting up r-cran-rlang (1.1.5-1) ... 980s Setting up r-cran-matrixstats (1.5.0-1) ... 980s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 980s Setting up r-cran-sys (3.4.3-1) ... 980s Setting up r-cran-plogr (0.2.0-3build1) ... 980s Setting up r-cran-withr (3.0.2+dfsg-1) ... 980s Setting up r-cran-mime (0.12-2) ... 980s Setting up r-cran-generics (0.1.3-1) ... 980s Setting up r-cran-iterators (1.0.14-1) ... 980s Setting up r-cran-abind (1.4-8-1) ... 980s Setting up r-cran-yaml (2.3.10-1) ... 980s Setting up r-cran-lambda.r (1.2.4-2build1) ... 980s Setting up r-cran-dbi (1.2.3-1) ... 980s Setting up r-cran-foreach (1.5.2-1) ... 980s Setting up r-cran-fansi (1.0.5-1) ... 980s Setting up r-cran-snow (1:0.4.4-2) ... 980s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 980s Setting up r-cran-glue (1.8.0-1) ... 980s Setting up r-cran-bit (4.6.0+dfsg-1) ... 980s Setting up r-cran-cli (3.6.4-1) ... 980s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 980s Setting up r-cran-bitops (1.0-9-1) ... 980s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 980s Setting up gcc (4:14.2.0-1ubuntu1) ... 980s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 980s Setting up r-cran-askpass (1.2.1-1) ... 980s Setting up r-cran-fastmap (1.2.0-1) ... 980s Setting up r-cran-png (0.1-8-1build2) ... 980s Setting up r-bioc-biobase (2.66.0-2) ... 980s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 980s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 980s Setting up r-cran-utf8 (1.2.4-1) ... 980s Setting up r-cran-cpp11 (0.5.2-1) ... 980s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 980s Setting up r-cran-futile.logger (1.4.3-4build1) ... 980s Setting up r-cran-matrix (1.7-3-1) ... 980s Setting up g++ (4:14.2.0-1ubuntu1) ... 980s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 980s Setting up r-cran-cachem (1.1.0-1) ... 980s Setting up build-essential (12.10ubuntu1) ... 980s Setting up r-bioc-iranges (2.40.1-2) ... 980s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 980s Setting up r-cran-restfulr (0.0.15-1) ... 980s Setting up r-cran-vctrs (0.6.5-1) ... 980s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 980s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 980s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 980s Setting up r-bioc-biocparallel (1.40.0-2) ... 980s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 980s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 980s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 980s Setting up gfortran (4:14.2.0-1ubuntu1) ... 980s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 980s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 980s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 980s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 980s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 980s Setting up r-cran-httr (1.4.7+dfsg-1) ... 980s Setting up r-cran-memoise (2.0.1-1) ... 980s Setting up r-cran-blob (1.2.4-1) ... 980s Setting up r-bioc-xvector (0.46.0-2) ... 980s Setting up r-cran-dplyr (1.1.4-4) ... 980s Setting up r-cran-rsqlite (2.3.9-1) ... 980s Setting up r-base-dev (4.4.3-1) ... 980s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 980s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 980s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 980s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 980s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 980s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 980s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 980s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 980s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 980s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 980s Setting up r-bioc-annotationdbi (1.68.0-2) ... 980s Setting up r-bioc-genomicalignments (1.42.0-2) ... 980s Setting up r-bioc-rtracklayer (1.66.0-2) ... 980s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 980s Setting up r-bioc-bsgenome (1.74.0-2) ... 980s Setting up r-bioc-variantannotation (1.52.0-2) ... 980s Setting up r-bioc-titancna (1.44.0-2) ... 980s Processing triggers for libc-bin (2.41-1ubuntu2) ... 980s Processing triggers for man-db (2.13.0-1) ... 983s Processing triggers for install-info (7.1.1-1) ... 984s autopkgtest [15:28:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 984s autopkgtest [15:28:23]: test pkg-r-autopkgtest: [----------------------- 984s Test: Try to load the R library TitanCNA 985s 985s R version 4.4.3 (2025-02-28) -- "Trophy Case" 985s Copyright (C) 2025 The R Foundation for Statistical Computing 985s Platform: aarch64-unknown-linux-gnu 985s 985s R is free software and comes with ABSOLUTELY NO WARRANTY. 985s You are welcome to redistribute it under certain conditions. 985s Type 'license()' or 'licence()' for distribution details. 985s 985s R is a collaborative project with many contributors. 985s Type 'contributors()' for more information and 985s 'citation()' on how to cite R or R packages in publications. 985s 985s Type 'demo()' for some demos, 'help()' for on-line help, or 985s 'help.start()' for an HTML browser interface to help. 985s Type 'q()' to quit R. 985s 985s > library('TitanCNA') 997s There were 12 warnings (use warnings() to see them)> 997s > 997s 997s Other tests are currently unsupported! 997s They will be progressively added. 997s autopkgtest [15:28:36]: test pkg-r-autopkgtest: -----------------------] 998s pkg-r-autopkgtest PASS 998s autopkgtest [15:28:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 999s autopkgtest [15:28:38]: @@@@@@@@@@@@@@@@@@@@ summary 999s pkg-r-autopkgtest PASS 1017s nova [W] Using flock in prodstack6-arm64 1017s Creating nova instance adt-plucky-arm64-r-bioc-titancna-20250315-151158-juju-7f2275-prod-proposed-migration-environment-15-d8d22a8b-5d55-4e1b-a5e5-c2f927b0c360 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 1017s nova [W] Timed out waiting for 61523b2e-3468-44b6-b7a6-1e6d4c494665 to get deleted.