0s autopkgtest [15:10:33]: starting date and time: 2025-03-15 15:10:33+0000
  0s autopkgtest [15:10:33]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:10:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.50dz78es/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-34.secgroup --name adt-plucky-arm64-r-bioc-shortread-20250315-151032-juju-7f2275-prod-proposed-migration-environment-2-67f9d948-b42b-49be-bc90-17fe2a22d436 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
168s autopkgtest [15:13:21]: testbed dpkg architecture: arm64
168s autopkgtest [15:13:21]: testbed apt version: 2.9.33
168s autopkgtest [15:13:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup
169s autopkgtest [15:13:22]: testbed release detected to be: None
169s autopkgtest [15:13:22]: updating testbed package index (apt update)
170s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
170s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
170s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
170s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
170s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
170s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
171s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
171s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
171s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
171s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
171s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
171s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
171s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
171s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
172s Fetched 1094 kB in 2s (680 kB/s)
172s Reading package lists...
173s Reading package lists...
173s Building dependency tree...
173s Reading state information...
174s Calculating upgrade...
174s Calculating upgrade...
174s The following packages will be upgraded:
174s   python3-jinja2 strace
175s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
175s Need to get 608 kB of archives.
175s After this operation, 11.3 kB of additional disk space will be used.
175s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
175s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
176s Fetched 608 kB in 1s (700 kB/s)
176s (Reading database ... 
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(Reading database ... 117701 files and directories currently installed.)
176s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
176s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
176s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
176s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
176s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
177s Setting up strace (6.13+ds-1ubuntu1) ...
177s Processing triggers for man-db (2.13.0-1) ...
177s Reading package lists...
178s Building dependency tree...
178s Reading state information...
178s Solving dependencies...
178s The following packages will be REMOVED:
178s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
178s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
178s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
178s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
179s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
179s After this operation, 267 MB disk space will be freed.
179s (Reading database ... 
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(Reading database ... 117701 files and directories currently installed.)
179s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
179s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
179s Removing libpython3.12t64:arm64 (3.12.9-1) ...
179s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
179s Removing libnsl2:arm64 (1.3.0-3build3) ...
179s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
179s Removing libunwind8:arm64 (1.6.2-3.1) ...
179s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
179s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
181s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
182s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
182s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
182s /etc/kernel/postrm.d/initramfs-tools:
182s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
182s /etc/kernel/postrm.d/zz-flash-kernel:
182s flash-kernel: Kernel 6.11.0-8-generic has been removed.
182s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
182s /etc/kernel/postrm.d/zz-update-grub:
182s Sourcing file `/etc/default/grub'
182s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
182s Generating grub configuration file ...
183s Found linux image: /boot/vmlinuz-6.14.0-10-generic
183s Found initrd image: /boot/initrd.img-6.14.0-10-generic
183s Warning: os-prober will not be executed to detect other bootable partitions.
183s Systems on them will not be added to the GRUB boot configuration.
183s Check GRUB_DISABLE_OS_PROBER documentation entry.
183s Adding boot menu entry for UEFI Firmware Settings ...
183s done
183s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
184s Processing triggers for libc-bin (2.41-1ubuntu1) ...
184s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 81650 files and directories currently installed.)
184s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
184s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
184s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
184s autopkgtest [15:13:37]: upgrading testbed (apt dist-upgrade and autopurge)
184s Reading package lists...
185s Building dependency tree...
185s Reading state information...
185s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
186s Starting 2 pkgProblemResolver with broken count: 0
186s Done
186s Entering ResolveByKeep
187s 
187s Calculating upgrade...
188s The following packages will be upgraded:
188s   libc-bin libc-dev-bin libc6 libc6-dev locales
188s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
188s Need to get 9530 kB of archives.
188s After this operation, 0 B of additional disk space will be used.
188s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
190s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
190s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
192s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
193s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
197s Preconfiguring packages ...
197s Fetched 9530 kB in 9s (1075 kB/s)
197s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
197s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
197s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
197s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
197s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
197s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
198s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Setting up libc6:arm64 (2.41-1ubuntu2) ...
198s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 81647 files and directories currently installed.)
198s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
198s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Setting up libc-bin (2.41-1ubuntu2) ...
198s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
198s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
198s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
199s Setting up locales (2.41-1ubuntu2) ...
199s Generating locales (this might take a while)...
201s   en_US.UTF-8... done
201s Generation complete.
201s Setting up libc-dev-bin (2.41-1ubuntu2) ...
201s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
201s Processing triggers for man-db (2.13.0-1) ...
202s Processing triggers for systemd (257.3-1ubuntu3) ...
203s Reading package lists...
204s Building dependency tree...
204s Reading state information...
204s Starting pkgProblemResolver with broken count: 0
205s Starting 2 pkgProblemResolver with broken count: 0
205s Done
205s Solving dependencies...
205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
206s autopkgtest [15:13:59]: rebooting testbed after setup commands that affected boot
229s autopkgtest [15:14:22]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
232s autopkgtest [15:14:25]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread
238s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (dsc) [2409 B]
238s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (tar) [5321 kB]
238s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-shortread 1.64.0-3 (diff) [6160 B]
239s gpgv: Signature made Mon Jan 27 12:34:30 2025 UTC
239s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
239s gpgv:                issuer "crusoe@debian.org"
239s gpgv: Can't check signature: No public key
239s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.64.0-3.dsc: no acceptable signature found
239s autopkgtest [15:14:32]: testing package r-bioc-shortread version 1.64.0-3
241s autopkgtest [15:14:34]: build not needed
248s autopkgtest [15:14:41]: test pkg-r-autopkgtest: preparing testbed
248s Reading package lists...
248s Building dependency tree...
248s Reading state information...
249s Starting pkgProblemResolver with broken count: 0
249s Starting 2 pkgProblemResolver with broken count: 0
249s Done
251s The following NEW packages will be installed:
251s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
251s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
251s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
251s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
251s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
251s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
251s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
251s   libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1
251s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
251s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
251s   libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev
251s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
251s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
251s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
251s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
251s   libjs-popper.js libjs-prettify libjs-sifter.js
251s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
251s   liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3
251s   libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
251s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
251s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1
251s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
251s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
251s   libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
251s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64
251s   littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc
251s   pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
251s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
251s   r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion
251s   r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb
251s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
251s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
251s   r-bioc-pwalign r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
251s   r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray
251s   r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc
251s   r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager
251s   r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown
251s   r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark
251s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr
251s   r-cran-deldir r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi
251s   r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
251s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue
251s   r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr
251s   r-cran-httr2 r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib
251s   r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice
251s   r-cran-latticeextra r-cran-lifecycle r-cran-littler r-cran-magrittr
251s   r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
251s   r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
251s   r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr
251s   r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
251s   r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown
251s   r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow
251s   r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
251s   r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs
251s   r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml
251s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
251s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
251s 0 upgraded, 281 newly installed, 0 to remove and 0 not upgraded.
251s Need to get 427 MB of archives.
251s After this operation, 1350 MB of additional disk space will be used.
251s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
252s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
252s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
260s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
260s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
260s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
260s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
260s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
260s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
260s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
263s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
264s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
267s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
268s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
270s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
273s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
290s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
290s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
290s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
290s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
292s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
304s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
304s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
304s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
304s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
304s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
304s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
304s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
305s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
305s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
305s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
306s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
306s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
306s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
311s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
314s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
314s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
314s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
324s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
324s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
324s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
324s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
324s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B]
324s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
324s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB]
324s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
324s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
324s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
324s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB]
332s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B]
332s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
333s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
333s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
333s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
333s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
333s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
333s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
333s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
333s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
333s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
333s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
334s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
334s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
334s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
343s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
343s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
343s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
343s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
343s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
343s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
343s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
343s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
343s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
343s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
343s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
344s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
344s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
344s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
344s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
344s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
344s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
344s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
344s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
344s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
344s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB]
344s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
346s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
349s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
349s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB]
349s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB]
349s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
349s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
349s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
349s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
350s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
350s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
350s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
350s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
350s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
350s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
350s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
350s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
351s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
351s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
352s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
352s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB]
352s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB]
352s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
352s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
352s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
352s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB]
352s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
353s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
353s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB]
353s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
353s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
353s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
353s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
353s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
353s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
354s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
354s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB]
354s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB]
354s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB]
354s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB]
354s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB]
354s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
354s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
354s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
354s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
373s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
373s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
373s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
373s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
373s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
373s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB]
373s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB]
386s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
386s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
386s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
386s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
386s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
386s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
386s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
386s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
387s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB]
387s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB]
388s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB]
388s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB]
389s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB]
389s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
389s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
390s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
390s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
390s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
390s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
390s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB]
390s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB]
390s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
390s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
390s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
390s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB]
390s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB]
391s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB]
391s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
391s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB]
391s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB]
391s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB]
391s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB]
391s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
391s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
391s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB]
391s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
391s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB]
392s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
392s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
396s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
397s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
397s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB]
402s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB]
402s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
404s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB]
404s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
404s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
404s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
404s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
405s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB]
405s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
405s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB]
405s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB]
405s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB]
406s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB]
406s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
406s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB]
407s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB]
408s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB]
408s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
409s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
409s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB]
409s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
409s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
409s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
409s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
409s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB]
410s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
410s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB]
411s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
411s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
411s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB]
411s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
412s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB]
412s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB]
412s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB]
412s Get:214 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
416s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB]
417s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
417s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
417s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
417s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB]
418s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
422s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB]
424s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB]
424s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB]
424s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
424s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
425s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB]
426s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB]
426s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB]
426s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
427s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
427s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB]
427s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
427s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
430s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
431s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
432s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
432s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB]
432s Get:238 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB]
432s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB]
438s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB]
448s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB]
449s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
464s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB]
464s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
464s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB]
464s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB]
464s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB]
464s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr2 all 1.1.1-1 [752 kB]
464s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml2 arm64 1.3.7-1 [327 kB]
464s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB]
464s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
465s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
465s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB]
465s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
465s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB]
465s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB]
465s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB]
466s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB]
466s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB]
466s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
466s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB]
466s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB]
467s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB]
467s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB]
467s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB]
468s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB]
468s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB]
468s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB]
468s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB]
468s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
468s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-pwalign arm64 1.2.0-2 [752 kB]
468s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
469s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB]
469s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
469s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB]
469s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB]
469s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB]
469s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
469s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB]
469s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-shortread arm64 1.64.0-3 [5243 kB]
470s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB]
471s Preconfiguring packages ...
471s Fetched 427 MB in 3min 39s (1950 kB/s)
471s Selecting previously unselected package libisl23:arm64.
471s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
471s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
471s Unpacking libisl23:arm64 (0.27-1) ...
472s Selecting previously unselected package libmpc3:arm64.
472s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
472s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
472s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
472s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
472s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
472s Selecting previously unselected package cpp-14.
472s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
472s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
472s Selecting previously unselected package cpp-aarch64-linux-gnu.
472s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
472s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
472s Selecting previously unselected package cpp.
472s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
472s Unpacking cpp (4:14.2.0-1ubuntu1) ...
472s Selecting previously unselected package libcc1-0:arm64.
472s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
472s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
472s Selecting previously unselected package libgomp1:arm64.
472s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ...
472s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ...
472s Selecting previously unselected package libitm1:arm64.
472s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ...
472s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
472s Selecting previously unselected package libasan8:arm64.
472s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ...
472s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
472s Selecting previously unselected package liblsan0:arm64.
472s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
472s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
473s Selecting previously unselected package libtsan2:arm64.
473s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
473s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
473s Selecting previously unselected package libubsan1:arm64.
473s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
473s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
473s Selecting previously unselected package libhwasan0:arm64.
473s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
473s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
473s Selecting previously unselected package libgcc-14-dev:arm64.
473s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
473s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
473s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
473s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
473s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
474s Selecting previously unselected package gcc-14.
474s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
474s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
474s Selecting previously unselected package gcc-aarch64-linux-gnu.
474s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
474s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
474s Selecting previously unselected package gcc.
474s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
474s Unpacking gcc (4:14.2.0-1ubuntu1) ...
474s Selecting previously unselected package libstdc++-14-dev:arm64.
474s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
474s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
474s Selecting previously unselected package g++-14-aarch64-linux-gnu.
474s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
474s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
474s Selecting previously unselected package g++-14.
474s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
474s Unpacking g++-14 (14.2.0-17ubuntu3) ...
474s Selecting previously unselected package g++-aarch64-linux-gnu.
474s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
474s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
474s Selecting previously unselected package g++.
474s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
474s Unpacking g++ (4:14.2.0-1ubuntu1) ...
474s Selecting previously unselected package build-essential.
474s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ...
474s Unpacking build-essential (12.10ubuntu1) ...
475s Selecting previously unselected package dctrl-tools.
475s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ...
475s Unpacking dctrl-tools (2.24-3build3) ...
475s Selecting previously unselected package fonts-dejavu-mono.
475s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ...
475s Unpacking fonts-dejavu-mono (2.37-8) ...
475s Selecting previously unselected package fonts-dejavu-core.
475s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ...
475s Unpacking fonts-dejavu-core (2.37-8) ...
475s Selecting previously unselected package fontconfig-config.
475s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
475s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
475s Selecting previously unselected package libfontconfig1:arm64.
475s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
475s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
475s Selecting previously unselected package fontconfig.
475s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
475s Unpacking fontconfig (2.15.0-2ubuntu1) ...
475s Selecting previously unselected package fonts-font-awesome.
475s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
475s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
475s Selecting previously unselected package fonts-glyphicons-halflings.
475s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
475s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
476s Selecting previously unselected package fonts-lmodern.
476s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ...
476s Unpacking fonts-lmodern (2.005-1) ...
476s Selecting previously unselected package fonts-mathjax.
476s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
476s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
476s Selecting previously unselected package libgfortran5:arm64.
476s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
476s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
476s Selecting previously unselected package libgfortran-14-dev:arm64.
476s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
476s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
476s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
476s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
476s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
476s Selecting previously unselected package gfortran-14.
476s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
476s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
476s Selecting previously unselected package gfortran-aarch64-linux-gnu.
477s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
477s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
477s Selecting previously unselected package gfortran.
477s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
477s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
477s Selecting previously unselected package icu-devtools.
477s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ...
477s Unpacking icu-devtools (76.1-1ubuntu2) ...
477s Selecting previously unselected package javascript-common.
477s Preparing to unpack .../042-javascript-common_12_all.deb ...
477s Unpacking javascript-common (12) ...
477s Selecting previously unselected package libio-string-perl.
477s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ...
477s Unpacking libio-string-perl (1.08-4) ...
477s Selecting previously unselected package liblatex-tounicode-perl.
477s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ...
477s Unpacking liblatex-tounicode-perl (0.55-1) ...
477s Selecting previously unselected package libbibtex-parser-perl.
477s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
477s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
477s Selecting previously unselected package libblas3:arm64.
477s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ...
477s Unpacking libblas3:arm64 (3.12.1-2) ...
477s Selecting previously unselected package libblas-dev:arm64.
477s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ...
477s Unpacking libblas-dev:arm64 (3.12.1-2) ...
477s Selecting previously unselected package libboost1.83-dev:arm64.
477s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ...
477s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ...
479s Selecting previously unselected package libboost-dev:arm64.
479s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ...
479s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ...
479s Selecting previously unselected package libbz2-dev:arm64.
479s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ...
479s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
479s Selecting previously unselected package libpixman-1-0:arm64.
480s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ...
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490s Selecting previously unselected package r-bioc-biocgenerics.
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490s Selecting previously unselected package r-cran-dbi.
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490s Selecting previously unselected package r-cran-rlang.
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490s Selecting previously unselected package r-cran-cli.
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491s Selecting previously unselected package r-cran-blob.
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491s Unpacking r-cran-blob (1.2.4-1) ...
491s Selecting previously unselected package r-cran-fastmap.
491s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_arm64.deb ...
491s Unpacking r-cran-fastmap (1.2.0-1) ...
491s Selecting previously unselected package r-cran-cachem.
491s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_arm64.deb ...
491s Unpacking r-cran-cachem (1.1.0-1) ...
491s Selecting previously unselected package r-cran-memoise.
491s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ...
491s Unpacking r-cran-memoise (2.0.1-1) ...
491s Selecting previously unselected package r-cran-pkgconfig.
491s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
491s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
491s Selecting previously unselected package r-cran-plogr.
491s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ...
491s Unpacking r-cran-plogr (0.2.0-3build1) ...
491s Selecting previously unselected package r-cran-cpp11.
491s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ...
491s Unpacking r-cran-cpp11 (0.5.2-1) ...
491s Selecting previously unselected package r-cran-rsqlite.
491s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_arm64.deb ...
491s Unpacking r-cran-rsqlite (2.3.9-1) ...
491s Selecting previously unselected package r-cran-curl.
491s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ...
491s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
492s Selecting previously unselected package r-cran-jsonlite.
492s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ...
492s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
492s Selecting previously unselected package r-cran-mime.
492s Preparing to unpack .../165-r-cran-mime_0.12-2_arm64.deb ...
492s Unpacking r-cran-mime (0.12-2) ...
492s Selecting previously unselected package r-cran-sys.
492s Preparing to unpack .../166-r-cran-sys_3.4.3-1_arm64.deb ...
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492s Selecting previously unselected package r-cran-askpass.
492s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_arm64.deb ...
492s Unpacking r-cran-askpass (1.2.1-1) ...
492s Selecting previously unselected package r-cran-openssl.
492s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ...
492s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
492s Selecting previously unselected package r-cran-r6.
492s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ...
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492s Selecting previously unselected package r-cran-httr.
492s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ...
492s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
492s Selecting previously unselected package r-cran-png.
492s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_arm64.deb ...
492s Unpacking r-cran-png (0.1-8-1build2) ...
492s Selecting previously unselected package r-bioc-zlibbioc.
492s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
492s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
492s Selecting previously unselected package r-bioc-xvector.
492s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ...
492s Unpacking r-bioc-xvector (0.46.0-2) ...
492s Selecting previously unselected package r-bioc-ucsc.utils.
492s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
492s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
492s Selecting previously unselected package r-bioc-genomeinfodbdata.
492s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
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493s Selecting previously unselected package r-bioc-genomeinfodb.
493s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
493s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
493s Selecting previously unselected package r-cran-crayon.
493s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ...
493s Unpacking r-cran-crayon (1.5.3-1) ...
493s Selecting previously unselected package r-bioc-biostrings.
493s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ...
493s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
493s Selecting previously unselected package r-bioc-keggrest.
493s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ...
493s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ...
493s Selecting previously unselected package r-bioc-annotationdbi.
493s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ...
493s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
493s Selecting previously unselected package r-cran-generics.
493s Preparing to unpack .../181-r-cran-generics_0.1.3-1_all.deb ...
493s Unpacking r-cran-generics (0.1.3-1) ...
493s Selecting previously unselected package r-cran-magrittr.
493s Preparing to unpack .../182-r-cran-magrittr_2.0.3-1_arm64.deb ...
493s Unpacking r-cran-magrittr (2.0.3-1) ...
493s Selecting previously unselected package r-cran-utf8.
493s Preparing to unpack .../183-r-cran-utf8_1.2.4-1_arm64.deb ...
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493s Selecting previously unselected package r-cran-pillar.
493s Preparing to unpack .../184-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
493s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
493s Selecting previously unselected package r-cran-fansi.
493s Preparing to unpack .../185-r-cran-fansi_1.0.5-1_arm64.deb ...
493s Unpacking r-cran-fansi (1.0.5-1) ...
494s Selecting previously unselected package r-cran-tibble.
494s Preparing to unpack .../186-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ...
494s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
494s Selecting previously unselected package r-cran-withr.
494s Preparing to unpack .../187-r-cran-withr_3.0.2+dfsg-1_all.deb ...
494s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
494s Selecting previously unselected package r-cran-tidyselect.
494s Preparing to unpack .../188-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ...
494s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
494s Selecting previously unselected package r-cran-dplyr.
494s Preparing to unpack .../189-r-cran-dplyr_1.1.4-4_arm64.deb ...
494s Unpacking r-cran-dplyr (1.1.4-4) ...
494s Selecting previously unselected package r-cran-purrr.
494s Preparing to unpack .../190-r-cran-purrr_1.0.4-1_arm64.deb ...
494s Unpacking r-cran-purrr (1.0.4-1) ...
494s Selecting previously unselected package r-cran-stringi.
494s Preparing to unpack .../191-r-cran-stringi_1.8.4-1build1_arm64.deb ...
494s Unpacking r-cran-stringi (1.8.4-1build1) ...
494s Selecting previously unselected package r-cran-stringr.
494s Preparing to unpack .../192-r-cran-stringr_1.5.1-1_all.deb ...
494s Unpacking r-cran-stringr (1.5.1-1) ...
494s Selecting previously unselected package r-cran-tidyr.
494s Preparing to unpack .../193-r-cran-tidyr_1.3.1-1_arm64.deb ...
494s Unpacking r-cran-tidyr (1.3.1-1) ...
494s Selecting previously unselected package r-cran-dbplyr.
494s Preparing to unpack .../194-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ...
494s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ...
494s Selecting previously unselected package r-cran-filelock.
494s Preparing to unpack .../195-r-cran-filelock_1.0.3-1_arm64.deb ...
494s Unpacking r-cran-filelock (1.0.3-1) ...
494s Selecting previously unselected package r-bioc-biocfilecache.
494s Preparing to unpack .../196-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
494s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ...
494s Selecting previously unselected package r-bioc-biocio.
495s Preparing to unpack .../197-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
495s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
495s Selecting previously unselected package r-cran-formatr.
495s Preparing to unpack .../198-r-cran-formatr_1.14-2_all.deb ...
495s Unpacking r-cran-formatr (1.14-2) ...
495s Selecting previously unselected package r-cran-lambda.r.
495s Preparing to unpack .../199-r-cran-lambda.r_1.2.4-2build1_all.deb ...
495s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
495s Selecting previously unselected package r-cran-futile.options.
495s Preparing to unpack .../200-r-cran-futile.options_1.0.1-3build1_all.deb ...
495s Unpacking r-cran-futile.options (1.0.1-3build1) ...
495s Selecting previously unselected package r-cran-futile.logger.
495s Preparing to unpack .../201-r-cran-futile.logger_1.4.3-4build1_all.deb ...
495s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
495s Selecting previously unselected package r-cran-snow.
495s Preparing to unpack .../202-r-cran-snow_1%3a0.4.4-2_all.deb ...
495s Unpacking r-cran-snow (1:0.4.4-2) ...
495s Selecting previously unselected package r-cran-codetools.
495s Preparing to unpack .../203-r-cran-codetools_0.2-20-1_all.deb ...
495s Unpacking r-cran-codetools (0.2-20-1) ...
495s Selecting previously unselected package r-cran-bh.
495s Preparing to unpack .../204-r-cran-bh_1.84.0-1_all.deb ...
495s Unpacking r-cran-bh (1.84.0-1) ...
495s Selecting previously unselected package r-bioc-biocparallel.
495s Preparing to unpack .../205-r-bioc-biocparallel_1.40.0-2_arm64.deb ...
495s Unpacking r-bioc-biocparallel (1.40.0-2) ...
495s Selecting previously unselected package r-cran-base64enc.
495s Preparing to unpack .../206-r-cran-base64enc_0.1-3-3_arm64.deb ...
495s Unpacking r-cran-base64enc (0.1-3-3) ...
495s Selecting previously unselected package r-cran-digest.
495s Preparing to unpack .../207-r-cran-digest_0.6.37-1_arm64.deb ...
495s Unpacking r-cran-digest (0.6.37-1) ...
495s Selecting previously unselected package r-cran-htmltools.
495s Preparing to unpack .../208-r-cran-htmltools_0.5.8.1-1_arm64.deb ...
495s Unpacking r-cran-htmltools (0.5.8.1-1) ...
495s Selecting previously unselected package r-cran-evaluate.
496s Preparing to unpack .../209-r-cran-evaluate_1.0.3-1_all.deb ...
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496s Selecting previously unselected package r-cran-xfun.
496s Preparing to unpack .../210-r-cran-xfun_0.51+dfsg-1_arm64.deb ...
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496s Selecting previously unselected package r-cran-highr.
496s Preparing to unpack .../211-r-cran-highr_0.11+dfsg-1_all.deb ...
496s Unpacking r-cran-highr (0.11+dfsg-1) ...
496s Selecting previously unselected package r-cran-yaml.
496s Preparing to unpack .../212-r-cran-yaml_2.3.10-1_arm64.deb ...
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496s Selecting previously unselected package libjs-mathjax.
496s Preparing to unpack .../213-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
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497s Selecting previously unselected package r-cran-knitr.
497s Preparing to unpack .../214-r-cran-knitr_1.49+dfsg-1_all.deb ...
497s Unpacking r-cran-knitr (1.49+dfsg-1) ...
497s Selecting previously unselected package r-cran-jquerylib.
497s Preparing to unpack .../215-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
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497s Selecting previously unselected package r-cran-fs.
497s Preparing to unpack .../216-r-cran-fs_1.6.5+dfsg-1_arm64.deb ...
497s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
497s Selecting previously unselected package r-cran-rappdirs.
497s Preparing to unpack .../217-r-cran-rappdirs_0.3.3-1_arm64.deb ...
497s Unpacking r-cran-rappdirs (0.3.3-1) ...
497s Selecting previously unselected package r-cran-sass.
497s Preparing to unpack .../218-r-cran-sass_0.4.9+dfsg-1_arm64.deb ...
497s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
497s Selecting previously unselected package r-cran-bslib.
497s Preparing to unpack .../219-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
497s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
497s Selecting previously unselected package r-cran-fontawesome.
497s Preparing to unpack .../220-r-cran-fontawesome_0.5.3-1_all.deb ...
497s Unpacking r-cran-fontawesome (0.5.3-1) ...
497s Selecting previously unselected package r-cran-tinytex.
498s Preparing to unpack .../221-r-cran-tinytex_0.56-1_all.deb ...
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498s Selecting previously unselected package libjs-modernizr.
498s Preparing to unpack .../222-libjs-modernizr_3.13.0-0.1_all.deb ...
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498s Selecting previously unselected package r-cran-pkgkitten.
498s Preparing to unpack .../223-r-cran-pkgkitten_0.2.4-1_all.deb ...
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498s Selecting previously unselected package r-cran-rcpp.
498s Preparing to unpack .../224-r-cran-rcpp_1.0.14-1_arm64.deb ...
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498s Selecting previously unselected package r-cran-later.
498s Preparing to unpack .../225-r-cran-later_1.4.1+dfsg-1_arm64.deb ...
498s Unpacking r-cran-later (1.4.1+dfsg-1) ...
498s Selecting previously unselected package r-cran-promises.
498s Preparing to unpack .../226-r-cran-promises_1.3.2+dfsg-1_arm64.deb ...
498s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
498s Selecting previously unselected package r-cran-httpuv.
498s Preparing to unpack .../227-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ...
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498s Selecting previously unselected package r-cran-xtable.
498s Preparing to unpack .../228-r-cran-xtable_1%3a1.8-4-2_all.deb ...
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498s Selecting previously unselected package r-cran-sourcetools.
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498s Selecting previously unselected package r-cran-commonmark.
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498s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
499s Preparing to unpack .../231-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
499s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
499s Selecting previously unselected package r-cran-shiny.
499s Preparing to unpack .../232-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
499s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
499s Selecting previously unselected package r-cran-rmarkdown.
499s Preparing to unpack .../233-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
499s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
499s Selecting previously unselected package r-cran-bookdown.
499s Preparing to unpack .../234-r-cran-bookdown_0.42+dfsg-1_all.deb ...
499s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
499s Selecting previously unselected package r-cran-biocmanager.
499s Preparing to unpack .../235-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
499s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
499s Selecting previously unselected package tex-common.
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499s Selecting previously unselected package t1utils.
499s Preparing to unpack .../237-t1utils_1.41-4build3_arm64.deb ...
499s Unpacking t1utils (1.41-4build3) ...
499s Selecting previously unselected package texlive-binaries.
499s Preparing to unpack .../238-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ...
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500s Selecting previously unselected package texlive-base.
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501s Selecting previously unselected package texlive-latex-base.
501s Preparing to unpack .../240-texlive-latex-base_2024.20250114-1_all.deb ...
501s Unpacking texlive-latex-base (2024.20250114-1) ...
501s Selecting previously unselected package texlive-bibtex-extra.
501s Preparing to unpack .../241-texlive-bibtex-extra_2024.20250114-1_all.deb ...
501s Unpacking texlive-bibtex-extra (2024.20250114-1) ...
504s Selecting previously unselected package r-bioc-biocversion.
504s Preparing to unpack .../242-r-bioc-biocversion_3.20.0-2_all.deb ...
504s Unpacking r-bioc-biocversion (3.20.0-2) ...
504s Selecting previously unselected package r-bioc-biocstyle.
504s Preparing to unpack .../243-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ...
504s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ...
504s Selecting previously unselected package r-cran-hms.
504s Preparing to unpack .../244-r-cran-hms_1.1.3-1_all.deb ...
504s Unpacking r-cran-hms (1.1.3-1) ...
505s Selecting previously unselected package r-cran-prettyunits.
505s Preparing to unpack .../245-r-cran-prettyunits_1.2.0-1_all.deb ...
505s Unpacking r-cran-prettyunits (1.2.0-1) ...
505s Selecting previously unselected package r-cran-progress.
505s Preparing to unpack .../246-r-cran-progress_1.2.3-1_all.deb ...
505s Unpacking r-cran-progress (1.2.3-1) ...
505s Selecting previously unselected package r-cran-httr2.
505s Preparing to unpack .../247-r-cran-httr2_1.1.1-1_all.deb ...
505s Unpacking r-cran-httr2 (1.1.1-1) ...
505s Selecting previously unselected package r-cran-xml2.
505s Preparing to unpack .../248-r-cran-xml2_1.3.7-1_arm64.deb ...
505s Unpacking r-cran-xml2 (1.3.7-1) ...
505s Selecting previously unselected package r-bioc-biomart.
505s Preparing to unpack .../249-r-bioc-biomart_2.62.1+dfsg-1_all.deb ...
505s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ...
505s Selecting previously unselected package r-cran-lattice.
505s Preparing to unpack .../250-r-cran-lattice_0.22-6-1_arm64.deb ...
505s Unpacking r-cran-lattice (0.22-6-1) ...
505s Selecting previously unselected package r-cran-matrix.
505s Preparing to unpack .../251-r-cran-matrix_1.7-3-1_arm64.deb ...
505s Unpacking r-cran-matrix (1.7-3-1) ...
505s Selecting previously unselected package r-cran-matrixstats.
505s Preparing to unpack .../252-r-cran-matrixstats_1.5.0-1_arm64.deb ...
505s Unpacking r-cran-matrixstats (1.5.0-1) ...
505s Selecting previously unselected package r-bioc-matrixgenerics.
505s Preparing to unpack .../253-r-bioc-matrixgenerics_1.18.1-1_all.deb ...
505s Unpacking r-bioc-matrixgenerics (1.18.1-1) ...
505s Selecting previously unselected package r-cran-abind.
505s Preparing to unpack .../254-r-cran-abind_1.4-8-1_all.deb ...
505s Unpacking r-cran-abind (1.4-8-1) ...
506s Selecting previously unselected package r-bioc-s4arrays.
506s Preparing to unpack .../255-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ...
506s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ...
506s Selecting previously unselected package r-bioc-sparsearray.
506s Preparing to unpack .../256-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ...
506s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ...
506s Selecting previously unselected package r-bioc-delayedarray.
506s Preparing to unpack .../257-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ...
506s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ...
506s Selecting previously unselected package r-bioc-genomicranges.
506s Preparing to unpack .../258-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ...
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516s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
516s Setting up r-cran-stringr (1.5.1-1) ...
516s Setting up r-bioc-biocparallel (1.40.0-2) ...
516s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
516s Setting up r-cran-xml2 (1.3.7-1) ...
516s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
516s Setting up r-cran-fontawesome (0.5.3-1) ...
516s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
516s Setting up gfortran (4:14.2.0-1ubuntu1) ...
516s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
516s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
516s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
516s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
516s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
516s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
516s Setting up texlive-bibtex-extra (2024.20250114-1) ...
516s Setting up r-cran-interp (1.1-6-1) ...
516s Setting up r-cran-httr2 (1.1.1-1) ...
516s Setting up r-cran-httr (1.4.7+dfsg-1) ...
516s Setting up r-cran-hms (1.1.3-1) ...
516s Setting up r-cran-memoise (2.0.1-1) ...
516s Setting up r-cran-promises (1.3.2+dfsg-1) ...
516s Setting up r-cran-purrr (1.0.4-1) ...
516s Setting up r-cran-blob (1.2.4-1) ...
516s Setting up r-bioc-xvector (0.46.0-2) ...
516s Setting up r-cran-dplyr (1.1.4-4) ...
516s Setting up r-cran-rsqlite (2.3.9-1) ...
516s Setting up r-cran-progress (1.2.3-1) ...
516s Setting up r-base-dev (4.4.3-1) ...
516s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
516s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
516s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
516s Setting up r-cran-latticeextra (0.6-30-1) ...
516s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
516s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
516s Setting up r-cran-tidyr (1.3.1-1) ...
516s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
516s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ...
516s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
516s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
516s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
516s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
516s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
516s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
516s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
516s Setting up r-cran-bookdown (0.42+dfsg-1) ...
516s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
516s Setting up r-bioc-pwalign (1.2.0-2) ...
516s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
516s Setting up r-bioc-annotationdbi (1.68.0-2) ...
516s Setting up r-bioc-biomart (2.62.1+dfsg-1) ...
516s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
516s Setting up r-bioc-genomicalignments (1.42.0-2) ...
516s Setting up r-bioc-rtracklayer (1.66.0-2) ...
516s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
516s Setting up r-bioc-shortread (1.64.0-3) ...
516s Processing triggers for libc-bin (2.41-1ubuntu2) ...
516s Processing triggers for man-db (2.13.0-1) ...
518s Processing triggers for install-info (7.1.1-1) ...
518s Processing triggers for tex-common (6.19) ...
518s Running updmap-sys. This may take some time... done.
519s Running mktexlsr /var/lib/texmf ... done.
519s Building format(s) --all.
558s 	This may take some time... done.
560s autopkgtest [15:19:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
560s autopkgtest [15:19:53]: test pkg-r-autopkgtest: [-----------------------
560s Test: Try to load the R library ShortRead
560s 
560s R version 4.4.3 (2025-02-28) -- "Trophy Case"
560s Copyright (C) 2025 The R Foundation for Statistical Computing
560s Platform: aarch64-unknown-linux-gnu
560s 
560s R is free software and comes with ABSOLUTELY NO WARRANTY.
560s You are welcome to redistribute it under certain conditions.
560s Type 'license()' or 'licence()' for distribution details.
560s 
560s R is a collaborative project with many contributors.
560s Type 'contributors()' for more information and
560s 'citation()' on how to cite R or R packages in publications.
560s 
560s Type 'demo()' for some demos, 'help()' for on-line help, or
560s 'help.start()' for an HTML browser interface to help.
560s Type 'q()' to quit R.
560s 
560s > library('ShortRead')
560s Loading required package: BiocGenerics
561s 
561s Attaching package: ‘BiocGenerics’
561s 
561s The following objects are masked from ‘package:stats’:
561s 
561s     IQR, mad, sd, var, xtabs
561s 
561s The following objects are masked from ‘package:base’:
561s 
561s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
561s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
561s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
561s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
561s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
561s     table, tapply, union, unique, unsplit, which.max, which.min
561s 
561s Loading required package: BiocParallel
561s Loading required package: Biostrings
561s Loading required package: S4Vectors
561s Loading required package: stats4
562s 
562s Attaching package: ‘S4Vectors’
562s 
562s The following object is masked from ‘package:utils’:
562s 
562s     findMatches
562s 
562s The following objects are masked from ‘package:base’:
562s 
562s     expand.grid, I, unname
562s 
562s Loading required package: IRanges
563s Loading required package: XVector
563s Loading required package: GenomeInfoDb
564s 
564s Attaching package: ‘Biostrings’
564s 
564s The following object is masked from ‘package:base’:
564s 
564s     strsplit
564s 
564s Loading required package: Rsamtools
564s Loading required package: GenomicRanges
565s Loading required package: GenomicAlignments
565s Loading required package: SummarizedExperiment
565s Loading required package: MatrixGenerics
565s Loading required package: matrixStats
566s 
566s Attaching package: ‘MatrixGenerics’
566s 
566s The following objects are masked from ‘package:matrixStats’:
566s 
566s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
566s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
566s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
566s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
566s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
566s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
566s     colWeightedMeans, colWeightedMedians, colWeightedSds,
566s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
566s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
566s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
566s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
566s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
566s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
566s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
566s     rowWeightedSds, rowWeightedVars
566s 
566s Loading required package: Biobase
566s Welcome to Bioconductor
566s 
566s     Vignettes contain introductory material; view with
566s     'browseVignettes()'. To cite Bioconductor, see
566s     'citation("Biobase")', and for packages 'citation("pkgname")'.
566s 
566s 
566s Attaching package: ‘Biobase’
566s 
566s The following object is masked from ‘package:MatrixGenerics’:
566s 
566s     rowMedians
566s 
566s The following objects are masked from ‘package:matrixStats’:
566s 
566s     anyMissing, rowMedians
566s 
573s > 
573s > 
573s Other tests are currently unsupported!
573s They will be progressively added.
573s autopkgtest [15:20:06]: test pkg-r-autopkgtest: -----------------------]
574s autopkgtest [15:20:07]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
574s pkg-r-autopkgtest    PASS
574s autopkgtest [15:20:07]: @@@@@@@@@@@@@@@@@@@@ summary
574s pkg-r-autopkgtest    PASS
594s nova [W] Using flock in prodstack6-arm64
594s Creating nova instance adt-plucky-arm64-r-bioc-shortread-20250315-151032-juju-7f2275-prod-proposed-migration-environment-2-67f9d948-b42b-49be-bc90-17fe2a22d436 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
594s nova [W] Timed out waiting for 05b2aee0-d37b-4863-843e-e9b8237cd35b to get deleted.