0s autopkgtest [11:42:26]: starting date and time: 2025-03-15 11:42:26+0000 0s autopkgtest [11:42:26]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [11:42:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.phbkq6bu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-scuttle --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-20.secgroup --name adt-plucky-arm64-r-bioc-scuttle-20250315-114226-juju-7f2275-prod-proposed-migration-environment-2-628d17c4-4fe5-4922-8882-c69be9b77d26 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 167s autopkgtest [11:45:13]: testbed dpkg architecture: arm64 167s autopkgtest [11:45:13]: testbed apt version: 2.9.33 167s autopkgtest [11:45:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 168s autopkgtest [11:45:14]: testbed release detected to be: None 168s autopkgtest [11:45:14]: updating testbed package index (apt update) 169s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 169s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 169s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 169s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 169s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 169s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 169s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 170s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 170s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1888 B] 170s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 170s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [353 kB] 170s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.7 kB] 170s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 170s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 170s Fetched 1052 kB in 2s (644 kB/s) 171s Reading package lists... 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Calculating upgrade... 173s Calculating upgrade... 173s The following packages will be upgraded: 173s python3-jinja2 strace 173s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 608 kB of archives. 173s After this operation, 11.3 kB of additional disk space will be used. 173s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 174s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 175s Fetched 608 kB in 1s (572 kB/s) 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 175s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 175s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 175s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 175s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 175s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 175s Setting up strace (6.13+ds-1ubuntu1) ... 175s Processing triggers for man-db (2.13.0-1) ... 176s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Solving dependencies... 177s The following packages will be REMOVED: 177s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 177s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 177s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 177s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 178s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 178s After this operation, 267 MB disk space will be freed. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 178s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 178s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 178s Removing libpython3.12t64:arm64 (3.12.9-1) ... 178s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 178s Removing libnsl2:arm64 (1.3.0-3build3) ... 178s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 178s Removing libunwind8:arm64 (1.6.2-3.1) ... 178s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 178s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 180s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 180s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 180s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 180s /etc/kernel/postrm.d/initramfs-tools: 180s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 180s /etc/kernel/postrm.d/zz-flash-kernel: 180s flash-kernel: Kernel 6.11.0-8-generic has been removed. 181s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 181s /etc/kernel/postrm.d/zz-update-grub: 181s Sourcing file `/etc/default/grub' 181s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 181s Generating grub configuration file ... 181s Found linux image: /boot/vmlinuz-6.14.0-10-generic 181s Found initrd image: /boot/initrd.img-6.14.0-10-generic 182s Warning: os-prober will not be executed to detect other bootable partitions. 182s Systems on them will not be added to the GRUB boot configuration. 182s Check GRUB_DISABLE_OS_PROBER documentation entry. 182s Adding boot menu entry for UEFI Firmware Settings ... 182s done 182s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 182s Processing triggers for libc-bin (2.41-1ubuntu1) ... 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 182s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 182s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 182s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 182s autopkgtest [11:45:28]: upgrading testbed (apt dist-upgrade and autopurge) 183s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 183s Starting 2 pkgProblemResolver with broken count: 0 183s Done 184s Entering ResolveByKeep 184s 185s Calculating upgrade... 185s The following packages will be upgraded: 185s libc-bin libc-dev-bin libc6 libc6-dev locales 185s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 9530 kB of archives. 185s After this operation, 0 B of additional disk space will be used. 185s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 187s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 188s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 191s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 191s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 196s Preconfiguring packages ... 196s Fetched 9530 kB in 11s (904 kB/s) 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 196s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 196s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 196s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 196s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 196s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 196s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up libc6:arm64 (2.41-1ubuntu2) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 197s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 197s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up libc-bin (2.41-1ubuntu2) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 197s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 197s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 197s Setting up locales (2.41-1ubuntu2) ... 198s Generating locales (this might take a while)... 200s en_US.UTF-8... done 200s Generation complete. 200s Setting up libc-dev-bin (2.41-1ubuntu2) ... 200s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 200s Processing triggers for man-db (2.13.0-1) ... 201s Processing triggers for systemd (257.3-1ubuntu3) ... 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 203s Solving dependencies... 203s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s autopkgtest [11:45:50]: rebooting testbed after setup commands that affected boot 227s autopkgtest [11:46:13]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 230s autopkgtest [11:46:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-scuttle 232s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-scuttle 1.16.0+dfsg-3 (dsc) [2381 B] 232s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-scuttle 1.16.0+dfsg-3 (tar) [92.9 kB] 232s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-scuttle 1.16.0+dfsg-3 (diff) [3416 B] 232s gpgv: Signature made Tue Jan 21 12:47:23 2025 UTC 232s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 232s gpgv: issuer "crusoe@debian.org" 232s gpgv: Can't check signature: No public key 232s dpkg-source: warning: cannot verify inline signature for ./r-bioc-scuttle_1.16.0+dfsg-3.dsc: no acceptable signature found 232s autopkgtest [11:46:18]: testing package r-bioc-scuttle version 1.16.0+dfsg-3 233s autopkgtest [11:46:19]: build not needed 237s autopkgtest [11:46:23]: test pkg-r-autopkgtest: preparing testbed 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 237s Starting pkgProblemResolver with broken count: 0 238s Starting 2 pkgProblemResolver with broken count: 0 238s Done 239s The following NEW packages will be installed: 239s build-essential comerr-dev cpp cpp-14 cpp-14-aarch64-linux-gnu 239s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 239s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 239s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-14 239s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 239s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 239s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 239s icu-devtools javascript-common krb5-multidev libaec-dev libaec0 libamd3 239s libasan8 libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 239s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 libcolamd3 239s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 239s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libglpk40 239s libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 239s libgnutls28-dev libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b 239s libhdf5-310 libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 239s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhnswlib-dev libhwasan0 libice6 239s libicu-dev libidn2-dev libio-string-perl libisl23 libitm1 libjbig0 239s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 239s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 239s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 239s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 239s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 239s libjs-twitter-bootstrap-datepicker libkadm5clnt-mit12 libkadm5srv-mit12 239s libkdb5-10t64 libkpathsea6 libkrb5-dev liblapack-dev liblapack3 239s liblatex-tounicode-perl libldap-dev liblerc4 liblsan0 libltdl7 liblua5.4-0 239s liblzma-dev libmpc3 libmpfi0 libncurses-dev libnghttp2-dev libp11-kit-dev 239s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 239s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 239s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl-dev libptexenc1 239s libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev 239s libssl-dev libstdc++-14-dev libsuitesparseconfig7 libsynctex2 libsz2 239s libtasn1-6-dev libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 239s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 libwebp7 239s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 239s libxrender1 libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler nettle-dev 239s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 239s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 239s r-bioc-alabaster.base r-bioc-alabaster.matrix r-bioc-alabaster.ranges 239s r-bioc-alabaster.sce r-bioc-alabaster.schemas r-bioc-alabaster.se 239s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 239s r-bioc-assorthead r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache 239s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocneighbors r-bioc-biocparallel 239s r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 239s r-bioc-bluster r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger 239s r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb 239s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 239s r-bioc-genomicranges r-bioc-gypsum r-bioc-hdf5array r-bioc-iranges 239s r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-metapod 239s r-bioc-protgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 239s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 239s r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-scran r-bioc-scrnaseq 239s r-bioc-scuttle r-bioc-singlecellexperiment r-bioc-sparsearray 239s r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-ucsc.utils 239s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 239s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 239s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 239s r-cran-callr r-cran-cli r-cran-cluster r-cran-codetools r-cran-commonmark 239s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 239s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dqrng r-cran-evaluate 239s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 239s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 239s r-cran-generics r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv 239s r-cran-httr r-cran-httr2 r-cran-igraph r-cran-irlba r-cran-jquerylib 239s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 239s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-locfit 239s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 239s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 239s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 239s r-cran-processx r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 239s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson 239s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rsvd 239s r-cran-sass r-cran-shiny r-cran-sitmo r-cran-snow r-cran-sourcetools 239s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 239s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 239s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable 239s r-cran-yaml t1utils tex-common texlive-base texlive-bibtex-extra 239s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 239s zlib1g-dev 239s 0 upgraded, 363 newly installed, 0 to remove and 0 not upgraded. 239s Need to get 468 MB of archives. 239s After this operation, 1458 MB of additional disk space will be used. 239s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 240s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 240s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 251s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 251s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 251s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 251s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 251s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 251s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 251s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 254s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 256s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 259s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 260s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 262s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 265s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 289s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 290s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 290s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 290s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 293s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 307s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 307s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 307s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 307s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 307s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 307s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 308s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 309s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 309s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 309s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 309s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 310s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 310s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 316s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 318s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 319s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 319s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 332s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 332s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 332s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 332s Get:42 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-helpers arm64 1.14.5+repack-3 [17.0 kB] 332s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 333s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 333s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 comerr-dev arm64 2.1-1.47.2-1ubuntu1 [45.1 kB] 333s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libgssrpc4t64 arm64 1.21.3-4ubuntu2 [58.5 kB] 333s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4ubuntu2 [40.3 kB] 333s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libkdb5-10t64 arm64 1.21.3-4ubuntu2 [40.9 kB] 333s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5srv-mit12 arm64 1.21.3-4ubuntu2 [53.8 kB] 333s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 krb5-multidev arm64 1.21.3-4ubuntu2 [125 kB] 333s Get:51 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 333s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsuitesparseconfig7 arm64 1:7.8.3+dfsg-3 [13.2 kB] 333s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libamd3 arm64 1:7.8.3+dfsg-3 [26.1 kB] 333s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 333s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 333s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 333s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 333s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 333s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 333s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 334s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 346s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 346s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build4 [359 kB] 346s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 346s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 347s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 347s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 347s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 347s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 347s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libcolamd3 arm64 1:7.8.3+dfsg-3 [18.3 kB] 347s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 347s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libkrb5-dev arm64 1.21.3-4ubuntu2 [11.9 kB] 348s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libldap-dev arm64 2.6.9+dfsg-1~exp2ubuntu1 [318 kB] 348s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 348s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 348s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 348s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 348s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 348s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3ubuntu1 [10.1 kB] 348s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3ubuntu1 [335 kB] 349s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 349s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.22.0-1ubuntu1 [437 kB] 349s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.9-2ubuntu2 [24.4 kB] 349s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2ubuntu2 [24.4 kB] 349s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu3 [23.5 kB] 349s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [91.1 kB] 349s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10.1-1 [1190 kB] 351s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.9-2ubuntu2 [1143 kB] 352s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 353s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 353s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.4.1-1ubuntu1 [3287 kB] 356s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 356s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [353 kB] 357s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.12.1-3ubuntu1 [506 kB] 357s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 357s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 358s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 358s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libltdl7 arm64 2.5.4-4 [43.0 kB] 358s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 libglpk40 arm64 5.0-1build2 [337 kB] 358s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 358s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 359s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 359s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 360s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [117 kB] 361s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [109 kB] 361s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 361s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [31.8 kB] 361s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [11.6 kB] 361s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 361s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 361s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 361s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 361s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 361s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 361s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-dev arm64 1.14.5+repack-3 [3581 kB] 365s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhnswlib-dev all 0.8.0-1build3 [24.4 kB] 365s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 365s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 365s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 376s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 377s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 377s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 377s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 377s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 377s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 378s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 378s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 378s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 378s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 378s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 378s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 379s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 379s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 379s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 379s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 379s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 381s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 385s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 385s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 386s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 386s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 386s Get:142 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 386s Get:143 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 386s Get:144 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.1-1 [238 kB] 386s Get:145 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.1-1 [49.6 kB] 387s Get:146 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.1-1 [27.6 kB] 387s Get:147 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 387s Get:148 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 387s Get:149 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 387s Get:150 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 387s Get:151 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 387s Get:152 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 388s Get:153 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 388s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 388s Get:155 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 388s Get:156 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 389s Get:157 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 389s Get:158 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 389s Get:159 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 389s Get:160 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 390s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 390s Get:162 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 390s Get:163 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 390s Get:164 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 390s Get:165 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 391s Get:166 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 391s Get:167 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 391s Get:168 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 392s Get:169 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 392s Get:170 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 392s Get:171 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 392s Get:172 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 392s Get:173 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 392s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 392s Get:175 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 392s Get:176 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 392s Get:177 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 392s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 424s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 424s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 424s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 424s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 424s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 424s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 424s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 458s Get:186 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 458s Get:187 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 458s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 458s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 458s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 459s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-alabaster.schemas all 1.6.0+ds-2 [24.9 kB] 459s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 462s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhdf5lib arm64 1.28.0+dfsg-2build1 [97.4 kB] 462s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhdf5filters arm64 1.18.0+dfsg-2 [135 kB] 463s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhdf5 arm64 2.50.2+dfsg-1build1 [819 kB] 464s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 465s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 465s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 468s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-alabaster.base arm64 1.6.1+ds-2build1 [752 kB] 469s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 471s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 477s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 478s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 479s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 481s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 481s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 481s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 482s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 482s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 483s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 484s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 486s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-hdf5array arm64 1.34.0-2build1 [8783 kB] 497s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-alabaster.matrix arm64 1.6.1+ds-2 [442 kB] 497s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 497s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 497s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 497s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 497s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 498s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 498s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 499s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 499s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 513s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 519s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 521s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-alabaster.ranges all 1.6.0+ds-2 [100 kB] 521s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 524s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 525s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 526s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-alabaster.se all 1.6.0+ds-2 [87.0 kB] 526s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-alabaster.sce all 1.6.0+ds-2 [83.6 kB] 526s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 527s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 528s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 528s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 530s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 532s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 532s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 532s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 534s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 534s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 534s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 534s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 534s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 534s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 534s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 534s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 536s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 536s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 550s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 550s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 555s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 556s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 556s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 556s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 556s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 556s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 557s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 557s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 558s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 558s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 558s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 560s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 560s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 561s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 562s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 563s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 564s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 564s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 564s Get:269 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 564s Get:270 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 564s Get:271 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 564s Get:272 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 565s Get:273 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 565s Get:274 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-assorthead all 1.0.1+ds-2 [194 kB] 565s Get:275 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-beachmat arm64 2.22.0+ds-2 [940 kB] 566s Get:276 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 567s Get:277 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocneighbors arm64 2.0.1+ds-2 [397 kB] 567s Get:278 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 567s Get:279 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 567s Get:280 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 567s Get:281 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 567s Get:282 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 568s Get:283 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 568s Get:284 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 568s Get:285 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 569s Get:286 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-scaledmatrix all 1.14.0+dfsg-2 [324 kB] 569s Get:287 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-irlba arm64 2.3.5.1-4 [295 kB] 570s Get:288 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsvd all 1.0.5-1 [3589 kB] 574s Get:289 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocsingular arm64 1.22.0+ds-2 [354 kB] 574s Get:290 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 574s Get:291 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 574s Get:292 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 575s Get:293 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 575s Get:294 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 576s Get:295 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 576s Get:296 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 582s Get:297 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 583s Get:298 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 583s Get:299 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 583s Get:300 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 584s Get:301 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 589s Get:302 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 591s Get:303 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 591s Get:304 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 591s Get:305 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 591s Get:306 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 592s Get:307 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 592s Get:308 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 593s Get:309 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 593s Get:310 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 593s Get:311 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 593s Get:312 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 597s Get:313 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 599s Get:314 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 601s Get:315 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 601s Get:316 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 601s Get:317 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 612s Get:318 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 645s Get:319 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 647s Get:320 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 759s Get:321 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 760s Get:322 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB] 761s Get:323 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-igraph arm64 2.1.4-1 [5150 kB] 768s Get:324 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-bluster arm64 1.16.0+dfsg-2 [542 kB] 769s Get:325 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsematrixstats arm64 1.18.0+dfsg-2 [853 kB] 770s Get:326 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 771s Get:327 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 771s Get:328 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 774s Get:329 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 774s Get:330 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-edger arm64 4.4.2+dfsg-1 [1114 kB] 776s Get:331 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 779s Get:332 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 779s Get:333 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 780s Get:334 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 784s Get:335 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 786s Get:336 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 787s Get:337 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 787s Get:338 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 788s Get:339 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 793s Get:340 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 794s Get:341 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 794s Get:342 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 796s Get:343 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB] 796s Get:344 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr2 all 1.1.1-1 [752 kB] 797s Get:345 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-gypsum all 1.2.0+ds-2 [212 kB] 797s Get:346 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-metapod arm64 1.14.0+dfsg-2 [218 kB] 797s Get:347 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-scuttle arm64 1.16.0+dfsg-3 [443 kB] 797s Get:348 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sitmo arm64 2.0.2-1 [129 kB] 798s Get:349 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dqrng arm64 0.3.2+dfsg-1 [157 kB] 798s Get:350 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-scran arm64 1.34.0+dfsg-3 [1009 kB] 799s Get:351 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-scrnaseq all 2.20.0+ds-2 [309 kB] 799s Get:352 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 799s Get:353 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB] 800s Get:354 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB] 800s Get:355 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 800s Get:356 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 801s Get:357 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 802s Get:358 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 802s Get:359 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB] 802s Get:360 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 802s Get:361 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 802s Get:362 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB] 802s Get:363 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB] 805s Preconfiguring packages ... 805s Fetched 468 MB in 9min 25s (829 kB/s) 805s Selecting previously unselected package libisl23:arm64. 805s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 805s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 805s Unpacking libisl23:arm64 (0.27-1) ... 805s Selecting previously unselected package libmpc3:arm64. 805s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 805s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 805s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 805s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 805s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 805s Selecting previously unselected package cpp-14. 806s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 806s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 806s Selecting previously unselected package cpp-aarch64-linux-gnu. 806s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 806s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 806s Selecting previously unselected package cpp. 806s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 806s Unpacking cpp (4:14.2.0-1ubuntu1) ... 806s Selecting previously unselected package libcc1-0:arm64. 806s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libgomp1:arm64. 806s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libitm1:arm64. 806s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libasan8:arm64. 806s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package liblsan0:arm64. 806s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libtsan2:arm64. 806s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libubsan1:arm64. 806s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libhwasan0:arm64. 806s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 806s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 806s Selecting previously unselected package libgcc-14-dev:arm64. 806s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 806s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 806s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 806s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 806s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 807s Selecting previously unselected package gcc-14. 807s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 807s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 807s Selecting previously unselected package gcc-aarch64-linux-gnu. 807s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 807s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 807s Selecting previously unselected package gcc. 807s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 807s Unpacking gcc (4:14.2.0-1ubuntu1) ... 807s Selecting previously unselected package libstdc++-14-dev:arm64. 807s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 807s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 807s Selecting previously unselected package g++-14-aarch64-linux-gnu. 807s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 807s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 807s Selecting previously unselected package g++-14. 807s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 807s Unpacking g++-14 (14.2.0-17ubuntu3) ... 807s Selecting previously unselected package g++-aarch64-linux-gnu. 807s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 807s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 807s Selecting previously unselected package g++. 807s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 807s Unpacking g++ (4:14.2.0-1ubuntu1) ... 807s Selecting previously unselected package build-essential. 807s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 807s Unpacking build-essential (12.10ubuntu1) ... 807s Selecting previously unselected package dctrl-tools. 807s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 808s Unpacking dctrl-tools (2.24-3build3) ... 808s Selecting previously unselected package fonts-dejavu-mono. 808s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 808s Unpacking fonts-dejavu-mono (2.37-8) ... 808s Selecting previously unselected package fonts-dejavu-core. 808s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 808s Unpacking fonts-dejavu-core (2.37-8) ... 808s Selecting previously unselected package fontconfig-config. 808s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 808s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 808s Selecting previously unselected package libfontconfig1:arm64. 808s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 808s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 808s Selecting previously unselected package fontconfig. 808s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 808s Unpacking fontconfig (2.15.0-2ubuntu1) ... 808s Selecting previously unselected package fonts-font-awesome. 808s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 808s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 808s Selecting previously unselected package fonts-glyphicons-halflings. 808s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 808s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 808s Selecting previously unselected package fonts-lmodern. 808s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 808s Unpacking fonts-lmodern (2.005-1) ... 808s Selecting previously unselected package fonts-mathjax. 808s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 808s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 808s Selecting previously unselected package libgfortran5:arm64. 808s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 808s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 808s Selecting previously unselected package libgfortran-14-dev:arm64. 808s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 808s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 808s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 808s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 808s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 809s Selecting previously unselected package gfortran-14. 809s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 809s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 809s Selecting previously unselected package gfortran-aarch64-linux-gnu. 809s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 809s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 809s Selecting previously unselected package gfortran. 809s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 809s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 809s Selecting previously unselected package hdf5-helpers. 809s Preparing to unpack .../041-hdf5-helpers_1.14.5+repack-3_arm64.deb ... 809s Unpacking hdf5-helpers (1.14.5+repack-3) ... 809s Selecting previously unselected package icu-devtools. 809s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_arm64.deb ... 809s Unpacking icu-devtools (76.1-1ubuntu2) ... 809s Selecting previously unselected package javascript-common. 809s Preparing to unpack .../043-javascript-common_12_all.deb ... 809s Unpacking javascript-common (12) ... 809s Selecting previously unselected package comerr-dev:arm64. 809s Preparing to unpack .../044-comerr-dev_2.1-1.47.2-1ubuntu1_arm64.deb ... 809s Unpacking comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ... 809s Selecting previously unselected package libgssrpc4t64:arm64. 809s Preparing to unpack .../045-libgssrpc4t64_1.21.3-4ubuntu2_arm64.deb ... 809s Unpacking libgssrpc4t64:arm64 (1.21.3-4ubuntu2) ... 809s Selecting previously unselected package libkadm5clnt-mit12:arm64. 809s Preparing to unpack .../046-libkadm5clnt-mit12_1.21.3-4ubuntu2_arm64.deb ... 809s Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu2) ... 809s Selecting previously unselected package libkdb5-10t64:arm64. 809s Preparing to unpack .../047-libkdb5-10t64_1.21.3-4ubuntu2_arm64.deb ... 809s Unpacking libkdb5-10t64:arm64 (1.21.3-4ubuntu2) ... 809s Selecting previously unselected package libkadm5srv-mit12:arm64. 809s Preparing to unpack .../048-libkadm5srv-mit12_1.21.3-4ubuntu2_arm64.deb ... 809s Unpacking libkadm5srv-mit12:arm64 (1.21.3-4ubuntu2) ... 809s Selecting previously unselected package krb5-multidev:arm64. 809s Preparing to unpack .../049-krb5-multidev_1.21.3-4ubuntu2_arm64.deb ... 809s Unpacking krb5-multidev:arm64 (1.21.3-4ubuntu2) ... 809s Selecting previously unselected package libaec0:arm64. 809s Preparing to unpack .../050-libaec0_1.1.3-1_arm64.deb ... 809s Unpacking libaec0:arm64 (1.1.3-1) ... 809s Selecting previously unselected package libsuitesparseconfig7:arm64. 809s Preparing to unpack .../051-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_arm64.deb ... 809s Unpacking libsuitesparseconfig7:arm64 (1:7.8.3+dfsg-3) ... 809s Selecting previously unselected package libamd3:arm64. 809s Preparing to unpack .../052-libamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 809s Unpacking libamd3:arm64 (1:7.8.3+dfsg-3) ... 809s Selecting previously unselected package libio-string-perl. 809s Preparing to unpack .../053-libio-string-perl_1.08-4_all.deb ... 809s Unpacking libio-string-perl (1.08-4) ... 809s Selecting previously unselected package liblatex-tounicode-perl. 809s Preparing to unpack .../054-liblatex-tounicode-perl_0.55-1_all.deb ... 809s Unpacking liblatex-tounicode-perl (0.55-1) ... 809s Selecting previously unselected package libbibtex-parser-perl. 809s Preparing to unpack .../055-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 809s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 809s Selecting previously unselected package libblas3:arm64. 809s Preparing to unpack .../056-libblas3_3.12.1-2_arm64.deb ... 809s Unpacking libblas3:arm64 (3.12.1-2) ... 809s Selecting previously unselected package libblas-dev:arm64. 809s Preparing to unpack .../057-libblas-dev_3.12.1-2_arm64.deb ... 809s Unpacking libblas-dev:arm64 (3.12.1-2) ... 809s Selecting previously unselected package libsnappy1v5:arm64. 809s Preparing to unpack .../058-libsnappy1v5_1.2.1-1_arm64.deb ... 809s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 809s Selecting previously unselected package libblosc1:arm64. 809s Preparing to unpack .../059-libblosc1_1.21.5+ds-1build1_arm64.deb ... 809s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 809s Selecting previously unselected package libboost1.83-dev:arm64. 809s Preparing to unpack .../060-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 809s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 811s Selecting previously unselected package libboost-dev:arm64. 811s Preparing to unpack .../061-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 811s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 811s Selecting previously unselected package libbrotli-dev:arm64. 811s Preparing to unpack .../062-libbrotli-dev_1.1.0-2build4_arm64.deb ... 811s Unpacking libbrotli-dev:arm64 (1.1.0-2build4) ... 811s Selecting previously unselected package libbz2-dev:arm64. 811s Preparing to unpack .../063-libbz2-dev_1.0.8-6_arm64.deb ... 811s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 811s Selecting previously unselected package libpixman-1-0:arm64. 811s Preparing to unpack .../064-libpixman-1-0_0.44.0-3_arm64.deb ... 811s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 811s Selecting previously unselected package libxcb-render0:arm64. 811s Preparing to unpack .../065-libxcb-render0_1.17.0-2_arm64.deb ... 811s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 811s Selecting previously unselected package libxcb-shm0:arm64. 811s Preparing to unpack .../066-libxcb-shm0_1.17.0-2_arm64.deb ... 811s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 811s Selecting previously unselected package libxrender1:arm64. 811s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 811s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 811s Selecting previously unselected package libcairo2:arm64. 812s Preparing to unpack .../068-libcairo2_1.18.2-2_arm64.deb ... 812s Unpacking libcairo2:arm64 (1.18.2-2) ... 812s Selecting previously unselected package libcolamd3:arm64. 812s Preparing to unpack .../069-libcolamd3_1%3a7.8.3+dfsg-3_arm64.deb ... 812s Unpacking libcolamd3:arm64 (1:7.8.3+dfsg-3) ... 812s Selecting previously unselected package libidn2-dev:arm64. 812s Preparing to unpack .../070-libidn2-dev_2.3.7-2build2_arm64.deb ... 812s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 812s Selecting previously unselected package libkrb5-dev:arm64. 812s Preparing to unpack .../071-libkrb5-dev_1.21.3-4ubuntu2_arm64.deb ... 812s Unpacking libkrb5-dev:arm64 (1.21.3-4ubuntu2) ... 812s Selecting previously unselected package libldap-dev:arm64. 812s Preparing to unpack .../072-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_arm64.deb ... 812s Unpacking libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ... 812s Selecting previously unselected package libpkgconf3:arm64. 812s Preparing to unpack .../073-libpkgconf3_1.8.1-4_arm64.deb ... 812s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 812s Selecting previously unselected package pkgconf-bin. 812s Preparing to unpack .../074-pkgconf-bin_1.8.1-4_arm64.deb ... 812s Unpacking pkgconf-bin (1.8.1-4) ... 812s Selecting previously unselected package pkgconf:arm64. 812s Preparing to unpack .../075-pkgconf_1.8.1-4_arm64.deb ... 812s Unpacking pkgconf:arm64 (1.8.1-4) ... 812s Selecting previously unselected package libnghttp2-dev:arm64. 812s Preparing to unpack .../076-libnghttp2-dev_1.64.0-1_arm64.deb ... 812s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... 812s Selecting previously unselected package libpsl-dev:arm64. 812s Preparing to unpack .../077-libpsl-dev_0.21.2-1.1build1_arm64.deb ... 812s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ... 812s Selecting previously unselected package libgmpxx4ldbl:arm64. 812s Preparing to unpack .../078-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_arm64.deb ... 812s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 812s Selecting previously unselected package 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package libgraphite2-3:arm64. 813s Preparing to unpack .../099-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 813s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 813s Selecting previously unselected package libharfbuzz0b:arm64. 813s Preparing to unpack .../100-libharfbuzz0b_10.2.0-1_arm64.deb ... 813s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 813s Selecting previously unselected package libsz2:arm64. 813s Preparing to unpack .../101-libsz2_1.1.3-1_arm64.deb ... 813s Unpacking libsz2:arm64 (1.1.3-1) ... 813s Selecting previously unselected package libhdf5-310:arm64. 813s Preparing to unpack .../102-libhdf5-310_1.14.5+repack-3_arm64.deb ... 813s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 813s Selecting previously unselected package libhdf5-cpp-310:arm64. 813s Preparing to unpack .../103-libhdf5-cpp-310_1.14.5+repack-3_arm64.deb ... 813s Unpacking libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... 813s Selecting previously unselected package libhdf5-fortran-310:arm64. 813s 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package libjs-jquery-ui. 815s Preparing to unpack .../130-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 815s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 815s Selecting previously unselected package libjs-json. 815s Preparing to unpack .../131-libjs-json_0~20221030+~1.0.8-1_all.deb ... 815s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 815s Selecting previously unselected package libjs-lunr. 815s Preparing to unpack .../132-libjs-lunr_2.3.9~dfsg-2_all.deb ... 815s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 815s Selecting previously unselected package libjs-prettify. 815s Preparing to unpack .../133-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 815s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 815s Selecting previously unselected package libkpathsea6:arm64. 815s Preparing to unpack .../134-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ... 815s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ... 815s Selecting previously unselected package liblapack3:arm64. 815s 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libncurses-dev:arm64 (6.5+20250216-2) ... 816s Selecting previously unselected package libthai-data. 816s Preparing to unpack .../141-libthai-data_0.1.29-2build1_all.deb ... 816s Unpacking libthai-data (0.1.29-2build1) ... 816s Selecting previously unselected package libthai0:arm64. 816s Preparing to unpack .../142-libthai0_0.1.29-2build1_arm64.deb ... 816s Unpacking libthai0:arm64 (0.1.29-2build1) ... 816s Selecting previously unselected package libpango-1.0-0:arm64. 816s Preparing to unpack .../143-libpango-1.0-0_1.56.1-1_arm64.deb ... 816s Unpacking libpango-1.0-0:arm64 (1.56.1-1) ... 816s Selecting previously unselected package libpangoft2-1.0-0:arm64. 816s Preparing to unpack .../144-libpangoft2-1.0-0_1.56.1-1_arm64.deb ... 816s Unpacking libpangoft2-1.0-0:arm64 (1.56.1-1) ... 816s Selecting previously unselected package libpangocairo-1.0-0:arm64. 816s Preparing to unpack .../145-libpangocairo-1.0-0_1.56.1-1_arm64.deb ... 816s Unpacking libpangocairo-1.0-0:arm64 (1.56.1-1) ... 816s Selecting previously unselected package libpaper2:arm64. 816s Preparing to unpack .../146-libpaper2_2.2.5-0.3_arm64.deb ... 816s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 816s Selecting previously unselected package libpaper-utils. 816s Preparing to unpack .../147-libpaper-utils_2.2.5-0.3_arm64.deb ... 816s Unpacking libpaper-utils (2.2.5-0.3) ... 816s Selecting previously unselected package libpcre2-16-0:arm64. 816s Preparing to unpack .../148-libpcre2-16-0_10.45-1_arm64.deb ... 816s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 816s Selecting previously unselected package libpcre2-32-0:arm64. 816s Preparing to unpack .../149-libpcre2-32-0_10.45-1_arm64.deb ... 816s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 816s Selecting previously unselected package libpcre2-posix3:arm64. 816s Preparing to unpack .../150-libpcre2-posix3_10.45-1_arm64.deb ... 816s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 816s Selecting previously unselected package libpcre2-dev:arm64. 816s Preparing to unpack .../151-libpcre2-dev_10.45-1_arm64.deb ... 816s Unpacking libpcre2-dev:arm64 (10.45-1) ... 816s Selecting previously unselected package libpng-dev:arm64. 816s Preparing to unpack .../152-libpng-dev_1.6.47-1_arm64.deb ... 816s Unpacking libpng-dev:arm64 (1.6.47-1) ... 816s Selecting previously unselected package libpotrace0:arm64. 816s Preparing to unpack .../153-libpotrace0_1.16-2build1_arm64.deb ... 816s Unpacking libpotrace0:arm64 (1.16-2build1) ... 816s Selecting previously unselected package libptexenc1:arm64. 816s Preparing to unpack .../154-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 816s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 816s Selecting previously unselected package libreadline-dev:arm64. 816s Preparing to unpack .../155-libreadline-dev_8.2-6_arm64.deb ... 816s Unpacking libreadline-dev:arm64 (8.2-6) ... 816s Selecting previously unselected package libsharpyuv0:arm64. 816s Preparing to unpack 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.../161-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 816s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 817s Selecting previously unselected package libjbig0:arm64. 817s Preparing to unpack .../162-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 817s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 817s Selecting previously unselected package libwebp7:arm64. 817s Preparing to unpack .../163-libwebp7_1.5.0-0.1_arm64.deb ... 817s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 817s Selecting previously unselected package libtiff6:arm64. 817s Preparing to unpack .../164-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 817s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 817s Selecting previously unselected package libxft2:arm64. 817s Preparing to unpack .../165-libxft2_2.3.6-1build1_arm64.deb ... 817s Unpacking libxft2:arm64 (2.3.6-1build1) ... 817s Selecting previously unselected package libxss1:arm64. 817s Preparing to unpack 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(2:1.0.16-1) ... 817s Selecting previously unselected package libxi6:arm64. 817s Preparing to unpack .../172-libxi6_2%3a1.8.2-1_arm64.deb ... 817s Unpacking libxi6:arm64 (2:1.8.2-1) ... 817s Selecting previously unselected package libzzip-0-13t64:arm64. 817s Preparing to unpack .../173-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 817s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 817s Selecting previously unselected package zip. 817s Preparing to unpack .../174-zip_3.0-14ubuntu2_arm64.deb ... 817s Unpacking zip (3.0-14ubuntu2) ... 817s Selecting previously unselected package unzip. 817s Preparing to unpack .../175-unzip_6.0-28ubuntu6_arm64.deb ... 817s Unpacking unzip (6.0-28ubuntu6) ... 817s Selecting previously unselected package xdg-utils. 817s Preparing to unpack .../176-xdg-utils_1.2.1-2ubuntu1_all.deb ... 817s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 817s Selecting previously unselected package r-base-core. 817s Preparing to unpack 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unselected package pandoc-data. 818s Preparing to unpack .../183-pandoc-data_3.1.11.1-3build1_all.deb ... 818s Unpacking pandoc-data (3.1.11.1-3build1) ... 818s Selecting previously unselected package pandoc. 818s Preparing to unpack .../184-pandoc_3.1.11.1+ds-2_arm64.deb ... 818s Unpacking pandoc (3.1.11.1+ds-2) ... 819s Selecting previously unselected package liblzma-dev:arm64. 819s Preparing to unpack .../185-liblzma-dev_5.6.4-1_arm64.deb ... 819s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 819s Selecting previously unselected package libtirpc-dev:arm64. 819s Preparing to unpack .../186-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 819s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 819s Selecting previously unselected package r-base-dev. 819s Preparing to unpack .../187-r-base-dev_4.4.3-1_all.deb ... 819s Unpacking r-base-dev (4.4.3-1) ... 819s Selecting previously unselected package pkg-r-autopkgtest. 819s Preparing to unpack .../188-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 819s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 819s Selecting previously unselected package r-bioc-biocgenerics. 819s Preparing to unpack .../189-r-bioc-biocgenerics_0.52.0-2_all.deb ... 819s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 819s Selecting previously unselected package r-bioc-alabaster.schemas. 819s Preparing to unpack .../190-r-bioc-alabaster.schemas_1.6.0+ds-2_all.deb ... 819s Unpacking r-bioc-alabaster.schemas (1.6.0+ds-2) ... 819s Selecting previously unselected package r-bioc-s4vectors. 819s Preparing to unpack .../191-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 819s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 819s Selecting previously unselected package r-bioc-rhdf5lib. 819s Preparing to unpack .../192-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_arm64.deb ... 819s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 819s Selecting previously unselected package r-bioc-rhdf5filters. 819s Preparing to unpack .../193-r-bioc-rhdf5filters_1.18.0+dfsg-2_arm64.deb ... 819s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 819s Selecting previously unselected package r-bioc-rhdf5. 819s Preparing to unpack .../194-r-bioc-rhdf5_2.50.2+dfsg-1build1_arm64.deb ... 819s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 819s Selecting previously unselected package r-cran-jsonlite. 819s Preparing to unpack .../195-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 819s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 819s Selecting previously unselected package r-cran-pkgkitten. 819s Preparing to unpack .../196-r-cran-pkgkitten_0.2.4-1_all.deb ... 819s Unpacking r-cran-pkgkitten (0.2.4-1) ... 820s Selecting previously unselected package r-cran-rcpp. 820s Preparing to unpack .../197-r-cran-rcpp_1.0.14-1_arm64.deb ... 820s Unpacking r-cran-rcpp (1.0.14-1) ... 820s Selecting previously unselected package r-bioc-alabaster.base. 820s Preparing to unpack .../198-r-bioc-alabaster.base_1.6.1+ds-2build1_arm64.deb ... 820s Unpacking r-bioc-alabaster.base (1.6.1+ds-2build1) ... 820s Selecting previously unselected package r-cran-lattice. 820s Preparing to unpack .../199-r-cran-lattice_0.22-6-1_arm64.deb ... 820s Unpacking r-cran-lattice (0.22-6-1) ... 820s Selecting previously unselected package r-cran-matrix. 820s Preparing to unpack .../200-r-cran-matrix_1.7-3-1_arm64.deb ... 820s Unpacking r-cran-matrix (1.7-3-1) ... 820s Selecting previously unselected package r-cran-matrixstats. 820s Preparing to unpack .../201-r-cran-matrixstats_1.5.0-1_arm64.deb ... 820s Unpacking r-cran-matrixstats (1.5.0-1) ... 820s Selecting previously unselected package r-bioc-matrixgenerics. 820s Preparing to unpack .../202-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 820s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 820s Selecting previously unselected package r-bioc-iranges. 820s Preparing to unpack .../203-r-bioc-iranges_2.40.1-2_arm64.deb ... 820s Unpacking r-bioc-iranges (2.40.1-2) ... 820s Selecting previously unselected package r-cran-abind. 820s Preparing to unpack .../204-r-cran-abind_1.4-8-1_all.deb ... 820s Unpacking r-cran-abind (1.4-8-1) ... 820s Selecting previously unselected package r-cran-crayon. 820s Preparing to unpack .../205-r-cran-crayon_1.5.3-1_all.deb ... 820s Unpacking r-cran-crayon (1.5.3-1) ... 820s Selecting previously unselected package r-bioc-s4arrays. 820s Preparing to unpack .../206-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 820s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 820s Selecting previously unselected package r-bioc-zlibbioc. 820s Preparing to unpack .../207-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 820s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 820s Selecting previously unselected package r-bioc-xvector. 820s Preparing to unpack .../208-r-bioc-xvector_0.46.0-2_arm64.deb ... 820s Unpacking r-bioc-xvector (0.46.0-2) ... 820s Selecting previously unselected package r-bioc-sparsearray. 820s Preparing to unpack .../209-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 820s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 820s Selecting previously unselected package r-bioc-delayedarray. 820s Preparing to unpack .../210-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 820s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 820s Selecting previously unselected package r-bioc-hdf5array. 820s Preparing to unpack .../211-r-bioc-hdf5array_1.34.0-2build1_arm64.deb ... 820s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 820s Selecting previously unselected package r-bioc-alabaster.matrix. 820s Preparing to unpack .../212-r-bioc-alabaster.matrix_1.6.1+ds-2_arm64.deb ... 820s Unpacking r-bioc-alabaster.matrix (1.6.1+ds-2) ... 820s Selecting previously unselected package r-cran-curl. 821s Preparing to unpack .../213-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 821s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 821s Selecting previously unselected package r-cran-mime. 821s Preparing to unpack .../214-r-cran-mime_0.12-2_arm64.deb ... 821s Unpacking r-cran-mime (0.12-2) ... 821s Selecting previously unselected package r-cran-sys. 821s Preparing to unpack .../215-r-cran-sys_3.4.3-1_arm64.deb ... 821s Unpacking r-cran-sys (3.4.3-1) ... 821s Selecting previously unselected package r-cran-askpass. 821s Preparing to unpack .../216-r-cran-askpass_1.2.1-1_arm64.deb ... 821s Unpacking r-cran-askpass (1.2.1-1) ... 821s Selecting previously unselected package r-cran-openssl. 821s Preparing to unpack .../217-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 821s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 821s Selecting previously unselected package r-cran-r6. 821s Preparing to unpack .../218-r-cran-r6_2.6.1-1_all.deb ... 821s Unpacking r-cran-r6 (2.6.1-1) ... 821s Selecting previously unselected package r-cran-httr. 821s Preparing to unpack .../219-r-cran-httr_1.4.7+dfsg-1_all.deb ... 821s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 821s Selecting previously unselected package r-bioc-ucsc.utils. 821s Preparing to unpack .../220-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 821s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 821s Selecting previously unselected package r-bioc-genomeinfodbdata. 821s Preparing to unpack .../221-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 821s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 821s Selecting previously unselected package r-bioc-genomeinfodb. 821s Preparing to unpack .../222-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 821s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 821s Selecting previously unselected package r-bioc-genomicranges. 821s Preparing to unpack .../223-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 821s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 821s Selecting previously unselected package r-bioc-alabaster.ranges. 821s Preparing to unpack .../224-r-bioc-alabaster.ranges_1.6.0+ds-2_all.deb ... 821s Unpacking r-bioc-alabaster.ranges (1.6.0+ds-2) ... 821s Selecting previously unselected package r-bioc-biobase. 821s Preparing to unpack .../225-r-bioc-biobase_2.66.0-2_arm64.deb ... 821s Unpacking r-bioc-biobase (2.66.0-2) ... 821s Selecting previously unselected package r-bioc-summarizedexperiment. 821s Preparing to unpack .../226-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 821s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 821s Selecting previously unselected package r-bioc-singlecellexperiment. 821s Preparing to unpack .../227-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 821s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 821s Selecting previously unselected package r-bioc-alabaster.se. 821s Preparing to unpack .../228-r-bioc-alabaster.se_1.6.0+ds-2_all.deb ... 821s Unpacking r-bioc-alabaster.se (1.6.0+ds-2) ... 821s Selecting previously unselected package r-bioc-alabaster.sce. 821s Preparing to unpack .../229-r-bioc-alabaster.sce_1.6.0+ds-2_all.deb ... 821s Unpacking r-bioc-alabaster.sce (1.6.0+ds-2) ... 821s Selecting previously unselected package r-cran-dbi. 821s Preparing to unpack .../230-r-cran-dbi_1.2.3-1_all.deb ... 821s Unpacking r-cran-dbi (1.2.3-1) ... 821s Selecting previously unselected package r-cran-bit. 821s Preparing to unpack .../231-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 821s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 821s Selecting previously unselected package r-cran-bit64. 822s Preparing to unpack .../232-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 822s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 822s Selecting previously unselected package r-cran-rlang. 822s Preparing to unpack .../233-r-cran-rlang_1.1.5-1_arm64.deb ... 822s Unpacking r-cran-rlang (1.1.5-1) ... 822s Selecting previously unselected package r-cran-cli. 822s Preparing to unpack .../234-r-cran-cli_3.6.4-1_arm64.deb ... 822s Unpacking r-cran-cli (3.6.4-1) ... 822s Selecting previously unselected package r-cran-glue. 822s Preparing to unpack .../235-r-cran-glue_1.8.0-1_arm64.deb ... 822s Unpacking r-cran-glue (1.8.0-1) ... 822s Selecting previously unselected package r-cran-lifecycle. 822s Preparing to unpack .../236-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 822s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 822s Selecting previously unselected package r-cran-vctrs. 822s Preparing to unpack .../237-r-cran-vctrs_0.6.5-1_arm64.deb ... 822s Unpacking r-cran-vctrs (0.6.5-1) ... 822s Selecting previously unselected package r-cran-blob. 822s Preparing to unpack .../238-r-cran-blob_1.2.4-1_all.deb ... 822s Unpacking r-cran-blob (1.2.4-1) ... 822s Selecting previously unselected package r-cran-fastmap. 822s Preparing to unpack .../239-r-cran-fastmap_1.2.0-1_arm64.deb ... 822s Unpacking r-cran-fastmap (1.2.0-1) ... 822s Selecting previously unselected package r-cran-cachem. 822s Preparing to unpack .../240-r-cran-cachem_1.1.0-1_arm64.deb ... 822s Unpacking r-cran-cachem (1.1.0-1) ... 822s Selecting previously unselected package r-cran-memoise. 822s Preparing to unpack .../241-r-cran-memoise_2.0.1-1_all.deb ... 822s Unpacking r-cran-memoise (2.0.1-1) ... 822s Selecting previously unselected package r-cran-pkgconfig. 822s Preparing to unpack .../242-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 822s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 822s Selecting previously unselected package r-cran-plogr. 822s Preparing to unpack .../243-r-cran-plogr_0.2.0-3build1_all.deb ... 822s Unpacking r-cran-plogr (0.2.0-3build1) ... 822s Selecting previously unselected package r-cran-cpp11. 822s Preparing to unpack .../244-r-cran-cpp11_0.5.2-1_all.deb ... 822s Unpacking r-cran-cpp11 (0.5.2-1) ... 822s Selecting previously unselected package r-cran-rsqlite. 822s Preparing to unpack .../245-r-cran-rsqlite_2.3.9-1_arm64.deb ... 822s Unpacking r-cran-rsqlite (2.3.9-1) ... 822s Selecting previously unselected package r-cran-png. 822s Preparing to unpack .../246-r-cran-png_0.1-8-1build2_arm64.deb ... 822s Unpacking r-cran-png (0.1-8-1build2) ... 822s Selecting previously unselected package r-bioc-biostrings. 822s Preparing to unpack .../247-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 822s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 822s Selecting previously unselected package r-bioc-keggrest. 822s Preparing to unpack .../248-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 822s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 822s Selecting previously unselected package r-bioc-annotationdbi. 822s Preparing to unpack .../249-r-bioc-annotationdbi_1.68.0-2_all.deb ... 822s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 822s Selecting previously unselected package r-cran-lazyeval. 823s Preparing to unpack .../250-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 823s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 823s Selecting previously unselected package r-bioc-annotationfilter. 823s Preparing to unpack .../251-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 823s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 823s Selecting previously unselected package r-cran-generics. 823s Preparing to unpack .../252-r-cran-generics_0.1.3-1_all.deb ... 823s Unpacking r-cran-generics (0.1.3-1) ... 823s Selecting previously unselected package r-cran-magrittr. 823s Preparing to unpack .../253-r-cran-magrittr_2.0.3-1_arm64.deb ... 823s Unpacking r-cran-magrittr (2.0.3-1) ... 823s Selecting previously unselected package r-cran-utf8. 823s Preparing to unpack .../254-r-cran-utf8_1.2.4-1_arm64.deb ... 823s Unpacking r-cran-utf8 (1.2.4-1) ... 823s Selecting previously unselected package r-cran-pillar. 823s Preparing to unpack .../255-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 823s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 823s Selecting previously unselected package r-cran-fansi. 823s Preparing to unpack .../256-r-cran-fansi_1.0.5-1_arm64.deb ... 823s Unpacking r-cran-fansi (1.0.5-1) ... 823s Selecting previously unselected package r-cran-tibble. 823s Preparing to unpack .../257-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 823s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 823s Selecting previously unselected package r-cran-withr. 823s Preparing to unpack .../258-r-cran-withr_3.0.2+dfsg-1_all.deb ... 823s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 823s Selecting previously unselected package r-cran-tidyselect. 823s Preparing to unpack .../259-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 823s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 823s Selecting previously unselected package r-cran-dplyr. 823s Preparing to unpack .../260-r-cran-dplyr_1.1.4-4_arm64.deb ... 823s Unpacking r-cran-dplyr (1.1.4-4) ... 823s Selecting previously unselected package r-cran-purrr. 823s Preparing to unpack .../261-r-cran-purrr_1.0.4-1_arm64.deb ... 823s Unpacking r-cran-purrr (1.0.4-1) ... 823s Selecting previously unselected package r-cran-stringi. 823s Preparing to unpack .../262-r-cran-stringi_1.8.4-1build1_arm64.deb ... 823s Unpacking r-cran-stringi (1.8.4-1build1) ... 823s Selecting previously unselected package r-cran-stringr. 823s Preparing to unpack .../263-r-cran-stringr_1.5.1-1_all.deb ... 823s Unpacking r-cran-stringr (1.5.1-1) ... 823s Selecting previously unselected package r-cran-tidyr. 823s Preparing to unpack .../264-r-cran-tidyr_1.3.1-1_arm64.deb ... 823s Unpacking r-cran-tidyr (1.3.1-1) ... 823s Selecting previously unselected package r-cran-dbplyr. 823s Preparing to unpack .../265-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 823s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 823s Selecting previously unselected package r-cran-filelock. 823s Preparing to unpack .../266-r-cran-filelock_1.0.3-1_arm64.deb ... 823s Unpacking r-cran-filelock (1.0.3-1) ... 823s Selecting previously unselected package r-bioc-biocfilecache. 823s Preparing to unpack .../267-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 823s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 823s Selecting previously unselected package r-cran-biocmanager. 823s Preparing to unpack .../268-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 823s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 823s Selecting previously unselected package r-bioc-biocversion. 823s Preparing to unpack .../269-r-bioc-biocversion_3.20.0-2_all.deb ... 823s Unpacking r-bioc-biocversion (3.20.0-2) ... 823s Selecting previously unselected package r-cran-rappdirs. 824s Preparing to unpack .../270-r-cran-rappdirs_0.3.3-1_arm64.deb ... 824s Unpacking r-cran-rappdirs (0.3.3-1) ... 824s Selecting previously unselected package r-cran-yaml. 824s Preparing to unpack .../271-r-cran-yaml_2.3.10-1_arm64.deb ... 824s Unpacking r-cran-yaml (2.3.10-1) ... 824s Selecting previously unselected package r-bioc-annotationhub. 824s Preparing to unpack .../272-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 824s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 824s Selecting previously unselected package r-bioc-assorthead. 824s Preparing to unpack .../273-r-bioc-assorthead_1.0.1+ds-2_all.deb ... 824s Unpacking r-bioc-assorthead (1.0.1+ds-2) ... 824s Selecting previously unselected package r-bioc-beachmat. 824s Preparing to unpack .../274-r-bioc-beachmat_2.22.0+ds-2_arm64.deb ... 824s Unpacking r-bioc-beachmat (2.22.0+ds-2) ... 824s Selecting previously unselected package r-bioc-biocio. 824s Preparing to unpack .../275-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 824s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 824s Selecting previously unselected package r-bioc-biocneighbors. 824s Preparing to unpack .../276-r-bioc-biocneighbors_2.0.1+ds-2_arm64.deb ... 824s Unpacking r-bioc-biocneighbors (2.0.1+ds-2) ... 824s Selecting previously unselected package r-cran-formatr. 824s Preparing to unpack .../277-r-cran-formatr_1.14-2_all.deb ... 824s Unpacking r-cran-formatr (1.14-2) ... 824s Selecting previously unselected package r-cran-lambda.r. 824s Preparing to unpack .../278-r-cran-lambda.r_1.2.4-2build1_all.deb ... 824s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 824s Selecting previously unselected package r-cran-futile.options. 824s Preparing to unpack .../279-r-cran-futile.options_1.0.1-3build1_all.deb ... 824s Unpacking r-cran-futile.options (1.0.1-3build1) ... 824s Selecting previously unselected package r-cran-futile.logger. 824s Preparing to unpack .../280-r-cran-futile.logger_1.4.3-4build1_all.deb ... 824s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 824s Selecting previously unselected package r-cran-snow. 824s Preparing to unpack .../281-r-cran-snow_1%3a0.4.4-2_all.deb ... 824s Unpacking r-cran-snow (1:0.4.4-2) ... 824s Selecting previously unselected package r-cran-codetools. 824s Preparing to unpack .../282-r-cran-codetools_0.2-20-1_all.deb ... 824s Unpacking r-cran-codetools (0.2-20-1) ... 824s Selecting previously unselected package r-cran-bh. 824s Preparing to unpack .../283-r-cran-bh_1.84.0-1_all.deb ... 824s Unpacking r-cran-bh (1.84.0-1) ... 824s Selecting previously unselected package r-bioc-biocparallel. 824s Preparing to unpack .../284-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 824s Unpacking r-bioc-biocparallel (1.40.0-2) ... 824s Selecting previously unselected package r-bioc-scaledmatrix. 824s Preparing to unpack .../285-r-bioc-scaledmatrix_1.14.0+dfsg-2_all.deb ... 824s Unpacking r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 824s Selecting previously unselected package r-cran-irlba. 824s Preparing to unpack .../286-r-cran-irlba_2.3.5.1-4_arm64.deb ... 824s Unpacking r-cran-irlba (2.3.5.1-4) ... 824s Selecting previously unselected package r-cran-rsvd. 824s Preparing to unpack .../287-r-cran-rsvd_1.0.5-1_all.deb ... 824s Unpacking r-cran-rsvd (1.0.5-1) ... 824s Selecting previously unselected package r-bioc-biocsingular. 824s Preparing to unpack .../288-r-bioc-biocsingular_1.22.0+ds-2_arm64.deb ... 824s Unpacking r-bioc-biocsingular (1.22.0+ds-2) ... 824s Selecting previously unselected package r-cran-base64enc. 824s Preparing to unpack .../289-r-cran-base64enc_0.1-3-3_arm64.deb ... 824s Unpacking r-cran-base64enc (0.1-3-3) ... 824s Selecting previously unselected package r-cran-digest. 824s Preparing to unpack .../290-r-cran-digest_0.6.37-1_arm64.deb ... 824s Unpacking r-cran-digest (0.6.37-1) ... 825s Selecting previously unselected package r-cran-htmltools. 825s Preparing to unpack .../291-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 825s Unpacking r-cran-htmltools (0.5.8.1-1) ... 825s Selecting previously unselected package r-cran-evaluate. 825s Preparing to unpack .../292-r-cran-evaluate_1.0.3-1_all.deb ... 825s Unpacking r-cran-evaluate (1.0.3-1) ... 825s Selecting previously unselected package r-cran-xfun. 825s Preparing to unpack .../293-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 825s Unpacking r-cran-xfun (0.51+dfsg-1) ... 825s Selecting previously unselected package r-cran-highr. 825s Preparing to unpack .../294-r-cran-highr_0.11+dfsg-1_all.deb ... 825s Unpacking r-cran-highr (0.11+dfsg-1) ... 825s Selecting previously unselected package libjs-mathjax. 825s Preparing to unpack .../295-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 825s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 825s Selecting previously unselected package r-cran-knitr. 825s Preparing to unpack .../296-r-cran-knitr_1.49+dfsg-1_all.deb ... 825s Unpacking r-cran-knitr (1.49+dfsg-1) ... 825s Selecting previously unselected package r-cran-jquerylib. 825s Preparing to unpack .../297-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 825s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 825s Selecting previously unselected package r-cran-fs. 825s Preparing to unpack .../298-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 825s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 825s Selecting previously unselected package r-cran-sass. 825s Preparing to unpack .../299-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 825s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 825s Selecting previously unselected package r-cran-bslib. 825s Preparing to unpack .../300-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 825s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 826s Selecting previously unselected package r-cran-fontawesome. 826s Preparing to unpack .../301-r-cran-fontawesome_0.5.3-1_all.deb ... 826s Unpacking r-cran-fontawesome (0.5.3-1) ... 826s Selecting previously unselected package r-cran-tinytex. 826s Preparing to unpack .../302-r-cran-tinytex_0.56-1_all.deb ... 826s Unpacking r-cran-tinytex (0.56-1) ... 826s Selecting previously unselected package libjs-modernizr. 826s Preparing to unpack .../303-libjs-modernizr_3.13.0-0.1_all.deb ... 826s Unpacking libjs-modernizr (3.13.0-0.1) ... 826s Selecting previously unselected package r-cran-later. 826s Preparing to unpack .../304-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 826s Unpacking r-cran-later (1.4.1+dfsg-1) ... 826s Selecting previously unselected package r-cran-promises. 826s Preparing to unpack .../305-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 826s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 826s Selecting previously unselected package r-cran-httpuv. 826s Preparing to unpack .../306-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 826s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 826s Selecting previously unselected package r-cran-xtable. 826s Preparing to unpack .../307-r-cran-xtable_1%3a1.8-4-2_all.deb ... 826s Unpacking r-cran-xtable (1:1.8-4-2) ... 826s Selecting previously unselected package r-cran-sourcetools. 826s Preparing to unpack .../308-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 826s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 826s Selecting previously unselected package r-cran-commonmark. 826s Preparing to unpack .../309-r-cran-commonmark_1.9.2-2_arm64.deb ... 826s Unpacking r-cran-commonmark (1.9.2-2) ... 826s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 826s Preparing to unpack .../310-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 826s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 826s Selecting previously unselected package r-cran-shiny. 826s Preparing to unpack .../311-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 826s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 826s Selecting previously unselected package r-cran-rmarkdown. 826s Preparing to unpack .../312-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 826s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 826s Selecting previously unselected package r-cran-bookdown. 826s Preparing to unpack .../313-r-cran-bookdown_0.42+dfsg-1_all.deb ... 826s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 826s Selecting previously unselected package tex-common. 826s Preparing to unpack .../314-tex-common_6.19_all.deb ... 826s Unpacking tex-common (6.19) ... 826s Selecting previously unselected package t1utils. 826s Preparing to unpack .../315-t1utils_1.41-4build3_arm64.deb ... 826s Unpacking t1utils (1.41-4build3) ... 826s Selecting previously unselected package texlive-binaries. 827s Preparing to unpack .../316-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 827s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 827s Selecting previously unselected package texlive-base. 827s Preparing to unpack .../317-texlive-base_2024.20250114-1_all.deb ... 827s Unpacking texlive-base (2024.20250114-1) ... 828s Selecting previously unselected package texlive-latex-base. 828s Preparing to unpack .../318-texlive-latex-base_2024.20250114-1_all.deb ... 828s Unpacking texlive-latex-base (2024.20250114-1) ... 828s Selecting previously unselected package texlive-bibtex-extra. 828s Preparing to unpack .../319-texlive-bibtex-extra_2024.20250114-1_all.deb ... 828s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 830s Selecting previously unselected package r-bioc-biocstyle. 830s Preparing to unpack .../320-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 830s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 830s Selecting previously unselected package r-cran-cluster. 830s Preparing to unpack .../321-r-cran-cluster_2.1.8-1_arm64.deb ... 830s Unpacking r-cran-cluster (2.1.8-1) ... 830s Selecting previously unselected package r-cran-igraph. 830s Preparing to unpack .../322-r-cran-igraph_2.1.4-1_arm64.deb ... 830s Unpacking r-cran-igraph (2.1.4-1) ... 830s Selecting previously unselected package r-bioc-bluster. 830s Preparing to unpack .../323-r-bioc-bluster_1.16.0+dfsg-2_arm64.deb ... 830s Unpacking r-bioc-bluster (1.16.0+dfsg-2) ... 830s Selecting previously unselected package r-bioc-sparsematrixstats. 830s Preparing to unpack .../324-r-bioc-sparsematrixstats_1.18.0+dfsg-2_arm64.deb ... 830s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 830s Selecting previously unselected package r-bioc-delayedmatrixstats. 830s Preparing to unpack .../325-r-bioc-delayedmatrixstats_1.28.1+ds-1_all.deb ... 830s Unpacking r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 830s Selecting previously unselected package r-cran-statmod. 830s Preparing to unpack .../326-r-cran-statmod_1.5.0-1_arm64.deb ... 830s Unpacking r-cran-statmod (1.5.0-1) ... 830s Selecting previously unselected package r-bioc-limma. 830s Preparing to unpack .../327-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ... 830s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 830s Selecting previously unselected package r-cran-locfit. 830s Preparing to unpack .../328-r-cran-locfit_1.5-9.12-1_arm64.deb ... 830s Unpacking r-cran-locfit (1.5-9.12-1) ... 830s Selecting previously unselected package r-bioc-edger. 830s Preparing to unpack .../329-r-bioc-edger_4.4.2+dfsg-1_arm64.deb ... 830s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 830s Selecting previously unselected package r-cran-xml. 830s Preparing to unpack .../330-r-cran-xml_3.99-0.18-1_arm64.deb ... 830s Unpacking r-cran-xml (3.99-0.18-1) ... 830s Selecting previously unselected package r-cran-bitops. 830s Preparing to unpack .../331-r-cran-bitops_1.0-9-1_arm64.deb ... 830s Unpacking r-cran-bitops (1.0-9-1) ... 830s Selecting previously unselected package r-bioc-rhtslib. 830s Preparing to unpack .../332-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 830s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 831s Selecting previously unselected package r-bioc-rsamtools. 831s Preparing to unpack .../333-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 831s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 831s Selecting previously unselected package r-bioc-genomicalignments. 831s Preparing to unpack .../334-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 831s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 831s Selecting previously unselected package r-cran-rcurl. 831s Preparing to unpack .../335-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 831s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 831s Selecting previously unselected package r-cran-rjson. 831s Preparing to unpack .../336-r-cran-rjson_0.2.23-1_arm64.deb ... 831s Unpacking r-cran-rjson (0.2.23-1) ... 831s Selecting previously unselected package r-cran-restfulr. 831s Preparing to unpack .../337-r-cran-restfulr_0.0.15-1_arm64.deb ... 831s Unpacking r-cran-restfulr (0.0.15-1) ... 831s Selecting previously unselected package r-bioc-rtracklayer. 831s Preparing to unpack .../338-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 831s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 831s Selecting previously unselected package r-bioc-genomicfeatures. 831s Preparing to unpack .../339-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 831s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 831s Selecting previously unselected package r-bioc-protgenerics. 831s Preparing to unpack .../340-r-bioc-protgenerics_1.38.0-2_all.deb ... 831s Unpacking r-bioc-protgenerics (1.38.0-2) ... 831s Selecting previously unselected package r-bioc-ensembldb. 831s Preparing to unpack .../341-r-bioc-ensembldb_2.30.0+dfsg-3_all.deb ... 831s Unpacking r-bioc-ensembldb (2.30.0+dfsg-3) ... 831s Selecting previously unselected package r-bioc-experimenthub. 831s Preparing to unpack .../342-r-bioc-experimenthub_2.14.0+ds-2_all.deb ... 831s Unpacking r-bioc-experimenthub (2.14.0+ds-2) ... 831s Selecting previously unselected package r-cran-httr2. 831s Preparing to unpack .../343-r-cran-httr2_1.1.1-1_all.deb ... 831s Unpacking r-cran-httr2 (1.1.1-1) ... 831s Selecting previously unselected package r-bioc-gypsum. 831s Preparing to unpack .../344-r-bioc-gypsum_1.2.0+ds-2_all.deb ... 831s Unpacking r-bioc-gypsum (1.2.0+ds-2) ... 831s Selecting previously unselected package r-bioc-metapod. 831s Preparing to unpack .../345-r-bioc-metapod_1.14.0+dfsg-2_arm64.deb ... 831s Unpacking r-bioc-metapod (1.14.0+dfsg-2) ... 831s Selecting previously unselected package r-bioc-scuttle. 831s Preparing to unpack .../346-r-bioc-scuttle_1.16.0+dfsg-3_arm64.deb ... 831s Unpacking r-bioc-scuttle (1.16.0+dfsg-3) ... 832s Selecting previously unselected package r-cran-sitmo. 832s Preparing to unpack .../347-r-cran-sitmo_2.0.2-1_arm64.deb ... 832s Unpacking r-cran-sitmo (2.0.2-1) ... 832s Selecting previously unselected package r-cran-dqrng. 832s Preparing to unpack .../348-r-cran-dqrng_0.3.2+dfsg-1_arm64.deb ... 832s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 832s Selecting previously unselected package r-bioc-scran. 832s Preparing to unpack .../349-r-bioc-scran_1.34.0+dfsg-3_arm64.deb ... 832s Unpacking r-bioc-scran 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838s Setting up r-cran-praise (1.0.0-4build1) ... 838s Setting up r-cran-generics (0.1.3-1) ... 838s Setting up r-cran-base64enc (0.1-3-3) ... 838s Setting up r-cran-abind (1.4-8-1) ... 838s Setting up r-cran-digest (0.6.37-1) ... 838s Setting up r-cran-yaml (2.3.10-1) ... 838s Setting up r-cran-lambda.r (1.2.4-2build1) ... 838s Setting up r-bioc-protgenerics (1.38.0-2) ... 838s Setting up r-cran-evaluate (1.0.3-1) ... 838s Setting up r-cran-dbi (1.2.3-1) ... 838s Setting up r-cran-highr (0.11+dfsg-1) ... 838s Setting up r-cran-fansi (1.0.5-1) ... 838s Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 838s Setting up r-cran-snow (1:0.4.4-2) ... 838s Setting up r-cran-glue (1.8.0-1) ... 838s Setting up r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 838s Setting up r-cran-bit (4.6.0+dfsg-1) ... 838s Setting up r-cran-xtable (1:1.8-4-2) ... 838s Setting up r-cran-cli (3.6.4-1) ... 838s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 838s Setting up r-cran-bitops (1.0-9-1) ... 838s Setting up r-bioc-biocversion (3.20.0-2) ... 838s Setting up r-cran-rprojroot (2.0.4-2) ... 838s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 838s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 838s Setting up gcc (4:14.2.0-1ubuntu1) ... 838s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 838s Setting up r-cran-askpass (1.2.1-1) ... 838s Setting up r-cran-fastmap (1.2.0-1) ... 838s Setting up r-cran-png (0.1-8-1build2) ... 838s Setting up r-bioc-biobase (2.66.0-2) ... 838s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 838s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 838s Setting up r-cran-utf8 (1.2.4-1) ... 838s Setting up r-cran-stringi (1.8.4-1build1) ... 838s Setting up texlive-latex-base (2024.20250114-1) ... 838s Setting up r-cran-cpp11 (0.5.2-1) ... 838s Setting up r-cran-sitmo (2.0.2-1) ... 838s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 838s Setting up r-cran-futile.logger (1.4.3-4build1) ... 838s Setting up r-cran-waldo (0.6.1-2) ... 838s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 838s Setting up r-cran-later (1.4.1+dfsg-1) ... 838s Setting up r-cran-matrix (1.7-3-1) ... 838s Setting up r-cran-htmltools (0.5.8.1-1) ... 838s Setting up r-cran-tinytex (0.56-1) ... 838s Setting up r-cran-irlba (2.3.5.1-4) ... 838s Setting up r-cran-knitr (1.49+dfsg-1) ... 838s Setting up g++ (4:14.2.0-1ubuntu1) ... 838s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 838s Setting up r-cran-cachem (1.1.0-1) ... 838s Setting up r-cran-sass (0.4.9+dfsg-1) ... 838s Setting up build-essential (12.10ubuntu1) ... 838s Setting up r-bioc-iranges (2.40.1-2) ... 838s Setting up r-cran-dqrng (0.3.2+dfsg-1) ... 838s Setting up r-bioc-metapod (1.14.0+dfsg-2) ... 838s Setting up r-bioc-assorthead (1.0.1+ds-2) ... 838s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 838s Setting up r-cran-restfulr (0.0.15-1) ... 838s Setting up r-bioc-biocneighbors (2.0.1+ds-2) ... 838s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 838s Setting up r-cran-vctrs (0.6.5-1) ... 838s Setting up r-bioc-alabaster.schemas (1.6.0+ds-2) ... 838s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 838s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 838s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 838s Setting up r-cran-stringr (1.5.1-1) ... 838s Setting up r-bioc-biocparallel (1.40.0-2) ... 838s Setting up r-cran-callr (3.7.6-1) ... 838s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 838s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 838s Setting up r-cran-desc (1.4.3-1) ... 838s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 838s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 838s Setting up r-cran-fontawesome (0.5.3-1) ... 838s Setting up r-cran-igraph (2.1.4-1) ... 838s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 838s Setting up gfortran (4:14.2.0-1ubuntu1) ... 838s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 838s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 838s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 838s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 838s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 838s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 838s Setting up texlive-bibtex-extra (2024.20250114-1) ... 838s Setting up r-cran-rsvd (1.0.5-1) ... 838s Setting up r-cran-httr2 (1.1.1-1) ... 838s Setting up r-bioc-bluster (1.16.0+dfsg-2) ... 838s Setting up r-cran-httr (1.4.7+dfsg-1) ... 838s Setting up r-bioc-gypsum (1.2.0+ds-2) ... 838s Setting up r-bioc-alabaster.base (1.6.1+ds-2build1) ... 838s Setting up r-cran-memoise (2.0.1-1) ... 838s Setting up r-cran-promises (1.3.2+dfsg-1) ... 838s Setting up r-cran-purrr (1.0.4-1) ... 838s Setting up r-cran-blob (1.2.4-1) ... 838s Setting up r-bioc-xvector (0.46.0-2) ... 838s Setting up r-cran-pkgbuild (1.4.6-1) ... 838s Setting up r-cran-dplyr (1.1.4-4) ... 838s Setting up r-cran-rsqlite (2.3.9-1) ... 838s Setting up r-cran-pkgload (1.4.0-1) ... 838s Setting up r-base-dev (4.4.3-1) ... 838s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 838s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 838s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 838s Setting up r-cran-testthat (3.2.3-1) ... 838s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 838s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 838s Setting up r-cran-tidyr (1.3.1-1) ... 838s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 838s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 838s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 838s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 838s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 838s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 838s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 838s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 838s Setting up r-bioc-annotationfilter (1.30.0+dfsg-2) ... 838s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 838s Setting up r-bioc-alabaster.matrix (1.6.1+ds-2) ... 838s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 838s Setting up r-bioc-beachmat (2.22.0+ds-2) ... 838s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 838s Setting up r-bioc-scaledmatrix (1.14.0+dfsg-2) ... 838s Setting up r-cran-bookdown (0.42+dfsg-1) ... 838s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 838s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 838s Setting up r-bioc-biocsingular (1.22.0+ds-2) ... 838s Setting up r-bioc-alabaster.ranges (1.6.0+ds-2) ... 838s Setting up r-bioc-annotationdbi (1.68.0-2) ... 838s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 838s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 838s Setting up r-bioc-genomicalignments (1.42.0-2) ... 838s Setting up r-bioc-alabaster.se (1.6.0+ds-2) ... 838s Setting up r-bioc-rtracklayer (1.66.0-2) ... 838s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 838s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 838s Setting up r-bioc-experimenthub (2.14.0+ds-2) ... 838s Setting up r-bioc-scuttle (1.16.0+dfsg-3) ... 838s Setting up r-bioc-alabaster.sce (1.6.0+ds-2) ... 838s Setting up r-bioc-ensembldb (2.30.0+dfsg-3) ... 838s Setting up r-bioc-scran (1.34.0+dfsg-3) ... 838s Setting up r-bioc-scrnaseq (2.20.0+ds-2) ... 838s Processing triggers for man-db (2.13.0-1) ... 840s Processing triggers for install-info (7.1.1-1) ... 840s Processing triggers for libc-bin (2.41-1ubuntu2) ... 840s Processing triggers for tex-common (6.19) ... 841s Running updmap-sys. This may take some time... done. 841s Running mktexlsr /var/lib/texmf ... done. 841s Building format(s) --all. 879s This may take some time... done. 881s autopkgtest [11:57:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 881s autopkgtest [11:57:07]: test pkg-r-autopkgtest: [----------------------- 881s Test: Try to load the R library scuttle 881s 881s R version 4.4.3 (2025-02-28) -- "Trophy Case" 881s Copyright (C) 2025 The R Foundation for Statistical Computing 881s Platform: aarch64-unknown-linux-gnu 881s 881s R is free software and comes with ABSOLUTELY NO WARRANTY. 881s You are welcome to redistribute it under certain conditions. 881s Type 'license()' or 'licence()' for distribution details. 881s 881s R is a collaborative project with many contributors. 881s Type 'contributors()' for more information and 881s 'citation()' on how to cite R or R packages in publications. 881s 881s Type 'demo()' for some demos, 'help()' for on-line help, or 881s 'help.start()' for an HTML browser interface to help. 881s Type 'q()' to quit R. 881s 881s > library('scuttle') 881s Loading required package: SingleCellExperiment 881s Loading required package: SummarizedExperiment 881s Loading required package: MatrixGenerics 881s Loading required package: matrixStats 881s 881s Attaching package: ‘MatrixGenerics’ 881s 881s The following objects are masked from ‘package:matrixStats’: 881s 881s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 881s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 881s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 881s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 881s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 881s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 881s colWeightedMeans, colWeightedMedians, colWeightedSds, 881s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 881s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 881s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 881s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 881s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 881s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 881s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 881s rowWeightedSds, rowWeightedVars 881s 881s Loading required package: GenomicRanges 881s Loading required package: stats4 881s Loading required package: BiocGenerics 881s 881s Attaching package: ‘BiocGenerics’ 881s 881s The following objects are masked from ‘package:stats’: 881s 881s IQR, mad, sd, var, xtabs 881s 881s The following objects are masked from ‘package:base’: 881s 881s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 881s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 881s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 881s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 881s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 881s table, tapply, union, unique, unsplit, which.max, which.min 881s 881s Loading required package: S4Vectors 882s 882s Attaching package: ‘S4Vectors’ 882s 882s The following object is masked from ‘package:utils’: 882s 882s findMatches 882s 882s The following objects are masked from ‘package:base’: 882s 882s expand.grid, I, unname 882s 882s Loading required package: IRanges 883s Loading required package: GenomeInfoDb 883s Loading required package: Biobase 884s Welcome to Bioconductor 884s 884s Vignettes contain introductory material; view with 884s 'browseVignettes()'. To cite Bioconductor, see 884s 'citation("Biobase")', and for packages 'citation("pkgname")'. 884s 884s 884s Attaching package: ‘Biobase’ 884s 884s The following object is masked from ‘package:MatrixGenerics’: 884s 884s rowMedians 884s 884s The following objects are masked from ‘package:matrixStats’: 884s 884s anyMissing, rowMedians 884s 887s > 887s > 887s Other tests are currently unsupported! 887s They will be progressively added. 888s autopkgtest [11:57:14]: test pkg-r-autopkgtest: -----------------------] 888s pkg-r-autopkgtest PASS 888s autopkgtest [11:57:14]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 889s autopkgtest [11:57:15]: @@@@@@@@@@@@@@@@@@@@ summary 889s pkg-r-autopkgtest PASS 907s nova [W] Using flock in prodstack6-arm64 907s Creating nova instance adt-plucky-arm64-r-bioc-scuttle-20250315-114226-juju-7f2275-prod-proposed-migration-environment-2-628d17c4-4fe5-4922-8882-c69be9b77d26 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 907s nova [W] Timed out waiting for 105bb225-b14b-43b7-8572-fbcd7c8333c4 to get deleted.