0s autopkgtest [14:24:11]: starting date and time: 2025-03-15 14:24:11+0000 0s autopkgtest [14:24:11]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:24:11]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._q_4knly/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-10.secgroup --name adt-plucky-arm64-r-bioc-rsamtools-20250315-140420-juju-7f2275-prod-proposed-migration-environment-20-3e0fcc12-f6a9-4fc5-8a29-a53877d96bd6 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 146s autopkgtest [14:26:37]: testbed dpkg architecture: arm64 146s autopkgtest [14:26:37]: testbed apt version: 2.9.33 147s autopkgtest [14:26:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 147s autopkgtest [14:26:38]: testbed release detected to be: None 148s autopkgtest [14:26:39]: updating testbed package index (apt update) 148s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 148s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 148s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 149s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 149s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 149s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 149s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 149s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 149s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 149s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 149s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 150s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 150s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 150s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 150s Fetched 1094 kB in 2s (676 kB/s) 151s Reading package lists... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s Calculating upgrade... 154s Calculating upgrade... 155s The following packages will be upgraded: 155s python3-jinja2 strace 155s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Need to get 608 kB of archives. 155s After this operation, 11.3 kB of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 156s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 156s Fetched 608 kB in 1s (681 kB/s) 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 157s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 157s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 157s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 157s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 157s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 157s Setting up strace (6.13+ds-1ubuntu1) ... 157s Processing triggers for man-db (2.13.0-1) ... 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s Solving dependencies... 160s The following packages will be REMOVED: 160s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 160s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 160s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 160s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 161s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 161s After this operation, 267 MB disk space will be freed. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 161s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 161s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 161s Removing libpython3.12t64:arm64 (3.12.9-1) ... 161s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 161s Removing libnsl2:arm64 (1.3.0-3build3) ... 161s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 161s Removing libunwind8:arm64 (1.6.2-3.1) ... 161s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 162s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 164s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 164s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 164s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 164s /etc/kernel/postrm.d/initramfs-tools: 164s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 164s /etc/kernel/postrm.d/zz-flash-kernel: 164s flash-kernel: Kernel 6.11.0-8-generic has been removed. 164s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 165s /etc/kernel/postrm.d/zz-update-grub: 165s Sourcing file `/etc/default/grub' 165s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 165s Generating grub configuration file ... 165s Found linux image: /boot/vmlinuz-6.14.0-10-generic 165s Found initrd image: /boot/initrd.img-6.14.0-10-generic 165s Warning: os-prober will not be executed to detect other bootable partitions. 165s Systems on them will not be added to the GRUB boot configuration. 165s Check GRUB_DISABLE_OS_PROBER documentation entry. 165s Adding boot menu entry for UEFI Firmware Settings ... 165s done 166s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 166s Processing triggers for libc-bin (2.41-1ubuntu1) ... 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 166s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 166s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 166s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 166s autopkgtest [14:26:57]: upgrading testbed (apt dist-upgrade and autopurge) 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 169s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 171s Entering ResolveByKeep 172s 172s Calculating upgrade... 173s The following packages will be upgraded: 173s libc-bin libc-dev-bin libc6 libc6-dev locales 173s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 9530 kB of archives. 173s After this operation, 0 B of additional disk space will be used. 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 175s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 175s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 177s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 178s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 181s Preconfiguring packages ... 182s Fetched 9530 kB in 8s (1200 kB/s) 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 182s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 182s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 182s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 182s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 182s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 182s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 183s Setting up libc6:arm64 (2.41-1ubuntu2) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 183s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 183s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 183s Setting up libc-bin (2.41-1ubuntu2) ... 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 183s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 183s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 183s Setting up locales (2.41-1ubuntu2) ... 185s Generating locales (this might take a while)... 187s en_US.UTF-8... done 187s Generation complete. 187s Setting up libc-dev-bin (2.41-1ubuntu2) ... 187s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 187s Processing triggers for man-db (2.13.0-1) ... 188s Processing triggers for systemd (257.3-1ubuntu3) ... 189s Reading package lists... 190s Building dependency tree... 190s Reading state information... 191s Starting pkgProblemResolver with broken count: 0 191s Starting 2 pkgProblemResolver with broken count: 0 191s Done 192s Solving dependencies... 193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 193s autopkgtest [14:27:24]: rebooting testbed after setup commands that affected boot 227s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 234s autopkgtest [14:28:05]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 237s autopkgtest [14:28:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 241s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (dsc) [2381 B] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (tar) [2469 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rsamtools 2.22.0+dfsg-2 (diff) [7200 B] 241s gpgv: Signature made Sun Jan 12 19:28:33 2025 UTC 241s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 241s gpgv: issuer "crusoe@debian.org" 241s gpgv: Can't check signature: No public key 241s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.22.0+dfsg-2.dsc: no acceptable signature found 242s autopkgtest [14:28:13]: testing package r-bioc-rsamtools version 2.22.0+dfsg-2 243s autopkgtest [14:28:14]: build not needed 246s autopkgtest [14:28:17]: test pkg-r-autopkgtest: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s The following NEW packages will be installed: 248s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 248s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 248s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 248s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 248s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 248s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 248s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 248s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 248s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 248s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 248s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 248s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 248s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 248s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 248s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 248s libjs-popper.js libjs-prettify libjs-sifter.js 248s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 248s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 248s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 248s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 248s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 248s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 248s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 248s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 248s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 248s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 248s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 248s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 248s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 248s r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata 248s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 248s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-pwalign 248s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 248s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 248s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 248s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 248s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 248s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 248s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir 248s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome 248s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 248s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 248s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 248s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 248s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 248s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 248s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises 248s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 248s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 248s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 248s r-cran-sourcetools r-cran-sys r-cran-tinytex r-cran-vctrs r-cran-withr 248s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common 248s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 248s x11-common xdg-utils zip zlib1g-dev 248s 0 upgraded, 261 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 418 MB of archives. 248s After this operation, 1334 MB of additional disk space will be used. 248s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 249s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 258s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 258s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 258s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 258s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 258s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 258s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 258s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 262s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 262s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 264s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 265s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 266s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 269s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 285s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 286s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 286s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 286s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 287s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 297s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 297s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 297s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 297s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 297s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 297s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 297s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 298s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 298s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 298s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 298s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 299s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 299s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 303s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 305s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 306s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 306s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 316s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 316s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 316s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 316s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 316s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 316s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 316s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 316s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 316s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 316s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 316s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 325s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 325s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 325s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 325s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 325s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 325s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 325s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 326s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 326s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 326s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 326s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 326s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 326s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 326s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 327s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 337s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 338s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 338s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 338s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 338s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 338s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 338s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 338s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 338s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 339s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 339s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 339s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 339s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 339s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 339s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 339s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 339s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 340s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 340s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 340s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 340s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 340s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 342s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 347s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 347s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 347s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 347s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 347s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 347s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 347s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 348s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 348s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 348s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 348s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 348s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 348s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 348s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 348s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 352s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 352s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 352s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 352s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 352s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 352s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 352s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 352s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 352s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 352s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 352s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 353s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 353s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 353s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 353s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 353s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 353s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 353s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 354s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 354s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 354s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 354s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 355s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 355s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 355s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 355s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 355s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 355s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 382s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 382s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 382s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 382s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 382s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 383s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 383s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 405s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 405s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 405s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 405s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 406s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 406s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 406s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 406s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 408s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 409s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 411s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 411s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 412s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 412s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 413s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 415s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 415s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 415s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 416s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 416s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 416s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 416s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 416s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 416s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 416s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 416s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 417s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 417s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 417s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 417s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 418s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 418s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 418s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 418s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 419s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 419s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 419s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 419s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 419s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 430s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 434s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 434s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 445s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 445s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 450s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 450s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 450s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 450s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 451s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 451s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 451s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 451s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 451s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 452s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 452s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 453s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 453s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 453s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 454s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 454s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 454s Get:198 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 460s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 461s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 461s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 461s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 461s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 463s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 467s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 468s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 468s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 469s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 469s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 471s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 471s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 471s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 472s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 473s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 473s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 473s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 473s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 473s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 473s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 477s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 479s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 480s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 480s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 480s Get:224 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 480s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 490s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 514s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 515s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 577s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 577s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 578s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 578s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 581s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 581s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 581s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 581s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 582s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 582s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 584s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 585s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 585s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 585s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 586s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 588s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 589s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 591s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 592s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 592s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 592s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 595s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 595s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-pwalign arm64 1.2.0-2 [752 kB] 596s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 596s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 596s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 596s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-deldir arm64 2.0-4-1build1 [270 kB] 596s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcppeigen arm64 0.3.4.0.2-1 [1422 kB] 597s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 598s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 598s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 600s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-shortread arm64 1.64.0-3 [5243 kB] 603s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 604s Preconfiguring packages ... 604s Fetched 418 MB in 5min 55s (1175 kB/s) 604s Selecting previously unselected package libisl23:arm64. 605s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 605s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 605s Unpacking libisl23:arm64 (0.27-1) ... 605s Selecting previously unselected package libmpc3:arm64. 605s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 605s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 605s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 605s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 605s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 605s Selecting previously unselected package cpp-14. 605s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 605s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 605s Selecting previously unselected package cpp-aarch64-linux-gnu. 605s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 605s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 605s Selecting previously unselected package cpp. 605s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 605s Unpacking cpp (4:14.2.0-1ubuntu1) ... 605s Selecting previously unselected package libcc1-0:arm64. 605s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 605s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 605s Selecting previously unselected package libgomp1:arm64. 605s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 605s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 605s Selecting previously unselected package libitm1:arm64. 605s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 605s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 605s Selecting previously unselected package libasan8:arm64. 605s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 605s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 605s Selecting previously unselected package liblsan0:arm64. 605s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 605s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 605s Selecting previously unselected package libtsan2:arm64. 606s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 606s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 606s Selecting previously unselected package libubsan1:arm64. 606s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 606s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 606s Selecting previously unselected package libhwasan0:arm64. 606s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 606s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 606s Selecting previously unselected package libgcc-14-dev:arm64. 606s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 606s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 606s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 606s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 606s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 607s Selecting previously unselected package gcc-14. 607s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 607s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 607s Selecting previously unselected package gcc-aarch64-linux-gnu. 607s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 607s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 607s Selecting previously unselected package gcc. 607s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 607s Unpacking gcc (4:14.2.0-1ubuntu1) ... 607s Selecting previously unselected package libstdc++-14-dev:arm64. 607s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 607s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 607s Selecting previously unselected package g++-14-aarch64-linux-gnu. 607s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 607s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 607s Selecting previously unselected package g++-14. 607s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 607s Unpacking g++-14 (14.2.0-17ubuntu3) ... 607s Selecting previously unselected package g++-aarch64-linux-gnu. 607s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 607s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 607s Selecting previously unselected package g++. 607s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 607s Unpacking g++ (4:14.2.0-1ubuntu1) ... 607s Selecting previously unselected package build-essential. 607s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 607s Unpacking build-essential (12.10ubuntu1) ... 607s Selecting previously unselected package dctrl-tools. 607s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 607s Unpacking dctrl-tools (2.24-3build3) ... 607s Selecting previously unselected package fonts-dejavu-mono. 607s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 607s Unpacking fonts-dejavu-mono (2.37-8) ... 607s Selecting previously unselected package fonts-dejavu-core. 607s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 607s Unpacking fonts-dejavu-core (2.37-8) ... 607s Selecting previously unselected package fontconfig-config. 607s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 608s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 608s Selecting previously unselected package libfontconfig1:arm64. 608s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 608s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 608s Selecting previously unselected package fontconfig. 608s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 608s Unpacking fontconfig (2.15.0-2ubuntu1) ... 608s Selecting previously unselected package fonts-font-awesome. 608s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 608s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 608s Selecting previously unselected package fonts-glyphicons-halflings. 608s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 608s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 608s Selecting previously unselected package fonts-lmodern. 608s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 608s Unpacking fonts-lmodern (2.005-1) ... 608s Selecting previously unselected package fonts-mathjax. 608s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 608s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 608s Selecting previously unselected package libgfortran5:arm64. 608s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 608s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 608s Selecting previously unselected package libgfortran-14-dev:arm64. 608s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 608s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 608s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 608s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 608s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 608s Selecting previously unselected package gfortran-14. 609s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 609s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 609s Selecting previously unselected package gfortran-aarch64-linux-gnu. 609s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 609s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 609s Selecting previously unselected package gfortran. 609s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 609s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 609s Selecting previously unselected package icu-devtools. 609s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 609s Unpacking icu-devtools (76.1-1ubuntu2) ... 609s Selecting previously unselected package javascript-common. 609s Preparing to unpack .../042-javascript-common_12_all.deb ... 609s Unpacking javascript-common (12) ... 609s Selecting previously unselected package libio-string-perl. 609s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 609s Unpacking libio-string-perl (1.08-4) ... 609s Selecting previously unselected package liblatex-tounicode-perl. 609s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 609s Unpacking liblatex-tounicode-perl (0.55-1) ... 609s Selecting previously unselected package libbibtex-parser-perl. 609s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 609s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 609s Selecting previously unselected package libblas3:arm64. 609s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 609s Unpacking libblas3:arm64 (3.12.1-2) ... 609s Selecting previously unselected package libblas-dev:arm64. 609s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 609s Unpacking libblas-dev:arm64 (3.12.1-2) ... 609s Selecting previously unselected package libboost1.83-dev:arm64. 609s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 609s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 611s Selecting previously unselected package libboost-dev:arm64. 611s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 611s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 611s Selecting previously unselected package libbz2-dev:arm64. 611s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 611s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 611s Selecting previously unselected package libpixman-1-0:arm64. 611s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 611s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 611s Selecting previously unselected package libxcb-render0:arm64. 611s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 611s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 611s Selecting previously unselected package libxcb-shm0:arm64. 611s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 611s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 611s Selecting previously unselected package libxrender1:arm64. 611s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 611s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 611s Selecting previously unselected package libcairo2:arm64. 611s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 611s Unpacking libcairo2:arm64 (1.18.2-2) ... 611s Selecting previously unselected package libdatrie1:arm64. 611s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 611s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 611s Selecting previously unselected package libdeflate0:arm64. 611s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 611s Unpacking libdeflate0:arm64 (1.23-1) ... 611s Selecting previously unselected package libdeflate-dev:arm64. 611s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 611s Unpacking libdeflate-dev:arm64 (1.23-1) ... 611s Selecting previously unselected package libgraphite2-3:arm64. 611s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 611s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 611s Selecting previously unselected package libharfbuzz0b:arm64. 611s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 611s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 611s Selecting previously unselected package x11-common. 611s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 611s Unpacking x11-common (1:7.7+23ubuntu3) ... 611s Selecting previously unselected package libice6:arm64. 611s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 611s Unpacking libice6:arm64 (2:1.1.1-1) ... 612s Selecting previously unselected package libicu-dev:arm64. 612s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 612s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 612s Selecting previously unselected package libjpeg-turbo8:arm64. 612s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 612s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 612s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 612s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 612s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 612s Selecting previously unselected package libjpeg8:arm64. 612s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 612s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 612s Selecting previously unselected package libjpeg8-dev:arm64. 612s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 612s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 612s Selecting previously unselected package libjpeg-dev:arm64. 612s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 612s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 612s Selecting previously unselected package libjs-bootstrap. 612s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 612s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 612s Selecting previously unselected package libjs-popper.js. 612s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 612s Unpacking libjs-popper.js (1.16.1+ds-6) ... 612s Selecting previously unselected package libjs-bootstrap4. 612s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 612s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 612s Selecting previously unselected package libjs-d3. 612s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 612s Unpacking libjs-d3 (3.5.17-4) ... 612s Selecting previously unselected package libjs-es5-shim. 612s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 612s Unpacking libjs-es5-shim (4.6.7-2) ... 613s Selecting previously unselected package libjs-highlight.js. 613s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 613s 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(2024.20240313.70630+ds-5build2) ... 613s Selecting previously unselected package liblapack3:arm64. 613s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 613s Unpacking liblapack3:arm64 (3.12.1-2) ... 613s Selecting previously unselected package liblapack-dev:arm64. 613s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 613s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 613s Selecting previously unselected package liblerc4:arm64. 614s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 614s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 614s Selecting previously unselected package liblua5.4-0:arm64. 614s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 614s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 614s Selecting previously unselected package libmpfi0:arm64. 614s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 614s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 614s Selecting previously unselected package libncurses-dev:arm64. 614s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 614s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 614s Selecting previously unselected package libthai-data. 614s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 614s Unpacking libthai-data (0.1.29-2build1) ... 614s Selecting previously unselected package libthai0:arm64. 614s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 614s Unpacking libthai0:arm64 (0.1.29-2build1) ... 614s Selecting previously unselected package libpango-1.0-0:arm64. 614s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 614s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 614s Selecting previously unselected package libpangoft2-1.0-0:arm64. 614s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 614s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 614s Selecting previously unselected package libpangocairo-1.0-0:arm64. 614s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 614s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 614s Selecting previously unselected package libpaper2:arm64. 614s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 614s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 614s Selecting previously unselected package libpaper-utils. 614s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 614s Unpacking libpaper-utils (2.2.5-0.3) ... 614s Selecting previously unselected package libpcre2-16-0:arm64. 614s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 614s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 614s Selecting previously unselected package libpcre2-32-0:arm64. 614s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 614s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 614s Selecting previously unselected package libpcre2-posix3:arm64. 614s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 614s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 614s Selecting previously unselected package libpcre2-dev:arm64. 614s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 614s Unpacking libpcre2-dev:arm64 (10.45-1) ... 614s Selecting previously unselected package libpkgconf3:arm64. 614s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 614s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 614s Selecting previously unselected package zlib1g-dev:arm64. 614s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 614s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 614s Selecting previously unselected package libpng-dev:arm64. 614s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 614s Unpacking libpng-dev:arm64 (1.6.47-1) ... 614s Selecting previously unselected package libpotrace0:arm64. 615s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 615s Unpacking libpotrace0:arm64 (1.16-2build1) ... 615s Selecting previously unselected package libptexenc1:arm64. 615s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 615s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 615s Selecting previously unselected package libreadline-dev:arm64. 615s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 615s Unpacking libreadline-dev:arm64 (8.2-6) ... 615s Selecting previously unselected package libsharpyuv0:arm64. 615s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 615s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 615s Selecting previously unselected package libsm6:arm64. 615s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 615s Unpacking libsm6:arm64 (2:1.2.4-1) ... 615s Selecting previously unselected package libsynctex2:arm64. 615s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 615s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 615s Selecting previously unselected package libtcl8.6:arm64. 615s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 615s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 615s Selecting previously unselected package libteckit0:arm64. 615s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 615s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 615s Selecting previously unselected package libtexlua53-5:arm64. 615s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 615s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 615s Selecting previously unselected package libjbig0:arm64. 615s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 615s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 615s Selecting previously unselected package libwebp7:arm64. 615s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 615s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 615s Selecting previously unselected package libtiff6:arm64. 615s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 615s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 615s Selecting previously unselected package libxft2:arm64. 615s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 615s Unpacking libxft2:arm64 (2.3.6-1build1) ... 615s Selecting previously unselected package libxss1:arm64. 615s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 615s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 615s Selecting previously unselected package libtk8.6:arm64. 615s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 615s Unpacking libtk8.6:arm64 (8.6.16-1) ... 615s Selecting previously unselected package libxt6t64:arm64. 615s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 615s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 615s Selecting previously unselected package libxmu6:arm64. 615s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 615s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 616s Selecting previously unselected package libxpm4:arm64. 616s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 616s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 616s Selecting previously unselected package libxaw7:arm64. 616s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 616s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 616s Selecting previously unselected package libxi6:arm64. 616s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 616s Unpacking libxi6:arm64 (2:1.8.2-1) ... 616s Selecting previously unselected package libzzip-0-13t64:arm64. 616s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 616s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 616s Selecting previously unselected package zip. 616s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 616s Unpacking zip (3.0-14ubuntu2) ... 616s Selecting previously unselected package unzip. 616s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 616s Unpacking unzip (6.0-28ubuntu6) ... 616s Selecting previously unselected package xdg-utils. 616s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 616s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 616s Selecting previously unselected package r-base-core. 616s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 616s Unpacking r-base-core (4.4.3-1) ... 616s Selecting previously unselected package r-cran-littler. 616s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 616s Unpacking r-cran-littler (0.3.20-2) ... 616s Selecting previously unselected package littler. 616s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 616s Unpacking littler (0.3.20-2) ... 616s Selecting previously unselected package node-bootstrap-sass. 616s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 616s Unpacking node-bootstrap-sass (3.4.3-2) ... 616s Selecting previously unselected package node-html5shiv. 617s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 617s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 617s Selecting previously unselected package node-normalize.css. 617s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 617s Unpacking node-normalize.css (8.0.1-5) ... 617s Selecting previously unselected package pandoc-data. 617s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 617s Unpacking pandoc-data (3.1.11.1-3build1) ... 617s Selecting previously unselected package pandoc. 617s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 617s Unpacking pandoc (3.1.11.1+ds-2) ... 618s Selecting previously unselected package liblzma-dev:arm64. 618s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 618s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 618s Selecting previously unselected package pkgconf-bin. 618s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 618s Unpacking pkgconf-bin (1.8.1-4) ... 618s Selecting previously unselected package pkgconf:arm64. 618s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 618s Unpacking pkgconf:arm64 (1.8.1-4) ... 618s Selecting previously unselected package libtirpc-dev:arm64. 618s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 618s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 618s Selecting previously unselected package r-base-dev. 618s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 618s Unpacking r-base-dev (4.4.3-1) ... 618s Selecting previously unselected package pkg-r-autopkgtest. 618s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 618s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 618s Selecting previously unselected package r-bioc-biocgenerics. 618s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 618s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 618s Selecting previously unselected package r-bioc-biobase. 618s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_arm64.deb ... 618s Unpacking r-bioc-biobase (2.66.0-2) ... 618s Selecting previously unselected package r-bioc-s4vectors. 618s Preparing to unpack .../145-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 618s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 618s Selecting previously unselected package r-bioc-iranges. 618s Preparing to unpack .../146-r-bioc-iranges_2.40.1-2_arm64.deb ... 618s Unpacking r-bioc-iranges (2.40.1-2) ... 618s Selecting previously unselected package r-cran-dbi. 618s Preparing to unpack .../147-r-cran-dbi_1.2.3-1_all.deb ... 618s Unpacking r-cran-dbi (1.2.3-1) ... 618s Selecting previously unselected package r-cran-bit. 618s Preparing to unpack .../148-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 618s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 619s Selecting previously unselected package r-cran-bit64. 619s Preparing to unpack .../149-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 619s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 619s Selecting previously unselected package r-cran-rlang. 619s Preparing to unpack .../150-r-cran-rlang_1.1.5-1_arm64.deb ... 619s Unpacking r-cran-rlang (1.1.5-1) ... 619s Selecting previously unselected package r-cran-cli. 619s Preparing to unpack .../151-r-cran-cli_3.6.4-1_arm64.deb ... 619s Unpacking r-cran-cli (3.6.4-1) ... 619s Selecting previously unselected package r-cran-glue. 619s Preparing to unpack .../152-r-cran-glue_1.8.0-1_arm64.deb ... 619s Unpacking r-cran-glue (1.8.0-1) ... 619s Selecting previously unselected package r-cran-lifecycle. 619s Preparing to unpack .../153-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 619s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 619s Selecting previously unselected package r-cran-vctrs. 619s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 619s Unpacking r-cran-vctrs (0.6.5-1) ... 619s Selecting previously unselected package r-cran-blob. 619s Preparing to unpack .../155-r-cran-blob_1.2.4-1_all.deb ... 619s Unpacking r-cran-blob (1.2.4-1) ... 619s Selecting previously unselected package r-cran-fastmap. 619s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_arm64.deb ... 619s Unpacking r-cran-fastmap (1.2.0-1) ... 619s Selecting previously unselected package r-cran-cachem. 619s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_arm64.deb ... 619s Unpacking r-cran-cachem (1.1.0-1) ... 619s Selecting previously unselected package r-cran-memoise. 619s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 619s Unpacking r-cran-memoise (2.0.1-1) ... 619s Selecting previously unselected package r-cran-pkgconfig. 619s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 619s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 619s Selecting previously unselected package r-cran-plogr. 619s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ... 619s Unpacking r-cran-plogr (0.2.0-3build1) ... 619s Selecting previously unselected package r-cran-cpp11. 619s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ... 619s Unpacking r-cran-cpp11 (0.5.2-1) ... 619s Selecting previously unselected package r-cran-rsqlite. 619s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_arm64.deb ... 619s Unpacking r-cran-rsqlite (2.3.9-1) ... 619s Selecting previously unselected package r-cran-curl. 619s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 619s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 619s Selecting previously unselected package r-cran-jsonlite. 620s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 620s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 620s Selecting previously unselected package r-cran-mime. 620s Preparing to unpack .../165-r-cran-mime_0.12-2_arm64.deb ... 620s Unpacking r-cran-mime (0.12-2) ... 620s Selecting previously unselected package r-cran-sys. 620s Preparing to unpack .../166-r-cran-sys_3.4.3-1_arm64.deb ... 620s Unpacking r-cran-sys (3.4.3-1) ... 620s Selecting previously unselected package r-cran-askpass. 620s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_arm64.deb ... 620s Unpacking r-cran-askpass (1.2.1-1) ... 620s Selecting previously unselected package r-cran-openssl. 620s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 620s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 620s Selecting previously unselected package r-cran-r6. 620s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 620s Unpacking r-cran-r6 (2.6.1-1) ... 620s Selecting previously unselected package r-cran-httr. 620s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ... 620s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 620s Selecting previously unselected package r-cran-png. 620s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_arm64.deb ... 620s Unpacking r-cran-png (0.1-8-1build2) ... 620s Selecting previously unselected package r-bioc-zlibbioc. 620s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 620s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 620s Selecting previously unselected package r-bioc-xvector. 620s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ... 620s Unpacking r-bioc-xvector (0.46.0-2) ... 620s Selecting previously unselected package r-bioc-ucsc.utils. 620s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 620s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 620s Selecting previously unselected package r-bioc-genomeinfodbdata. 620s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 620s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 620s Selecting previously unselected package r-bioc-genomeinfodb. 620s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 620s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 620s Selecting previously unselected package r-cran-crayon. 620s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ... 620s Unpacking r-cran-crayon (1.5.3-1) ... 620s Selecting previously unselected package r-bioc-biostrings. 620s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 620s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 621s Selecting previously unselected package r-bioc-keggrest. 621s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 621s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 621s Selecting previously unselected package r-bioc-annotationdbi. 621s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ... 621s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 621s Selecting previously unselected package r-bioc-biocio. 621s Preparing to unpack .../181-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 621s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 621s Selecting previously unselected package r-cran-formatr. 621s Preparing to unpack .../182-r-cran-formatr_1.14-2_all.deb ... 621s Unpacking r-cran-formatr (1.14-2) ... 621s Selecting previously unselected package r-cran-lambda.r. 621s Preparing to unpack .../183-r-cran-lambda.r_1.2.4-2build1_all.deb ... 621s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 621s Selecting previously unselected package r-cran-futile.options. 621s Preparing to unpack .../184-r-cran-futile.options_1.0.1-3build1_all.deb ... 621s Unpacking r-cran-futile.options (1.0.1-3build1) ... 621s Selecting previously unselected package r-cran-futile.logger. 621s Preparing to unpack .../185-r-cran-futile.logger_1.4.3-4build1_all.deb ... 621s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 621s Selecting previously unselected package r-cran-snow. 621s Preparing to unpack .../186-r-cran-snow_1%3a0.4.4-2_all.deb ... 621s Unpacking r-cran-snow (1:0.4.4-2) ... 621s Selecting previously unselected package r-cran-codetools. 621s Preparing to unpack .../187-r-cran-codetools_0.2-20-1_all.deb ... 621s Unpacking r-cran-codetools (0.2-20-1) ... 621s Selecting previously unselected package r-cran-bh. 621s Preparing to unpack .../188-r-cran-bh_1.84.0-1_all.deb ... 621s Unpacking r-cran-bh (1.84.0-1) ... 621s Selecting previously unselected package r-bioc-biocparallel. 621s Preparing to unpack .../189-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 621s Unpacking r-bioc-biocparallel (1.40.0-2) ... 621s Selecting previously unselected package r-cran-base64enc. 621s Preparing to unpack .../190-r-cran-base64enc_0.1-3-3_arm64.deb ... 621s Unpacking r-cran-base64enc (0.1-3-3) ... 621s Selecting previously unselected package r-cran-digest. 621s Preparing to unpack .../191-r-cran-digest_0.6.37-1_arm64.deb ... 621s Unpacking r-cran-digest (0.6.37-1) ... 621s Selecting previously unselected package r-cran-htmltools. 621s Preparing to unpack .../192-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 621s Unpacking r-cran-htmltools (0.5.8.1-1) ... 621s Selecting previously unselected package r-cran-evaluate. 621s Preparing to unpack .../193-r-cran-evaluate_1.0.3-1_all.deb ... 621s Unpacking r-cran-evaluate (1.0.3-1) ... 622s Selecting previously unselected package r-cran-xfun. 622s Preparing to unpack .../194-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 622s Unpacking r-cran-xfun (0.51+dfsg-1) ... 622s Selecting previously unselected package r-cran-highr. 622s Preparing to unpack .../195-r-cran-highr_0.11+dfsg-1_all.deb ... 622s Unpacking r-cran-highr (0.11+dfsg-1) ... 622s Selecting previously unselected package r-cran-yaml. 622s Preparing to unpack .../196-r-cran-yaml_2.3.10-1_arm64.deb ... 622s Unpacking r-cran-yaml (2.3.10-1) ... 622s Selecting previously unselected package libjs-mathjax. 622s Preparing to unpack .../197-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 622s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 622s Selecting previously unselected package r-cran-knitr. 622s Preparing to unpack .../198-r-cran-knitr_1.49+dfsg-1_all.deb ... 622s Unpacking r-cran-knitr (1.49+dfsg-1) ... 623s Selecting previously unselected package r-cran-jquerylib. 623s Preparing to unpack .../199-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 623s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 623s Selecting previously unselected package r-cran-fs. 623s Preparing to unpack .../200-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 623s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 623s Selecting previously unselected package r-cran-rappdirs. 623s Preparing to unpack .../201-r-cran-rappdirs_0.3.3-1_arm64.deb ... 623s Unpacking r-cran-rappdirs (0.3.3-1) ... 623s Selecting previously unselected package r-cran-sass. 623s Preparing to unpack .../202-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 623s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 623s Selecting previously unselected package r-cran-bslib. 623s Preparing to unpack .../203-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 623s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 623s Selecting previously unselected package r-cran-fontawesome. 623s Preparing to unpack .../204-r-cran-fontawesome_0.5.3-1_all.deb ... 623s Unpacking r-cran-fontawesome (0.5.3-1) ... 623s Selecting previously unselected package r-cran-tinytex. 623s Preparing to unpack .../205-r-cran-tinytex_0.56-1_all.deb ... 623s Unpacking r-cran-tinytex (0.56-1) ... 623s Selecting previously unselected package libjs-modernizr. 623s Preparing to unpack .../206-libjs-modernizr_3.13.0-0.1_all.deb ... 623s Unpacking libjs-modernizr (3.13.0-0.1) ... 623s Selecting previously unselected package r-cran-pkgkitten. 623s Preparing to unpack .../207-r-cran-pkgkitten_0.2.4-1_all.deb ... 623s Unpacking r-cran-pkgkitten (0.2.4-1) ... 623s Selecting previously unselected package r-cran-rcpp. 623s Preparing to unpack .../208-r-cran-rcpp_1.0.14-1_arm64.deb ... 623s Unpacking r-cran-rcpp (1.0.14-1) ... 623s Selecting previously unselected package r-cran-later. 623s Preparing to unpack .../209-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 623s Unpacking r-cran-later (1.4.1+dfsg-1) ... 623s Selecting previously unselected package r-cran-magrittr. 624s Preparing to unpack .../210-r-cran-magrittr_2.0.3-1_arm64.deb ... 624s Unpacking r-cran-magrittr (2.0.3-1) ... 624s Selecting previously unselected package r-cran-promises. 624s Preparing to unpack .../211-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 624s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 624s Selecting previously unselected package r-cran-httpuv. 624s Preparing to unpack .../212-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 624s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 624s Selecting previously unselected package r-cran-xtable. 624s Preparing to unpack .../213-r-cran-xtable_1%3a1.8-4-2_all.deb ... 624s Unpacking r-cran-xtable (1:1.8-4-2) ... 624s Selecting previously unselected package r-cran-sourcetools. 624s Preparing to unpack .../214-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 624s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 624s Selecting previously unselected package r-cran-withr. 624s Preparing to unpack .../215-r-cran-withr_3.0.2+dfsg-1_all.deb ... 624s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 624s Selecting previously unselected package r-cran-commonmark. 624s Preparing to unpack .../216-r-cran-commonmark_1.9.2-2_arm64.deb ... 624s Unpacking r-cran-commonmark (1.9.2-2) ... 624s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 624s Preparing to unpack .../217-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 624s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 624s Selecting previously unselected package r-cran-shiny. 624s Preparing to unpack .../218-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 624s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 624s Selecting previously unselected package r-cran-rmarkdown. 624s Preparing to unpack .../219-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 624s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 624s Selecting previously unselected package r-cran-bookdown. 624s Preparing to unpack .../220-r-cran-bookdown_0.42+dfsg-1_all.deb ... 624s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 624s Selecting previously unselected package r-cran-biocmanager. 624s Preparing to unpack .../221-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 624s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 624s Selecting previously unselected package tex-common. 625s Preparing to unpack .../222-tex-common_6.19_all.deb ... 625s Unpacking tex-common (6.19) ... 625s Selecting previously unselected package t1utils. 625s Preparing to unpack .../223-t1utils_1.41-4build3_arm64.deb ... 625s Unpacking t1utils (1.41-4build3) ... 625s Selecting previously unselected package texlive-binaries. 625s Preparing to unpack .../224-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 625s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 625s Selecting previously unselected package texlive-base. 625s Preparing to unpack .../225-texlive-base_2024.20250114-1_all.deb ... 625s Unpacking texlive-base (2024.20250114-1) ... 626s Selecting previously unselected package texlive-latex-base. 626s Preparing to unpack .../226-texlive-latex-base_2024.20250114-1_all.deb ... 626s Unpacking texlive-latex-base (2024.20250114-1) ... 626s Selecting previously unselected package texlive-bibtex-extra. 626s Preparing to unpack .../227-texlive-bibtex-extra_2024.20250114-1_all.deb ... 626s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 629s Selecting previously unselected package r-bioc-biocversion. 629s Preparing to unpack .../228-r-bioc-biocversion_3.20.0-2_all.deb ... 629s Unpacking r-bioc-biocversion (3.20.0-2) ... 629s Selecting previously unselected package r-bioc-biocstyle. 629s Preparing to unpack .../229-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 629s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 629s Selecting previously unselected package r-cran-lattice. 629s Preparing to unpack .../230-r-cran-lattice_0.22-6-1_arm64.deb ... 629s Unpacking r-cran-lattice (0.22-6-1) ... 629s Selecting previously unselected package r-cran-matrix. 629s Preparing to unpack .../231-r-cran-matrix_1.7-3-1_arm64.deb ... 629s Unpacking r-cran-matrix (1.7-3-1) ... 629s Selecting previously unselected package r-cran-matrixstats. 629s Preparing to unpack .../232-r-cran-matrixstats_1.5.0-1_arm64.deb ... 629s Unpacking r-cran-matrixstats (1.5.0-1) ... 630s Selecting previously unselected package r-bioc-matrixgenerics. 630s Preparing to unpack .../233-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 630s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 630s Selecting previously unselected package r-cran-abind. 630s Preparing to unpack .../234-r-cran-abind_1.4-8-1_all.deb ... 630s Unpacking r-cran-abind (1.4-8-1) ... 630s Selecting previously unselected package r-bioc-s4arrays. 630s Preparing to unpack .../235-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 630s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 630s Selecting previously unselected package r-bioc-sparsearray. 630s Preparing to unpack .../236-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 630s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 630s Selecting previously unselected package r-bioc-delayedarray. 630s Preparing to unpack .../237-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 630s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 630s Selecting previously unselected package r-bioc-genomicranges. 630s Preparing to unpack .../238-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 630s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 630s Selecting previously unselected package r-bioc-summarizedexperiment. 630s Preparing to unpack .../239-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 630s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 630s Selecting previously unselected package r-cran-bitops. 630s Preparing to unpack .../240-r-cran-bitops_1.0-9-1_arm64.deb ... 630s Unpacking r-cran-bitops (1.0-9-1) ... 630s Selecting previously unselected package r-bioc-rhtslib. 630s Preparing to unpack .../241-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 630s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 630s Selecting previously unselected package r-bioc-rsamtools. 630s Preparing to unpack .../242-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 630s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 630s Selecting previously unselected package r-bioc-genomicalignments. 630s Preparing to unpack .../243-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 630s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 630s Selecting previously unselected package r-cran-xml. 630s Preparing to unpack .../244-r-cran-xml_3.99-0.18-1_arm64.deb ... 630s Unpacking r-cran-xml (3.99-0.18-1) ... 631s Selecting previously unselected package r-cran-rcurl. 631s Preparing to unpack .../245-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 631s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 631s Selecting previously unselected package r-cran-rjson. 631s Preparing to unpack .../246-r-cran-rjson_0.2.23-1_arm64.deb ... 631s Unpacking r-cran-rjson (0.2.23-1) ... 631s Selecting previously unselected package r-cran-restfulr. 631s Preparing to unpack .../247-r-cran-restfulr_0.0.15-1_arm64.deb ... 631s Unpacking r-cran-restfulr (0.0.15-1) ... 631s Selecting previously unselected package r-bioc-rtracklayer. 631s Preparing to unpack .../248-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 631s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 631s Selecting previously unselected package r-bioc-genomicfeatures. 631s Preparing to unpack .../249-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 631s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 631s Selecting previously unselected package r-bioc-pwalign. 631s Preparing to unpack .../250-r-bioc-pwalign_1.2.0-2_arm64.deb ... 631s Unpacking r-bioc-pwalign (1.2.0-2) ... 631s Selecting previously unselected package r-cran-hwriter. 631s Preparing to unpack .../251-r-cran-hwriter_1.3.2.1-1_all.deb ... 631s Unpacking r-cran-hwriter (1.3.2.1-1) ... 631s Selecting previously unselected package r-cran-jpeg. 631s Preparing to unpack .../252-r-cran-jpeg_0.1-10-1_arm64.deb ... 631s Unpacking r-cran-jpeg (0.1-10-1) ... 631s Selecting previously unselected package 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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 635s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 636s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 636s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 636s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 636s Setting up r-cran-commonmark (1.9.2-2) ... 636s Setting up g++-14 (14.2.0-17ubuntu3) ... 636s Setting up r-cran-rjson (0.2.23-1) ... 636s Setting up r-cran-r6 (2.6.1-1) ... 636s Setting up r-cran-pkgkitten (0.2.4-1) ... 636s Setting up r-cran-jpeg (0.1-10-1) ... 636s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 636s Setting up texlive-base (2024.20250114-1) ... 636s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 636s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 637s tl-paper: setting paper size 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637s Setting up r-cran-mime (0.12-2) ... 637s Setting up r-cran-base64enc (0.1-3-3) ... 637s Setting up r-cran-abind (1.4-8-1) ... 637s Setting up r-cran-digest (0.6.37-1) ... 637s Setting up r-cran-yaml (2.3.10-1) ... 637s Setting up r-cran-lambda.r (1.2.4-2build1) ... 637s Setting up r-cran-evaluate (1.0.3-1) ... 637s Setting up r-cran-dbi (1.2.3-1) ... 637s Setting up r-cran-highr (0.11+dfsg-1) ... 637s Setting up r-cran-mass (7.3-64-1) ... 637s Setting up r-cran-snow (1:0.4.4-2) ... 637s Setting up r-cran-glue (1.8.0-1) ... 637s Setting up r-cran-bit (4.6.0+dfsg-1) ... 637s Setting up r-cran-xtable (1:1.8-4-2) ... 637s Setting up r-cran-cli (3.6.4-1) ... 637s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 637s Setting up r-cran-bitops (1.0-9-1) ... 637s Setting up r-bioc-biocversion (3.20.0-2) ... 637s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 637s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 637s Setting up gcc (4:14.2.0-1ubuntu1) ... 637s Setting up r-bioc-zlibbioc 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update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 637s Setting up r-cran-cachem (1.1.0-1) ... 637s Setting up r-cran-sass (0.4.9+dfsg-1) ... 637s Setting up build-essential (12.10ubuntu1) ... 637s Setting up r-bioc-iranges (2.40.1-2) ... 637s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 637s Setting up r-cran-restfulr (0.0.15-1) ... 637s Setting up r-cran-vctrs (0.6.5-1) ... 637s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 637s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 638s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 638s Setting up r-bioc-biocparallel (1.40.0-2) ... 638s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 638s Setting up r-cran-fontawesome (0.5.3-1) ... 638s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 638s Setting up gfortran (4:14.2.0-1ubuntu1) ... 638s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 638s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 638s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 638s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 638s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 638s Setting up texlive-bibtex-extra (2024.20250114-1) ... 638s Setting up r-cran-interp (1.1-6-1) ... 638s Setting up r-cran-httr (1.4.7+dfsg-1) ... 638s Setting up r-cran-memoise (2.0.1-1) ... 638s Setting up r-cran-promises (1.3.2+dfsg-1) ... 638s Setting up r-cran-blob (1.2.4-1) ... 638s Setting up r-bioc-xvector (0.46.0-2) ... 638s Setting up r-cran-rsqlite (2.3.9-1) ... 638s Setting up r-base-dev (4.4.3-1) ... 638s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 638s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 638s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 638s Setting up r-cran-latticeextra (0.6-30-1) ... 638s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 638s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 638s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 638s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 638s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 638s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 638s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 638s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 638s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 638s Setting up r-cran-bookdown (0.42+dfsg-1) ... 638s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 638s Setting up r-bioc-pwalign (1.2.0-2) ... 638s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 638s Setting up r-bioc-annotationdbi (1.68.0-2) ... 638s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 638s Setting up r-bioc-genomicalignments (1.42.0-2) ... 638s Setting up r-bioc-rtracklayer (1.66.0-2) ... 638s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 638s Setting up r-bioc-shortread (1.64.0-3) ... 638s Processing triggers for libc-bin (2.41-1ubuntu2) ... 638s Processing triggers for man-db (2.13.0-1) ... 639s Processing triggers for install-info (7.1.1-1) ... 639s Processing triggers for tex-common (6.19) ... 640s Running updmap-sys. This may take some time... done. 640s Running mktexlsr /var/lib/texmf ... done. 640s Building format(s) --all. 678s This may take some time... done. 680s autopkgtest [14:35:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 680s autopkgtest [14:35:31]: test pkg-r-autopkgtest: [----------------------- 680s Test: Try to load the R library Rsamtools 681s 681s R version 4.4.3 (2025-02-28) -- "Trophy Case" 681s Copyright (C) 2025 The R Foundation for Statistical Computing 681s Platform: aarch64-unknown-linux-gnu 681s 681s R is free software and comes with ABSOLUTELY NO WARRANTY. 681s You are welcome to redistribute it under certain conditions. 681s Type 'license()' or 'licence()' for distribution details. 681s 681s R is a collaborative project with many contributors. 681s Type 'contributors()' for more information and 681s 'citation()' on how to cite R or R packages in publications. 681s 681s Type 'demo()' for some demos, 'help()' for on-line help, or 681s 'help.start()' for an HTML browser interface to help. 681s Type 'q()' to quit R. 681s 681s > library('Rsamtools') 681s Loading required package: GenomeInfoDb 681s Loading required package: BiocGenerics 681s 681s Attaching package: ‘BiocGenerics’ 681s 681s The following objects are masked from ‘package:stats’: 681s 681s IQR, mad, sd, var, xtabs 681s 681s The following objects are masked from ‘package:base’: 681s 681s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 681s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 681s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 681s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 681s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 681s table, tapply, union, unique, unsplit, which.max, which.min 681s 681s Loading required package: S4Vectors 681s Loading required package: stats4 682s 682s Attaching package: ‘S4Vectors’ 682s 682s The following object is masked from ‘package:utils’: 682s 682s findMatches 682s 682s The following objects are masked from ‘package:base’: 682s 682s expand.grid, I, unname 682s 682s Loading required package: IRanges 682s Loading required package: GenomicRanges 683s Loading required package: Biostrings 683s Loading required package: XVector 683s 683s Attaching package: ‘Biostrings’ 683s 683s The following object is masked from ‘package:base’: 683s 683s strsplit 683s 684s > 684s > 684s Other tests are currently unsupported! 684s They will be progressively added. 684s autopkgtest [14:35:35]: test pkg-r-autopkgtest: -----------------------] 685s autopkgtest [14:35:36]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 685s pkg-r-autopkgtest PASS 685s autopkgtest [14:35:36]: @@@@@@@@@@@@@@@@@@@@ summary 685s pkg-r-autopkgtest PASS 705s nova [W] Using flock in prodstack6-arm64 705s Creating nova instance adt-plucky-arm64-r-bioc-rsamtools-20250315-140420-juju-7f2275-prod-proposed-migration-environment-20-3e0fcc12-f6a9-4fc5-8a29-a53877d96bd6 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 705s nova [W] Timed out waiting for db3bc70a-b10a-4666-a168-73588ae7850c to get deleted.