0s autopkgtest [15:09:54]: starting date and time: 2025-03-15 15:09:54+0000
  0s autopkgtest [15:09:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:09:54]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fkzlrdgd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rots --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-20.secgroup --name adt-plucky-arm64-r-bioc-rots-20250315-150954-juju-7f2275-prod-proposed-migration-environment-15-1d283153-5df7-48bc-8518-97cce556bfb9 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
150s autopkgtest [15:12:24]: testbed dpkg architecture: arm64
150s autopkgtest [15:12:24]: testbed apt version: 2.9.33
151s autopkgtest [15:12:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
151s autopkgtest [15:12:25]: testbed release detected to be: None
152s autopkgtest [15:12:26]: updating testbed package index (apt update)
152s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
153s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
153s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
153s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
153s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
153s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
153s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
153s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
153s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
153s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
153s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
154s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
154s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
154s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
154s Fetched 1094 kB in 2s (678 kB/s)
155s Reading package lists...
156s + lsb_release --codename --short
156s + RELEASE=plucky
156s + cat
156s + [ plucky != trusty ]
156s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
156s Reading package lists...
157s Building dependency tree...
157s Reading state information...
158s Calculating upgrade...
158s Calculating upgrade...
159s The following packages will be upgraded:
159s   python3-jinja2 strace
159s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
159s Need to get 608 kB of archives.
159s After this operation, 11.3 kB of additional disk space will be used.
159s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
159s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
160s Fetched 608 kB in 1s (689 kB/s)
161s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
161s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
161s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
161s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
161s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
161s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
161s Setting up strace (6.13+ds-1ubuntu1) ...
161s Processing triggers for man-db (2.13.0-1) ...
162s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
162s + /usr/lib/apt/apt-helper analyze-pattern ?true
162s + uname -r
162s + sed s/\./\\./g
162s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
162s + + tail -n+2
163s apt list ?obsolete
163s + cut -d/ -f1
163s + grep -v ^linux-.*6\.14\.0-10-generic.*
163s + obsolete_pkgs=linux-headers-6.11.0-8-generic
163s linux-headers-6.11.0-8
163s linux-image-6.11.0-8-generic
163s linux-modules-6.11.0-8-generic
163s linux-tools-6.11.0-8-generic
163s linux-tools-6.11.0-8
163s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
163s Reading package lists...
164s Building dependency tree...
164s Reading state information...
165s Solving dependencies...
165s The following packages will be REMOVED:
165s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
165s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
165s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
165s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
166s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
166s After this operation, 267 MB disk space will be freed.
166s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
166s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
166s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
166s Removing libpython3.12t64:arm64 (3.12.9-1) ...
166s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
166s Removing libnsl2:arm64 (1.3.0-3build3) ...
166s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
166s Removing libunwind8:arm64 (1.6.2-3.1) ...
166s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
167s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
169s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
169s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
169s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
169s /etc/kernel/postrm.d/initramfs-tools:
169s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
169s /etc/kernel/postrm.d/zz-flash-kernel:
169s flash-kernel: Kernel 6.11.0-8-generic has been removed.
169s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
170s /etc/kernel/postrm.d/zz-update-grub:
170s Sourcing file `/etc/default/grub'
170s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
170s Generating grub configuration file ...
170s Found linux image: /boot/vmlinuz-6.14.0-10-generic
170s Found initrd image: /boot/initrd.img-6.14.0-10-generic
171s Warning: os-prober will not be executed to detect other bootable partitions.
171s Systems on them will not be added to the GRUB boot configuration.
171s Check GRUB_DISABLE_OS_PROBER documentation entry.
171s Adding boot menu entry for UEFI Firmware Settings ...
171s done
171s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
171s Processing triggers for libc-bin (2.41-1ubuntu1) ...
171s (Reading database ... 
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(Reading database ... 81650 files and directories currently installed.)
171s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
171s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
171s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
172s + grep -q trusty /etc/lsb-release
172s + [ ! -d /usr/share/doc/unattended-upgrades ]
172s + [ ! -d /usr/share/doc/lxd ]
172s + [ ! -d /usr/share/doc/lxd-client ]
172s + [ ! -d /usr/share/doc/snapd ]
172s + type iptables
172s + cat
172s + chmod 755 /etc/rc.local
172s + . /etc/rc.local
172s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
172s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
172s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
172s + uname -m
172s + [ aarch64 = ppc64le ]
172s + [ -d /run/systemd/system ]
172s + systemd-detect-virt --quiet --vm
172s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
172s + cat
172s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
172s + echo COMPRESS=lz4
172s autopkgtest [15:12:46]: upgrading testbed (apt dist-upgrade and autopurge)
172s Reading package lists...
173s Building dependency tree...
173s Reading state information...
174s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
174s Starting 2 pkgProblemResolver with broken count: 0
174s Done
176s Entering ResolveByKeep
177s 
178s Calculating upgrade...
179s The following packages will be upgraded:
179s   libc-bin libc-dev-bin libc6 libc6-dev locales
179s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
179s Need to get 9530 kB of archives.
179s After this operation, 0 B of additional disk space will be used.
179s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
181s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
181s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
183s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
184s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
188s Preconfiguring packages ...
188s Fetched 9530 kB in 9s (1105 kB/s)
188s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
188s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
188s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
188s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
188s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
188s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
189s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
189s Setting up libc6:arm64 (2.41-1ubuntu2) ...
189s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
189s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
189s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
189s Setting up libc-bin (2.41-1ubuntu2) ...
190s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 81647 files and directories currently installed.)
190s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
190s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
190s Setting up locales (2.41-1ubuntu2) ...
191s Generating locales (this might take a while)...
194s   en_US.UTF-8... done
194s Generation complete.
194s Setting up libc-dev-bin (2.41-1ubuntu2) ...
194s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
194s Processing triggers for man-db (2.13.0-1) ...
195s Processing triggers for systemd (257.3-1ubuntu3) ...
196s Reading package lists...
197s Building dependency tree...
197s Reading state information...
198s Starting pkgProblemResolver with broken count: 0
198s Starting 2 pkgProblemResolver with broken count: 0
198s Done
199s Solving dependencies...
200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
200s autopkgtest [15:13:14]: rebooting testbed after setup commands that affected boot
223s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
231s autopkgtest [15:13:45]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
234s autopkgtest [15:13:48]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rots
237s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rots 1.34.0-2 (dsc) [2076 B]
237s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rots 1.34.0-2 (tar) [467 kB]
237s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rots 1.34.0-2 (diff) [2692 B]
237s gpgv: Signature made Sun Jan 12 03:00:50 2025 UTC
237s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
237s gpgv:                issuer "crusoe@debian.org"
237s gpgv: Can't check signature: No public key
237s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rots_1.34.0-2.dsc: no acceptable signature found
237s autopkgtest [15:13:51]: testing package r-bioc-rots version 1.34.0-2
239s autopkgtest [15:13:53]: build not needed
829s autopkgtest [15:23:43]: test pkg-r-autopkgtest: preparing testbed
830s Reading package lists...
831s Building dependency tree...
831s Reading state information...
831s Starting pkgProblemResolver with broken count: 0
831s Starting 2 pkgProblemResolver with broken count: 0
831s Done
832s The following NEW packages will be installed:
832s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
832s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
832s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
832s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
832s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
832s   libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1
832s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
832s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
832s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
832s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
832s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
832s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
832s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
832s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
832s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1
832s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
832s   littler pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
832s   r-bioc-biobase r-bioc-biocgenerics r-bioc-rots r-cran-brio r-cran-callr
832s   r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
832s   r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite r-cran-lifecycle
832s   r-cran-littler r-cran-magrittr r-cran-pkgbuild r-cran-pkgkitten
832s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
832s   r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr
832s   unzip x11-common xdg-utils zip zlib1g-dev
833s 0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded.
833s Need to get 147 MB of archives.
833s After this operation, 447 MB of additional disk space will be used.
833s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
833s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
833s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
841s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
841s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
841s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
841s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
841s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
841s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
841s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
843s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
844s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
845s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
846s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
848s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
850s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
865s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
866s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
866s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
866s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
868s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
879s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
879s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
879s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
879s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
879s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
879s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
880s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
881s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
881s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
881s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
881s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
881s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
882s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
893s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
893s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
893s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
893s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
893s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
893s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
893s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
893s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
894s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
894s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
894s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
894s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
895s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
895s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
895s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
895s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
895s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
897s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
897s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
897s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
908s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
909s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
909s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
909s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
909s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
909s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
912s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
917s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
917s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
917s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
918s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
918s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
918s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
918s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
918s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
918s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
919s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
919s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
919s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
919s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
920s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
920s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
921s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
921s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
922s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
922s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
922s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
923s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
923s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
923s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
923s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
924s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
924s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
925s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
925s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
926s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
926s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
926s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
952s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB]
952s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B]
952s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
953s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
953s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
953s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
953s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
953s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
953s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
954s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
956s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
956s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB]
958s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rots arm64 1.34.0-2 [533 kB]
959s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB]
959s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ps arm64 1.9.0-1 [407 kB]
960s Get:108 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB]
960s Get:109 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.6-1 [363 kB]
960s Get:110 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB]
961s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB]
962s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB]
963s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
963s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
964s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB]
964s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB]
965s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB]
965s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB]
965s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB]
966s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB]
968s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
968s Get:122 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
968s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.6-1 [213 kB]
969s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-2 [125 kB]
969s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
969s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB]
970s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
970s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.6.1-2 [150 kB]
970s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.3-1 [1644 kB]
972s Preconfiguring packages ...
972s Fetched 147 MB in 2min 19s (1054 kB/s)
972s Selecting previously unselected package libisl23:arm64.
973s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
973s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
973s Unpacking libisl23:arm64 (0.27-1) ...
973s Selecting previously unselected package libmpc3:arm64.
973s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
973s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
973s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
973s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
973s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
973s Selecting previously unselected package cpp-14.
973s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
973s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
973s Selecting previously unselected package cpp-aarch64-linux-gnu.
973s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
973s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
973s Selecting previously unselected package cpp.
973s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
973s Unpacking cpp (4:14.2.0-1ubuntu1) ...
973s Selecting previously unselected package libcc1-0:arm64.
973s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
973s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
973s Selecting previously unselected package libgomp1:arm64.
973s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ...
973s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ...
973s Selecting previously unselected package libitm1:arm64.
973s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ...
973s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
973s Selecting previously unselected package libasan8:arm64.
973s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ...
973s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
973s Selecting previously unselected package liblsan0:arm64.
973s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
973s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
974s Selecting previously unselected package libtsan2:arm64.
974s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
974s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
974s Selecting previously unselected package libubsan1:arm64.
974s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
974s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
974s Selecting previously unselected package libhwasan0:arm64.
974s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
974s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
974s Selecting previously unselected package libgcc-14-dev:arm64.
974s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
974s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
974s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
974s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
974s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
975s Selecting previously unselected package gcc-14.
975s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
975s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
975s Selecting previously unselected package gcc-aarch64-linux-gnu.
975s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
975s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
975s Selecting previously unselected package gcc.
975s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
975s Unpacking gcc (4:14.2.0-1ubuntu1) ...
975s Selecting previously unselected package libstdc++-14-dev:arm64.
975s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
975s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
975s Selecting previously unselected package g++-14-aarch64-linux-gnu.
975s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
975s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
975s Selecting previously unselected package g++-14.
975s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
975s Unpacking g++-14 (14.2.0-17ubuntu3) ...
975s Selecting previously unselected package g++-aarch64-linux-gnu.
975s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
975s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
975s Selecting previously unselected package g++.
975s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
975s Unpacking g++ (4:14.2.0-1ubuntu1) ...
975s Selecting previously unselected package build-essential.
976s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ...
976s Unpacking build-essential (12.10ubuntu1) ...
976s Selecting previously unselected package dctrl-tools.
976s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ...
976s Unpacking dctrl-tools (2.24-3build3) ...
976s Selecting previously unselected package fonts-dejavu-mono.
976s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ...
976s Unpacking fonts-dejavu-mono (2.37-8) ...
976s Selecting previously unselected package fonts-dejavu-core.
976s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ...
976s Unpacking fonts-dejavu-core (2.37-8) ...
976s Selecting previously unselected package fontconfig-config.
976s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
976s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
976s Selecting previously unselected package libfontconfig1:arm64.
976s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
976s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
976s Selecting previously unselected package fontconfig.
976s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
976s Unpacking fontconfig (2.15.0-2ubuntu1) ...
976s Selecting previously unselected package libgfortran5:arm64.
976s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
976s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
976s Selecting previously unselected package libgfortran-14-dev:arm64.
976s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
976s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
976s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
976s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
976s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
977s Selecting previously unselected package gfortran-14.
977s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
977s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
977s Selecting previously unselected package gfortran-aarch64-linux-gnu.
977s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
977s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
977s Selecting previously unselected package gfortran.
977s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
977s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
977s Selecting previously unselected package icu-devtools.
977s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ...
977s Unpacking icu-devtools (76.1-1ubuntu2) ...
977s Selecting previously unselected package libblas3:arm64.
977s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ...
977s Unpacking libblas3:arm64 (3.12.1-2) ...
977s Selecting previously unselected package libblas-dev:arm64.
977s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ...
977s Unpacking libblas-dev:arm64 (3.12.1-2) ...
977s Selecting previously unselected package libbz2-dev:arm64.
977s Preparing to unpack .../040-libbz2-dev_1.0.8-6_arm64.deb ...
977s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
977s Selecting previously unselected package libpixman-1-0:arm64.
977s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_arm64.deb ...
977s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
977s Selecting previously unselected package libxcb-render0:arm64.
977s Preparing to unpack .../042-libxcb-render0_1.17.0-2_arm64.deb ...
977s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
977s Selecting previously unselected package libxcb-shm0:arm64.
977s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_arm64.deb ...
977s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
977s Selecting previously unselected package libxrender1:arm64.
977s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
977s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
977s Selecting previously unselected package libcairo2:arm64.
977s Preparing to unpack .../045-libcairo2_1.18.2-2_arm64.deb ...
977s Unpacking libcairo2:arm64 (1.18.2-2) ...
977s Selecting previously unselected package libdatrie1:arm64.
977s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_arm64.deb ...
977s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
977s Selecting previously unselected package libdeflate0:arm64.
977s Preparing to unpack .../047-libdeflate0_1.23-1_arm64.deb ...
977s Unpacking libdeflate0:arm64 (1.23-1) ...
977s Selecting previously unselected package libdeflate-dev:arm64.
977s Preparing to unpack .../048-libdeflate-dev_1.23-1_arm64.deb ...
977s Unpacking libdeflate-dev:arm64 (1.23-1) ...
978s Selecting previously unselected package libgraphite2-3:arm64.
978s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
978s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
978s Selecting previously unselected package libharfbuzz0b:arm64.
978s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_arm64.deb ...
978s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
978s Selecting previously unselected package x11-common.
978s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu3_all.deb ...
978s Unpacking x11-common (1:7.7+23ubuntu3) ...
978s Selecting previously unselected package libice6:arm64.
978s Preparing to unpack .../052-libice6_2%3a1.1.1-1_arm64.deb ...
978s Unpacking libice6:arm64 (2:1.1.1-1) ...
978s Selecting previously unselected package libicu-dev:arm64.
978s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_arm64.deb ...
978s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
978s Selecting previously unselected package libjpeg-turbo8:arm64.
978s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
978s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
978s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
978s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
978s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
978s Selecting previously unselected package libjpeg8:arm64.
978s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_arm64.deb ...
978s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
978s Selecting previously unselected package libjpeg8-dev:arm64.
978s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
978s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
978s Selecting previously unselected package libjpeg-dev:arm64.
978s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
978s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
978s Selecting previously unselected package liblapack3:arm64.
978s Preparing to unpack .../059-liblapack3_3.12.1-2_arm64.deb ...
978s Unpacking liblapack3:arm64 (3.12.1-2) ...
979s Selecting previously unselected package liblapack-dev:arm64.
979s Preparing to unpack .../060-liblapack-dev_3.12.1-2_arm64.deb ...
979s Unpacking liblapack-dev:arm64 (3.12.1-2) ...
979s Selecting previously unselected package liblerc4:arm64.
979s Preparing to unpack .../061-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ...
979s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
979s Selecting previously unselected package libncurses-dev:arm64.
979s Preparing to unpack .../062-libncurses-dev_6.5+20250216-2_arm64.deb ...
979s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ...
979s Selecting previously unselected package libthai-data.
979s Preparing to unpack .../063-libthai-data_0.1.29-2build1_all.deb ...
979s Unpacking libthai-data (0.1.29-2build1) ...
979s Selecting previously unselected package libthai0:arm64.
979s Preparing to unpack .../064-libthai0_0.1.29-2build1_arm64.deb ...
979s Unpacking libthai0:arm64 (0.1.29-2build1) ...
979s Selecting previously unselected package libpango-1.0-0:arm64.
979s Preparing to unpack .../065-libpango-1.0-0_1.56.2-1_arm64.deb ...
979s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ...
979s Selecting previously unselected package libpangoft2-1.0-0:arm64.
979s Preparing to unpack .../066-libpangoft2-1.0-0_1.56.2-1_arm64.deb ...
979s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ...
979s Selecting previously unselected package libpangocairo-1.0-0:arm64.
979s Preparing to unpack .../067-libpangocairo-1.0-0_1.56.2-1_arm64.deb ...
979s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ...
979s Selecting previously unselected package libpaper2:arm64.
979s Preparing to unpack .../068-libpaper2_2.2.5-0.3_arm64.deb ...
979s Unpacking libpaper2:arm64 (2.2.5-0.3) ...
979s Selecting previously unselected package libpaper-utils.
979s Preparing to unpack .../069-libpaper-utils_2.2.5-0.3_arm64.deb ...
979s Unpacking libpaper-utils (2.2.5-0.3) ...
979s Selecting previously unselected package libpcre2-16-0:arm64.
979s Preparing to unpack .../070-libpcre2-16-0_10.45-1_arm64.deb ...
979s Unpacking libpcre2-16-0:arm64 (10.45-1) ...
979s Selecting previously unselected package libpcre2-32-0:arm64.
979s Preparing to unpack .../071-libpcre2-32-0_10.45-1_arm64.deb ...
979s Unpacking libpcre2-32-0:arm64 (10.45-1) ...
979s Selecting previously unselected package libpcre2-posix3:arm64.
979s Preparing to unpack .../072-libpcre2-posix3_10.45-1_arm64.deb ...
979s Unpacking libpcre2-posix3:arm64 (10.45-1) ...
979s Selecting previously unselected package libpcre2-dev:arm64.
979s Preparing to unpack .../073-libpcre2-dev_10.45-1_arm64.deb ...
979s Unpacking libpcre2-dev:arm64 (10.45-1) ...
979s Selecting previously unselected package libpkgconf3:arm64.
980s Preparing to unpack .../074-libpkgconf3_1.8.1-4_arm64.deb ...
980s Unpacking libpkgconf3:arm64 (1.8.1-4) ...
980s Selecting previously unselected package zlib1g-dev:arm64.
980s Preparing to unpack .../075-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ...
980s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
980s Selecting previously unselected package libpng-dev:arm64.
980s Preparing to unpack .../076-libpng-dev_1.6.47-1_arm64.deb ...
980s Unpacking libpng-dev:arm64 (1.6.47-1) ...
980s Selecting previously unselected package libreadline-dev:arm64.
980s Preparing to unpack .../077-libreadline-dev_8.2-6_arm64.deb ...
980s Unpacking libreadline-dev:arm64 (8.2-6) ...
980s Selecting previously unselected package libsharpyuv0:arm64.
980s Preparing to unpack .../078-libsharpyuv0_1.5.0-0.1_arm64.deb ...
980s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
980s Selecting previously unselected package libsm6:arm64.
980s Preparing to unpack .../079-libsm6_2%3a1.2.4-1_arm64.deb ...
980s Unpacking libsm6:arm64 (2:1.2.4-1) ...
980s Selecting previously unselected package libtcl8.6:arm64.
980s Preparing to unpack .../080-libtcl8.6_8.6.16+dfsg-1_arm64.deb ...
980s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ...
980s Selecting previously unselected package libjbig0:arm64.
980s Preparing to unpack .../081-libjbig0_2.1-6.1ubuntu2_arm64.deb ...
980s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ...
980s Selecting previously unselected package libwebp7:arm64.
980s Preparing to unpack .../082-libwebp7_1.5.0-0.1_arm64.deb ...
980s Unpacking libwebp7:arm64 (1.5.0-0.1) ...
980s Selecting previously unselected package libtiff6:arm64.
980s Preparing to unpack .../083-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ...
980s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
980s Selecting previously unselected package libxft2:arm64.
980s Preparing to unpack .../084-libxft2_2.3.6-1build1_arm64.deb ...
980s Unpacking libxft2:arm64 (2.3.6-1build1) ...
980s Selecting previously unselected package libxss1:arm64.
980s Preparing to unpack .../085-libxss1_1%3a1.2.3-1build3_arm64.deb ...
980s Unpacking libxss1:arm64 (1:1.2.3-1build3) ...
980s Selecting previously unselected package libtk8.6:arm64.
980s Preparing to unpack .../086-libtk8.6_8.6.16-1_arm64.deb ...
980s Unpacking libtk8.6:arm64 (8.6.16-1) ...
981s Selecting previously unselected package libxt6t64:arm64.
981s Preparing to unpack .../087-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ...
981s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ...
981s Selecting previously unselected package zip.
981s Preparing to unpack .../088-zip_3.0-14ubuntu2_arm64.deb ...
981s Unpacking zip (3.0-14ubuntu2) ...
981s Selecting previously unselected package unzip.
981s Preparing to unpack .../089-unzip_6.0-28ubuntu6_arm64.deb ...
981s Unpacking unzip (6.0-28ubuntu6) ...
981s Selecting previously unselected package xdg-utils.
981s Preparing to unpack .../090-xdg-utils_1.2.1-2ubuntu1_all.deb ...
981s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
981s Selecting previously unselected package r-base-core.
981s Preparing to unpack .../091-r-base-core_4.4.3-1_arm64.deb ...
981s Unpacking r-base-core (4.4.3-1) ...
981s Selecting previously unselected package r-cran-littler.
981s Preparing to unpack .../092-r-cran-littler_0.3.20-2_arm64.deb ...
981s Unpacking r-cran-littler (0.3.20-2) ...
981s Selecting previously unselected package littler.
981s Preparing to unpack .../093-littler_0.3.20-2_all.deb ...
981s Unpacking littler (0.3.20-2) ...
981s Selecting previously unselected package liblzma-dev:arm64.
981s Preparing to unpack .../094-liblzma-dev_5.6.4-1_arm64.deb ...
981s Unpacking liblzma-dev:arm64 (5.6.4-1) ...
981s Selecting previously unselected package pkgconf-bin.
981s Preparing to unpack .../095-pkgconf-bin_1.8.1-4_arm64.deb ...
981s Unpacking pkgconf-bin (1.8.1-4) ...
981s Selecting previously unselected package pkgconf:arm64.
981s Preparing to unpack .../096-pkgconf_1.8.1-4_arm64.deb ...
982s Unpacking pkgconf:arm64 (1.8.1-4) ...
982s Selecting previously unselected package libtirpc-dev:arm64.
982s Preparing to unpack .../097-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ...
982s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
982s Selecting previously unselected package r-base-dev.
982s Preparing to unpack .../098-r-base-dev_4.4.3-1_all.deb ...
982s Unpacking r-base-dev (4.4.3-1) ...
982s Selecting previously unselected package pkg-r-autopkgtest.
982s Preparing to unpack .../099-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
982s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
982s Selecting previously unselected package r-bioc-biocgenerics.
982s Preparing to unpack .../100-r-bioc-biocgenerics_0.52.0-2_all.deb ...
982s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
982s Selecting previously unselected package r-bioc-biobase.
982s Preparing to unpack .../101-r-bioc-biobase_2.66.0-2_arm64.deb ...
982s Unpacking r-bioc-biobase (2.66.0-2) ...
982s Selecting previously unselected package r-cran-pkgkitten.
982s Preparing to unpack .../102-r-cran-pkgkitten_0.2.4-1_all.deb ...
982s Unpacking r-cran-pkgkitten (0.2.4-1) ...
982s Selecting previously unselected package r-cran-rcpp.
982s Preparing to unpack .../103-r-cran-rcpp_1.0.14-1_arm64.deb ...
982s Unpacking r-cran-rcpp (1.0.14-1) ...
982s Selecting previously unselected package r-bioc-rots.
982s Preparing to unpack .../104-r-bioc-rots_1.34.0-2_arm64.deb ...
982s Unpacking r-bioc-rots (1.34.0-2) ...
982s Selecting previously unselected package r-cran-brio.
982s Preparing to unpack .../105-r-cran-brio_1.1.5-1_arm64.deb ...
982s Unpacking r-cran-brio (1.1.5-1) ...
982s Selecting previously unselected package r-cran-ps.
982s Preparing to unpack .../106-r-cran-ps_1.9.0-1_arm64.deb ...
982s Unpacking r-cran-ps (1.9.0-1) ...
982s Selecting previously unselected package r-cran-r6.
982s Preparing to unpack .../107-r-cran-r6_2.6.1-1_all.deb ...
982s Unpacking r-cran-r6 (2.6.1-1) ...
982s Selecting previously unselected package r-cran-processx.
982s Preparing to unpack .../108-r-cran-processx_3.8.6-1_arm64.deb ...
982s Unpacking r-cran-processx (3.8.6-1) ...
982s Selecting previously unselected package r-cran-callr.
983s Preparing to unpack .../109-r-cran-callr_3.7.6-1_all.deb ...
983s Unpacking r-cran-callr (3.7.6-1) ...
983s Selecting previously unselected package r-cran-cli.
983s Preparing to unpack .../110-r-cran-cli_3.6.4-1_arm64.deb ...
983s Unpacking r-cran-cli (3.6.4-1) ...
983s Selecting previously unselected package r-cran-crayon.
983s Preparing to unpack .../111-r-cran-crayon_1.5.3-1_all.deb ...
983s Unpacking r-cran-crayon (1.5.3-1) ...
983s Selecting previously unselected package r-cran-desc.
983s Preparing to unpack .../112-r-cran-desc_1.4.3-1_all.deb ...
983s Unpacking r-cran-desc (1.4.3-1) ...
983s Selecting previously unselected package r-cran-diffobj.
983s Preparing to unpack .../113-r-cran-diffobj_0.3.5-1_arm64.deb ...
983s Unpacking r-cran-diffobj (0.3.5-1) ...
983s Selecting previously unselected package r-cran-digest.
983s Preparing to unpack .../114-r-cran-digest_0.6.37-1_arm64.deb ...
983s Unpacking r-cran-digest (0.6.37-1) ...
983s Selecting previously unselected package r-cran-evaluate.
983s Preparing to unpack .../115-r-cran-evaluate_1.0.3-1_all.deb ...
983s Unpacking r-cran-evaluate (1.0.3-1) ...
983s Selecting previously unselected package r-cran-fs.
983s Preparing to unpack .../116-r-cran-fs_1.6.5+dfsg-1_arm64.deb ...
983s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
983s Selecting previously unselected package r-cran-glue.
983s Preparing to unpack .../117-r-cran-glue_1.8.0-1_arm64.deb ...
983s Unpacking r-cran-glue (1.8.0-1) ...
983s Selecting previously unselected package r-cran-jsonlite.
983s Preparing to unpack .../118-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ...
983s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
983s Selecting previously unselected package r-cran-rlang.
983s Preparing to unpack .../119-r-cran-rlang_1.1.5-1_arm64.deb ...
983s Unpacking r-cran-rlang (1.1.5-1) ...
983s Selecting previously unselected package r-cran-lifecycle.
983s Preparing to unpack .../120-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
983s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
983s Selecting previously unselected package r-cran-magrittr.
983s Preparing to unpack .../121-r-cran-magrittr_2.0.3-1_arm64.deb ...
983s Unpacking r-cran-magrittr (2.0.3-1) ...
983s Selecting previously unselected package r-cran-pkgbuild.
983s Preparing to unpack .../122-r-cran-pkgbuild_1.4.6-1_all.deb ...
983s Unpacking r-cran-pkgbuild (1.4.6-1) ...
983s Selecting previously unselected package r-cran-rprojroot.
984s Preparing to unpack .../123-r-cran-rprojroot_2.0.4-2_all.deb ...
984s Unpacking r-cran-rprojroot (2.0.4-2) ...
984s Selecting previously unselected package r-cran-withr.
984s Preparing to unpack .../124-r-cran-withr_3.0.2+dfsg-1_all.deb ...
984s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
984s Selecting previously unselected package r-cran-pkgload.
984s Preparing to unpack .../125-r-cran-pkgload_1.4.0-1_all.deb ...
984s Unpacking r-cran-pkgload (1.4.0-1) ...
984s Selecting previously unselected package r-cran-praise.
984s Preparing to unpack .../126-r-cran-praise_1.0.0-4build1_all.deb ...
984s Unpacking r-cran-praise (1.0.0-4build1) ...
984s Selecting previously unselected package r-cran-waldo.
984s Preparing to unpack .../127-r-cran-waldo_0.6.1-2_all.deb ...
984s Unpacking r-cran-waldo (0.6.1-2) ...
984s Selecting previously unselected package r-cran-testthat.
984s Preparing to unpack .../128-r-cran-testthat_3.2.3-1_arm64.deb ...
984s Unpacking r-cran-testthat (3.2.3-1) ...
984s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
984s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
984s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
984s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
984s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
984s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
984s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
984s Setting up libxcb-render0:arm64 (1.17.0-2) ...
984s Setting up unzip (6.0-28ubuntu6) ...
984s Setting up x11-common (1:7.7+23ubuntu3) ...
984s Setting up libdeflate0:arm64 (1.23-1) ...
984s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
984s Setting up libreadline-dev:arm64 (8.2-6) ...
984s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
984s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
984s Setting up libpcre2-16-0:arm64 (10.45-1) ...
984s Setting up zip (3.0-14ubuntu2) ...
984s Setting up libpcre2-32-0:arm64 (10.45-1) ...
985s Setting up libblas3:arm64 (3.12.1-2) ...
985s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
985s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
985s Setting up libpkgconf3:arm64 (1.8.1-4) ...
985s Setting up fonts-dejavu-mono (2.37-8) ...
985s Setting up libmpc3:arm64 (1.3.1-1build2) ...
985s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
985s Setting up icu-devtools (76.1-1ubuntu2) ...
985s Setting up fonts-dejavu-core (2.37-8) ...
985s Setting up pkgconf-bin (1.8.1-4) ...
985s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
985s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
985s Setting up libwebp7:arm64 (1.5.0-0.1) ...
985s Setting up liblzma-dev:arm64 (5.6.4-1) ...
985s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
985s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
985s Setting up libpcre2-posix3:arm64 (10.45-1) ...
985s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
985s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
985s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
985s Setting up libthai-data (0.1.29-2build1) ...
985s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
985s Setting up libpaper2:arm64 (2.2.5-0.3) ...
985s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
985s Setting up libisl23:arm64 (0.27-1) ...
985s Setting up libdeflate-dev:arm64 (1.23-1) ...
985s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
985s Setting up xdg-utils (1.2.1-2ubuntu1) ...
985s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
985s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
985s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
985s Setting up libblas-dev:arm64 (3.12.1-2) ...
985s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
985s Setting up dctrl-tools (2.24-3build3) ...
985s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ...
985s Setting up libbz2-dev:arm64 (1.0.8-6) ...
985s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
985s Setting up libice6:arm64 (2:1.1.1-1) ...
985s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
985s Setting up liblapack3:arm64 (3.12.1-2) ...
985s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
985s Setting up libpcre2-dev:arm64 (10.45-1) ...
985s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
985s Setting up libpng-dev:arm64 (1.6.47-1) ...
985s Setting up libpaper-utils (2.2.5-0.3) ...
985s Setting up pkgconf:arm64 (1.8.1-4) ...
985s Setting up libthai0:arm64 (0.1.29-2build1) ...
985s Setting up liblapack-dev:arm64 (3.12.1-2) ...
985s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
985s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
985s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
985s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
985s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
985s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
985s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
985s Setting up libsm6:arm64 (2:1.2.4-1) ...
985s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
985s Setting up fontconfig (2.15.0-2ubuntu1) ...
987s Regenerating fonts cache... done.
987s Setting up libxft2:arm64 (2.3.6-1build1) ...
987s Setting up libtk8.6:arm64 (8.6.16-1) ...
987s Setting up libpango-1.0-0:arm64 (1.56.2-1) ...
987s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
987s Setting up libcairo2:arm64 (1.18.2-2) ...
987s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
987s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
987s Setting up cpp-14 (14.2.0-17ubuntu3) ...
987s Setting up cpp (4:14.2.0-1ubuntu1) ...
987s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
987s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ...
987s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ...
987s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
987s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
987s Setting up gcc-14 (14.2.0-17ubuntu3) ...
987s Setting up r-base-core (4.4.3-1) ...
988s Creating config file /etc/R/Renviron with new version
988s Setting up r-cran-crayon (1.5.3-1) ...
988s Setting up r-cran-ps (1.9.0-1) ...
988s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
988s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
988s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
988s Setting up g++-14 (14.2.0-17ubuntu3) ...
988s Setting up r-cran-r6 (2.6.1-1) ...
988s Setting up r-cran-pkgkitten (0.2.4-1) ...
988s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
988s Setting up r-cran-magrittr (2.0.3-1) ...
988s Setting up r-cran-littler (0.3.20-2) ...
988s Setting up r-cran-fs (1.6.5+dfsg-1) ...
988s Setting up r-cran-rcpp (1.0.14-1) ...
988s Setting up r-cran-brio (1.1.5-1) ...
988s Setting up r-cran-diffobj (0.3.5-1) ...
988s Setting up r-bioc-biocgenerics (0.52.0-2) ...
988s Setting up r-cran-rlang (1.1.5-1) ...
988s Setting up littler (0.3.20-2) ...
988s Setting up r-cran-withr (3.0.2+dfsg-1) ...
988s Setting up r-cran-processx (3.8.6-1) ...
988s Setting up r-cran-praise (1.0.0-4build1) ...
988s Setting up r-cran-digest (0.6.37-1) ...
988s Setting up r-cran-evaluate (1.0.3-1) ...
988s Setting up r-cran-glue (1.8.0-1) ...
988s Setting up r-cran-cli (3.6.4-1) ...
988s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
988s Setting up r-cran-rprojroot (2.0.4-2) ...
988s Setting up gcc (4:14.2.0-1ubuntu1) ...
988s Setting up r-bioc-biobase (2.66.0-2) ...
988s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
988s Setting up r-bioc-rots (1.34.0-2) ...
988s Setting up r-cran-waldo (0.6.1-2) ...
988s Setting up g++ (4:14.2.0-1ubuntu1) ...
988s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
988s Setting up build-essential (12.10ubuntu1) ...
988s Setting up r-cran-callr (3.7.6-1) ...
988s Setting up r-cran-desc (1.4.3-1) ...
988s Setting up gfortran (4:14.2.0-1ubuntu1) ...
988s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
988s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
988s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
988s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
988s Setting up r-cran-pkgbuild (1.4.6-1) ...
988s Setting up r-cran-pkgload (1.4.0-1) ...
988s Setting up r-base-dev (4.4.3-1) ...
988s Setting up r-cran-testthat (3.2.3-1) ...
988s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
988s Processing triggers for libc-bin (2.41-1ubuntu2) ...
988s Processing triggers for man-db (2.13.0-1) ...
990s Processing triggers for install-info (7.1.1-1) ...
991s autopkgtest [15:26:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
991s autopkgtest [15:26:25]: test pkg-r-autopkgtest: [-----------------------
992s Test: Try to load the R library ROTS
992s 
992s R version 4.4.3 (2025-02-28) -- "Trophy Case"
992s Copyright (C) 2025 The R Foundation for Statistical Computing
992s Platform: aarch64-unknown-linux-gnu
992s 
992s R is free software and comes with ABSOLUTELY NO WARRANTY.
992s You are welcome to redistribute it under certain conditions.
992s Type 'license()' or 'licence()' for distribution details.
992s 
992s R is a collaborative project with many contributors.
992s Type 'contributors()' for more information and
992s 'citation()' on how to cite R or R packages in publications.
992s 
992s Type 'demo()' for some demos, 'help()' for on-line help, or
992s 'help.start()' for an HTML browser interface to help.
992s Type 'q()' to quit R.
992s 
992s > library('ROTS')
992s > 
992s > 
992s Other tests are currently unsupported!
992s They will be progressively added.
992s autopkgtest [15:26:26]: test pkg-r-autopkgtest: -----------------------]
993s autopkgtest [15:26:27]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
993s pkg-r-autopkgtest    PASS
993s autopkgtest [15:26:27]: @@@@@@@@@@@@@@@@@@@@ summary
993s pkg-r-autopkgtest    PASS
1011s nova [W] Using flock in prodstack6-arm64
1011s Creating nova instance adt-plucky-arm64-r-bioc-rots-20250315-150954-juju-7f2275-prod-proposed-migration-environment-15-1d283153-5df7-48bc-8518-97cce556bfb9 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
1011s nova [W] Timed out waiting for 699685e4-ad4f-4242-b6ee-2764236f1e1f to get deleted.