0s autopkgtest [15:09:51]: starting date and time: 2025-03-15 15:09:51+0000 0s autopkgtest [15:09:51]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:09:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dfl052ky/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rhtslib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-24.secgroup --name adt-plucky-arm64-r-bioc-rhtslib-20250315-150951-juju-7f2275-prod-proposed-migration-environment-2-b32e5f35-e99d-4630-96f5-97520cf3af0b --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 167s autopkgtest [15:12:38]: testbed dpkg architecture: arm64 167s autopkgtest [15:12:38]: testbed apt version: 2.9.33 167s autopkgtest [15:12:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 167s autopkgtest [15:12:38]: testbed release detected to be: None 168s autopkgtest [15:12:39]: updating testbed package index (apt update) 169s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 169s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 169s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 169s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 169s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 169s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 170s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 170s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 170s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 170s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 170s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 170s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 170s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 170s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 171s Fetched 1094 kB in 2s (689 kB/s) 171s Reading package lists... 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Calculating upgrade... 173s Calculating upgrade... 174s The following packages will be upgraded: 174s python3-jinja2 strace 174s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 608 kB of archives. 174s After this operation, 11.3 kB of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 175s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 175s Fetched 608 kB in 1s (591 kB/s) 176s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 176s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 176s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 176s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 176s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 176s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 176s Setting up strace (6.13+ds-1ubuntu1) ... 176s Processing triggers for man-db (2.13.0-1) ... 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Solving dependencies... 179s The following packages will be REMOVED: 179s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 179s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 179s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 179s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 179s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 179s After this operation, 267 MB disk space will be freed. 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 179s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 179s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 179s Removing libpython3.12t64:arm64 (3.12.9-1) ... 179s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 179s Removing libnsl2:arm64 (1.3.0-3build3) ... 179s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 179s Removing libunwind8:arm64 (1.6.2-3.1) ... 179s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 180s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 182s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 182s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 182s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 182s /etc/kernel/postrm.d/initramfs-tools: 182s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 182s /etc/kernel/postrm.d/zz-flash-kernel: 182s flash-kernel: Kernel 6.11.0-8-generic has been removed. 182s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 183s /etc/kernel/postrm.d/zz-update-grub: 183s Sourcing file `/etc/default/grub' 183s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 183s Generating grub configuration file ... 183s Found linux image: /boot/vmlinuz-6.14.0-10-generic 183s Found initrd image: /boot/initrd.img-6.14.0-10-generic 183s Warning: os-prober will not be executed to detect other bootable partitions. 183s Systems on them will not be added to the GRUB boot configuration. 183s Check GRUB_DISABLE_OS_PROBER documentation entry. 183s Adding boot menu entry for UEFI Firmware Settings ... 184s done 184s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 184s Processing triggers for libc-bin (2.41-1ubuntu1) ... 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 184s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 184s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 184s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 184s autopkgtest [15:12:55]: upgrading testbed (apt dist-upgrade and autopurge) 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 186s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 186s Starting 2 pkgProblemResolver with broken count: 0 186s Done 187s Entering ResolveByKeep 187s 187s Calculating upgrade... 188s The following packages will be upgraded: 188s libc-bin libc-dev-bin libc6 libc6-dev locales 188s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 188s Need to get 9530 kB of archives. 188s After this operation, 0 B of additional disk space will be used. 188s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 190s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 190s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 193s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 194s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 198s Preconfiguring packages ... 198s Fetched 9530 kB in 9s (1047 kB/s) 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 198s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 198s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 198s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 198s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 198s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 199s Setting up libc6:arm64 (2.41-1ubuntu2) ... 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 199s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 199s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 199s Setting up libc-bin (2.41-1ubuntu2) ... 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 199s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 199s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 200s Setting up locales (2.41-1ubuntu2) ... 201s Generating locales (this might take a while)... 203s en_US.UTF-8... done 203s Generation complete. 203s Setting up libc-dev-bin (2.41-1ubuntu2) ... 203s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 203s Processing triggers for man-db (2.13.0-1) ... 204s Processing triggers for systemd (257.3-1ubuntu3) ... 205s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 208s Solving dependencies... 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [15:13:20]: rebooting testbed after setup commands that affected boot 233s autopkgtest [15:13:44]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 235s autopkgtest [15:13:46]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rhtslib 241s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (dsc) [2153 B] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (tar) [4298 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rhtslib 3.2.0+dfsg-2 (diff) [4588 B] 241s gpgv: Signature made Sat Jan 11 21:12:47 2025 UTC 241s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 241s gpgv: issuer "crusoe@debian.org" 241s gpgv: Can't check signature: No public key 241s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rhtslib_3.2.0+dfsg-2.dsc: no acceptable signature found 242s autopkgtest [15:13:53]: testing package r-bioc-rhtslib version 3.2.0+dfsg-2 242s autopkgtest [15:13:53]: build not needed 246s autopkgtest [15:13:57]: test pkg-r-autopkgtest: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s The following NEW packages will be installed: 248s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 248s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 248s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 248s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 248s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 248s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 248s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 248s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 248s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 248s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 248s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 248s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 248s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 248s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 248s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 248s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 248s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 248s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 248s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 248s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 248s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 248s libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 248s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 248s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 248s libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 248s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 248s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 248s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-rhtslib 248s r-bioc-zlibbioc r-cran-base64enc r-cran-biocmanager r-cran-bookdown 248s r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon 248s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 248s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 248s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler 248s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises 248s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown 248s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-tinytex r-cran-withr 248s r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 248s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 248s xdg-utils zip zlib1g-dev 248s 0 upgraded, 195 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 315 MB of archives. 248s After this operation, 1029 MB of additional disk space will be used. 248s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 249s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 258s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 258s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 258s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 258s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 258s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 259s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 259s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 261s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 263s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 265s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 266s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 267s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 269s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 285s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 285s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 285s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 285s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 287s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 297s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 297s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 297s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 297s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 297s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 298s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 298s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 299s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 299s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 299s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 299s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 299s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 299s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 304s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 306s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 306s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 306s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 318s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 318s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 318s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 318s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 318s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 318s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 318s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 318s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 318s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 319s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 319s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 319s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 319s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 319s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 319s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 319s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 319s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 319s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 320s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 320s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 320s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 320s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 320s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 320s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 329s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 329s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 330s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 330s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 330s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 330s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 330s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 330s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 330s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 330s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 330s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 331s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 331s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 331s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 331s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 331s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 331s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 331s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 331s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 331s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 331s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 332s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 333s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 337s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 337s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 338s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 338s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 338s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 338s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 338s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 338s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 338s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 338s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 338s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 338s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 339s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 339s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 339s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 340s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 340s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 341s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 341s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 341s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 341s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 341s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 341s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 341s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 341s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 342s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 343s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 343s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 343s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 343s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 343s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 343s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 343s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 344s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 344s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 344s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 344s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 345s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 345s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 345s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 345s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 345s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 345s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 370s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 370s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 370s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 371s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 371s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 371s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 371s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 390s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 390s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 390s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 391s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 391s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 391s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 391s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 391s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 391s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 391s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 391s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 393s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 393s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 393s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 393s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 393s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 393s Get:152 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 397s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 398s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 398s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 398s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 398s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 399s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 399s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 399s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 399s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 399s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 399s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 399s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 399s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 400s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 403s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 403s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 404s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 404s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 404s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 405s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 405s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 405s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 405s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 405s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 406s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 406s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 406s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 406s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 406s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 406s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 408s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 409s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 411s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 411s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 411s Get:187 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 411s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 416s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 430s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 431s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 487s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 487s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 488s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 488s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 489s Preconfiguring packages ... 489s Fetched 315 MB in 4min 1s (1307 kB/s) 489s Selecting previously unselected package libisl23:arm64. 490s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 490s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 490s Unpacking libisl23:arm64 (0.27-1) ... 490s Selecting previously unselected package libmpc3:arm64. 490s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 490s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 490s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 490s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 490s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 490s Selecting previously unselected package cpp-14. 490s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 490s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 490s Selecting previously unselected package cpp-aarch64-linux-gnu. 490s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 490s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 490s Selecting previously unselected package cpp. 490s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 490s Unpacking cpp (4:14.2.0-1ubuntu1) ... 490s Selecting previously unselected package libcc1-0:arm64. 490s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 490s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 490s Selecting previously unselected package libgomp1:arm64. 490s Preparing to unpack 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.../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 492s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 492s Selecting previously unselected package g++. 492s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 492s Unpacking g++ (4:14.2.0-1ubuntu1) ... 492s Selecting previously unselected package build-essential. 492s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 492s Unpacking build-essential (12.10ubuntu1) ... 492s Selecting previously unselected package dctrl-tools. 492s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 492s Unpacking dctrl-tools (2.24-3build3) ... 492s Selecting previously unselected package fonts-dejavu-mono. 492s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 492s Unpacking fonts-dejavu-mono (2.37-8) ... 492s Selecting previously unselected package fonts-dejavu-core. 492s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 492s Unpacking fonts-dejavu-core (2.37-8) ... 492s Selecting previously unselected package fontconfig-config. 492s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 492s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 492s Selecting previously unselected package libfontconfig1:arm64. 492s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 492s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 492s Selecting previously unselected package fontconfig. 492s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 492s Unpacking fontconfig (2.15.0-2ubuntu1) ... 492s Selecting previously unselected package fonts-font-awesome. 492s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 492s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 492s Selecting previously unselected package fonts-glyphicons-halflings. 492s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 492s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 492s Selecting previously unselected package fonts-lmodern. 492s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 492s Unpacking fonts-lmodern (2.005-1) ... 493s Selecting previously unselected package fonts-mathjax. 493s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 493s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 493s Selecting previously unselected package libgfortran5:arm64. 493s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 493s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 493s Selecting previously unselected package libgfortran-14-dev:arm64. 493s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 493s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 493s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 493s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 493s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 493s Selecting previously unselected package gfortran-14. 493s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 493s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 493s Selecting previously unselected package gfortran-aarch64-linux-gnu. 493s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 493s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 493s Selecting previously unselected package gfortran. 493s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 493s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 493s Selecting previously unselected package icu-devtools. 493s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 493s Unpacking icu-devtools (76.1-1ubuntu2) ... 493s Selecting previously unselected package javascript-common. 493s Preparing to unpack .../042-javascript-common_12_all.deb ... 493s Unpacking javascript-common (12) ... 493s Selecting previously unselected package libio-string-perl. 493s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 493s Unpacking libio-string-perl (1.08-4) ... 493s Selecting previously unselected package liblatex-tounicode-perl. 493s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 493s Unpacking liblatex-tounicode-perl (0.55-1) ... 493s Selecting previously unselected package libbibtex-parser-perl. 493s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 493s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 493s Selecting previously unselected package libblas3:arm64. 493s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 493s Unpacking libblas3:arm64 (3.12.1-2) ... 493s Selecting previously unselected package libblas-dev:arm64. 493s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 493s Unpacking libblas-dev:arm64 (3.12.1-2) ... 493s Selecting previously unselected package libbz2-dev:arm64. 494s Preparing to unpack .../048-libbz2-dev_1.0.8-6_arm64.deb ... 494s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 494s Selecting previously unselected package libpixman-1-0:arm64. 494s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_arm64.deb ... 494s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 494s Selecting previously unselected package libxcb-render0:arm64. 494s Preparing to unpack .../050-libxcb-render0_1.17.0-2_arm64.deb ... 494s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 494s Selecting previously unselected package libxcb-shm0:arm64. 494s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_arm64.deb ... 494s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 494s Selecting previously unselected package libxrender1:arm64. 494s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 494s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 494s Selecting previously unselected package libcairo2:arm64. 494s Preparing to unpack .../053-libcairo2_1.18.2-2_arm64.deb ... 494s Unpacking libcairo2:arm64 (1.18.2-2) ... 494s Selecting previously unselected package libdatrie1:arm64. 494s Preparing to unpack .../054-libdatrie1_0.2.13-3build1_arm64.deb ... 494s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 494s Selecting previously unselected package libdeflate0:arm64. 494s Preparing to unpack .../055-libdeflate0_1.23-1_arm64.deb ... 494s Unpacking libdeflate0:arm64 (1.23-1) ... 494s Selecting previously unselected package libdeflate-dev:arm64. 494s Preparing to unpack .../056-libdeflate-dev_1.23-1_arm64.deb ... 494s Unpacking libdeflate-dev:arm64 (1.23-1) ... 494s Selecting previously unselected package libgraphite2-3:arm64. 494s Preparing to unpack .../057-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 494s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 494s Selecting previously unselected package libharfbuzz0b:arm64. 494s Preparing to unpack .../058-libharfbuzz0b_10.2.0-1_arm64.deb ... 494s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 494s Selecting previously unselected package x11-common. 494s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ... 494s Unpacking x11-common (1:7.7+23ubuntu3) ... 494s Selecting previously unselected package libice6:arm64. 494s Preparing to unpack .../060-libice6_2%3a1.1.1-1_arm64.deb ... 494s Unpacking libice6:arm64 (2:1.1.1-1) ... 494s Selecting previously unselected package libicu-dev:arm64. 494s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_arm64.deb ... 494s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 494s Selecting previously unselected package libjpeg-turbo8:arm64. 494s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 494s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 494s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 494s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 494s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 494s Selecting previously unselected package libjpeg8:arm64. 494s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ... 494s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 494s Selecting previously unselected package libjpeg8-dev:arm64. 494s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 494s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 494s Selecting previously unselected package libjpeg-dev:arm64. 494s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 494s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 494s Selecting previously unselected package libjs-bootstrap. 495s Preparing to unpack .../067-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 495s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 495s Selecting previously unselected package libjs-popper.js. 495s Preparing to unpack .../068-libjs-popper.js_1.16.1+ds-6_all.deb ... 495s Unpacking libjs-popper.js (1.16.1+ds-6) ... 495s Selecting previously unselected package libjs-bootstrap4. 495s Preparing to unpack .../069-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 495s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 495s Selecting previously unselected package libjs-d3. 495s Preparing to unpack .../070-libjs-d3_3.5.17-4_all.deb ... 495s Unpacking libjs-d3 (3.5.17-4) ... 495s Selecting previously unselected package libjs-es5-shim. 495s Preparing to unpack .../071-libjs-es5-shim_4.6.7-2_all.deb ... 495s Unpacking libjs-es5-shim (4.6.7-2) ... 495s Selecting previously unselected package libjs-highlight.js. 495s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 495s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 495s Selecting previously unselected package libjs-jquery. 495s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 495s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 495s Selecting previously unselected package libjs-jquery-datatables. 495s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 495s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 495s Selecting previously unselected package libjs-sifter.js. 495s Preparing to unpack .../075-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 495s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 495s Selecting previously unselected package libjs-microplugin.js. 495s Preparing to unpack .../076-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 495s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 495s Selecting previously unselected package libjs-jquery-selectize.js. 495s Preparing to unpack .../077-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 495s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 495s Selecting previously unselected package libjs-jquery-ui. 495s Preparing to unpack .../078-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 495s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 495s Selecting previously unselected package libjs-json. 495s Preparing to unpack .../079-libjs-json_0~20221030+~1.0.8-1_all.deb ... 495s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 495s Selecting previously unselected package libjs-lunr. 495s Preparing to unpack .../080-libjs-lunr_2.3.9~dfsg-2_all.deb ... 495s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 495s Selecting previously unselected package libjs-prettify. 495s Preparing to unpack .../081-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 495s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 495s Selecting previously unselected package libkpathsea6:arm64. 495s Preparing to unpack .../082-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ... 495s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ... 495s Selecting previously unselected package liblapack3:arm64. 495s Preparing to unpack .../083-liblapack3_3.12.1-2_arm64.deb ... 495s Unpacking liblapack3:arm64 (3.12.1-2) ... 495s Selecting previously unselected package liblapack-dev:arm64. 495s Preparing to unpack .../084-liblapack-dev_3.12.1-2_arm64.deb ... 495s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 496s Selecting previously unselected package liblerc4:arm64. 496s Preparing to unpack .../085-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 496s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 496s Selecting previously unselected package liblua5.4-0:arm64. 496s Preparing to unpack .../086-liblua5.4-0_5.4.7-1_arm64.deb ... 496s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 496s Selecting previously unselected package libmpfi0:arm64. 496s Preparing to unpack .../087-libmpfi0_1.5.4+ds-4_arm64.deb ... 496s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 496s Selecting previously unselected package libncurses-dev:arm64. 496s Preparing to unpack .../088-libncurses-dev_6.5+20250216-2_arm64.deb ... 496s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 496s Selecting previously unselected package libthai-data. 496s Preparing to unpack .../089-libthai-data_0.1.29-2build1_all.deb ... 496s Unpacking libthai-data (0.1.29-2build1) ... 496s Selecting previously unselected package libthai0:arm64. 496s Preparing to unpack .../090-libthai0_0.1.29-2build1_arm64.deb ... 496s Unpacking libthai0:arm64 (0.1.29-2build1) ... 496s Selecting previously unselected package libpango-1.0-0:arm64. 496s Preparing to unpack .../091-libpango-1.0-0_1.56.2-1_arm64.deb ... 496s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 496s Selecting previously unselected package libpangoft2-1.0-0:arm64. 496s Preparing to unpack .../092-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 496s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 496s Selecting previously unselected package libpangocairo-1.0-0:arm64. 496s Preparing to unpack .../093-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 496s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 496s Selecting previously unselected package libpaper2:arm64. 496s Preparing to unpack .../094-libpaper2_2.2.5-0.3_arm64.deb ... 496s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 496s Selecting previously unselected package libpaper-utils. 496s Preparing to unpack .../095-libpaper-utils_2.2.5-0.3_arm64.deb ... 496s Unpacking libpaper-utils (2.2.5-0.3) ... 496s Selecting previously unselected package libpcre2-16-0:arm64. 496s Preparing to unpack .../096-libpcre2-16-0_10.45-1_arm64.deb ... 496s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 496s Selecting previously unselected package libpcre2-32-0:arm64. 496s Preparing to unpack .../097-libpcre2-32-0_10.45-1_arm64.deb ... 496s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 496s Selecting previously unselected package libpcre2-posix3:arm64. 496s Preparing to unpack .../098-libpcre2-posix3_10.45-1_arm64.deb ... 496s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 496s Selecting previously unselected package libpcre2-dev:arm64. 496s Preparing to unpack .../099-libpcre2-dev_10.45-1_arm64.deb ... 496s Unpacking libpcre2-dev:arm64 (10.45-1) ... 496s Selecting previously unselected package libpkgconf3:arm64. 496s Preparing to unpack .../100-libpkgconf3_1.8.1-4_arm64.deb ... 496s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 496s Selecting previously unselected package zlib1g-dev:arm64. 496s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 496s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 496s Selecting previously unselected package libpng-dev:arm64. 496s Preparing to unpack .../102-libpng-dev_1.6.47-1_arm64.deb ... 496s Unpacking libpng-dev:arm64 (1.6.47-1) ... 496s Selecting previously unselected package libpotrace0:arm64. 496s Preparing to unpack .../103-libpotrace0_1.16-2build1_arm64.deb ... 496s Unpacking libpotrace0:arm64 (1.16-2build1) ... 496s Selecting previously unselected package libptexenc1:arm64. 496s Preparing to unpack .../104-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 496s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 496s Selecting previously unselected package libreadline-dev:arm64. 496s Preparing to unpack .../105-libreadline-dev_8.2-6_arm64.deb ... 496s Unpacking libreadline-dev:arm64 (8.2-6) ... 496s Selecting previously unselected package libsharpyuv0:arm64. 496s Preparing to unpack .../106-libsharpyuv0_1.5.0-0.1_arm64.deb ... 496s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 496s Selecting previously unselected package libsm6:arm64. 496s Preparing to unpack .../107-libsm6_2%3a1.2.4-1_arm64.deb ... 496s Unpacking libsm6:arm64 (2:1.2.4-1) ... 496s Selecting previously unselected package libsynctex2:arm64. 496s Preparing to unpack .../108-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 496s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 496s Selecting previously unselected package libtcl8.6:arm64. 496s Preparing to unpack .../109-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 496s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 497s Selecting previously unselected package libteckit0:arm64. 497s Preparing to unpack .../110-libteckit0_2.5.12+ds1-1_arm64.deb ... 497s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 497s Selecting previously unselected package libtexlua53-5:arm64. 497s Preparing to unpack .../111-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 497s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 497s Selecting previously unselected package libjbig0:arm64. 497s Preparing to unpack .../112-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 497s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 497s Selecting previously unselected package libwebp7:arm64. 497s Preparing to unpack .../113-libwebp7_1.5.0-0.1_arm64.deb ... 497s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 497s Selecting previously unselected package libtiff6:arm64. 497s Preparing to unpack .../114-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 497s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 497s Selecting previously unselected package libxft2:arm64. 497s Preparing to unpack .../115-libxft2_2.3.6-1build1_arm64.deb ... 497s Unpacking libxft2:arm64 (2.3.6-1build1) ... 497s Selecting previously unselected package libxss1:arm64. 497s Preparing to unpack .../116-libxss1_1%3a1.2.3-1build3_arm64.deb ... 497s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 497s Selecting previously unselected package libtk8.6:arm64. 497s Preparing to unpack .../117-libtk8.6_8.6.16-1_arm64.deb ... 497s Unpacking libtk8.6:arm64 (8.6.16-1) ... 497s Selecting previously unselected package libxt6t64:arm64. 497s Preparing to unpack .../118-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 497s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 497s Selecting previously unselected package libxmu6:arm64. 497s Preparing to unpack .../119-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 497s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 497s Selecting previously unselected package libxpm4:arm64. 497s Preparing to unpack .../120-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 497s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 497s Selecting previously unselected package libxaw7:arm64. 497s Preparing to unpack .../121-libxaw7_2%3a1.0.16-1_arm64.deb ... 497s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 497s Selecting previously unselected package libxi6:arm64. 497s Preparing to unpack .../122-libxi6_2%3a1.8.2-1_arm64.deb ... 497s Unpacking libxi6:arm64 (2:1.8.2-1) ... 497s Selecting previously unselected package libzzip-0-13t64:arm64. 497s Preparing to unpack .../123-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 497s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 497s Selecting previously unselected package zip. 497s Preparing to unpack .../124-zip_3.0-14ubuntu2_arm64.deb ... 497s Unpacking zip (3.0-14ubuntu2) ... 497s Selecting previously unselected package unzip. 497s Preparing to unpack .../125-unzip_6.0-28ubuntu6_arm64.deb ... 497s Unpacking unzip (6.0-28ubuntu6) ... 497s Selecting previously unselected package xdg-utils. 497s Preparing to unpack .../126-xdg-utils_1.2.1-2ubuntu1_all.deb ... 497s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 497s Selecting previously unselected package r-base-core. 497s Preparing to unpack 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unselected package pandoc-data. 498s Preparing to unpack .../133-pandoc-data_3.1.11.1-3build1_all.deb ... 498s Unpacking pandoc-data (3.1.11.1-3build1) ... 498s Selecting previously unselected package pandoc. 498s Preparing to unpack .../134-pandoc_3.1.11.1+ds-2_arm64.deb ... 498s Unpacking pandoc (3.1.11.1+ds-2) ... 499s Selecting previously unselected package liblzma-dev:arm64. 499s Preparing to unpack .../135-liblzma-dev_5.6.4-1_arm64.deb ... 499s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 499s Selecting previously unselected package pkgconf-bin. 499s Preparing to unpack .../136-pkgconf-bin_1.8.1-4_arm64.deb ... 499s Unpacking pkgconf-bin (1.8.1-4) ... 499s Selecting previously unselected package pkgconf:arm64. 499s Preparing to unpack .../137-pkgconf_1.8.1-4_arm64.deb ... 499s Unpacking pkgconf:arm64 (1.8.1-4) ... 499s Selecting previously unselected package libtirpc-dev:arm64. 499s Preparing to unpack .../138-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 499s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 499s Selecting previously unselected package r-base-dev. 499s Preparing to unpack .../139-r-base-dev_4.4.3-1_all.deb ... 499s Unpacking r-base-dev (4.4.3-1) ... 499s Selecting previously unselected package pkg-r-autopkgtest. 499s Preparing to unpack .../140-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 499s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 499s Selecting previously unselected package r-bioc-biocgenerics. 499s Preparing to unpack .../141-r-bioc-biocgenerics_0.52.0-2_all.deb ... 499s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 499s Selecting previously unselected package r-cran-base64enc. 499s Preparing to unpack .../142-r-cran-base64enc_0.1-3-3_arm64.deb ... 499s Unpacking r-cran-base64enc (0.1-3-3) ... 499s Selecting previously unselected package r-cran-digest. 499s Preparing to unpack .../143-r-cran-digest_0.6.37-1_arm64.deb ... 499s Unpacking r-cran-digest (0.6.37-1) ... 499s Selecting previously unselected package r-cran-fastmap. 499s Preparing to unpack .../144-r-cran-fastmap_1.2.0-1_arm64.deb ... 499s Unpacking r-cran-fastmap (1.2.0-1) ... 499s Selecting previously unselected package r-cran-rlang. 499s Preparing to unpack .../145-r-cran-rlang_1.1.5-1_arm64.deb ... 499s Unpacking r-cran-rlang (1.1.5-1) ... 499s Selecting previously unselected package r-cran-htmltools. 499s Preparing to unpack .../146-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 499s Unpacking r-cran-htmltools (0.5.8.1-1) ... 499s Selecting previously unselected package r-cran-evaluate. 499s Preparing to unpack .../147-r-cran-evaluate_1.0.3-1_all.deb ... 499s Unpacking r-cran-evaluate (1.0.3-1) ... 499s Selecting previously unselected package r-cran-xfun. 499s Preparing to unpack .../148-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 499s Unpacking r-cran-xfun (0.51+dfsg-1) ... 500s Selecting previously unselected package r-cran-highr. 500s Preparing to unpack .../149-r-cran-highr_0.11+dfsg-1_all.deb ... 500s Unpacking r-cran-highr (0.11+dfsg-1) ... 500s Selecting previously unselected package r-cran-yaml. 500s Preparing to unpack .../150-r-cran-yaml_2.3.10-1_arm64.deb ... 500s Unpacking r-cran-yaml (2.3.10-1) ... 500s Selecting previously unselected package libjs-mathjax. 500s Preparing to unpack .../151-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 500s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 500s Selecting previously unselected package r-cran-knitr. 500s Preparing to unpack .../152-r-cran-knitr_1.49+dfsg-1_all.deb ... 500s Unpacking r-cran-knitr (1.49+dfsg-1) ... 500s Selecting previously unselected package r-cran-cachem. 500s Preparing to unpack .../153-r-cran-cachem_1.1.0-1_arm64.deb ... 500s Unpacking r-cran-cachem (1.1.0-1) ... 500s Selecting previously unselected package r-cran-jquerylib. 500s Preparing to unpack .../154-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 500s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 500s Selecting previously unselected package r-cran-jsonlite. 500s Preparing to unpack .../155-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 500s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 501s Selecting previously unselected package r-cran-cli. 501s Preparing to unpack .../156-r-cran-cli_3.6.4-1_arm64.deb ... 501s Unpacking r-cran-cli (3.6.4-1) ... 501s Selecting previously unselected package r-cran-glue. 501s Preparing to unpack .../157-r-cran-glue_1.8.0-1_arm64.deb ... 501s Unpacking r-cran-glue (1.8.0-1) ... 501s Selecting previously unselected package r-cran-lifecycle. 501s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 501s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 501s Selecting previously unselected package r-cran-memoise. 501s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 501s Unpacking r-cran-memoise (2.0.1-1) ... 501s Selecting previously unselected package r-cran-mime. 501s Preparing to unpack .../160-r-cran-mime_0.12-2_arm64.deb ... 501s Unpacking r-cran-mime (0.12-2) ... 501s Selecting previously unselected package r-cran-fs. 501s Preparing to unpack .../161-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 501s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 501s Selecting previously unselected package r-cran-r6. 501s Preparing to unpack .../162-r-cran-r6_2.6.1-1_all.deb ... 501s Unpacking r-cran-r6 (2.6.1-1) ... 501s Selecting previously unselected package r-cran-rappdirs. 501s Preparing to unpack .../163-r-cran-rappdirs_0.3.3-1_arm64.deb ... 501s Unpacking r-cran-rappdirs (0.3.3-1) ... 501s Selecting previously unselected package r-cran-sass. 501s Preparing to unpack .../164-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 501s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 501s Selecting previously unselected package r-cran-bslib. 501s Preparing to unpack .../165-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 501s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 501s Selecting previously unselected package r-cran-fontawesome. 501s Preparing to unpack .../166-r-cran-fontawesome_0.5.3-1_all.deb ... 501s Unpacking r-cran-fontawesome (0.5.3-1) ... 501s Selecting previously unselected package r-cran-tinytex. 501s Preparing to unpack .../167-r-cran-tinytex_0.56-1_all.deb ... 501s Unpacking r-cran-tinytex (0.56-1) ... 501s Selecting previously unselected package libjs-modernizr. 502s Preparing to unpack .../168-libjs-modernizr_3.13.0-0.1_all.deb ... 502s Unpacking libjs-modernizr (3.13.0-0.1) ... 502s Selecting previously unselected package r-cran-pkgkitten. 502s Preparing to unpack .../169-r-cran-pkgkitten_0.2.4-1_all.deb ... 502s Unpacking r-cran-pkgkitten (0.2.4-1) ... 502s Selecting previously unselected package r-cran-rcpp. 502s Preparing to unpack .../170-r-cran-rcpp_1.0.14-1_arm64.deb ... 502s Unpacking r-cran-rcpp (1.0.14-1) ... 502s Selecting previously unselected package r-cran-later. 502s Preparing to unpack .../171-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 502s Unpacking r-cran-later (1.4.1+dfsg-1) ... 502s Selecting previously unselected package r-cran-magrittr. 502s Preparing to unpack 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502s Selecting previously unselected package r-cran-withr. 502s Preparing to unpack .../178-r-cran-withr_3.0.2+dfsg-1_all.deb ... 502s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 502s Selecting previously unselected package r-cran-commonmark. 502s Preparing to unpack .../179-r-cran-commonmark_1.9.2-2_arm64.deb ... 502s Unpacking r-cran-commonmark (1.9.2-2) ... 503s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 503s Preparing to unpack .../180-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 503s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 503s Selecting previously unselected package r-cran-shiny. 503s Preparing to unpack .../181-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 503s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 503s Selecting previously unselected package r-cran-rmarkdown. 503s Preparing to unpack .../182-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 503s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 503s Selecting previously unselected package r-cran-bookdown. 503s Preparing to unpack .../183-r-cran-bookdown_0.42+dfsg-1_all.deb ... 503s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 503s Selecting previously unselected package r-cran-biocmanager. 503s Preparing to unpack .../184-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 503s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 503s Selecting previously unselected package tex-common. 503s Preparing to unpack .../185-tex-common_6.19_all.deb ... 503s Unpacking tex-common (6.19) ... 503s Selecting previously unselected package t1utils. 503s Preparing to unpack .../186-t1utils_1.41-4build3_arm64.deb ... 503s Unpacking t1utils (1.41-4build3) ... 503s Selecting previously unselected package texlive-binaries. 503s Preparing to unpack .../187-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 503s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 503s Selecting previously unselected package texlive-base. 503s Preparing to unpack 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.../193-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 507s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 507s Selecting previously unselected package r-bioc-rhtslib. 507s Preparing to unpack .../194-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 507s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 507s Setting up libjs-json (0~20221030+~1.0.8-1) ... 507s Setting up javascript-common (12) ... 507s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 507s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 507s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 507s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 507s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 507s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 507s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 507s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 507s Setting up libxi6:arm64 (2:1.8.2-1) ... 507s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 507s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 507s Setting up libjs-popper.js 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nothing! 508s Setting up libio-string-perl (1.08-4) ... 508s Setting up zip (3.0-14ubuntu2) ... 508s Setting up libpcre2-32-0:arm64 (10.45-1) ... 508s Setting up libblas3:arm64 (3.12.1-2) ... 508s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 508s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 508s Setting up libpkgconf3:arm64 (1.8.1-4) ... 508s Setting up libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 508s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 508s Setting up t1utils (1.41-4build3) ... 508s Setting up libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 508s Setting up libjs-d3 (3.5.17-4) ... 508s Setting up fonts-dejavu-mono (2.37-8) ... 508s Setting up libmpc3:arm64 (1.3.1-1build2) ... 508s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 508s Setting up libmpfi0:arm64 (1.5.4+ds-4) ... 508s Setting up icu-devtools (76.1-1ubuntu2) ... 508s Setting up 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provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 508s Setting up dctrl-tools (2.24-3build3) ... 508s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 508s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 508s Setting up libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 508s Setting up libbz2-dev:arm64 (1.0.8-6) ... 508s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 508s Setting up libpotrace0:arm64 (1.16-2build1) ... 508s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 508s Setting up libice6:arm64 (2:1.1.1-1) ... 508s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 508s Setting up liblapack3:arm64 (3.12.1-2) ... 508s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 508s Setting up libpcre2-dev:arm64 (10.45-1) ... 508s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 509s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 509s Setting up libpng-dev:arm64 (1.6.47-1) ... 509s Setting up libpaper-utils (2.2.5-0.3) ... 509s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 509s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 509s Setting up pkgconf:arm64 (1.8.1-4) ... 509s Setting up libthai0:arm64 (0.1.29-2build1) ... 509s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 509s Setting up libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 509s Setting up pandoc (3.1.11.1+ds-2) ... 509s Setting up liblapack-dev:arm64 (3.12.1-2) ... 509s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 509s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 509s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 509s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 509s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 509s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 509s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 509s Setting up libsm6:arm64 (2:1.2.4-1) ... 509s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 509s Setting up fontconfig (2.15.0-2ubuntu1) ... 511s Regenerating fonts cache... done. 511s Setting up libxft2:arm64 (2.3.6-1build1) ... 511s Setting up libtk8.6:arm64 (8.6.16-1) ... 511s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 511s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 511s Setting up libcairo2:arm64 (1.18.2-2) ... 511s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 511s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 511s Setting up cpp-14 (14.2.0-17ubuntu3) ... 511s Setting up cpp (4:14.2.0-1ubuntu1) ... 511s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 511s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 511s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 511s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 511s Setting up libxmu6:arm64 (2:1.1.3-3build2) ... 511s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 511s Setting up libxaw7:arm64 (2:1.0.16-1) ... 511s Setting up gcc-14 (14.2.0-17ubuntu3) ... 511s Setting up r-base-core (4.4.3-1) ... 511s Creating config file /etc/R/Renviron with new version 511s Setting up r-cran-crayon (1.5.3-1) ... 511s Setting up r-cran-sourcetools (0.1.7-1-1) ... 511s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 511s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 511s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 511s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 511s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 511s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 511s Setting up r-cran-commonmark (1.9.2-2) ... 511s Setting up g++-14 (14.2.0-17ubuntu3) ... 511s Setting up r-cran-r6 (2.6.1-1) ... 511s Setting up r-cran-pkgkitten (0.2.4-1) ... 511s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 511s Setting up texlive-base (2024.20250114-1) ... 512s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 512s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 512s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 512s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 513s Setting up r-cran-magrittr (2.0.3-1) ... 513s Setting up r-cran-rappdirs (0.3.3-1) ... 513s Setting up r-cran-littler (0.3.20-2) ... 513s Setting up r-cran-fs (1.6.5+dfsg-1) ... 513s Setting up r-cran-rcpp (1.0.14-1) ... 513s Setting up r-bioc-biocgenerics (0.52.0-2) ... 513s Setting up r-cran-rlang (1.1.5-1) ... 513s Setting up littler (0.3.20-2) ... 513s Setting up r-cran-xfun (0.51+dfsg-1) ... 513s Setting up 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r-cran-knitr (1.49+dfsg-1) ... 513s Setting up g++ (4:14.2.0-1ubuntu1) ... 513s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 513s Setting up r-cran-cachem (1.1.0-1) ... 513s Setting up r-cran-sass (0.4.9+dfsg-1) ... 513s Setting up build-essential (12.10ubuntu1) ... 513s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 513s Setting up r-cran-fontawesome (0.5.3-1) ... 513s Setting up gfortran (4:14.2.0-1ubuntu1) ... 513s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 513s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 513s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 513s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 513s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 513s Setting up texlive-bibtex-extra (2024.20250114-1) ... 513s Setting up r-cran-memoise (2.0.1-1) ... 513s Setting up r-cran-promises (1.3.2+dfsg-1) ... 513s Setting up r-base-dev (4.4.3-1) ... 513s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 513s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 513s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 513s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 513s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 513s Setting up r-cran-bookdown (0.42+dfsg-1) ... 513s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 513s Processing triggers for libc-bin (2.41-1ubuntu2) ... 513s Processing triggers for man-db (2.13.0-1) ... 515s Processing triggers for install-info (7.1.1-1) ... 515s Processing triggers for tex-common (6.19) ... 515s Running updmap-sys. This may take some time... done. 515s Running mktexlsr /var/lib/texmf ... done. 516s Building format(s) --all. 554s This may take some time... done. 555s autopkgtest [15:19:06]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 555s autopkgtest [15:19:06]: test pkg-r-autopkgtest: [----------------------- 555s Test: Try to load the R library Rhtslib 556s 556s R version 4.4.3 (2025-02-28) -- "Trophy Case" 556s Copyright (C) 2025 The R Foundation for Statistical Computing 556s Platform: aarch64-unknown-linux-gnu 556s 556s R is free software and comes with ABSOLUTELY NO WARRANTY. 556s You are welcome to redistribute it under certain conditions. 556s Type 'license()' or 'licence()' for distribution details. 556s 556s R is a collaborative project with many contributors. 556s Type 'contributors()' for more information and 556s 'citation()' on how to cite R or R packages in publications. 556s 556s Type 'demo()' for some demos, 'help()' for on-line help, or 556s 'help.start()' for an HTML browser interface to help. 556s Type 'q()' to quit R. 556s 556s > library('Rhtslib') 556s Rhtslib htslib version 1.18 556s > 556s > 556s Other tests are currently unsupported! 556s They will be progressively added. 556s autopkgtest [15:19:07]: test pkg-r-autopkgtest: -----------------------] 557s autopkgtest [15:19:08]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 557s pkg-r-autopkgtest PASS 557s autopkgtest [15:19:08]: @@@@@@@@@@@@@@@@@@@@ summary 557s pkg-r-autopkgtest PASS 578s nova [W] Using flock in prodstack6-arm64 578s flock: timeout while waiting to get lock 578s Creating nova instance adt-plucky-arm64-r-bioc-rhtslib-20250315-150951-juju-7f2275-prod-proposed-migration-environment-2-b32e5f35-e99d-4630-96f5-97520cf3af0b from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 578s nova [W] Timed out waiting for 99f7b5f2-7827-4583-b08f-1d3ae3a6689b to get deleted.