0s autopkgtest [21:58:38]: starting date and time: 2024-11-01 21:58:38+0000 1s autopkgtest [21:58:39]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 1s autopkgtest [21:58:39]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x6jq864o/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-httr2,src:r-cran-biocmanager,src:r-cran-commonmark,src:r-cran-curl,src:r-cran-datawizard,src:r-cran-gdtools,src:r-cran-insight,src:r-cran-ps,src:r-cran-thematic,src:r-cran-vcr,src:r-cran-xfun --apt-upgrade r-bioc-rcpi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-httr2/1.0.5-1 r-cran-biocmanager/1.30.25+dfsg-1 r-cran-commonmark/1.9.2-1 r-cran-curl/5.2.3+dfsg-1 r-cran-datawizard/0.12.3+dfsg-1 r-cran-gdtools/0.4.0-1 r-cran-insight/0.20.4+dfsg-1 r-cran-ps/1.8.0-1 r-cran-thematic/0.1.6-1 r-cran-vcr/1.6.0+dfsg-1 r-cran-xfun/0.48+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-44.secgroup --name adt-plucky-arm64-r-bioc-rcpi-20241101-215838-juju-7f2275-prod-proposed-migration-environment-15-ce0bf5d0-b163-4d30-bce4-06c6c91625bc --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 64s autopkgtest [21:59:42]: testbed dpkg architecture: arm64 65s autopkgtest [21:59:43]: testbed apt version: 2.9.8 65s autopkgtest [21:59:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 66s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 66s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 66s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [41.0 kB] 66s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2639 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [176 kB] 67s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [230 kB] 67s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 67s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [1932 kB] 68s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [34.6 kB] 68s Fetched 5184 kB in 2s (2131 kB/s) 68s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Calculating upgrade... 72s The following packages will be upgraded: 72s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 72s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 72s libblockdev3 libevdev2 libftdi1-2 libinih1 libpipeline1 nano 72s python3-lazr.uri 73s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Need to get 594 kB of archives. 73s After this operation, 19.5 kB of additional disk space will be used. 73s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libevdev2 arm64 1.13.3+dfsg-1 [36.0 kB] 73s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpipeline1 arm64 1.5.8-1 [30.6 kB] 73s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 nano arm64 8.2-1 [289 kB] 73s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-utils3 arm64 3.2.0-2 [18.8 kB] 73s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-crypto3 arm64 3.2.0-2 [22.6 kB] 73s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-fs3 arm64 3.2.0-2 [35.8 kB] 73s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-loop3 arm64 3.2.0-2 [7276 B] 73s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-mdraid3 arm64 3.2.0-2 [12.8 kB] 73s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-nvme3 arm64 3.2.0-2 [17.2 kB] 73s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-part3 arm64 3.2.0-2 [14.9 kB] 73s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev-swap3 arm64 3.2.0-2 [7832 B] 73s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libblockdev3 arm64 3.2.0-2 [52.4 kB] 73s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libftdi1-2 arm64 1.5-7 [28.4 kB] 73s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libinih1 arm64 58-1ubuntu1 [7412 B] 73s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-lazr.uri all 1.0.6-4 [13.6 kB] 74s Fetched 594 kB in 1s (933 kB/s) 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 74s Preparing to unpack .../00-libevdev2_1.13.3+dfsg-1_arm64.deb ... 74s Unpacking libevdev2:arm64 (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 74s Preparing to unpack .../01-libpipeline1_1.5.8-1_arm64.deb ... 74s Unpacking libpipeline1:arm64 (1.5.8-1) over (1.5.7-2) ... 74s Preparing to unpack .../02-nano_8.2-1_arm64.deb ... 74s Unpacking nano (8.2-1) over (8.1-1) ... 74s Preparing to unpack .../03-libblockdev-utils3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-utils3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../04-libblockdev-crypto3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-crypto3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../05-libblockdev-fs3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-fs3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../06-libblockdev-loop3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-loop3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../07-libblockdev-mdraid3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-mdraid3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../08-libblockdev-nvme3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-nvme3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../09-libblockdev-part3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-part3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../10-libblockdev-swap3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev-swap3:arm64 (3.2.0-2) over (3.1.1-2) ... 74s Preparing to unpack .../11-libblockdev3_3.2.0-2_arm64.deb ... 74s Unpacking libblockdev3:arm64 (3.2.0-2) over (3.1.1-2) ... 75s Preparing to unpack .../12-libftdi1-2_1.5-7_arm64.deb ... 75s Unpacking libftdi1-2:arm64 (1.5-7) over (1.5-6build5) ... 75s Preparing to unpack .../13-libinih1_58-1ubuntu1_arm64.deb ... 75s Unpacking libinih1:arm64 (58-1ubuntu1) over (55-1ubuntu2) ... 75s Preparing to unpack .../14-python3-lazr.uri_1.0.6-4_all.deb ... 75s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 75s Setting up libpipeline1:arm64 (1.5.8-1) ... 75s Setting up libinih1:arm64 (58-1ubuntu1) ... 75s Setting up python3-lazr.uri (1.0.6-4) ... 75s Setting up libftdi1-2:arm64 (1.5-7) ... 75s Setting up libblockdev-utils3:arm64 (3.2.0-2) ... 75s Setting up libblockdev-nvme3:arm64 (3.2.0-2) ... 75s Setting up nano (8.2-1) ... 75s Setting up libblockdev-fs3:arm64 (3.2.0-2) ... 75s Setting up libevdev2:arm64 (1.13.3+dfsg-1) ... 75s Setting up libblockdev-mdraid3:arm64 (3.2.0-2) ... 75s Setting up libblockdev-crypto3:arm64 (3.2.0-2) ... 75s Setting up libblockdev-swap3:arm64 (3.2.0-2) ... 75s Setting up libblockdev-loop3:arm64 (3.2.0-2) ... 75s Setting up libblockdev3:arm64 (3.2.0-2) ... 75s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 75s Setting up libblockdev-part3:arm64 (3.2.0-2) ... 75s Processing triggers for libc-bin (2.40-1ubuntu3) ... 75s Processing triggers for man-db (2.12.1-3) ... 76s Processing triggers for install-info (7.1.1-1) ... 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 78s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 78s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 78s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 78s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 80s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Calculating upgrade... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [22:00:03]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 85s autopkgtest [22:00:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rcpi 88s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rcpi 1.40.2+ds-1 (dsc) [2212 B] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rcpi 1.40.2+ds-1 (tar) [1494 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rcpi 1.40.2+ds-1 (diff) [6848 B] 88s gpgv: Signature made Sat Sep 7 12:10:31 2024 UTC 88s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 88s gpgv: Can't check signature: No public key 88s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rcpi_1.40.2+ds-1.dsc: no acceptable signature found 88s autopkgtest [22:00:06]: testing package r-bioc-rcpi version 1.40.2+ds-1 88s autopkgtest [22:00:06]: build not needed 90s autopkgtest [22:00:08]: test pkg-r-autopkgtest: preparing testbed 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 93s The following additional packages will be installed: 93s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 93s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 93s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 93s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 93s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 93s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 93s javascript-common libasan8 libblas-dev libblas3 libbz2-dev libcairo2 93s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev 93s libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 93s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 93s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 93s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 93s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 93s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 93s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 93s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 93s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 93s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 93s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev 93s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 93s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 93s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler 93s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 93s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 93s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings 93s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-gosemsim 93s r-bioc-iranges r-bioc-keggrest r-bioc-pwalign r-bioc-rcpi r-bioc-s4vectors 93s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 93s r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio 93s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 93s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 93s r-cran-desc r-cran-diffobj r-cran-digest r-cran-doparallel r-cran-evaluate 93s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-fs 93s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 93s r-cran-httr2 r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr 93s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 93s r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 93s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 93s r-cran-processx r-cran-promises r-cran-ps r-cran-r.methodss3 r-cran-r.oo 93s r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 93s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite 93s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-testthat 93s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 93s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-yulab.utils unzip 93s x11-common xdg-utils zip zlib1g-dev 93s Suggested packages: 93s cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib 93s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 93s gdb-aarch64-linux-gnu gfortran-doc gfortran-14-doc libcoarrays-dev apache2 93s | lighttpd | httpd liblapack-doc icu-doc libjs-jquery-ui-docs 93s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc 93s readline-doc libstdc++-14-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended 93s texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 93s wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex 93s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 93s r-base-html texlive-base texlive-latex-base texlive-plain-generic 93s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 93s r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-bioc-all 93s r-bioc-limma r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools 93s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-bioc-bsgenome 93s r-bioc-genomicfeatures r-cran-data.table r-bioc-genomicalignments 93s r-bioc-annotationhub r-cran-biocmanager r-cran-readr r-cran-tidyr 93s r-cran-tidyselect r-cran-rocr r-cran-markdown r-bioc-summarizedexperiment 93s r-cran-matrix r-bioc-shortread r-cran-rmariadb r-cran-roxygen2 r-cran-ff 93s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-getopt r-cran-dplyr 93s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 93s r-cran-scales r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr 93s r-cran-inline r-cran-spelling r-cran-bench r-cran-here r-cran-hms 93s r-cran-purrr r-cran-plm r-cran-zoo 93s Recommended packages: 93s bzip2-doc node-jquery libpng-tools r-recommended r-doc-html r-cran-covr 93s r-cran-future r-cran-ggplot2 r-cran-thematic r-cran-mockery r-cran-spelling 93s r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-bench 93s r-cran-decor r-cran-lobstr r-cran-progress r-cran-scales r-cran-webutils 93s r-cran-gh r-cran-runit r-cran-caret r-cran-mlbench r-cran-rpart 93s r-cran-lattice r-cran-unitizer r-cran-dplyr r-cran-rsvg r-cran-markdown 93s r-cran-testit r-cran-cairo r-cran-ragg r-cran-jpeg r-cran-readr r-cran-clipr 93s r-cran-docopt r-cran-webfakes r-cran-r.rsp r-cran-sf r-cran-formatr 93s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 93s r-cran-webshot r-cran-svglite node-highlight.js r-cran-lintr 93s r-cran-tidyverse r-cran-sodium r-cran-lubridate r-cran-bitops 93s r-cran-mathjaxr r-cran-remotes r-cran-usethis r-cran-purrr r-cran-pingr 93s r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-mockr r-cran-dbitest 93s r-cran-gert r-cran-hms r-cran-rvest r-cran-dt r-cran-data.table 93s r-cran-formattable r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-renv 93s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 93s x11-xserver-utils 93s The following NEW packages will be installed: 93s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu 93s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 93s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 93s fonts-glyphicons-halflings fonts-mathjax g++ g++-14 g++-14-aarch64-linux-gnu 93s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 93s gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu 93s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 93s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 93s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 93s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 93s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 93s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 93s libjs-highlight.js libjs-jquery libjs-jquery-datatables 93s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 93s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 93s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 93s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 93s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 93s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 93s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 93s libstdc++-14-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 93s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 93s libxrender1 libxss1 libxt6t64 littler node-bootstrap-sass node-html5shiv 93s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 93s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 93s r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 93s r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-gosemsim r-bioc-iranges 93s r-bioc-keggrest r-bioc-pwalign r-bioc-rcpi r-bioc-s4vectors 93s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 93s r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio 93s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 93s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 93s r-cran-desc r-cran-diffobj r-cran-digest r-cran-doparallel r-cran-evaluate 93s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-foreach r-cran-fs 93s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 93s r-cran-httr2 r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr 93s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 93s r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 93s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 93s r-cran-processx r-cran-promises r-cran-ps r-cran-r.methodss3 r-cran-r.oo 93s r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 93s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite 93s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-testthat 93s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 93s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml r-cran-yulab.utils unzip 93s x11-common xdg-utils zip zlib1g-dev 93s 0 upgraded, 224 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 272 MB/272 MB of archives. 93s After this operation, 914 MB of additional disk space will be used. 93s Get:1 /tmp/autopkgtest.SXYEva/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 94s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 94s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 94s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [10.6 MB] 99s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-7ubuntu1 [1030 B] 99s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 99s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 99s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-7ubuntu1 [49.7 kB] 99s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-7ubuntu1 [145 kB] 99s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-7ubuntu1 [27.8 kB] 99s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-7ubuntu1 [2893 kB] 100s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-7ubuntu1 [1283 kB] 101s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-7ubuntu1 [2691 kB] 102s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-7ubuntu1 [1151 kB] 102s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-7ubuntu1 [1599 kB] 103s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-7ubuntu1 [2594 kB] 104s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [20.9 MB] 108s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-7ubuntu1 [515 kB] 108s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 108s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 108s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-7ubuntu1 [2474 kB] 108s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [12.1 MB] 109s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-7ubuntu1 [19.8 kB] 109s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 109s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 109s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 109s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 109s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 109s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 109s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-1.1ubuntu2 [37.4 kB] 109s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-1.1ubuntu2 [142 kB] 109s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-1.1ubuntu2 [190 kB] 109s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 110s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 110s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 110s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-7ubuntu1 [438 kB] 110s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-7ubuntu1 [498 kB] 110s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-7ubuntu1 [11.4 MB] 111s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-7ubuntu1 [11.6 kB] 111s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1022 B] 111s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.1.0-2ubuntu1 [1162 B] 111s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 74.2-1ubuntu4 [210 kB] 111s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 11+nmu1 [5936 B] 111s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 111s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.0-3build2 [120 kB] 111s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 111s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.42.2-1build1 [204 kB] 111s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 111s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 111s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 111s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 111s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 111s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.21-1 [46.2 kB] 111s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.21-1 [53.8 kB] 111s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 111s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 9.0.0-1 [486 kB] 111s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 111s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.0.10-1build3 [41.1 kB] 111s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 74.2-1ubuntu4 [11.9 MB] 112s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 112s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 112s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 112s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 112s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 112s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 112s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 112s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 112s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 112s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 112s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 112s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 112s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 112s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 112s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 112s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 112s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 112s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 112s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 112s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 112s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.0-3build2 [4419 kB] 112s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu2 [154 kB] 112s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.6-3build2 [158 kB] 112s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5-2 [385 kB] 112s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 112s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 112s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.54.0+ds-2 [233 kB] 112s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-2 [48.8 kB] 112s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-2 [27.5 kB] 112s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper1 arm64 1.1.29build1 [13.4 kB] 112s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 1.1.29build1 [8490 B] 112s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu3 [200 kB] 112s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu3 [187 kB] 112s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu3 [6704 B] 112s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.42-4ubuntu3 [694 kB] 112s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-3ubuntu1 [31.5 kB] 112s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 112s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.44-1 [268 kB] 112s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-5 [179 kB] 112s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [16.3 kB] 112s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.3-1build3 [15.6 kB] 112s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1build1 [978 kB] 112s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 112s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.4.0-0.1 [192 kB] 113s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 113s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 113s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 113s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.14-1build1 [767 kB] 113s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 113s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14 [172 kB] 113s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 113s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 113s Get:112 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.1-1 [28.3 MB] 114s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-1 [96.4 kB] 114s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-1 [2486 B] 114s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 114s Get:116 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 115s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 115s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3 [78.7 kB] 115s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 116s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.2-2 [179 kB] 116s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-3ubuntu1 [20.9 kB] 116s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-3ubuntu1 [16.8 kB] 116s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 116s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.1-1 [4338 B] 116s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 116s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.50.0-2 [605 kB] 116s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.64.0-4 [2148 kB] 116s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] 116s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.38.1-1 [2300 kB] 116s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 116s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 116s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 116s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.4-1 [1707 kB] 116s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 116s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 116s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 116s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 116s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 116s Get:139 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 116s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 116s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 116s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 116s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 116s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 116s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.7-2 [1222 kB] 116s Get:146 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-curl arm64 5.2.3+dfsg-1 [179 kB] 116s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 116s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 116s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 116s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 116s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.2.0+dfsg-1 [404 kB] 116s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 116s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 116s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 116s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [10.1 kB] 116s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] 116s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] 116s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] 117s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3883 kB] 117s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 117s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.72.1+dfsg-1 [13.2 MB] 117s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.44.1+dfsg-1 [188 kB] 117s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.66.0-1 [4848 kB] 117s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-go.db all 3.19.1-1 [17.7 MB] 118s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.36-1 [197 kB] 118s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 118s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 118s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 118s Get:169 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-httr2 all 1.0.5-1 [641 kB] 118s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 118s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 118s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 118s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.4+dfsg-1 [244 kB] 118s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yulab.utils all 0.1.4-1 [79.3 kB] 118s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 118s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.13-1 [1981 kB] 118s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-gosemsim arm64 2.30.2-1 [1098 kB] 118s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-pwalign arm64 1.0.0-2 [752 kB] 118s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 118s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 118s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 118s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-doparallel all 1.0.17-1 [189 kB] 118s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 118s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rcpi all 1.40.2+ds-1 [1162 kB] 118s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 118s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-brio arm64 1.1.5-1 [39.1 kB] 118s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 118s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 118s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 118s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 119s Get:191 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-ps arm64 1.8.0-1 [395 kB] 119s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-processx arm64 3.8.4-1 [352 kB] 119s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-callr all 3.7.6-1 [458 kB] 119s Get:194 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-commonmark arm64 1.9.2-1 [128 kB] 119s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 119s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 119s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 0.24.0-1 [93.5 kB] 119s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 119s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 119s Get:200 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 r-cran-xfun arm64 0.48+dfsg-1 [542 kB] 119s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 119s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 119s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.0+dfsg-1 [286 kB] 119s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 120s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.8-2 [108 kB] 120s Get:206 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 120s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.47+dfsg-1 [911 kB] 120s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 120s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 120s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 120s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 120s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgload all 1.4.0-1 [247 kB] 120s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 120s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 120s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 120s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.51-1 [145 kB] 120s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 120s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 120s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 120s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 120s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 120s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.27+dfsg-1 [1501 kB] 120s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 120s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-testthat arm64 3.2.1.1-1 [1629 kB] 121s Preconfiguring packages ... 122s Fetched 272 MB in 27s (10.0 MB/s) 122s Selecting previously unselected package libisl23:arm64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79705 files and directories currently installed.) 122s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 122s Unpacking libisl23:arm64 (0.27-1) ... 122s Selecting previously unselected package libmpc3:arm64. 122s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 122s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 122s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 122s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 122s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 122s Selecting previously unselected package cpp-14. 122s Preparing to unpack .../003-cpp-14_14.2.0-7ubuntu1_arm64.deb ... 122s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 122s Selecting previously unselected package cpp-aarch64-linux-gnu. 122s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 122s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 122s Selecting previously unselected package cpp. 122s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 122s Unpacking cpp (4:14.1.0-2ubuntu1) ... 122s Selecting previously unselected package libcc1-0:arm64. 122s Preparing to unpack .../006-libcc1-0_14.2.0-7ubuntu1_arm64.deb ... 122s Unpacking libcc1-0:arm64 (14.2.0-7ubuntu1) ... 122s Selecting previously unselected package libgomp1:arm64. 122s Preparing to unpack .../007-libgomp1_14.2.0-7ubuntu1_arm64.deb ... 122s Unpacking libgomp1:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package libitm1:arm64. 123s Preparing to unpack .../008-libitm1_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking libitm1:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package libasan8:arm64. 123s Preparing to unpack .../009-libasan8_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking libasan8:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package liblsan0:arm64. 123s Preparing to unpack .../010-liblsan0_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking liblsan0:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package libtsan2:arm64. 123s Preparing to unpack .../011-libtsan2_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking libtsan2:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package libubsan1:arm64. 123s Preparing to unpack .../012-libubsan1_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking libubsan1:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package libhwasan0:arm64. 123s Preparing to unpack .../013-libhwasan0_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking libhwasan0:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package libgcc-14-dev:arm64. 123s Preparing to unpack .../014-libgcc-14-dev_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking libgcc-14-dev:arm64 (14.2.0-7ubuntu1) ... 123s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 123s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 123s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 124s Selecting previously unselected package gcc-14. 124s Preparing to unpack .../016-gcc-14_14.2.0-7ubuntu1_arm64.deb ... 124s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 124s Selecting previously unselected package gcc-aarch64-linux-gnu. 124s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 124s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 124s Selecting previously unselected package gcc. 124s Preparing to unpack .../018-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 124s Unpacking gcc (4:14.1.0-2ubuntu1) ... 124s Selecting previously unselected package libstdc++-14-dev:arm64. 124s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-7ubuntu1_arm64.deb ... 124s Unpacking libstdc++-14-dev:arm64 (14.2.0-7ubuntu1) ... 124s Selecting previously unselected package g++-14-aarch64-linux-gnu. 124s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 124s Unpacking g++-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 125s Selecting previously unselected package g++-14. 125s Preparing to unpack .../021-g++-14_14.2.0-7ubuntu1_arm64.deb ... 125s Unpacking g++-14 (14.2.0-7ubuntu1) ... 125s Selecting previously unselected package g++-aarch64-linux-gnu. 125s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 125s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 125s Selecting previously unselected package g++. 125s Preparing to unpack .../023-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 125s Unpacking g++ (4:14.1.0-2ubuntu1) ... 125s Selecting previously unselected package build-essential. 125s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 125s Unpacking build-essential (12.10ubuntu1) ... 125s Selecting previously unselected package dctrl-tools. 125s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 125s Unpacking dctrl-tools (2.24-3build3) ... 125s Selecting previously unselected package fonts-dejavu-mono. 125s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 125s Unpacking fonts-dejavu-mono (2.37-8) ... 125s Selecting previously unselected package fonts-dejavu-core. 125s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 125s Unpacking fonts-dejavu-core (2.37-8) ... 125s Selecting previously unselected package fontconfig-config. 125s Preparing to unpack .../028-fontconfig-config_2.15.0-1.1ubuntu2_arm64.deb ... 126s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 126s Selecting previously unselected package libfontconfig1:arm64. 126s Preparing to unpack .../029-libfontconfig1_2.15.0-1.1ubuntu2_arm64.deb ... 126s Unpacking libfontconfig1:arm64 (2.15.0-1.1ubuntu2) ... 126s Selecting previously unselected package fontconfig. 126s Preparing to unpack .../030-fontconfig_2.15.0-1.1ubuntu2_arm64.deb ... 126s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 126s Selecting previously unselected package fonts-font-awesome. 126s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 126s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 126s Selecting previously unselected package fonts-glyphicons-halflings. 126s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 126s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 126s Selecting previously unselected package fonts-mathjax. 126s Preparing to unpack .../033-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 126s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 126s Selecting previously unselected package libgfortran5:arm64. 126s Preparing to unpack .../034-libgfortran5_14.2.0-7ubuntu1_arm64.deb ... 126s Unpacking libgfortran5:arm64 (14.2.0-7ubuntu1) ... 126s Selecting previously unselected package libgfortran-14-dev:arm64. 126s Preparing to unpack .../035-libgfortran-14-dev_14.2.0-7ubuntu1_arm64.deb ... 126s Unpacking libgfortran-14-dev:arm64 (14.2.0-7ubuntu1) ... 126s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 126s Preparing to unpack .../036-gfortran-14-aarch64-linux-gnu_14.2.0-7ubuntu1_arm64.deb ... 126s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-7ubuntu1) ... 127s Selecting previously unselected package gfortran-14. 127s Preparing to unpack .../037-gfortran-14_14.2.0-7ubuntu1_arm64.deb ... 127s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 127s Selecting previously unselected package gfortran-aarch64-linux-gnu. 127s Preparing to unpack .../038-gfortran-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 127s Unpacking gfortran-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 127s Selecting previously unselected package gfortran. 127s Preparing to unpack .../039-gfortran_4%3a14.1.0-2ubuntu1_arm64.deb ... 127s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 127s Selecting previously unselected package icu-devtools. 127s Preparing to unpack .../040-icu-devtools_74.2-1ubuntu4_arm64.deb ... 127s Unpacking icu-devtools (74.2-1ubuntu4) ... 127s Selecting previously unselected package javascript-common. 127s Preparing to unpack .../041-javascript-common_11+nmu1_all.deb ... 127s Unpacking javascript-common (11+nmu1) ... 127s Selecting previously unselected package libblas3:arm64. 127s Preparing to unpack .../042-libblas3_3.12.0-3build2_arm64.deb ... 127s Unpacking libblas3:arm64 (3.12.0-3build2) ... 127s Selecting previously unselected package libblas-dev:arm64. 127s Preparing to unpack .../043-libblas-dev_3.12.0-3build2_arm64.deb ... 127s Unpacking libblas-dev:arm64 (3.12.0-3build2) ... 127s Selecting previously unselected package libbz2-dev:arm64. 127s Preparing to unpack .../044-libbz2-dev_1.0.8-6_arm64.deb ... 127s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 127s Selecting previously unselected package libpixman-1-0:arm64. 127s Preparing to unpack .../045-libpixman-1-0_0.42.2-1build1_arm64.deb ... 127s Unpacking libpixman-1-0:arm64 (0.42.2-1build1) ... 127s Selecting previously unselected package libxcb-render0:arm64. 127s Preparing to unpack .../046-libxcb-render0_1.17.0-2_arm64.deb ... 127s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 127s Selecting previously unselected package libxcb-shm0:arm64. 127s Preparing to unpack .../047-libxcb-shm0_1.17.0-2_arm64.deb ... 127s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 127s Selecting previously unselected package libxrender1:arm64. 127s Preparing to unpack .../048-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 127s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 127s Selecting previously unselected package libcairo2:arm64. 127s Preparing to unpack .../049-libcairo2_1.18.2-2_arm64.deb ... 127s Unpacking libcairo2:arm64 (1.18.2-2) ... 128s Selecting previously unselected package libdatrie1:arm64. 128s Preparing to unpack .../050-libdatrie1_0.2.13-3build1_arm64.deb ... 128s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 128s Selecting previously unselected package libdeflate0:arm64. 128s Preparing to unpack .../051-libdeflate0_1.21-1_arm64.deb ... 128s Unpacking libdeflate0:arm64 (1.21-1) ... 128s Selecting previously unselected package libdeflate-dev:arm64. 128s Preparing to unpack .../052-libdeflate-dev_1.21-1_arm64.deb ... 128s Unpacking libdeflate-dev:arm64 (1.21-1) ... 128s Selecting previously unselected package libgraphite2-3:arm64. 128s Preparing to unpack .../053-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 128s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 128s Selecting previously unselected package libharfbuzz0b:arm64. 128s Preparing to unpack .../054-libharfbuzz0b_9.0.0-1_arm64.deb ... 128s Unpacking libharfbuzz0b:arm64 (9.0.0-1) ... 128s Selecting previously unselected package x11-common. 128s Preparing to unpack .../055-x11-common_1%3a7.7+23ubuntu3_all.deb ... 128s Unpacking x11-common (1:7.7+23ubuntu3) ... 128s Selecting previously unselected package libice6:arm64. 128s Preparing to unpack .../056-libice6_2%3a1.0.10-1build3_arm64.deb ... 128s Unpacking libice6:arm64 (2:1.0.10-1build3) ... 128s Selecting previously unselected package libicu-dev:arm64. 128s Preparing to unpack .../057-libicu-dev_74.2-1ubuntu4_arm64.deb ... 128s Unpacking libicu-dev:arm64 (74.2-1ubuntu4) ... 128s Selecting previously unselected package libjpeg-turbo8:arm64. 128s Preparing to unpack .../058-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 128s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 129s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 129s 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... 130s Selecting previously unselected package liblua5.4-0:arm64. 130s Preparing to unpack .../080-liblua5.4-0_5.4.6-3build2_arm64.deb ... 130s Unpacking liblua5.4-0:arm64 (5.4.6-3build2) ... 130s Selecting previously unselected package libncurses-dev:arm64. 130s Preparing to unpack .../081-libncurses-dev_6.5-2_arm64.deb ... 130s Unpacking libncurses-dev:arm64 (6.5-2) ... 130s Selecting previously unselected package libthai-data. 130s Preparing to unpack .../082-libthai-data_0.1.29-2build1_all.deb ... 130s Unpacking libthai-data (0.1.29-2build1) ... 131s Selecting previously unselected package libthai0:arm64. 131s Preparing to unpack .../083-libthai0_0.1.29-2build1_arm64.deb ... 131s Unpacking libthai0:arm64 (0.1.29-2build1) ... 131s Selecting previously unselected package libpango-1.0-0:arm64. 131s Preparing to unpack .../084-libpango-1.0-0_1.54.0+ds-2_arm64.deb ... 131s Unpacking libpango-1.0-0:arm64 (1.54.0+ds-2) ... 131s Selecting previously unselected package libpangoft2-1.0-0:arm64. 131s Preparing to unpack .../085-libpangoft2-1.0-0_1.54.0+ds-2_arm64.deb ... 131s Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-2) ... 131s Selecting previously unselected package libpangocairo-1.0-0:arm64. 131s Preparing to unpack .../086-libpangocairo-1.0-0_1.54.0+ds-2_arm64.deb ... 131s Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-2) ... 131s Selecting previously unselected package libpaper1:arm64. 131s Preparing to unpack .../087-libpaper1_1.1.29build1_arm64.deb ... 131s Unpacking libpaper1:arm64 (1.1.29build1) ... 131s Selecting previously unselected package libpaper-utils. 131s Preparing to unpack .../088-libpaper-utils_1.1.29build1_arm64.deb ... 131s Unpacking libpaper-utils (1.1.29build1) ... 131s Selecting previously unselected package libpcre2-16-0:arm64. 131s Preparing to unpack .../089-libpcre2-16-0_10.42-4ubuntu3_arm64.deb ... 131s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 131s Selecting previously unselected package libpcre2-32-0:arm64. 131s Preparing to unpack .../090-libpcre2-32-0_10.42-4ubuntu3_arm64.deb ... 131s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 131s Selecting previously unselected package libpcre2-posix3:arm64. 131s Preparing to unpack .../091-libpcre2-posix3_10.42-4ubuntu3_arm64.deb ... 131s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 131s Selecting previously unselected package libpcre2-dev:arm64. 131s Preparing to unpack .../092-libpcre2-dev_10.42-4ubuntu3_arm64.deb ... 131s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu3) ... 131s Selecting previously unselected package libpkgconf3:arm64. 131s Preparing to unpack .../093-libpkgconf3_1.8.1-3ubuntu1_arm64.deb ... 131s Unpacking libpkgconf3:arm64 (1.8.1-3ubuntu1) ... 131s Selecting previously unselected package zlib1g-dev:arm64. 131s Preparing to unpack .../094-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 131s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 131s Selecting previously unselected package libpng-dev:arm64. 131s Preparing to unpack .../095-libpng-dev_1.6.44-1_arm64.deb ... 131s Unpacking libpng-dev:arm64 (1.6.44-1) ... 131s Selecting previously unselected package libreadline-dev:arm64. 131s Preparing to unpack .../096-libreadline-dev_8.2-5_arm64.deb ... 131s Unpacking libreadline-dev:arm64 (8.2-5) ... 131s Selecting previously unselected package libsharpyuv0:arm64. 131s Preparing to unpack .../097-libsharpyuv0_1.4.0-0.1_arm64.deb ... 131s Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... 131s Selecting previously unselected package libsm6:arm64. 131s Preparing to unpack .../098-libsm6_2%3a1.2.3-1build3_arm64.deb ... 131s Unpacking libsm6:arm64 (2:1.2.3-1build3) ... 131s Selecting previously unselected package libtcl8.6:arm64. 132s Preparing to unpack .../099-libtcl8.6_8.6.14+dfsg-1build1_arm64.deb ... 132s Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 132s Selecting previously unselected package libjbig0:arm64. 132s Preparing to unpack .../100-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 132s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 132s Selecting previously unselected package libwebp7:arm64. 132s Preparing to unpack .../101-libwebp7_1.4.0-0.1_arm64.deb ... 132s Unpacking libwebp7:arm64 (1.4.0-0.1) ... 132s Selecting previously unselected package libtiff6:arm64. 132s Preparing to unpack .../102-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 132s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 132s Selecting previously unselected package libxft2:arm64. 132s Preparing to unpack .../103-libxft2_2.3.6-1build1_arm64.deb ... 132s Unpacking libxft2:arm64 (2.3.6-1build1) ... 132s Selecting previously unselected package libxss1:arm64. 132s Preparing to unpack .../104-libxss1_1%3a1.2.3-1build3_arm64.deb ... 132s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 132s Selecting previously unselected package libtk8.6:arm64. 132s Preparing to unpack .../105-libtk8.6_8.6.14-1build1_arm64.deb ... 132s Unpacking libtk8.6:arm64 (8.6.14-1build1) ... 132s Selecting previously unselected package libxt6t64:arm64. 132s Preparing to unpack .../106-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 132s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 132s Selecting previously unselected package zip. 132s Preparing to unpack .../107-zip_3.0-14_arm64.deb ... 132s Unpacking zip (3.0-14) ... 132s Selecting previously unselected package unzip. 132s Preparing to unpack .../108-unzip_6.0-28ubuntu6_arm64.deb ... 132s Unpacking unzip (6.0-28ubuntu6) ... 132s Selecting previously unselected package xdg-utils. 132s Preparing to unpack .../109-xdg-utils_1.2.1-0ubuntu1_all.deb ... 132s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 132s Selecting previously unselected package r-base-core. 132s Preparing to unpack .../110-r-base-core_4.4.1-1_arm64.deb ... 132s Unpacking r-base-core (4.4.1-1) ... 133s Selecting previously unselected package r-cran-littler. 133s Preparing to unpack .../111-r-cran-littler_0.3.20-1_arm64.deb ... 133s Unpacking r-cran-littler (0.3.20-1) ... 133s Selecting previously unselected package littler. 133s Preparing to unpack .../112-littler_0.3.20-1_all.deb ... 133s Unpacking littler (0.3.20-1) ... 133s Selecting previously unselected package node-bootstrap-sass. 133s Preparing to unpack .../113-node-bootstrap-sass_3.4.3-2_all.deb ... 133s Unpacking node-bootstrap-sass (3.4.3-2) ... 133s Selecting previously unselected package node-html5shiv. 133s Preparing to unpack .../114-node-html5shiv_3.7.3+dfsg-5_all.deb ... 133s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 133s Selecting previously unselected package node-normalize.css. 133s Preparing to unpack .../115-node-normalize.css_8.0.1-5_all.deb ... 133s Unpacking node-normalize.css (8.0.1-5) ... 133s Selecting previously unselected package pandoc-data. 133s Preparing to unpack .../116-pandoc-data_3.1.11.1-3_all.deb ... 133s Unpacking pandoc-data (3.1.11.1-3) ... 133s Selecting previously unselected package pandoc. 133s Preparing to unpack .../117-pandoc_3.1.11.1+ds-2_arm64.deb ... 133s Unpacking pandoc (3.1.11.1+ds-2) ... 135s Selecting previously unselected package liblzma-dev:arm64. 135s Preparing to unpack .../118-liblzma-dev_5.6.2-2_arm64.deb ... 135s Unpacking liblzma-dev:arm64 (5.6.2-2) ... 135s Selecting previously unselected package pkgconf-bin. 135s Preparing to unpack .../119-pkgconf-bin_1.8.1-3ubuntu1_arm64.deb ... 135s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 135s Selecting previously unselected package pkgconf:arm64. 135s Preparing to unpack .../120-pkgconf_1.8.1-3ubuntu1_arm64.deb ... 135s Unpacking pkgconf:arm64 (1.8.1-3ubuntu1) ... 135s Selecting previously unselected package libtirpc-dev:arm64. 135s Preparing to unpack .../121-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 135s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 135s Selecting previously unselected package r-base-dev. 135s Preparing to unpack .../122-r-base-dev_4.4.1-1_all.deb ... 135s Unpacking r-base-dev (4.4.1-1) ... 135s Selecting previously unselected package pkg-r-autopkgtest. 135s Preparing to unpack .../123-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 135s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 135s Selecting previously unselected package r-bioc-biocgenerics. 135s Preparing to unpack .../124-r-bioc-biocgenerics_0.50.0-2_all.deb ... 135s Unpacking r-bioc-biocgenerics (0.50.0-2) ... 135s Selecting previously unselected package r-bioc-biobase. 135s Preparing to unpack .../125-r-bioc-biobase_2.64.0-4_arm64.deb ... 135s Unpacking r-bioc-biobase (2.64.0-4) ... 135s Selecting previously unselected package r-bioc-s4vectors. 135s Preparing to unpack .../126-r-bioc-s4vectors_0.42.1+dfsg-2_arm64.deb ... 135s Unpacking r-bioc-s4vectors (0.42.1+dfsg-2) ... 135s Selecting previously unselected package r-bioc-iranges. 135s Preparing to unpack .../127-r-bioc-iranges_2.38.1-1_arm64.deb ... 135s Unpacking r-bioc-iranges (2.38.1-1) ... 135s Selecting previously unselected package r-cran-dbi. 135s Preparing to unpack .../128-r-cran-dbi_1.2.3-1_all.deb ... 135s Unpacking r-cran-dbi (1.2.3-1) ... 135s Selecting previously unselected package r-cran-bit. 135s Preparing to unpack .../129-r-cran-bit_4.0.5-1_arm64.deb ... 135s Unpacking r-cran-bit (4.0.5-1) ... 135s Selecting previously unselected package r-cran-bit64. 136s Preparing to unpack .../130-r-cran-bit64_4.0.5-1_arm64.deb ... 136s Unpacking r-cran-bit64 (4.0.5-1) ... 136s Selecting previously unselected package r-cran-rlang. 136s Preparing to unpack .../131-r-cran-rlang_1.1.4-1_arm64.deb ... 136s Unpacking r-cran-rlang (1.1.4-1) ... 136s Selecting previously unselected package r-cran-cli. 136s Preparing to unpack .../132-r-cran-cli_3.6.2-1_arm64.deb ... 136s Unpacking r-cran-cli (3.6.2-1) ... 136s Selecting previously unselected package r-cran-glue. 136s Preparing to unpack .../133-r-cran-glue_1.7.0-1_arm64.deb ... 136s Unpacking r-cran-glue (1.7.0-1) ... 136s Selecting previously unselected package r-cran-lifecycle. 136s Preparing to unpack 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r-cran-pkgconfig. 136s Preparing to unpack .../140-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 136s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 136s Selecting previously unselected package r-cran-plogr. 136s Preparing to unpack .../141-r-cran-plogr_0.2.0-3build1_all.deb ... 136s Unpacking r-cran-plogr (0.2.0-3build1) ... 136s Selecting previously unselected package r-cran-cpp11. 136s Preparing to unpack .../142-r-cran-cpp11_0.4.7-1_all.deb ... 136s Unpacking r-cran-cpp11 (0.4.7-1) ... 136s Selecting previously unselected package r-cran-rsqlite. 136s Preparing to unpack .../143-r-cran-rsqlite_2.3.7-2_arm64.deb ... 136s Unpacking r-cran-rsqlite (2.3.7-2) ... 136s Selecting previously unselected package r-cran-curl. 137s Preparing to unpack .../144-r-cran-curl_5.2.3+dfsg-1_arm64.deb ... 137s Unpacking r-cran-curl (5.2.3+dfsg-1) ... 137s Selecting previously unselected package r-cran-jsonlite. 137s Preparing to unpack .../145-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 137s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 137s Selecting previously unselected package r-cran-mime. 137s Preparing to unpack .../146-r-cran-mime_0.12-2_arm64.deb ... 137s Unpacking r-cran-mime (0.12-2) ... 137s Selecting previously unselected package r-cran-sys. 137s Preparing to unpack .../147-r-cran-sys_3.4.2-1_arm64.deb ... 137s Unpacking r-cran-sys (3.4.2-1) ... 137s Selecting previously unselected package r-cran-askpass. 137s Preparing to unpack .../148-r-cran-askpass_1.2.0-1_arm64.deb ... 137s Unpacking r-cran-askpass (1.2.0-1) ... 137s Selecting previously unselected package r-cran-openssl. 137s Preparing to unpack .../149-r-cran-openssl_2.2.0+dfsg-1_arm64.deb ... 137s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 137s Selecting previously unselected package r-cran-r6. 137s Preparing to unpack .../150-r-cran-r6_2.5.1-1_all.deb ... 137s Unpacking r-cran-r6 (2.5.1-1) ... 137s Selecting previously unselected package r-cran-httr. 137s Preparing to unpack .../151-r-cran-httr_1.4.7+dfsg-1_all.deb ... 137s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 137s Selecting previously unselected package r-cran-png. 137s Preparing to unpack .../152-r-cran-png_0.1-8-1build2_arm64.deb ... 137s Unpacking r-cran-png (0.1-8-1build2) ... 137s Selecting previously unselected package r-bioc-zlibbioc. 137s Preparing to unpack .../153-r-bioc-zlibbioc_1.50.0+dfsg-2_all.deb ... 137s Unpacking r-bioc-zlibbioc (1.50.0+dfsg-2) ... 137s Selecting previously unselected package r-bioc-xvector. 137s Preparing to unpack .../154-r-bioc-xvector_0.44.0-1_arm64.deb ... 137s Unpacking r-bioc-xvector (0.44.0-1) ... 137s Selecting previously unselected package r-bioc-ucsc.utils. 137s Preparing to unpack .../155-r-bioc-ucsc.utils_1.0.0+ds-2_all.deb ... 137s Unpacking r-bioc-ucsc.utils (1.0.0+ds-2) ... 137s Selecting previously unselected package r-bioc-genomeinfodbdata. 137s Preparing to unpack .../156-r-bioc-genomeinfodbdata_1.2.12-1_all.deb ... 137s Unpacking r-bioc-genomeinfodbdata (1.2.12-1) ... 138s Selecting previously unselected package r-bioc-genomeinfodb. 138s Preparing to unpack .../157-r-bioc-genomeinfodb_1.40.1+dfsg-1_all.deb ... 138s Unpacking r-bioc-genomeinfodb (1.40.1+dfsg-1) ... 138s Selecting previously unselected package r-cran-crayon. 138s Preparing to unpack .../158-r-cran-crayon_1.5.2-1_all.deb ... 138s Unpacking r-cran-crayon (1.5.2-1) ... 138s Selecting previously unselected package r-bioc-biostrings. 138s Preparing to unpack .../159-r-bioc-biostrings_2.72.1+dfsg-1_arm64.deb ... 138s Unpacking r-bioc-biostrings (2.72.1+dfsg-1) ... 138s Selecting previously unselected package r-bioc-keggrest. 138s Preparing to unpack .../160-r-bioc-keggrest_1.44.1+dfsg-1_all.deb ... 138s Unpacking r-bioc-keggrest (1.44.1+dfsg-1) ... 138s Selecting previously unselected package r-bioc-annotationdbi. 138s Preparing to unpack .../161-r-bioc-annotationdbi_1.66.0-1_all.deb ... 138s Unpacking r-bioc-annotationdbi (1.66.0-1) ... 138s Selecting previously unselected package r-bioc-go.db. 138s Preparing to unpack .../162-r-bioc-go.db_3.19.1-1_all.deb ... 138s Unpacking r-bioc-go.db (3.19.1-1) ... 139s Selecting previously unselected package r-cran-digest. 139s Preparing to unpack .../163-r-cran-digest_0.6.36-1_arm64.deb ... 139s Unpacking r-cran-digest (0.6.36-1) ... 139s Selecting previously unselected package r-cran-magrittr. 139s Preparing to unpack .../164-r-cran-magrittr_2.0.3-1_arm64.deb ... 139s Unpacking r-cran-magrittr (2.0.3-1) ... 139s Selecting previously unselected package r-cran-rappdirs. 139s Preparing to unpack .../165-r-cran-rappdirs_0.3.3-1_arm64.deb ... 139s Unpacking r-cran-rappdirs (0.3.3-1) ... 139s Selecting previously unselected package r-cran-withr. 139s Preparing to unpack .../166-r-cran-withr_3.0.0+dfsg-1_all.deb ... 139s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-httr2. 139s Preparing to unpack .../167-r-cran-httr2_1.0.5-1_all.deb ... 139s Unpacking r-cran-httr2 (1.0.5-1) ... 139s Selecting previously unselected package r-cran-r.methodss3. 139s Preparing to unpack .../168-r-cran-r.methodss3_1.8.2-1_all.deb ... 139s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 139s Selecting previously unselected package r-cran-r.oo. 139s Preparing to unpack .../169-r-cran-r.oo_1.26.0-1_all.deb ... 139s Unpacking r-cran-r.oo (1.26.0-1) ... 139s Selecting previously unselected package r-cran-r.utils. 139s Preparing to unpack .../170-r-cran-r.utils_2.12.3-1_all.deb ... 139s Unpacking r-cran-r.utils (2.12.3-1) ... 139s Selecting previously unselected package r-cran-fs. 140s Preparing to unpack .../171-r-cran-fs_1.6.4+dfsg-1_arm64.deb ... 140s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 140s Selecting previously unselected package r-cran-yulab.utils. 140s Preparing to unpack .../172-r-cran-yulab.utils_0.1.4-1_all.deb ... 140s Unpacking r-cran-yulab.utils (0.1.4-1) ... 140s Selecting previously unselected package r-cran-pkgkitten. 140s Preparing to unpack .../173-r-cran-pkgkitten_0.2.4-1_all.deb ... 140s Unpacking r-cran-pkgkitten (0.2.4-1) ... 140s Selecting previously unselected package r-cran-rcpp. 140s Preparing to unpack .../174-r-cran-rcpp_1.0.13-1_arm64.deb ... 140s Unpacking r-cran-rcpp (1.0.13-1) ... 140s Selecting previously unselected package r-bioc-gosemsim. 140s Preparing to unpack .../175-r-bioc-gosemsim_2.30.2-1_arm64.deb ... 140s Unpacking r-bioc-gosemsim (2.30.2-1) ... 140s Selecting previously unselected package r-bioc-pwalign. 140s Preparing to unpack .../176-r-bioc-pwalign_1.0.0-2_arm64.deb ... 140s Unpacking r-bioc-pwalign (1.0.0-2) ... 140s Selecting previously unselected package r-cran-codetools. 140s Preparing to unpack .../177-r-cran-codetools_0.2-20-1_all.deb ... 140s Unpacking r-cran-codetools (0.2-20-1) ... 140s Selecting previously unselected package r-cran-iterators. 140s Preparing to unpack .../178-r-cran-iterators_1.0.14-1_all.deb ... 140s Unpacking r-cran-iterators (1.0.14-1) ... 140s Selecting previously unselected package r-cran-foreach. 140s Preparing to unpack .../179-r-cran-foreach_1.5.2-1_all.deb ... 140s Unpacking r-cran-foreach (1.5.2-1) ... 140s Selecting previously unselected package r-cran-doparallel. 140s Preparing to unpack .../180-r-cran-doparallel_1.0.17-1_all.deb ... 140s Unpacking r-cran-doparallel (1.0.17-1) ... 140s Selecting previously unselected package r-cran-rjson. 140s Preparing to unpack .../181-r-cran-rjson_0.2.21-1_arm64.deb ... 140s Unpacking r-cran-rjson (0.2.21-1) ... 141s Selecting previously unselected package r-bioc-rcpi. 141s Preparing to unpack .../182-r-bioc-rcpi_1.40.2+ds-1_all.deb ... 141s Unpacking r-bioc-rcpi (1.40.2+ds-1) ... 141s Selecting previously unselected package r-cran-base64enc. 141s Preparing to unpack .../183-r-cran-base64enc_0.1-3-3_arm64.deb ... 141s Unpacking r-cran-base64enc (0.1-3-3) ... 141s Selecting previously unselected package r-cran-brio. 141s Preparing to unpack .../184-r-cran-brio_1.1.5-1_arm64.deb ... 141s Unpacking r-cran-brio (1.1.5-1) ... 141s Selecting previously unselected package r-cran-htmltools. 141s Preparing to unpack .../185-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 141s Unpacking r-cran-htmltools (0.5.8.1-1) ... 141s Selecting previously unselected package r-cran-jquerylib. 141s Preparing to unpack .../186-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 141s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 141s Selecting previously unselected package r-cran-sass. 141s Preparing to unpack .../187-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 141s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 141s Selecting previously unselected package r-cran-bslib. 141s Preparing to unpack .../188-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 141s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 141s Selecting previously unselected package r-cran-ps. 141s Preparing to unpack .../189-r-cran-ps_1.8.0-1_arm64.deb ... 141s Unpacking r-cran-ps (1.8.0-1) ... 141s Selecting previously unselected package r-cran-processx. 141s Preparing to unpack .../190-r-cran-processx_3.8.4-1_arm64.deb ... 141s Unpacking r-cran-processx (3.8.4-1) ... 141s Selecting previously unselected package r-cran-callr. 142s Preparing to unpack .../191-r-cran-callr_3.7.6-1_all.deb ... 142s Unpacking r-cran-callr (3.7.6-1) ... 142s Selecting previously unselected package r-cran-commonmark. 142s Preparing to unpack .../192-r-cran-commonmark_1.9.2-1_arm64.deb ... 142s Unpacking r-cran-commonmark (1.9.2-1) ... 142s Selecting previously unselected package r-cran-desc. 142s Preparing to unpack .../193-r-cran-desc_1.4.3-1_all.deb ... 142s Unpacking r-cran-desc (1.4.3-1) ... 142s Selecting previously unselected package r-cran-diffobj. 142s Preparing to unpack .../194-r-cran-diffobj_0.3.5-1_arm64.deb ... 142s Unpacking r-cran-diffobj (0.3.5-1) ... 142s Selecting previously unselected package r-cran-evaluate. 142s Preparing to unpack .../195-r-cran-evaluate_0.24.0-1_all.deb ... 142s Unpacking r-cran-evaluate (0.24.0-1) ... 142s Selecting previously unselected package r-cran-fansi. 142s Preparing to unpack .../196-r-cran-fansi_1.0.5-1_arm64.deb ... 142s Unpacking r-cran-fansi (1.0.5-1) ... 142s Selecting previously unselected package r-cran-fontawesome. 142s Preparing to unpack .../197-r-cran-fontawesome_0.5.2-1_all.deb ... 142s Unpacking r-cran-fontawesome (0.5.2-1) ... 142s Selecting previously unselected package r-cran-xfun. 142s Preparing to unpack .../198-r-cran-xfun_0.48+dfsg-1_arm64.deb ... 142s Unpacking r-cran-xfun (0.48+dfsg-1) ... 142s Selecting previously unselected package r-cran-highr. 143s Preparing to unpack .../199-r-cran-highr_0.11+dfsg-1_all.deb ... 143s Unpacking r-cran-highr (0.11+dfsg-1) ... 143s Selecting previously unselected package r-cran-later. 143s Preparing to unpack .../200-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 143s Unpacking r-cran-later (1.3.2+dfsg-1) ... 143s Selecting previously unselected package r-cran-promises. 143s Preparing to unpack .../201-r-cran-promises_1.3.0+dfsg-1_arm64.deb ... 143s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 143s Selecting previously unselected package r-cran-httpuv. 143s Preparing to unpack .../202-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 143s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 143s Selecting previously unselected package r-cran-yaml. 143s Preparing to unpack .../203-r-cran-yaml_2.3.8-2_arm64.deb ... 143s Unpacking r-cran-yaml (2.3.8-2) ... 143s Selecting previously unselected package libjs-mathjax. 143s Preparing to unpack .../204-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 143s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 144s Selecting previously unselected package r-cran-knitr. 144s Preparing to unpack .../205-r-cran-knitr_1.47+dfsg-1_all.deb ... 144s Unpacking r-cran-knitr (1.47+dfsg-1) ... 144s Selecting previously unselected package r-cran-utf8. 144s Preparing to unpack .../206-r-cran-utf8_1.2.4-1_arm64.deb ... 144s Unpacking r-cran-utf8 (1.2.4-1) ... 144s Selecting previously unselected package r-cran-pillar. 144s Preparing to unpack .../207-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 144s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 144s Selecting previously unselected package r-cran-pkgbuild. 144s Preparing to unpack .../208-r-cran-pkgbuild_1.4.4-1_all.deb ... 144s Unpacking r-cran-pkgbuild (1.4.4-1) ... 144s Selecting previously unselected package r-cran-rprojroot. 144s Preparing to unpack .../209-r-cran-rprojroot_2.0.4-1_all.deb ... 144s Unpacking r-cran-rprojroot (2.0.4-1) ... 144s Selecting previously unselected package r-cran-pkgload. 144s Preparing to unpack .../210-r-cran-pkgload_1.4.0-1_all.deb ... 144s Unpacking r-cran-pkgload (1.4.0-1) ... 144s Selecting previously unselected package r-cran-praise. 145s Preparing to unpack .../211-r-cran-praise_1.0.0-4build1_all.deb ... 145s Unpacking r-cran-praise (1.0.0-4build1) ... 145s Selecting previously unselected package r-cran-tibble. 145s Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 145s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 145s Selecting previously unselected package r-cran-rematch2. 145s Preparing to unpack .../213-r-cran-rematch2_2.1.2-2build1_all.deb ... 145s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 145s Selecting previously unselected package r-cran-tinytex. 145s Preparing to unpack .../214-r-cran-tinytex_0.51-1_all.deb ... 145s Unpacking r-cran-tinytex (0.51-1) ... 145s Selecting previously unselected package libjs-modernizr. 145s Preparing to unpack .../215-libjs-modernizr_3.13.0-0.1_all.deb ... 145s Unpacking libjs-modernizr (3.13.0-0.1) ... 145s Selecting previously unselected package r-cran-xtable. 145s Preparing to unpack .../216-r-cran-xtable_1%3a1.8-4-2_all.deb ... 145s Unpacking r-cran-xtable (1:1.8-4-2) ... 145s Selecting previously unselected package r-cran-sourcetools. 145s Preparing to unpack .../217-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 145s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 145s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 145s Preparing to unpack .../218-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 145s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 145s Selecting previously unselected package r-cran-shiny. 145s Preparing to unpack .../219-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 145s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 145s Selecting previously unselected package r-cran-rmarkdown. 145s Preparing to unpack .../220-r-cran-rmarkdown_2.27+dfsg-1_all.deb ... 145s Unpacking r-cran-rmarkdown (2.27+dfsg-1) ... 145s Selecting previously unselected package r-cran-waldo. 146s Preparing to unpack .../221-r-cran-waldo_0.5.2-1build1_all.deb ... 146s Unpacking r-cran-waldo (0.5.2-1build1) ... 146s Selecting previously unselected package r-cran-testthat. 146s Preparing to unpack .../222-r-cran-testthat_3.2.1.1-1_arm64.deb ... 146s Unpacking r-cran-testthat (3.2.1.1-1) ... 146s Selecting previously unselected package autopkgtest-satdep. 146s Preparing to unpack .../223-1-autopkgtest-satdep.deb ... 146s Unpacking autopkgtest-satdep (0) ... 146s Setting up libjs-json (0~20221030+~1.0.8-1) ... 146s Setting up javascript-common (11+nmu1) ... 146s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 146s Setting up libpixman-1-0:arm64 (0.42.2-1build1) ... 146s Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... 146s Setting up libpaper1:arm64 (1.1.29build1) ... 146s 146s Creating config file /etc/papersize with new version 146s Setting up libncurses-dev:arm64 (6.5-2) ... 146s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 146s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu2) ... 146s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 146s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 146s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 146s Setting up libjs-popper.js (1.16.1+ds-6) ... 146s Setting up libxcb-render0:arm64 (1.17.0-2) ... 146s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 146s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 146s Setting up unzip (6.0-28ubuntu6) ... 146s Setting up x11-common (1:7.7+23ubuntu3) ... 147s Setting up node-html5shiv (3.7.3+dfsg-5) ... 147s Setting up libdeflate0:arm64 (1.21-1) ... 147s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 147s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 147s Setting up libpaper-utils (1.1.29build1) ... 147s Setting up libreadline-dev:arm64 (8.2-5) ... 147s Setting up libgomp1:arm64 (14.2.0-7ubuntu1) ... 147s Setting up libjs-modernizr (3.13.0-0.1) ... 147s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 147s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu3) ... 147s Setting up libjs-es5-shim (4.6.7-2) ... 147s Setting up zip (3.0-14) ... 147s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu3) ... 147s Setting up libblas3:arm64 (3.12.0-3build2) ... 147s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 147s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 147s Setting up libpkgconf3:arm64 (1.8.1-3ubuntu1) ... 147s Setting up libjs-d3 (3.5.17-4) ... 147s Setting up fonts-dejavu-mono (2.37-8) ... 147s Setting up libmpc3:arm64 (1.3.1-1build2) ... 147s Setting up libtcl8.6:arm64 (8.6.14+dfsg-1build1) ... 147s Setting up icu-devtools (74.2-1ubuntu4) ... 147s Setting up fonts-dejavu-core (2.37-8) ... 147s Setting up pkgconf-bin (1.8.1-3ubuntu1) ... 147s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 147s Setting up libgfortran5:arm64 (14.2.0-7ubuntu1) ... 147s Setting up libwebp7:arm64 (1.4.0-0.1) ... 147s Setting up liblzma-dev:arm64 (5.6.2-2) ... 147s Setting up libubsan1:arm64 (14.2.0-7ubuntu1) ... 147s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 147s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu3) ... 147s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 147s Setting up libhwasan0:arm64 (14.2.0-7ubuntu1) ... 147s Setting up libasan8:arm64 (14.2.0-7ubuntu1) ... 147s Setting up liblua5.4-0:arm64 (5.4.6-3build2) ... 147s Setting up libharfbuzz0b:arm64 (9.0.0-1) ... 147s Setting up libthai-data (0.1.29-2build1) ... 147s Setting up node-bootstrap-sass (3.4.3-2) ... 147s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 147s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 147s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 147s Setting up pandoc-data (3.1.11.1-3) ... 147s Setting up libtsan2:arm64 (14.2.0-7ubuntu1) ... 147s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 147s Setting up libisl23:arm64 (0.27-1) ... 147s Setting up libdeflate-dev:arm64 (1.21-1) ... 147s Setting up node-normalize.css (8.0.1-5) ... 147s Setting up libicu-dev:arm64 (74.2-1ubuntu4) ... 147s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 147s Setting up xdg-utils (1.2.1-0ubuntu1) ... 147s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 147s Setting up libcc1-0:arm64 (14.2.0-7ubuntu1) ... 147s Setting up liblsan0:arm64 (14.2.0-7ubuntu1) ... 147s Setting up libblas-dev:arm64 (3.12.0-3build2) ... 147s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 147s Setting up dctrl-tools (2.24-3build3) ... 147s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 147s Setting up libitm1:arm64 (14.2.0-7ubuntu1) ... 147s Setting up libbz2-dev:arm64 (1.0.8-6) ... 147s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 147s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 147s Setting up libice6:arm64 (2:1.0.10-1build3) ... 147s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 147s Setting up liblapack3:arm64 (3.12.0-3build2) ... 147s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 147s Setting up libpcre2-dev:arm64 (10.42-4ubuntu3) ... 147s Setting up 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/usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 150s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 150s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 150s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 150s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 150s Setting up r-cran-httr2 (1.0.5-1) ... 150s Setting up r-cran-httr (1.4.7+dfsg-1) ... 150s Setting up r-cran-memoise (2.0.1-1) ... 150s Setting up r-cran-promises (1.3.0+dfsg-1) ... 150s Setting up r-cran-blob (1.2.4-1) ... 150s Setting up r-bioc-xvector (0.44.0-1) ... 150s Setting up r-cran-pkgbuild (1.4.4-1) ... 150s Setting up r-cran-rsqlite (2.3.7-2) ... 150s Setting up r-cran-pkgload (1.4.0-1) ... 150s Setting up r-cran-r.utils (2.12.3-1) ... 150s Setting up r-base-dev (4.4.1-1) ... 150s Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... 150s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 150s Setting up r-cran-rematch2 (2.1.2-2build1) ... 150s Setting up r-cran-yulab.utils (0.1.4-1) ... 150s Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... 150s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 150s Setting up r-cran-waldo (0.5.2-1build1) ... 150s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 150s Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... 150s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 150s Setting up r-cran-testthat (3.2.1.1-1) ... 150s Setting up r-cran-rmarkdown (2.27+dfsg-1) ... 150s Setting up r-bioc-pwalign (1.0.0-2) ... 150s Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... 150s Setting up r-bioc-annotationdbi (1.66.0-1) ... 150s Setting up r-bioc-go.db (3.19.1-1) ... 150s Setting up r-bioc-gosemsim (2.30.2-1) ... 150s Setting up r-bioc-rcpi (1.40.2+ds-1) ... 150s Setting up autopkgtest-satdep (0) ... 150s Processing triggers for man-db (2.12.1-3) ... 152s Processing triggers for install-info (7.1.1-1) ... 152s Processing triggers for libc-bin (2.40-1ubuntu3) ... 172s (Reading database ... 99764 files and directories currently installed.) 172s Removing autopkgtest-satdep (0) ... 172s autopkgtest [22:01:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 172s autopkgtest [22:01:30]: test pkg-r-autopkgtest: [----------------------- 173s Test: Try to load the R library Rcpi 173s 173s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 173s Copyright (C) 2024 The R Foundation for Statistical Computing 173s Platform: aarch64-unknown-linux-gnu 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > library('Rcpi') 177s 177s > 177s > 177s Other tests are currently unsupported! 177s They will be progressively added. 178s autopkgtest [22:01:36]: test pkg-r-autopkgtest: -----------------------] 178s autopkgtest [22:01:36]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 178s pkg-r-autopkgtest PASS 179s autopkgtest [22:01:37]: @@@@@@@@@@@@@@@@@@@@ summary 179s pkg-r-autopkgtest PASS 194s nova [W] Skipping flock in bos03-arm64 194s Creating nova instance adt-plucky-arm64-r-bioc-rcpi-20241101-215838-juju-7f2275-prod-proposed-migration-environment-15-ce0bf5d0-b163-4d30-bce4-06c6c91625bc from image adt/ubuntu-plucky-arm64-server-20241101.img (UUID 520a937f-514a-4e80-b76b-163a8c247e3e)...