0s autopkgtest [15:09:09]: starting date and time: 2025-03-15 15:09:09+0000 0s autopkgtest [15:09:09]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:09:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jwn31v2_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-rbgl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-28.secgroup --name adt-plucky-arm64-r-bioc-rbgl-20250315-150909-juju-7f2275-prod-proposed-migration-environment-2-d1216364-0a27-46d0-a662-2e922cc96401 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 176s autopkgtest [15:12:05]: testbed dpkg architecture: arm64 176s autopkgtest [15:12:05]: testbed apt version: 2.9.33 177s autopkgtest [15:12:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 177s autopkgtest [15:12:06]: testbed release detected to be: None 178s autopkgtest [15:12:07]: updating testbed package index (apt update) 178s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 178s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 179s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 179s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 179s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 179s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 179s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 179s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 179s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 180s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 180s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 180s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 180s Fetched 1094 kB in 2s (693 kB/s) 181s Reading package lists... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s Calculating upgrade... 184s Calculating upgrade... 185s The following packages will be upgraded: 185s python3-jinja2 strace 185s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 608 kB of archives. 185s After this operation, 11.3 kB of additional disk space will be used. 185s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 186s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 187s Fetched 608 kB in 1s (497 kB/s) 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 187s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 187s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 187s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 187s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 187s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 188s Setting up strace (6.13+ds-1ubuntu1) ... 188s Processing triggers for man-db (2.13.0-1) ... 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Solving dependencies... 189s The following packages will be REMOVED: 189s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 189s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 189s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 189s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 190s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 190s After this operation, 267 MB disk space will be freed. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 190s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 190s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 190s Removing libpython3.12t64:arm64 (3.12.9-1) ... 190s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 190s Removing libnsl2:arm64 (1.3.0-3build3) ... 190s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 190s Removing libunwind8:arm64 (1.6.2-3.1) ... 190s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 191s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 193s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 193s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 193s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 193s /etc/kernel/postrm.d/initramfs-tools: 193s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 193s /etc/kernel/postrm.d/zz-flash-kernel: 193s flash-kernel: Kernel 6.11.0-8-generic has been removed. 193s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 193s /etc/kernel/postrm.d/zz-update-grub: 193s Sourcing file `/etc/default/grub' 193s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 193s Generating grub configuration file ... 193s Found linux image: /boot/vmlinuz-6.14.0-10-generic 193s Found initrd image: /boot/initrd.img-6.14.0-10-generic 194s Warning: os-prober will not be executed to detect other bootable partitions. 194s Systems on them will not be added to the GRUB boot configuration. 194s Check GRUB_DISABLE_OS_PROBER documentation entry. 194s Adding boot menu entry for UEFI Firmware Settings ... 194s done 194s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 194s Processing triggers for libc-bin (2.41-1ubuntu1) ... 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 194s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 194s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 195s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 195s autopkgtest [15:12:24]: upgrading testbed (apt dist-upgrade and autopurge) 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s Entering ResolveByKeep 198s 198s Calculating upgrade... 199s The following packages will be upgraded: 199s libc-bin libc-dev-bin libc6 libc6-dev locales 199s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 9530 kB of archives. 199s After this operation, 0 B of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 201s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 204s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 204s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 208s Preconfiguring packages ... 209s Fetched 9530 kB in 9s (1061 kB/s) 209s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 209s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 209s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 209s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc6:arm64 (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 210s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up libc-bin (2.41-1ubuntu2) ... 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 210s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 210s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 210s Setting up locales (2.41-1ubuntu2) ... 212s Generating locales (this might take a while)... 214s en_US.UTF-8... done 214s Generation complete. 214s Setting up libc-dev-bin (2.41-1ubuntu2) ... 214s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 214s Processing triggers for man-db (2.13.0-1) ... 215s Processing triggers for systemd (257.3-1ubuntu3) ... 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 218s Starting pkgProblemResolver with broken count: 0 218s Starting 2 pkgProblemResolver with broken count: 0 218s Done 219s Solving dependencies... 220s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 220s autopkgtest [15:12:49]: rebooting testbed after setup commands that affected boot 242s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 250s autopkgtest [15:13:19]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 252s autopkgtest [15:13:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rbgl 255s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rbgl 1.82.0+dfsg-2 (dsc) [2124 B] 255s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rbgl 1.82.0+dfsg-2 (tar) [126 kB] 255s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-rbgl 1.82.0+dfsg-2 (diff) [7496 B] 255s gpgv: Signature made Sun Jan 12 02:56:58 2025 UTC 255s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 255s gpgv: issuer "crusoe@debian.org" 255s gpgv: Can't check signature: No public key 255s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rbgl_1.82.0+dfsg-2.dsc: no acceptable signature found 255s autopkgtest [15:13:24]: testing package r-bioc-rbgl version 1.82.0+dfsg-2 256s autopkgtest [15:13:25]: build not needed 257s autopkgtest [15:13:26]: test pkg-r-autopkgtest: preparing testbed 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 258s Starting pkgProblemResolver with broken count: 0 259s Starting 2 pkgProblemResolver with broken count: 0 259s Done 259s The following NEW packages will be installed: 259s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 259s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 259s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 259s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 259s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 259s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 259s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 259s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 259s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 259s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 259s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 259s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 259s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 259s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 259s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 259s libjs-popper.js libjs-prettify libjs-sifter.js 259s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 259s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 259s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 259s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 259s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 259s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 259s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 259s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 259s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 259s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 259s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 259s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-graph 259s r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown 259s r-cran-bslib r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon 259s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 259s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 259s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler 259s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises 259s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown 259s r-cran-runit r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-tinytex 259s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml t1utils 259s tex-common texlive-base texlive-bibtex-extra texlive-binaries 259s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 260s 0 upgraded, 200 newly installed, 0 to remove and 0 not upgraded. 260s Need to get 328 MB of archives. 260s After this operation, 1191 MB of additional disk space will be used. 260s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 260s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 260s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 269s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 269s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 269s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 269s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 269s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 269s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 269s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 272s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 273s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 275s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 276s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 278s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 280s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 298s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 299s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 299s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 299s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 301s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 311s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 311s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 311s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 311s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 311s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 311s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 311s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 312s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 312s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 312s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 312s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 313s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 313s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 316s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 318s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 319s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 319s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 328s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 328s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 329s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 329s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 329s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 329s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 329s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 329s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 329s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 329s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 330s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 339s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 339s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 339s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 339s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 339s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 339s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 339s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 340s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 340s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 340s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 340s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 340s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 341s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 341s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 341s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 353s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 353s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 353s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 353s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 353s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 354s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 354s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 354s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 355s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 355s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 355s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 356s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 356s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 356s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 356s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 356s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 356s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 357s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 357s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 357s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 357s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 357s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 360s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 364s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 364s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 364s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 364s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 365s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 365s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 365s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 365s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 365s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 365s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 366s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 366s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 366s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 366s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 366s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 367s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 367s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 368s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 368s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 368s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 368s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 368s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 369s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 369s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 369s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 370s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 370s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 370s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 370s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 370s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 371s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 371s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 371s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 371s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 372s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 372s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 372s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 372s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 372s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 372s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 372s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 373s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 373s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 400s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 400s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 400s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 401s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 401s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 401s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 401s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 423s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 423s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 423s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 423s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 424s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 424s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 424s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 424s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 424s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 425s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 425s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 426s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 426s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 427s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 427s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 427s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 427s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 431s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 432s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 432s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 432s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 432s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 433s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 434s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 434s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 434s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 434s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 434s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 434s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 434s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 435s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 438s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 439s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 439s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 439s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 439s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 441s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 441s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 441s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 441s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 442s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 442s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 442s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 443s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 443s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 443s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 443s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 445s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 446s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 447s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 447s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 447s Get:189 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 447s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 454s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 468s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 469s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 526s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 526s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 527s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-graph arm64 1.84.1-1 [1297 kB] 528s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 528s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rbgl arm64 1.82.0+dfsg-2 [562 kB] 529s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 529s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 531s Preconfiguring packages ... 531s Fetched 328 MB in 4min 31s (1210 kB/s) 531s Selecting previously unselected package libisl23:arm64. 531s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 531s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 531s Unpacking libisl23:arm64 (0.27-1) ... 532s Selecting previously unselected package libmpc3:arm64. 532s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 532s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 532s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 532s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 532s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 532s Selecting previously unselected package cpp-14. 532s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 532s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 532s Selecting previously unselected package cpp-aarch64-linux-gnu. 532s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 532s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 532s Selecting previously unselected package cpp. 532s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 532s Unpacking cpp (4:14.2.0-1ubuntu1) ... 532s Selecting previously unselected package libcc1-0:arm64. 532s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 532s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 532s Selecting previously unselected package libgomp1:arm64. 532s Preparing to unpack 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.../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 532s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 532s Selecting previously unselected package libhwasan0:arm64. 533s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 533s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 533s Selecting previously unselected package libgcc-14-dev:arm64. 533s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 533s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 533s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 533s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 533s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 533s Selecting previously unselected package gcc-14. 533s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 533s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 533s Selecting previously unselected package gcc-aarch64-linux-gnu. 533s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 533s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 533s Selecting previously unselected package gcc. 533s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 533s Unpacking gcc (4:14.2.0-1ubuntu1) ... 533s Selecting previously unselected package libstdc++-14-dev:arm64. 533s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 533s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 534s Selecting previously unselected package g++-14-aarch64-linux-gnu. 534s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 534s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 534s Selecting previously unselected package g++-14. 534s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 534s Unpacking g++-14 (14.2.0-17ubuntu3) ... 534s Selecting previously unselected package g++-aarch64-linux-gnu. 534s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 534s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 534s Selecting previously unselected package g++. 534s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 534s Unpacking g++ (4:14.2.0-1ubuntu1) ... 534s Selecting previously unselected package build-essential. 534s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 534s Unpacking build-essential (12.10ubuntu1) ... 534s Selecting previously unselected package dctrl-tools. 534s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 534s Unpacking dctrl-tools (2.24-3build3) ... 534s Selecting previously unselected package fonts-dejavu-mono. 534s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-mono (2.37-8) ... 534s Selecting previously unselected package fonts-dejavu-core. 534s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-core (2.37-8) ... 535s Selecting previously unselected package fontconfig-config. 535s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 535s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 535s Selecting previously unselected package libfontconfig1:arm64. 535s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 535s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 535s Selecting previously unselected package fontconfig. 535s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 535s Unpacking fontconfig (2.15.0-2ubuntu1) ... 535s Selecting previously unselected package fonts-font-awesome. 535s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 535s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 535s Selecting previously unselected package fonts-glyphicons-halflings. 535s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 535s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 535s Selecting previously unselected package fonts-lmodern. 535s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 535s Unpacking fonts-lmodern (2.005-1) ... 535s Selecting previously unselected package fonts-mathjax. 535s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 535s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 535s Selecting previously unselected package libgfortran5:arm64. 535s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 535s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 535s Selecting previously unselected package libgfortran-14-dev:arm64. 536s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 536s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 536s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 536s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 536s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 536s Selecting previously unselected package gfortran-14. 536s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 536s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 536s Selecting previously unselected package gfortran-aarch64-linux-gnu. 536s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 536s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 536s Selecting previously unselected package gfortran. 536s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 536s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 536s Selecting previously unselected package icu-devtools. 536s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 536s Unpacking icu-devtools (76.1-1ubuntu2) ... 536s Selecting previously unselected package javascript-common. 536s Preparing to unpack .../042-javascript-common_12_all.deb ... 536s Unpacking javascript-common (12) ... 536s Selecting previously unselected package libio-string-perl. 536s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 536s Unpacking libio-string-perl (1.08-4) ... 536s Selecting previously unselected package liblatex-tounicode-perl. 536s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 536s Unpacking liblatex-tounicode-perl (0.55-1) ... 536s Selecting previously unselected package libbibtex-parser-perl. 536s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 536s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 536s Selecting previously unselected package libblas3:arm64. 536s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 536s Unpacking libblas3:arm64 (3.12.1-2) ... 536s Selecting previously unselected package libblas-dev:arm64. 536s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 536s Unpacking libblas-dev:arm64 (3.12.1-2) ... 536s Selecting previously unselected package libboost1.83-dev:arm64. 536s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 536s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 538s Selecting previously unselected package libboost-dev:arm64. 538s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 538s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 538s Selecting previously unselected package libbz2-dev:arm64. 538s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 538s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 539s Selecting previously unselected package libpixman-1-0:arm64. 539s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 539s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 539s Selecting previously unselected package libxcb-render0:arm64. 539s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 539s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 539s Selecting previously unselected package libxcb-shm0:arm64. 539s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 539s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 539s Selecting previously unselected package libxrender1:arm64. 539s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 539s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 539s Selecting previously unselected package libcairo2:arm64. 539s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 539s Unpacking libcairo2:arm64 (1.18.2-2) ... 539s Selecting previously unselected package libdatrie1:arm64. 539s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 539s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 539s Selecting previously unselected package libdeflate0:arm64. 539s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 539s Unpacking libdeflate0:arm64 (1.23-1) ... 539s Selecting previously unselected package libdeflate-dev:arm64. 539s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 539s Unpacking libdeflate-dev:arm64 (1.23-1) ... 539s Selecting previously unselected package libgraphite2-3:arm64. 539s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 539s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 539s Selecting previously unselected package libharfbuzz0b:arm64. 539s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 539s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 539s Selecting previously unselected package x11-common. 539s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 539s Unpacking x11-common (1:7.7+23ubuntu3) ... 539s Selecting previously unselected package libice6:arm64. 539s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 539s Unpacking libice6:arm64 (2:1.1.1-1) ... 539s Selecting previously unselected package libicu-dev:arm64. 539s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 539s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 540s Selecting previously unselected package libjpeg-turbo8:arm64. 540s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 540s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 540s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 540s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 540s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 540s Selecting previously unselected package libjpeg8:arm64. 540s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 540s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 540s Selecting previously unselected package libjpeg8-dev:arm64. 540s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 540s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 540s Selecting previously unselected package libjpeg-dev:arm64. 540s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 540s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 540s Selecting previously unselected package libjs-bootstrap. 540s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 540s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 540s Selecting previously unselected package libjs-popper.js. 540s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 540s Unpacking libjs-popper.js (1.16.1+ds-6) ... 540s Selecting previously unselected package libjs-bootstrap4. 540s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 540s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 540s Selecting previously unselected package libjs-d3. 540s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 540s Unpacking libjs-d3 (3.5.17-4) ... 540s Selecting previously unselected package libjs-es5-shim. 540s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 540s Unpacking libjs-es5-shim (4.6.7-2) ... 540s Selecting previously unselected package libjs-highlight.js. 540s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 540s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 540s Selecting previously unselected package libjs-jquery. 540s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 540s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 540s Selecting previously unselected package libjs-jquery-datatables. 540s Preparing to unpack .../076-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 540s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 540s Selecting previously unselected package libjs-sifter.js. 540s Preparing to unpack .../077-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 540s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 541s Selecting previously unselected package libjs-microplugin.js. 541s Preparing to unpack .../078-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 541s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 541s Selecting previously unselected package libjs-jquery-selectize.js. 541s Preparing to unpack .../079-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2024.20240313.70630+ds-5build2) ... 541s Selecting previously unselected package liblapack3:arm64. 541s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 541s Unpacking liblapack3:arm64 (3.12.1-2) ... 541s Selecting previously unselected package liblapack-dev:arm64. 541s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 541s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 541s Selecting previously unselected package liblerc4:arm64. 541s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 541s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 541s Selecting previously unselected package liblua5.4-0:arm64. 541s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 541s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 541s Selecting previously unselected package libmpfi0:arm64. 541s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 541s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 541s Selecting previously unselected package libncurses-dev:arm64. 541s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 541s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 542s Selecting previously unselected package libthai-data. 542s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 542s Unpacking libthai-data (0.1.29-2build1) ... 542s Selecting previously unselected package libthai0:arm64. 542s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 542s Unpacking libthai0:arm64 (0.1.29-2build1) ... 542s Selecting previously unselected package libpango-1.0-0:arm64. 542s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 542s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 542s Selecting previously unselected package libpangoft2-1.0-0:arm64. 542s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 542s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 542s Selecting previously unselected package libpangocairo-1.0-0:arm64. 542s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 542s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 542s Selecting previously unselected package libpaper2:arm64. 542s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 542s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 542s Selecting previously unselected package libpaper-utils. 542s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 542s Unpacking libpaper-utils (2.2.5-0.3) ... 542s Selecting previously unselected package libpcre2-16-0:arm64. 542s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 542s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 542s Selecting previously unselected package libpcre2-32-0:arm64. 542s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 542s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 542s Selecting previously unselected package libpcre2-posix3:arm64. 542s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 542s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 542s Selecting previously unselected package libpcre2-dev:arm64. 542s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 542s Unpacking libpcre2-dev:arm64 (10.45-1) ... 542s Selecting previously unselected package libpkgconf3:arm64. 542s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 542s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 542s Selecting previously unselected package zlib1g-dev:arm64. 542s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 542s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 542s Selecting previously unselected package libpng-dev:arm64. 542s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 542s Unpacking libpng-dev:arm64 (1.6.47-1) ... 542s Selecting previously unselected package libpotrace0:arm64. 542s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 542s Unpacking libpotrace0:arm64 (1.16-2build1) ... 542s Selecting previously unselected package libptexenc1:arm64. 542s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 542s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 542s Selecting previously unselected package libreadline-dev:arm64. 542s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 542s Unpacking libreadline-dev:arm64 (8.2-6) ... 542s Selecting previously unselected package libsharpyuv0:arm64. 543s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 543s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 543s Selecting previously unselected package libsm6:arm64. 543s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 543s Unpacking libsm6:arm64 (2:1.2.4-1) ... 543s Selecting previously unselected package libsynctex2:arm64. 543s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 543s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 543s Selecting previously unselected package libtcl8.6:arm64. 543s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 543s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 543s Selecting previously unselected package libteckit0:arm64. 543s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 543s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 543s Selecting previously unselected package libtexlua53-5:arm64. 543s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 543s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 543s Selecting previously unselected package libjbig0:arm64. 543s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 543s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 543s Selecting previously unselected package libwebp7:arm64. 543s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 543s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 543s Selecting previously unselected package libtiff6:arm64. 543s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 543s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 543s Selecting previously unselected package libxft2:arm64. 543s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 543s Unpacking libxft2:arm64 (2.3.6-1build1) ... 543s Selecting previously unselected package libxss1:arm64. 543s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 543s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 543s Selecting previously unselected package libtk8.6:arm64. 543s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 543s Unpacking libtk8.6:arm64 (8.6.16-1) ... 543s Selecting previously unselected package libxt6t64:arm64. 543s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 543s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 543s Selecting previously unselected package libxmu6:arm64. 543s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 543s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 543s Selecting previously unselected package libxpm4:arm64. 543s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 543s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 543s Selecting previously unselected package libxaw7:arm64. 543s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 543s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 544s Selecting previously unselected package libxi6:arm64. 544s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 544s Unpacking libxi6:arm64 (2:1.8.2-1) ... 544s Selecting previously unselected package libzzip-0-13t64:arm64. 544s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 544s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 544s Selecting previously unselected package zip. 544s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 544s Unpacking zip (3.0-14ubuntu2) ... 544s Selecting previously unselected package unzip. 544s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 544s Unpacking unzip (6.0-28ubuntu6) ... 544s Selecting previously unselected package xdg-utils. 544s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 544s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 544s Selecting previously unselected package r-base-core. 544s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 544s Unpacking r-base-core (4.4.3-1) ... 544s Selecting previously unselected package r-cran-littler. 544s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 544s Unpacking r-cran-littler (0.3.20-2) ... 544s Selecting previously unselected package littler. 544s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 544s Unpacking littler (0.3.20-2) ... 544s Selecting previously unselected package node-bootstrap-sass. 545s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 545s Unpacking node-bootstrap-sass (3.4.3-2) ... 545s Selecting previously unselected package node-html5shiv. 545s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 545s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 545s Selecting previously unselected package node-normalize.css. 545s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 545s Unpacking node-normalize.css (8.0.1-5) ... 545s Selecting previously unselected package pandoc-data. 545s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 545s Unpacking pandoc-data (3.1.11.1-3build1) ... 545s Selecting previously unselected package pandoc. 545s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 545s Unpacking pandoc (3.1.11.1+ds-2) ... 546s Selecting previously unselected package liblzma-dev:arm64. 546s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 546s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 546s Selecting previously unselected package pkgconf-bin. 546s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 546s Unpacking pkgconf-bin (1.8.1-4) ... 546s Selecting previously unselected package pkgconf:arm64. 546s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 546s Unpacking pkgconf:arm64 (1.8.1-4) ... 546s Selecting previously unselected package libtirpc-dev:arm64. 546s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 546s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 546s Selecting previously unselected package r-base-dev. 546s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 546s Unpacking r-base-dev (4.4.3-1) ... 546s Selecting previously unselected package pkg-r-autopkgtest. 546s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 546s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 546s Selecting previously unselected package r-bioc-biocgenerics. 546s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 546s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 546s Selecting previously unselected package r-cran-base64enc. 546s Preparing to unpack .../144-r-cran-base64enc_0.1-3-3_arm64.deb ... 546s Unpacking r-cran-base64enc (0.1-3-3) ... 546s Selecting previously unselected package r-cran-digest. 546s Preparing to unpack .../145-r-cran-digest_0.6.37-1_arm64.deb ... 546s Unpacking r-cran-digest (0.6.37-1) ... 546s Selecting previously unselected package r-cran-fastmap. 547s Preparing to unpack .../146-r-cran-fastmap_1.2.0-1_arm64.deb ... 547s Unpacking r-cran-fastmap (1.2.0-1) ... 547s Selecting previously unselected package r-cran-rlang. 547s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_arm64.deb ... 547s Unpacking r-cran-rlang (1.1.5-1) ... 547s Selecting previously unselected package r-cran-htmltools. 547s Preparing to unpack .../148-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 547s Unpacking r-cran-htmltools (0.5.8.1-1) ... 547s Selecting previously unselected package r-cran-evaluate. 547s Preparing to unpack .../149-r-cran-evaluate_1.0.3-1_all.deb ... 547s Unpacking r-cran-evaluate (1.0.3-1) ... 547s Selecting previously unselected package r-cran-xfun. 547s Preparing to unpack .../150-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 547s Unpacking r-cran-xfun (0.51+dfsg-1) ... 547s Selecting previously unselected package r-cran-highr. 547s Preparing to unpack .../151-r-cran-highr_0.11+dfsg-1_all.deb ... 547s Unpacking r-cran-highr (0.11+dfsg-1) ... 547s Selecting previously unselected package r-cran-yaml. 547s Preparing to unpack .../152-r-cran-yaml_2.3.10-1_arm64.deb ... 547s Unpacking r-cran-yaml (2.3.10-1) ... 547s Selecting previously unselected package libjs-mathjax. 547s Preparing to unpack .../153-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 547s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 548s Selecting previously unselected package r-cran-knitr. 548s Preparing to unpack .../154-r-cran-knitr_1.49+dfsg-1_all.deb ... 548s Unpacking r-cran-knitr (1.49+dfsg-1) ... 548s Selecting previously unselected package r-cran-cachem. 548s Preparing to unpack .../155-r-cran-cachem_1.1.0-1_arm64.deb ... 548s Unpacking r-cran-cachem (1.1.0-1) ... 548s Selecting previously unselected package r-cran-jquerylib. 548s Preparing to unpack .../156-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 548s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 548s Selecting previously unselected package r-cran-jsonlite. 548s Preparing to unpack .../157-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 548s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 548s Selecting previously unselected package r-cran-cli. 548s Preparing to unpack .../158-r-cran-cli_3.6.4-1_arm64.deb ... 548s Unpacking r-cran-cli (3.6.4-1) ... 548s Selecting previously unselected package r-cran-glue. 548s Preparing to unpack .../159-r-cran-glue_1.8.0-1_arm64.deb ... 548s Unpacking r-cran-glue (1.8.0-1) ... 548s Selecting previously unselected package r-cran-lifecycle. 548s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 548s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 548s Selecting previously unselected package r-cran-memoise. 548s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 548s Unpacking r-cran-memoise (2.0.1-1) ... 548s Selecting previously unselected package r-cran-mime. 548s Preparing to unpack .../162-r-cran-mime_0.12-2_arm64.deb ... 548s Unpacking r-cran-mime (0.12-2) ... 548s Selecting previously unselected package r-cran-fs. 548s Preparing to unpack .../163-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 548s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 548s Selecting previously unselected package r-cran-r6. 548s Preparing to unpack .../164-r-cran-r6_2.6.1-1_all.deb ... 548s Unpacking r-cran-r6 (2.6.1-1) ... 548s Selecting previously unselected package r-cran-rappdirs. 548s Preparing to unpack .../165-r-cran-rappdirs_0.3.3-1_arm64.deb ... 548s Unpacking r-cran-rappdirs (0.3.3-1) ... 548s Selecting previously unselected package r-cran-sass. 548s Preparing to unpack .../166-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 548s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 549s Selecting previously unselected package r-cran-bslib. 549s Preparing to unpack .../167-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 549s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 549s Selecting previously unselected package r-cran-fontawesome. 549s Preparing to unpack .../168-r-cran-fontawesome_0.5.3-1_all.deb ... 549s Unpacking r-cran-fontawesome (0.5.3-1) ... 549s Selecting previously unselected package r-cran-tinytex. 549s Preparing to unpack .../169-r-cran-tinytex_0.56-1_all.deb ... 549s Unpacking r-cran-tinytex (0.56-1) ... 549s Selecting previously unselected package libjs-modernizr. 549s Preparing to unpack .../170-libjs-modernizr_3.13.0-0.1_all.deb ... 549s Unpacking libjs-modernizr (3.13.0-0.1) ... 549s Selecting previously unselected package r-cran-pkgkitten. 549s Preparing to unpack .../171-r-cran-pkgkitten_0.2.4-1_all.deb ... 549s Unpacking r-cran-pkgkitten (0.2.4-1) ... 549s Selecting previously unselected package r-cran-rcpp. 549s Preparing to unpack .../172-r-cran-rcpp_1.0.14-1_arm64.deb ... 549s Unpacking r-cran-rcpp (1.0.14-1) ... 549s Selecting previously unselected package r-cran-later. 549s Preparing to unpack .../173-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 549s Unpacking r-cran-later (1.4.1+dfsg-1) ... 549s Selecting previously unselected package r-cran-magrittr. 549s Preparing to unpack .../174-r-cran-magrittr_2.0.3-1_arm64.deb ... 549s Unpacking r-cran-magrittr (2.0.3-1) ... 549s Selecting previously unselected package r-cran-promises. 549s Preparing to unpack .../175-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 549s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 549s Selecting previously unselected package r-cran-httpuv. 549s Preparing to unpack .../176-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 549s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 549s Selecting previously unselected package r-cran-xtable. 549s Preparing to unpack .../177-r-cran-xtable_1%3a1.8-4-2_all.deb ... 549s Unpacking r-cran-xtable (1:1.8-4-2) ... 550s Selecting previously unselected package r-cran-sourcetools. 550s Preparing to unpack .../178-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 550s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 550s Selecting previously unselected package r-cran-crayon. 550s Preparing to unpack .../179-r-cran-crayon_1.5.3-1_all.deb ... 550s Unpacking r-cran-crayon (1.5.3-1) ... 550s Selecting previously unselected package r-cran-withr. 550s Preparing to unpack .../180-r-cran-withr_3.0.2+dfsg-1_all.deb ... 550s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 550s Selecting previously unselected package r-cran-commonmark. 550s Preparing to unpack .../181-r-cran-commonmark_1.9.2-2_arm64.deb ... 550s Unpacking r-cran-commonmark (1.9.2-2) ... 550s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 550s Preparing to unpack .../182-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 550s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 550s Selecting previously unselected package r-cran-shiny. 550s Preparing to unpack .../183-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 550s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 550s Selecting previously unselected package r-cran-rmarkdown. 550s Preparing to unpack .../184-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 550s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 550s Selecting previously unselected package r-cran-bookdown. 550s Preparing to unpack .../185-r-cran-bookdown_0.42+dfsg-1_all.deb ... 550s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 550s Selecting previously unselected package r-cran-biocmanager. 550s Preparing to unpack .../186-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 550s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 550s Selecting previously unselected package tex-common. 550s Preparing to unpack .../187-tex-common_6.19_all.deb ... 550s Unpacking tex-common (6.19) ... 550s Selecting previously unselected package t1utils. 550s Preparing to unpack .../188-t1utils_1.41-4build3_arm64.deb ... 550s Unpacking t1utils (1.41-4build3) ... 550s Selecting previously unselected package texlive-binaries. 550s Preparing to unpack .../189-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 550s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 551s Selecting previously unselected package texlive-base. 551s Preparing to unpack .../190-texlive-base_2024.20250114-1_all.deb ... 551s Unpacking texlive-base (2024.20250114-1) ... 552s Selecting previously unselected package texlive-latex-base. 552s Preparing to unpack .../191-texlive-latex-base_2024.20250114-1_all.deb ... 552s Unpacking texlive-latex-base (2024.20250114-1) ... 552s Selecting previously unselected package texlive-bibtex-extra. 552s Preparing to unpack .../192-texlive-bibtex-extra_2024.20250114-1_all.deb ... 552s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 555s Selecting previously unselected package r-bioc-biocversion. 555s Preparing to unpack .../193-r-bioc-biocversion_3.20.0-2_all.deb ... 555s Unpacking r-bioc-biocversion (3.20.0-2) ... 555s Selecting previously unselected package r-bioc-biocstyle. 555s Preparing to unpack .../194-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 555s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 555s Selecting previously unselected package r-bioc-graph. 555s Preparing to unpack .../195-r-bioc-graph_1.84.1-1_arm64.deb ... 555s Unpacking r-bioc-graph (1.84.1-1) ... 555s Selecting previously unselected package r-cran-bh. 555s Preparing to unpack .../196-r-cran-bh_1.84.0-1_all.deb ... 555s Unpacking r-cran-bh (1.84.0-1) ... 555s Selecting previously unselected package r-bioc-rbgl. 555s Preparing to unpack .../197-r-bioc-rbgl_1.82.0+dfsg-2_arm64.deb ... 555s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 555s Selecting previously unselected package r-cran-runit. 555s Preparing to unpack .../198-r-cran-runit_0.4.33-1_all.deb ... 555s Unpacking r-cran-runit (0.4.33-1) ... 555s Selecting previously unselected package r-cran-xml. 555s Preparing to unpack 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... 562s Setting up r-cran-knitr (1.49+dfsg-1) ... 562s Setting up g++ (4:14.2.0-1ubuntu1) ... 562s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 562s Setting up r-cran-cachem (1.1.0-1) ... 562s Setting up r-cran-sass (0.4.9+dfsg-1) ... 562s Setting up build-essential (12.10ubuntu1) ... 562s Setting up r-bioc-graph (1.84.1-1) ... 562s Setting up r-bioc-rbgl (1.82.0+dfsg-2) ... 562s Setting up r-cran-fontawesome (0.5.3-1) ... 562s Setting up gfortran (4:14.2.0-1ubuntu1) ... 562s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 562s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 562s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 562s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 562s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 562s Setting up texlive-bibtex-extra (2024.20250114-1) ... 562s Setting up r-cran-memoise (2.0.1-1) ... 562s Setting up r-cran-promises (1.3.2+dfsg-1) ... 562s Setting up r-base-dev (4.4.3-1) ... 562s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 562s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 562s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 562s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 562s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 562s Setting up r-cran-bookdown (0.42+dfsg-1) ... 562s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 562s Processing triggers for libc-bin (2.41-1ubuntu2) ... 562s Processing triggers for man-db (2.13.0-1) ... 564s Processing triggers for install-info (7.1.1-1) ... 565s Processing triggers for tex-common (6.19) ... 566s Running updmap-sys. This may take some time... done. 566s Running mktexlsr /var/lib/texmf ... done. 566s Building format(s) --all. 605s This may take some time... done. 606s autopkgtest [15:19:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 606s autopkgtest [15:19:15]: test pkg-r-autopkgtest: [----------------------- 607s Test: Try to load the R library RBGL 607s 607s R version 4.4.3 (2025-02-28) -- "Trophy Case" 607s Copyright (C) 2025 The R Foundation for Statistical Computing 607s Platform: aarch64-unknown-linux-gnu 607s 607s R is free software and comes with ABSOLUTELY NO WARRANTY. 607s You are welcome to redistribute it under certain conditions. 607s Type 'license()' or 'licence()' for distribution details. 607s 607s R is a collaborative project with many contributors. 607s Type 'contributors()' for more information and 607s 'citation()' on how to cite R or R packages in publications. 607s 607s Type 'demo()' for some demos, 'help()' for on-line help, or 607s 'help.start()' for an HTML browser interface to help. 607s Type 'q()' to quit R. 607s 607s > library('RBGL') 607s Loading required package: graph 607s Loading required package: BiocGenerics 607s 607s Attaching package: ‘BiocGenerics’ 607s 607s The following objects are masked from ‘package:stats’: 607s 607s IQR, mad, sd, var, xtabs 607s 607s The following objects are masked from ‘package:base’: 607s 607s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 607s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 607s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 607s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 607s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 607s table, tapply, union, unique, unsplit, which.max, which.min 607s 607s > 607s > 607s Other tests are currently unsupported! 607s They will be progressively added. 608s autopkgtest [15:19:17]: test pkg-r-autopkgtest: -----------------------] 608s autopkgtest [15:19:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 608s pkg-r-autopkgtest PASS 609s autopkgtest [15:19:18]: @@@@@@@@@@@@@@@@@@@@ summary 609s pkg-r-autopkgtest PASS 629s nova [W] Using flock in prodstack6-arm64 629s Creating nova instance adt-plucky-arm64-r-bioc-rbgl-20250315-150909-juju-7f2275-prod-proposed-migration-environment-2-d1216364-0a27-46d0-a662-2e922cc96401 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 629s nova [W] Timed out waiting for c73bde2e-c0a7-46a5-aace-7625fd23a1bb to get deleted.