0s autopkgtest [15:08:45]: starting date and time: 2025-03-15 15:08:45+0000 0s autopkgtest [15:08:45]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:08:45]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mmn_lck2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-oligo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-1.secgroup --name adt-plucky-arm64-r-bioc-oligo-20250315-150844-juju-7f2275-prod-proposed-migration-environment-15-44b2460f-e692-454a-bdf2-9f8389c270c4 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 177s autopkgtest [15:11:42]: testbed dpkg architecture: arm64 178s autopkgtest [15:11:43]: testbed apt version: 2.9.33 178s autopkgtest [15:11:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 178s autopkgtest [15:11:43]: testbed release detected to be: None 179s autopkgtest [15:11:44]: updating testbed package index (apt update) 179s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 180s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 180s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 180s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 180s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 180s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 180s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 181s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 181s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 181s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 181s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 181s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 181s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 181s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 181s Fetched 1094 kB in 2s (611 kB/s) 183s Reading package lists... 183s + lsb_release --codename --short 183s + RELEASE=plucky 183s + cat 183s + [ plucky != trusty ] 183s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 183s Reading package lists... 184s Building dependency tree... 184s Reading state information... 185s Calculating upgrade... 185s Calculating upgrade... 185s The following packages will be upgraded: 185s python3-jinja2 strace 186s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Need to get 608 kB of archives. 186s After this operation, 11.3 kB of additional disk space will be used. 186s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 186s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 187s Fetched 608 kB in 1s (600 kB/s) 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 187s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 187s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 187s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 189s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 189s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 189s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 189s Setting up strace (6.13+ds-1ubuntu1) ... 189s Processing triggers for man-db (2.13.0-1) ... 189s + /usr/lib/apt/apt-helper analyze-pattern ?true 189s + uname -r 189s + sed s/\./\\./g 189s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 189s + + tail -n+2 189s apt list ?obsolete 189s + cut -d/ -f1 189s + grep -v ^linux-.*6\.14\.0-10-generic.* 189s + obsolete_pkgs=linux-headers-6.11.0-8-generic 189s linux-headers-6.11.0-8 189s linux-image-6.11.0-8-generic 189s linux-modules-6.11.0-8-generic 189s linux-tools-6.11.0-8-generic 189s linux-tools-6.11.0-8 189s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 189s Reading package lists... 190s Building dependency tree... 190s Reading state information... 190s Solving dependencies... 191s The following packages will be REMOVED: 191s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 191s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 191s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 191s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 192s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 192s After this operation, 267 MB disk space will be freed. 192s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 192s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 192s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 192s Removing libpython3.12t64:arm64 (3.12.9-1) ... 192s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 192s Removing libnsl2:arm64 (1.3.0-3build3) ... 192s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 192s Removing libunwind8:arm64 (1.6.2-3.1) ... 192s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 192s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 194s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 195s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 195s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 195s /etc/kernel/postrm.d/initramfs-tools: 195s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 195s /etc/kernel/postrm.d/zz-flash-kernel: 195s flash-kernel: Kernel 6.11.0-8-generic has been removed. 195s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 195s /etc/kernel/postrm.d/zz-update-grub: 195s Sourcing file `/etc/default/grub' 195s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 195s Generating grub configuration file ... 196s Found linux image: /boot/vmlinuz-6.14.0-10-generic 196s Found initrd image: /boot/initrd.img-6.14.0-10-generic 196s Warning: os-prober will not be executed to detect other bootable partitions. 196s Systems on them will not be added to the GRUB boot configuration. 196s Check GRUB_DISABLE_OS_PROBER documentation entry. 196s Adding boot menu entry for UEFI Firmware Settings ... 196s done 196s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 197s Processing triggers for libc-bin (2.41-1ubuntu1) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 197s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 197s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 197s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 197s + grep -q trusty /etc/lsb-release 197s + [ ! -d /usr/share/doc/unattended-upgrades ] 197s + [ ! -d /usr/share/doc/lxd ] 197s + [ ! -d /usr/share/doc/lxd-client ] 197s + [ ! -d /usr/share/doc/snapd ] 197s + type iptables 197s + cat 197s + chmod 755 /etc/rc.local 197s + . /etc/rc.local 197s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 197s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 197s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 197s + uname -m 197s + [ aarch64 = ppc64le ] 197s + [ -d /run/systemd/system ] 197s + systemd-detect-virt --quiet --vm 197s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 197s + cat 197s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 197s + echo COMPRESS=lz4 197s autopkgtest [15:12:02]: upgrading testbed (apt dist-upgrade and autopurge) 197s Reading package lists... 198s Building dependency tree... 198s Reading state information... 199s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 199s Starting 2 pkgProblemResolver with broken count: 0 199s Done 201s Entering ResolveByKeep 201s 202s Calculating upgrade... 203s The following packages will be upgraded: 203s libc-bin libc-dev-bin libc6 libc6-dev locales 203s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 203s Need to get 9530 kB of archives. 203s After this operation, 0 B of additional disk space will be used. 203s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 205s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 205s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 208s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 208s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 213s Preconfiguring packages ... 213s Fetched 9530 kB in 10s (978 kB/s) 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 213s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 213s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 214s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 214s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 214s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 214s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 214s Setting up libc6:arm64 (2.41-1ubuntu2) ... 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 215s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 215s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up libc-bin (2.41-1ubuntu2) ... 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 215s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 215s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 215s Setting up locales (2.41-1ubuntu2) ... 216s Generating locales (this might take a while)... 219s en_US.UTF-8... done 219s Generation complete. 219s Setting up libc-dev-bin (2.41-1ubuntu2) ... 219s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 219s Processing triggers for man-db (2.13.0-1) ... 220s Processing triggers for systemd (257.3-1ubuntu3) ... 221s Reading package lists... 222s Building dependency tree... 222s Reading state information... 223s Starting pkgProblemResolver with broken count: 0 223s Starting 2 pkgProblemResolver with broken count: 0 223s Done 223s Solving dependencies... 224s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 224s autopkgtest [15:12:29]: rebooting testbed after setup commands that affected boot 253s autopkgtest [15:12:58]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 256s autopkgtest [15:13:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-oligo 259s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (dsc) [2274 B] 259s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (tar) [178 kB] 259s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-oligo 1.70.0+ds-2 (diff) [4724 B] 260s gpgv: Signature made Mon Jan 13 14:20:42 2025 UTC 260s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 260s gpgv: issuer "crusoe@debian.org" 260s gpgv: Can't check signature: No public key 260s dpkg-source: warning: cannot verify inline signature for ./r-bioc-oligo_1.70.0+ds-2.dsc: no acceptable signature found 260s autopkgtest [15:13:05]: testing package r-bioc-oligo version 1.70.0+ds-2 262s autopkgtest [15:13:07]: build not needed 271s autopkgtest [15:13:16]: test pkg-r-autopkgtest: preparing testbed 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 273s Starting pkgProblemResolver with broken count: 0 273s Starting 2 pkgProblemResolver with broken count: 0 273s Done 275s The following NEW packages will be installed: 275s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 275s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 275s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 275s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 275s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 275s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 275s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 275s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 275s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 275s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 275s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 275s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 275s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 275s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 275s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 275s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 275s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 275s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 275s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 275s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 275s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 275s libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 275s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 275s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 275s libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 275s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 275s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 275s r-bioc-affxparser r-bioc-affyio r-bioc-annotate r-bioc-annotationdbi 275s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocstyle 275s r-bioc-biocversion r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 275s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 275s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 275s r-bioc-matrixgenerics r-bioc-oligo r-bioc-oligoclasses r-bioc-preprocesscore 275s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 275s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 275s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit 275s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 275s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 275s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 275s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-ff 275s r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-generics 275s r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 275s r-cran-httr r-cran-httr2 r-cran-iterators r-cran-jquerylib r-cran-jsonlite 275s r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 275s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 275s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 275s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 275s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 275s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass 275s r-cran-shiny r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 275s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 275s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 275s r-cran-xml2 r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 275s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 275s xdg-utils zip zlib1g-dev 275s 0 upgraded, 268 newly installed, 0 to remove and 0 not upgraded. 275s Need to get 407 MB of archives. 275s After this operation, 1160 MB of additional disk space will be used. 275s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 276s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 276s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 285s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 285s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 285s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 285s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 285s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 285s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 285s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 288s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 289s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 291s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 292s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 293s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 296s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 314s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 314s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 314s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 314s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 316s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 327s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 328s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 328s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 328s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 328s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 328s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 328s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 328s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 328s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 329s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 329s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 329s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 329s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 333s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 335s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 335s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 335s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 344s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 344s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 344s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 344s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 344s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 344s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 345s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 345s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 345s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 347s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 352s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 352s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 352s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 352s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 352s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 352s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 352s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 352s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 352s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 352s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 352s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 352s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 352s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 352s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 358s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 360s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 360s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 360s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 360s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 360s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 360s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 360s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 361s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 364s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 364s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 364s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 364s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 364s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 364s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 364s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 364s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 364s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 364s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 364s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 364s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 364s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 364s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 367s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 370s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 370s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 370s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 370s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 370s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 370s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 370s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 370s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 370s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 370s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 370s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 370s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 370s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 370s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 371s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 371s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 372s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 372s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 372s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 372s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 373s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 374s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 374s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 374s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 374s Get:111 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 374s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 375s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 375s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 375s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 375s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 375s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 375s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 376s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 376s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 377s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 377s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 377s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 377s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 377s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 377s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 378s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 378s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 402s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 402s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 402s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 402s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 403s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 403s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 403s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 430s Get:136 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 435s Get:137 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 435s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 435s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 435s Get:140 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 435s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 435s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 435s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affxparser arm64 1.78.0-2 [1002 kB] 435s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 435s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-affyio arm64 1.76.0-2 [89.1 kB] 435s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 453s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 453s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 453s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 453s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 453s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 453s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 453s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 453s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 453s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 453s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 453s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 453s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 453s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 453s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 453s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 453s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 453s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 453s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 453s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 453s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 453s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 453s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 453s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 453s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 453s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 453s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 453s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 453s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 453s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 453s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 456s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 459s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 459s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 468s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 469s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 473s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 473s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 473s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 474s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 474s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 475s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 478s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 478s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 478s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 478s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 478s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 478s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 478s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 481s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 482s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 482s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 482s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 482s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 482s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 482s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 482s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 482s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 482s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 482s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 483s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 483s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 483s Get:208 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 493s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 493s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 493s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 493s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 493s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 493s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 493s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 493s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 493s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 493s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 493s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 494s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 494s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 494s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 494s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 495s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 495s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 495s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 497s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 499s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 504s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 504s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 504s Get:231 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 504s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 506s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 522s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 523s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 555s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 555s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 555s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 556s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 556s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 556s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr2 all 1.1.1-1 [752 kB] 556s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml2 arm64 1.3.7-1 [327 kB] 556s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 558s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 558s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 558s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 558s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 558s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 558s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 558s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 558s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 558s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 558s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genefilter arm64 1.88.0-2 [1241 kB] 558s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 559s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 559s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 559s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 559s Get:258 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 559s Get:259 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 559s Get:260 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 559s Get:261 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-ff arm64 4.5.2+ds-1 [1000 kB] 560s Get:262 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-oligoclasses all 1.68.0-2 [1259 kB] 560s Get:263 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-preprocesscore arm64 1.68.0+ds-2 [152 kB] 560s Get:264 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-oligo arm64 1.70.0+ds-2 [913 kB] 560s Get:265 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 560s Get:266 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 560s Get:267 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 560s Get:268 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 561s Preconfiguring packages ... 561s Fetched 407 MB in 4min 45s (1426 kB/s) 561s Selecting previously unselected package libisl23:arm64. 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 562s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 562s Unpacking libisl23:arm64 (0.27-1) ... 562s Selecting previously unselected package libmpc3:arm64. 562s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 562s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 562s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 562s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 562s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package cpp-14. 562s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 562s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package cpp-aarch64-linux-gnu. 562s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 562s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package cpp. 562s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 562s Unpacking cpp (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package libcc1-0:arm64. 562s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 562s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 562s Selecting previously unselected package libgomp1:arm64. 562s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 562s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 562s Selecting previously unselected package libitm1:arm64. 562s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 562s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 562s Selecting previously unselected package libasan8:arm64. 562s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 562s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 563s Selecting previously unselected package liblsan0:arm64. 563s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 563s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 563s Selecting previously unselected package libtsan2:arm64. 563s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 563s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 563s Selecting previously unselected package libubsan1:arm64. 563s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 563s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 563s Selecting previously unselected package libhwasan0:arm64. 563s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 563s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 567s Selecting previously unselected package libgcc-14-dev:arm64. 567s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 567s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package gcc-14. 567s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package gcc-aarch64-linux-gnu. 567s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 567s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 567s Selecting previously unselected package gcc. 567s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 567s Unpacking gcc (4:14.2.0-1ubuntu1) ... 567s Selecting previously unselected package libstdc++-14-dev:arm64. 567s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package g++-14-aarch64-linux-gnu. 567s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package g++-14. 567s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking g++-14 (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package g++-aarch64-linux-gnu. 567s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 567s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 567s Selecting previously unselected package g++. 567s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 567s Unpacking g++ (4:14.2.0-1ubuntu1) ... 567s Selecting previously unselected package build-essential. 567s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 567s Unpacking build-essential (12.10ubuntu1) ... 567s Selecting previously unselected package dctrl-tools. 567s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 567s Unpacking dctrl-tools (2.24-3build3) ... 567s Selecting previously unselected package fonts-dejavu-mono. 567s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 567s Unpacking fonts-dejavu-mono (2.37-8) ... 567s Selecting previously unselected package fonts-dejavu-core. 567s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 567s Unpacking fonts-dejavu-core (2.37-8) ... 567s Selecting previously unselected package fontconfig-config. 567s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 567s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 567s Selecting previously unselected package libfontconfig1:arm64. 567s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 567s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 567s Selecting previously unselected package fontconfig. 567s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 567s Unpacking fontconfig (2.15.0-2ubuntu1) ... 567s Selecting previously unselected package fonts-font-awesome. 567s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 567s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 567s Selecting previously unselected package fonts-glyphicons-halflings. 567s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 567s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 567s Selecting previously unselected package fonts-lmodern. 567s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 567s Unpacking fonts-lmodern (2.005-1) ... 567s Selecting previously unselected package fonts-mathjax. 567s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 567s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 567s Selecting previously unselected package libgfortran5:arm64. 567s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 567s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 567s Selecting previously unselected package libgfortran-14-dev:arm64. 567s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 567s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package gfortran-14. 567s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 567s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 567s Selecting previously unselected package gfortran-aarch64-linux-gnu. 567s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 567s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 567s Selecting previously unselected package gfortran. 567s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 567s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 567s Selecting previously unselected package icu-devtools. 567s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 567s Unpacking icu-devtools (76.1-1ubuntu2) ... 567s Selecting previously unselected package javascript-common. 567s Preparing to unpack .../042-javascript-common_12_all.deb ... 567s Unpacking javascript-common (12) ... 567s Selecting previously unselected package libio-string-perl. 567s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 567s Unpacking libio-string-perl (1.08-4) ... 567s Selecting previously unselected package liblatex-tounicode-perl. 567s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 567s Unpacking liblatex-tounicode-perl (0.55-1) ... 567s Selecting previously unselected package libbibtex-parser-perl. 567s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 567s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 567s Selecting previously unselected package libblas3:arm64. 567s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 567s Unpacking libblas3:arm64 (3.12.1-2) ... 567s Selecting previously unselected package libblas-dev:arm64. 567s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 567s Unpacking libblas-dev:arm64 (3.12.1-2) ... 568s Selecting previously unselected package libbz2-dev:arm64. 568s Preparing to unpack .../048-libbz2-dev_1.0.8-6_arm64.deb ... 568s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 568s Selecting previously unselected package libpixman-1-0:arm64. 568s Preparing to unpack .../049-libpixman-1-0_0.44.0-3_arm64.deb ... 568s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 568s Selecting previously unselected package libxcb-render0:arm64. 568s Preparing to unpack .../050-libxcb-render0_1.17.0-2_arm64.deb ... 568s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 568s Selecting previously unselected package libxcb-shm0:arm64. 568s Preparing to unpack .../051-libxcb-shm0_1.17.0-2_arm64.deb ... 568s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 568s Selecting previously unselected package libxrender1:arm64. 568s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 568s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 568s Selecting previously unselected package libcairo2:arm64. 568s Preparing to unpack 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libharfbuzz0b:arm64 (10.2.0-1) ... 568s Selecting previously unselected package x11-common. 568s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu3_all.deb ... 568s Unpacking x11-common (1:7.7+23ubuntu3) ... 568s Selecting previously unselected package libice6:arm64. 568s Preparing to unpack .../060-libice6_2%3a1.1.1-1_arm64.deb ... 568s Unpacking libice6:arm64 (2:1.1.1-1) ... 568s Selecting previously unselected package libicu-dev:arm64. 568s Preparing to unpack .../061-libicu-dev_76.1-1ubuntu2_arm64.deb ... 568s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 568s Selecting previously unselected package libjpeg-turbo8:arm64. 568s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 568s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 568s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 568s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 568s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 568s Selecting previously unselected package libjpeg8:arm64. 568s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ... 568s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 568s Selecting previously unselected package libjpeg8-dev:arm64. 568s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 568s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 568s Selecting previously unselected package libjpeg-dev:arm64. 568s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 568s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 569s Selecting previously unselected package libjs-bootstrap. 569s Preparing to unpack .../067-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 569s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 569s Selecting previously unselected package libjs-popper.js. 569s Preparing to unpack .../068-libjs-popper.js_1.16.1+ds-6_all.deb ... 569s Unpacking libjs-popper.js (1.16.1+ds-6) ... 569s Selecting previously unselected package libjs-bootstrap4. 569s Preparing to unpack .../069-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 569s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 569s Selecting previously unselected package libjs-d3. 569s Preparing to unpack .../070-libjs-d3_3.5.17-4_all.deb ... 569s Unpacking libjs-d3 (3.5.17-4) ... 569s Selecting previously unselected package libjs-es5-shim. 569s Preparing to unpack .../071-libjs-es5-shim_4.6.7-2_all.deb ... 569s Unpacking libjs-es5-shim (4.6.7-2) ... 569s Selecting previously unselected package libjs-highlight.js. 569s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 569s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 569s Selecting previously unselected package libjs-jquery. 569s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 569s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 569s Selecting previously unselected package libjs-jquery-datatables. 569s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 569s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 569s Selecting previously unselected package libjs-sifter.js. 569s Preparing to unpack .../075-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 569s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 569s Selecting previously unselected package libjs-microplugin.js. 569s Preparing to unpack .../076-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 569s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 569s Selecting previously unselected package libjs-jquery-selectize.js. 569s Preparing to unpack .../077-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 569s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 569s Selecting previously unselected package libjs-jquery-ui. 569s Preparing to unpack .../078-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 569s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 570s Selecting previously unselected package libjs-json. 570s Preparing to unpack .../079-libjs-json_0~20221030+~1.0.8-1_all.deb ... 570s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 570s Selecting previously unselected package libjs-lunr. 570s Preparing to unpack .../080-libjs-lunr_2.3.9~dfsg-2_all.deb ... 570s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 570s Selecting previously unselected package libjs-prettify. 570s Preparing to unpack .../081-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 570s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 570s Selecting previously unselected package libkpathsea6:arm64. 570s Preparing to unpack .../082-libkpathsea6_2024.20240313.70630+ds-5build2_arm64.deb ... 570s Unpacking libkpathsea6:arm64 (2024.20240313.70630+ds-5build2) ... 570s Selecting previously unselected package liblapack3:arm64. 570s Preparing to unpack .../083-liblapack3_3.12.1-2_arm64.deb ... 570s Unpacking liblapack3:arm64 (3.12.1-2) ... 570s Selecting previously unselected package liblapack-dev:arm64. 570s Preparing to unpack .../084-liblapack-dev_3.12.1-2_arm64.deb ... 570s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 570s Selecting previously unselected package liblerc4:arm64. 570s Preparing to unpack .../085-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 570s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 570s Selecting previously unselected package liblua5.4-0:arm64. 570s Preparing to unpack .../086-liblua5.4-0_5.4.7-1_arm64.deb ... 570s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 570s Selecting previously unselected package libmpfi0:arm64. 570s Preparing to unpack .../087-libmpfi0_1.5.4+ds-4_arm64.deb ... 570s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 570s Selecting previously unselected package libncurses-dev:arm64. 570s Preparing to unpack .../088-libncurses-dev_6.5+20250216-2_arm64.deb ... 570s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 570s Selecting previously unselected package libthai-data. 570s Preparing to unpack .../089-libthai-data_0.1.29-2build1_all.deb ... 570s Unpacking libthai-data (0.1.29-2build1) ... 578s Selecting previously unselected package libthai0:arm64. 579s Preparing to unpack .../090-libthai0_0.1.29-2build1_arm64.deb ... 579s Unpacking libthai0:arm64 (0.1.29-2build1) ... 579s Selecting previously unselected package libpango-1.0-0:arm64. 579s Preparing to unpack .../091-libpango-1.0-0_1.56.2-1_arm64.deb ... 579s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 579s Selecting previously unselected package libpangoft2-1.0-0:arm64. 579s Preparing to unpack .../092-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 579s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 579s Selecting previously unselected package libpangocairo-1.0-0:arm64. 579s Preparing to unpack .../093-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 579s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 579s Selecting previously unselected package libpaper2:arm64. 579s Preparing to unpack .../094-libpaper2_2.2.5-0.3_arm64.deb ... 579s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 579s Selecting previously unselected package libpaper-utils. 579s Preparing to unpack .../095-libpaper-utils_2.2.5-0.3_arm64.deb ... 579s Unpacking libpaper-utils (2.2.5-0.3) ... 579s Selecting previously unselected package libpcre2-16-0:arm64. 579s Preparing to unpack .../096-libpcre2-16-0_10.45-1_arm64.deb ... 579s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 579s Selecting previously unselected package libpcre2-32-0:arm64. 579s Preparing to unpack .../097-libpcre2-32-0_10.45-1_arm64.deb ... 579s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 579s Selecting previously unselected package libpcre2-posix3:arm64. 579s Preparing to unpack .../098-libpcre2-posix3_10.45-1_arm64.deb ... 579s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 579s Selecting previously unselected package libpcre2-dev:arm64. 579s Preparing to unpack .../099-libpcre2-dev_10.45-1_arm64.deb ... 579s Unpacking libpcre2-dev:arm64 (10.45-1) ... 579s Selecting previously unselected package libpkgconf3:arm64. 579s Preparing to unpack .../100-libpkgconf3_1.8.1-4_arm64.deb ... 579s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 579s Selecting previously unselected package zlib1g-dev:arm64. 579s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 579s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 579s Selecting previously unselected package libpng-dev:arm64. 579s Preparing to unpack .../102-libpng-dev_1.6.47-1_arm64.deb ... 579s Unpacking libpng-dev:arm64 (1.6.47-1) ... 579s Selecting previously unselected package libpotrace0:arm64. 579s Preparing to unpack .../103-libpotrace0_1.16-2build1_arm64.deb ... 579s Unpacking libpotrace0:arm64 (1.16-2build1) ... 579s Selecting previously unselected package libptexenc1:arm64. 579s Preparing to unpack .../104-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 579s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 579s Selecting previously unselected package libreadline-dev:arm64. 579s Preparing to unpack .../105-libreadline-dev_8.2-6_arm64.deb ... 579s Unpacking libreadline-dev:arm64 (8.2-6) ... 579s Selecting previously unselected package libsharpyuv0:arm64. 579s Preparing to unpack .../106-libsharpyuv0_1.5.0-0.1_arm64.deb ... 579s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 579s Selecting previously unselected package libsm6:arm64. 579s Preparing to unpack .../107-libsm6_2%3a1.2.4-1_arm64.deb ... 579s Unpacking libsm6:arm64 (2:1.2.4-1) ... 579s Selecting previously unselected package libsynctex2:arm64. 579s Preparing to unpack .../108-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 579s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 579s Selecting previously unselected package libtcl8.6:arm64. 579s Preparing to unpack .../109-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 579s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 579s Selecting previously unselected package libteckit0:arm64. 579s Preparing to unpack .../110-libteckit0_2.5.12+ds1-1_arm64.deb ... 579s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 579s Selecting previously unselected package libtexlua53-5:arm64. 579s Preparing to unpack .../111-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 579s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 579s Selecting previously unselected package libjbig0:arm64. 579s Preparing to unpack .../112-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 579s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 579s Selecting previously unselected package libwebp7:arm64. 579s Preparing to unpack .../113-libwebp7_1.5.0-0.1_arm64.deb ... 579s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 579s Selecting previously unselected package libtiff6:arm64. 579s Preparing to unpack .../114-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 579s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 579s Selecting previously unselected package libxft2:arm64. 579s Preparing to unpack .../115-libxft2_2.3.6-1build1_arm64.deb ... 579s Unpacking libxft2:arm64 (2.3.6-1build1) ... 579s Selecting previously unselected package libxss1:arm64. 579s Preparing to unpack .../116-libxss1_1%3a1.2.3-1build3_arm64.deb ... 579s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 579s Selecting previously unselected package libtk8.6:arm64. 579s Preparing to unpack .../117-libtk8.6_8.6.16-1_arm64.deb ... 579s Unpacking libtk8.6:arm64 (8.6.16-1) ... 579s Selecting previously unselected package libxt6t64:arm64. 579s Preparing to unpack .../118-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 579s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 579s Selecting previously unselected package libxmu6:arm64. 579s Preparing to unpack .../119-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 579s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 579s Selecting previously unselected package libxpm4:arm64. 579s Preparing to unpack .../120-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 579s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 579s Selecting previously unselected package libxaw7:arm64. 579s Preparing to unpack .../121-libxaw7_2%3a1.0.16-1_arm64.deb ... 579s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 579s Selecting previously unselected package libxi6:arm64. 579s Preparing to unpack .../122-libxi6_2%3a1.8.2-1_arm64.deb ... 579s Unpacking libxi6:arm64 (2:1.8.2-1) ... 579s Selecting previously unselected package libzzip-0-13t64:arm64. 579s Preparing to unpack .../123-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 579s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 579s Selecting previously unselected package zip. 579s Preparing to unpack .../124-zip_3.0-14ubuntu2_arm64.deb ... 579s Unpacking zip (3.0-14ubuntu2) ... 579s Selecting previously unselected package unzip. 579s Preparing to unpack .../125-unzip_6.0-28ubuntu6_arm64.deb ... 579s Unpacking unzip (6.0-28ubuntu6) ... 579s Selecting previously unselected package xdg-utils. 579s Preparing to unpack .../126-xdg-utils_1.2.1-2ubuntu1_all.deb ... 579s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 579s Selecting previously unselected package r-base-core. 579s Preparing to unpack .../127-r-base-core_4.4.3-1_arm64.deb ... 579s Unpacking r-base-core (4.4.3-1) ... 579s Selecting previously unselected package r-cran-littler. 579s Preparing to unpack .../128-r-cran-littler_0.3.20-2_arm64.deb ... 579s Unpacking r-cran-littler (0.3.20-2) ... 579s Selecting previously unselected package littler. 579s Preparing to unpack .../129-littler_0.3.20-2_all.deb ... 579s Unpacking littler (0.3.20-2) ... 579s Selecting previously unselected package node-bootstrap-sass. 579s Preparing to unpack .../130-node-bootstrap-sass_3.4.3-2_all.deb ... 579s Unpacking node-bootstrap-sass (3.4.3-2) ... 579s Selecting previously unselected package node-html5shiv. 579s Preparing to unpack .../131-node-html5shiv_3.7.3+dfsg-5_all.deb ... 579s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 579s Selecting previously unselected package node-normalize.css. 579s Preparing to unpack .../132-node-normalize.css_8.0.1-5_all.deb ... 579s Unpacking node-normalize.css (8.0.1-5) ... 579s Selecting previously unselected package pandoc-data. 579s Preparing to unpack .../133-pandoc-data_3.1.11.1-3build1_all.deb ... 579s Unpacking pandoc-data (3.1.11.1-3build1) ... 579s Selecting previously unselected package pandoc. 579s Preparing to unpack .../134-pandoc_3.1.11.1+ds-2_arm64.deb ... 579s Unpacking pandoc (3.1.11.1+ds-2) ... 579s Selecting previously unselected package liblzma-dev:arm64. 579s Preparing to unpack .../135-liblzma-dev_5.6.4-1_arm64.deb ... 579s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 579s Selecting previously unselected package pkgconf-bin. 579s Preparing to unpack .../136-pkgconf-bin_1.8.1-4_arm64.deb ... 579s Unpacking pkgconf-bin (1.8.1-4) ... 579s Selecting previously unselected package pkgconf:arm64. 579s Preparing to unpack .../137-pkgconf_1.8.1-4_arm64.deb ... 579s Unpacking pkgconf:arm64 (1.8.1-4) ... 579s Selecting previously unselected package libtirpc-dev:arm64. 579s Preparing to unpack .../138-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 579s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 579s Selecting previously unselected package r-base-dev. 579s Preparing to unpack .../139-r-base-dev_4.4.3-1_all.deb ... 579s Unpacking r-base-dev (4.4.3-1) ... 579s Selecting previously unselected package pkg-r-autopkgtest. 579s Preparing to unpack .../140-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 579s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 579s Selecting previously unselected package r-bioc-biocgenerics. 579s Preparing to unpack .../141-r-bioc-biocgenerics_0.52.0-2_all.deb ... 579s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 579s Selecting previously unselected package r-bioc-affxparser. 579s Preparing to unpack .../142-r-bioc-affxparser_1.78.0-2_arm64.deb ... 579s Unpacking r-bioc-affxparser (1.78.0-2) ... 579s Selecting previously unselected package r-bioc-zlibbioc. 579s Preparing to unpack .../143-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 579s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 579s Selecting previously unselected package r-bioc-affyio. 579s Preparing to unpack .../144-r-bioc-affyio_1.76.0-2_arm64.deb ... 579s Unpacking r-bioc-affyio (1.76.0-2) ... 579s Selecting previously unselected package r-bioc-biobase. 579s Preparing to unpack .../145-r-bioc-biobase_2.66.0-2_arm64.deb ... 579s Unpacking r-bioc-biobase (2.66.0-2) ... 579s Selecting previously unselected package r-bioc-s4vectors. 579s Preparing to unpack .../146-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 579s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 579s Selecting previously unselected package r-bioc-iranges. 579s Preparing to unpack .../147-r-bioc-iranges_2.40.1-2_arm64.deb ... 579s Unpacking r-bioc-iranges (2.40.1-2) ... 579s Selecting previously unselected package r-cran-dbi. 579s Preparing to unpack .../148-r-cran-dbi_1.2.3-1_all.deb ... 579s Unpacking r-cran-dbi (1.2.3-1) ... 579s Selecting previously unselected package r-cran-bit. 579s Preparing to unpack .../149-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 579s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 579s Selecting previously unselected package r-cran-bit64. 579s Preparing to unpack .../150-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 579s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 579s Selecting previously unselected package r-cran-rlang. 579s Preparing to unpack .../151-r-cran-rlang_1.1.5-1_arm64.deb ... 579s Unpacking r-cran-rlang (1.1.5-1) ... 579s Selecting previously unselected package r-cran-cli. 579s Preparing to unpack .../152-r-cran-cli_3.6.4-1_arm64.deb ... 579s Unpacking r-cran-cli (3.6.4-1) ... 579s Selecting previously unselected package r-cran-glue. 579s Preparing to unpack .../153-r-cran-glue_1.8.0-1_arm64.deb ... 579s Unpacking r-cran-glue (1.8.0-1) ... 579s Selecting previously unselected package r-cran-lifecycle. 579s Preparing to unpack .../154-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 579s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 579s Selecting previously unselected package r-cran-vctrs. 579s Preparing to unpack .../155-r-cran-vctrs_0.6.5-1_arm64.deb ... 579s Unpacking r-cran-vctrs (0.6.5-1) ... 579s Selecting previously unselected package r-cran-blob. 579s Preparing to unpack .../156-r-cran-blob_1.2.4-1_all.deb ... 579s Unpacking r-cran-blob (1.2.4-1) ... 579s Selecting previously unselected package r-cran-fastmap. 579s Preparing to unpack .../157-r-cran-fastmap_1.2.0-1_arm64.deb ... 579s Unpacking r-cran-fastmap (1.2.0-1) ... 579s Selecting previously unselected package r-cran-cachem. 579s Preparing to unpack .../158-r-cran-cachem_1.1.0-1_arm64.deb ... 579s Unpacking r-cran-cachem (1.1.0-1) ... 579s Selecting previously unselected package r-cran-memoise. 579s Preparing to unpack .../159-r-cran-memoise_2.0.1-1_all.deb ... 579s Unpacking r-cran-memoise (2.0.1-1) ... 579s Selecting previously unselected package r-cran-pkgconfig. 579s Preparing to unpack .../160-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 579s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 579s Selecting previously unselected package r-cran-plogr. 579s Preparing to unpack .../161-r-cran-plogr_0.2.0-3build1_all.deb ... 579s Unpacking r-cran-plogr (0.2.0-3build1) ... 579s Selecting previously unselected package r-cran-cpp11. 579s Preparing to unpack .../162-r-cran-cpp11_0.5.2-1_all.deb ... 579s Unpacking r-cran-cpp11 (0.5.2-1) ... 579s Selecting previously unselected package r-cran-rsqlite. 579s Preparing to unpack .../163-r-cran-rsqlite_2.3.9-1_arm64.deb ... 579s Unpacking r-cran-rsqlite (2.3.9-1) ... 579s Selecting previously unselected package r-cran-curl. 579s Preparing to unpack .../164-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 579s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 579s Selecting previously unselected package r-cran-jsonlite. 579s Preparing to unpack .../165-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 579s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 579s Selecting previously unselected package r-cran-mime. 579s Preparing to unpack .../166-r-cran-mime_0.12-2_arm64.deb ... 579s Unpacking r-cran-mime (0.12-2) ... 579s Selecting previously unselected package r-cran-sys. 579s Preparing to unpack .../167-r-cran-sys_3.4.3-1_arm64.deb ... 579s Unpacking r-cran-sys (3.4.3-1) ... 579s Selecting previously unselected package r-cran-askpass. 579s Preparing to unpack .../168-r-cran-askpass_1.2.1-1_arm64.deb ... 579s Unpacking r-cran-askpass (1.2.1-1) ... 579s Selecting previously unselected package r-cran-openssl. 579s Preparing to unpack .../169-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 579s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 579s Selecting previously unselected package r-cran-r6. 579s Preparing to unpack .../170-r-cran-r6_2.6.1-1_all.deb ... 579s Unpacking r-cran-r6 (2.6.1-1) ... 579s Selecting previously unselected package r-cran-httr. 579s Preparing to unpack .../171-r-cran-httr_1.4.7+dfsg-1_all.deb ... 579s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 579s Selecting previously unselected package r-cran-png. 579s Preparing to unpack .../172-r-cran-png_0.1-8-1build2_arm64.deb ... 579s Unpacking r-cran-png (0.1-8-1build2) ... 579s Selecting previously unselected package r-bioc-xvector. 579s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ... 579s Unpacking r-bioc-xvector (0.46.0-2) ... 579s Selecting previously unselected package r-bioc-ucsc.utils. 579s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 579s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 579s Selecting previously unselected package r-bioc-genomeinfodbdata. 579s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 579s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 579s Selecting previously unselected package r-bioc-genomeinfodb. 579s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 579s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 579s Selecting previously unselected package r-cran-crayon. 579s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ... 579s Unpacking r-cran-crayon (1.5.3-1) ... 579s Selecting previously unselected package r-bioc-biostrings. 579s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 579s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 579s Selecting previously unselected package r-bioc-keggrest. 579s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 579s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 579s Selecting previously unselected package r-bioc-annotationdbi. 579s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ... 579s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 579s Selecting previously unselected package r-cran-xml. 579s Preparing to unpack .../181-r-cran-xml_3.99-0.18-1_arm64.deb ... 579s Unpacking r-cran-xml (3.99-0.18-1) ... 579s Selecting previously unselected package r-cran-xtable. 579s Preparing to unpack .../182-r-cran-xtable_1%3a1.8-4-2_all.deb ... 579s Unpacking r-cran-xtable (1:1.8-4-2) ... 579s Selecting previously unselected package r-bioc-annotate. 579s Preparing to unpack .../183-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 579s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 579s Selecting previously unselected package r-cran-generics. 579s Preparing to unpack .../184-r-cran-generics_0.1.3-1_all.deb ... 579s Unpacking r-cran-generics (0.1.3-1) ... 579s Selecting previously unselected package r-cran-magrittr. 579s Preparing to unpack .../185-r-cran-magrittr_2.0.3-1_arm64.deb ... 579s Unpacking r-cran-magrittr (2.0.3-1) ... 579s Selecting previously unselected package r-cran-utf8. 579s Preparing to unpack .../186-r-cran-utf8_1.2.4-1_arm64.deb ... 579s Unpacking r-cran-utf8 (1.2.4-1) ... 579s Selecting previously unselected package r-cran-pillar. 579s Preparing to unpack .../187-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 579s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 579s Selecting previously unselected package r-cran-fansi. 579s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_arm64.deb ... 579s Unpacking r-cran-fansi (1.0.5-1) ... 583s Selecting previously unselected package r-cran-tibble. 583s Preparing to unpack .../189-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 583s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 583s Selecting previously unselected package r-cran-withr. 583s Preparing to unpack .../190-r-cran-withr_3.0.2+dfsg-1_all.deb ... 583s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 583s Selecting previously unselected package r-cran-tidyselect. 583s Preparing to unpack .../191-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 583s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 583s Selecting previously unselected package r-cran-dplyr. 583s Preparing to unpack .../192-r-cran-dplyr_1.1.4-4_arm64.deb ... 583s Unpacking r-cran-dplyr (1.1.4-4) ... 583s Selecting previously unselected package r-cran-purrr. 583s Preparing to unpack .../193-r-cran-purrr_1.0.4-1_arm64.deb ... 583s Unpacking r-cran-purrr (1.0.4-1) ... 583s Selecting previously unselected package r-cran-stringi. 583s Preparing to unpack .../194-r-cran-stringi_1.8.4-1build1_arm64.deb ... 583s Unpacking r-cran-stringi (1.8.4-1build1) ... 583s Selecting previously unselected package r-cran-stringr. 583s Preparing to unpack .../195-r-cran-stringr_1.5.1-1_all.deb ... 583s Unpacking r-cran-stringr (1.5.1-1) ... 583s Selecting previously unselected package r-cran-tidyr. 583s Preparing to unpack .../196-r-cran-tidyr_1.3.1-1_arm64.deb ... 583s Unpacking r-cran-tidyr (1.3.1-1) ... 583s Selecting previously unselected package r-cran-dbplyr. 583s Preparing to unpack .../197-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 583s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 583s Selecting previously unselected package r-cran-filelock. 583s Preparing to unpack .../198-r-cran-filelock_1.0.3-1_arm64.deb ... 583s Unpacking r-cran-filelock (1.0.3-1) ... 583s Selecting previously unselected package r-bioc-biocfilecache. 583s Preparing to unpack .../199-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 583s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 583s Selecting previously unselected package r-cran-base64enc. 583s Preparing to unpack .../200-r-cran-base64enc_0.1-3-3_arm64.deb ... 583s Unpacking r-cran-base64enc (0.1-3-3) ... 583s Selecting previously unselected package r-cran-digest. 583s Preparing to unpack .../201-r-cran-digest_0.6.37-1_arm64.deb ... 583s Unpacking r-cran-digest (0.6.37-1) ... 583s Selecting previously unselected package r-cran-htmltools. 583s Preparing to unpack .../202-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 583s Unpacking r-cran-htmltools (0.5.8.1-1) ... 583s Selecting previously unselected package r-cran-evaluate. 583s Preparing to unpack .../203-r-cran-evaluate_1.0.3-1_all.deb ... 583s Unpacking r-cran-evaluate (1.0.3-1) ... 583s Selecting previously unselected package r-cran-xfun. 583s Preparing to unpack .../204-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 583s Unpacking r-cran-xfun (0.51+dfsg-1) ... 583s Selecting previously unselected package r-cran-highr. 583s Preparing to unpack .../205-r-cran-highr_0.11+dfsg-1_all.deb ... 583s Unpacking r-cran-highr (0.11+dfsg-1) ... 583s Selecting previously unselected package r-cran-yaml. 583s Preparing to unpack .../206-r-cran-yaml_2.3.10-1_arm64.deb ... 583s Unpacking r-cran-yaml (2.3.10-1) ... 583s Selecting previously unselected package libjs-mathjax. 583s Preparing to unpack .../207-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 583s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 583s Selecting previously unselected package r-cran-knitr. 583s Preparing to unpack .../208-r-cran-knitr_1.49+dfsg-1_all.deb ... 583s Unpacking r-cran-knitr (1.49+dfsg-1) ... 583s Selecting previously unselected package r-cran-jquerylib. 583s Preparing to unpack .../209-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 583s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 583s Selecting previously unselected package r-cran-fs. 583s Preparing to unpack .../210-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 583s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 583s Selecting previously unselected package r-cran-rappdirs. 583s Preparing to unpack .../211-r-cran-rappdirs_0.3.3-1_arm64.deb ... 583s Unpacking r-cran-rappdirs (0.3.3-1) ... 583s Selecting previously unselected package r-cran-sass. 583s Preparing to unpack .../212-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 583s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 583s Selecting previously unselected package r-cran-bslib. 583s Preparing to unpack .../213-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 583s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 583s Selecting previously unselected package r-cran-fontawesome. 583s Preparing to unpack .../214-r-cran-fontawesome_0.5.3-1_all.deb ... 583s Unpacking r-cran-fontawesome (0.5.3-1) ... 583s Selecting previously unselected package r-cran-tinytex. 583s Preparing to unpack .../215-r-cran-tinytex_0.56-1_all.deb ... 583s Unpacking r-cran-tinytex (0.56-1) ... 583s Selecting previously unselected package libjs-modernizr. 583s Preparing to unpack .../216-libjs-modernizr_3.13.0-0.1_all.deb ... 585s Unpacking libjs-modernizr (3.13.0-0.1) ... 585s Selecting previously unselected package r-cran-pkgkitten. 585s Preparing to unpack .../217-r-cran-pkgkitten_0.2.4-1_all.deb ... 585s Unpacking r-cran-pkgkitten (0.2.4-1) ... 585s Selecting previously unselected package r-cran-rcpp. 585s Preparing to unpack .../218-r-cran-rcpp_1.0.14-1_arm64.deb ... 585s Unpacking r-cran-rcpp (1.0.14-1) ... 585s Selecting previously unselected package r-cran-later. 585s Preparing to unpack .../219-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 585s Unpacking r-cran-later (1.4.1+dfsg-1) ... 585s Selecting previously unselected package r-cran-promises. 585s Preparing to unpack .../220-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 585s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 585s Selecting previously unselected package r-cran-httpuv. 585s Preparing to unpack .../221-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 585s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 585s Selecting previously unselected package r-cran-sourcetools. 585s Preparing to unpack .../222-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 585s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 585s Selecting previously unselected package r-cran-commonmark. 585s Preparing to unpack .../223-r-cran-commonmark_1.9.2-2_arm64.deb ... 585s Unpacking r-cran-commonmark (1.9.2-2) ... 585s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 585s Preparing to unpack .../224-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 585s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 585s Selecting previously unselected package r-cran-shiny. 585s Preparing to unpack .../225-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 585s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 585s Selecting previously unselected package r-cran-rmarkdown. 585s Preparing to unpack .../226-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 585s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 585s Selecting previously unselected package r-cran-bookdown. 585s Preparing to unpack .../227-r-cran-bookdown_0.42+dfsg-1_all.deb ... 585s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 585s Selecting previously unselected package r-cran-biocmanager. 585s Preparing to unpack .../228-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 585s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 585s Selecting previously unselected package tex-common. 585s Preparing to unpack .../229-tex-common_6.19_all.deb ... 585s Unpacking tex-common (6.19) ... 585s Selecting previously unselected package t1utils. 585s Preparing to unpack .../230-t1utils_1.41-4build3_arm64.deb ... 585s Unpacking t1utils (1.41-4build3) ... 585s Selecting previously unselected package texlive-binaries. 585s Preparing to unpack .../231-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 585s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 585s Selecting previously unselected package texlive-base. 585s Preparing to unpack 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591s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 591s Selecting previously unselected package r-bioc-sparsearray. 591s Preparing to unpack .../249-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 591s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 591s Selecting previously unselected package r-bioc-delayedarray. 591s Preparing to unpack .../250-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 591s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 591s Selecting previously unselected package r-cran-survival. 591s Preparing to unpack .../251-r-cran-survival_3.8-3-1_arm64.deb ... 591s Unpacking r-cran-survival (3.8-3-1) ... 591s Selecting previously unselected package r-bioc-genefilter. 591s Preparing to unpack .../252-r-bioc-genefilter_1.88.0-2_arm64.deb ... 591s Unpacking r-bioc-genefilter (1.88.0-2) ... 591s Selecting previously unselected package r-bioc-genomicranges. 591s Preparing to unpack .../253-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 591s Unpacking r-bioc-genomicranges 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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 598s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 599s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 599s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 599s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 599s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 599s Setting up texlive-bibtex-extra (2024.20250114-1) ... 599s Setting up r-cran-httr2 (1.1.1-1) ... 599s Setting up r-cran-httr (1.4.7+dfsg-1) ... 599s Setting up r-cran-hms (1.1.3-1) ... 599s Setting up r-cran-memoise (2.0.1-1) ... 599s Setting up r-cran-promises (1.3.2+dfsg-1) ... 599s Setting up r-cran-purrr (1.0.4-1) ... 599s Setting up r-cran-blob (1.2.4-1) 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This may take some time... done. 601s Running mktexlsr /var/lib/texmf ... done. 601s Building format(s) --all. 639s This may take some time... done. 779s autopkgtest [15:21:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 779s autopkgtest [15:21:44]: test pkg-r-autopkgtest: [----------------------- 782s Test: Try to load the R library oligo 783s 783s R version 4.4.3 (2025-02-28) -- "Trophy Case" 783s Copyright (C) 2025 The R Foundation for Statistical Computing 783s Platform: aarch64-unknown-linux-gnu 783s 783s R is free software and comes with ABSOLUTELY NO WARRANTY. 783s You are welcome to redistribute it under certain conditions. 783s Type 'license()' or 'licence()' for distribution details. 783s 783s R is a collaborative project with many contributors. 783s Type 'contributors()' for more information and 783s 'citation()' on how to cite R or R packages in publications. 783s 783s Type 'demo()' for some demos, 'help()' for on-line help, or 783s 'help.start()' for an HTML browser interface to help. 783s Type 'q()' to quit R. 783s 783s > library('oligo') 783s Loading required package: BiocGenerics 783s 783s Attaching package: ‘BiocGenerics’ 783s 783s The following objects are masked from ‘package:stats’: 783s 783s IQR, mad, sd, var, xtabs 783s 783s The following objects are masked from ‘package:base’: 783s 783s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 783s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 783s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 783s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 783s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 783s table, tapply, union, unique, unsplit, which.max, which.min 783s 783s Loading required package: oligoClasses 790s Welcome to oligoClasses version 1.68.0 790s Loading required package: Biobase 790s Welcome to Bioconductor 790s 790s Vignettes contain introductory material; view with 790s 'browseVignettes()'. To cite Bioconductor, see 790s 'citation("Biobase")', and for packages 'citation("pkgname")'. 790s 790s Loading required package: Biostrings 790s Loading required package: S4Vectors 790s Loading required package: stats4 790s 790s Attaching package: ‘S4Vectors’ 790s 790s The following object is masked from ‘package:utils’: 790s 790s findMatches 790s 790s The following objects are masked from ‘package:base’: 790s 790s expand.grid, I, unname 790s 790s Loading required package: IRanges 790s Loading required package: XVector 790s Loading required package: GenomeInfoDb 790s 790s Attaching package: ‘Biostrings’ 790s 790s The following object is masked from ‘package:base’: 790s 790s strsplit 790s 790s ================================================================================ 790s Welcome to oligo version 1.70.0 790s ================================================================================ 790s > 790s > 790s Other tests are currently unsupported! 790s They will be progressively added. 791s autopkgtest [15:21:56]: test pkg-r-autopkgtest: -----------------------] 819s autopkgtest [15:22:24]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 820s pkg-r-autopkgtest PASS 853s autopkgtest [15:22:58]: @@@@@@@@@@@@@@@@@@@@ summary 853s pkg-r-autopkgtest PASS 900s nova [W] Using flock in prodstack6-arm64 900s flock: timeout while waiting to get lock 900s Creating nova instance adt-plucky-arm64-r-bioc-oligo-20250315-150844-juju-7f2275-prod-proposed-migration-environment-15-44b2460f-e692-454a-bdf2-9f8389c270c4 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 900s nova [W] Timed out waiting for aefb4605-c4c0-4ddb-86bb-210b4ce8df39 to get deleted.