0s autopkgtest [15:08:36]: starting date and time: 2025-03-15 15:08:36+0000
  0s autopkgtest [15:08:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [15:08:36]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r5qvwhoq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-multtest --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-34.secgroup --name adt-plucky-arm64-r-bioc-multtest-20250315-150836-juju-7f2275-prod-proposed-migration-environment-15-e8a447d1-8ea2-47ba-9e35-79e731412987 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
162s autopkgtest [15:11:18]: testbed dpkg architecture: arm64
162s autopkgtest [15:11:18]: testbed apt version: 2.9.33
163s autopkgtest [15:11:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup
163s autopkgtest [15:11:19]: testbed release detected to be: None
164s autopkgtest [15:11:20]: updating testbed package index (apt update)
164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
165s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
165s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
165s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
165s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
165s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
165s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
165s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB]
165s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B]
166s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B]
166s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB]
166s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB]
166s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B]
166s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B]
166s Fetched 1094 kB in 2s (568 kB/s)
168s Reading package lists...
168s + lsb_release --codename --short
169s + RELEASE=plucky
169s + cat
169s + [ plucky != trusty ]
169s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
169s Reading package lists...
169s Building dependency tree...
169s Reading state information...
171s Calculating upgrade...
171s Calculating upgrade...
171s The following packages will be upgraded:
171s   python3-jinja2 strace
171s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
171s Need to get 608 kB of archives.
171s After this operation, 11.3 kB of additional disk space will be used.
171s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB]
173s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
173s Fetched 608 kB in 2s (375 kB/s)
174s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
174s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ...
174s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
174s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
174s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
174s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
174s Setting up strace (6.13+ds-1ubuntu1) ...
174s Processing triggers for man-db (2.13.0-1) ...
175s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
175s + /usr/lib/apt/apt-helper analyze-pattern ?true
175s + uname -r
175s + sed s/\./\\./g
175s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
175s + apt list ?obsolete
175s + tail -n+2
175s + cut -d/ -f1
175s + grep -v ^linux-.*6\.14\.0-10-generic.*
175s + obsolete_pkgs=linux-headers-6.11.0-8-generic
175s linux-headers-6.11.0-8
175s linux-image-6.11.0-8-generic
175s linux-modules-6.11.0-8-generic
175s linux-tools-6.11.0-8-generic
175s linux-tools-6.11.0-8
175s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
175s Reading package lists...
176s Building dependency tree...
176s Reading state information...
177s Solving dependencies...
177s The following packages will be REMOVED:
177s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
177s   libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
177s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
177s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic*
178s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded.
178s After this operation, 267 MB disk space will be freed.
178s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 117701 files and directories currently installed.)
178s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
178s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
178s Removing libpython3.12t64:arm64 (3.12.9-1) ...
178s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ...
178s Removing libnsl2:arm64 (1.3.0-3build3) ...
178s Removing libpython3.12-minimal:arm64 (3.12.9-1) ...
178s Removing libunwind8:arm64 (1.6.2-3.1) ...
178s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
179s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
181s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
181s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic
181s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic
181s /etc/kernel/postrm.d/initramfs-tools:
181s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
181s /etc/kernel/postrm.d/zz-flash-kernel:
181s flash-kernel: Kernel 6.11.0-8-generic has been removed.
181s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required.
181s /etc/kernel/postrm.d/zz-update-grub:
181s Sourcing file `/etc/default/grub'
181s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
181s Generating grub configuration file ...
181s Found linux image: /boot/vmlinuz-6.14.0-10-generic
181s Found initrd image: /boot/initrd.img-6.14.0-10-generic
182s Warning: os-prober will not be executed to detect other bootable partitions.
182s Systems on them will not be added to the GRUB boot configuration.
182s Check GRUB_DISABLE_OS_PROBER documentation entry.
182s Adding boot menu entry for UEFI Firmware Settings ...
182s done
182s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
182s Processing triggers for libc-bin (2.41-1ubuntu1) ...
182s (Reading database ... 
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(Reading database ... 81650 files and directories currently installed.)
182s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
182s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ...
182s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
183s + grep -q trusty /etc/lsb-release
183s + [ ! -d /usr/share/doc/unattended-upgrades ]
183s + [ ! -d /usr/share/doc/lxd ]
183s + [ ! -d /usr/share/doc/lxd-client ]
183s + [ ! -d /usr/share/doc/snapd ]
183s + type iptables
183s + cat
183s + chmod 755 /etc/rc.local
183s + . /etc/rc.local
183s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
183s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
183s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
183s + uname -m
183s + [ aarch64 = ppc64le ]
183s + [ -d /run/systemd/system ]
183s + systemd-detect-virt --quiet --vm
183s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
183s + cat
183s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
183s + echo COMPRESS=lz4
183s autopkgtest [15:11:39]: upgrading testbed (apt dist-upgrade and autopurge)
183s Reading package lists...
183s Building dependency tree...
183s Reading state information...
184s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
184s Starting 2 pkgProblemResolver with broken count: 0
184s Done
185s Entering ResolveByKeep
186s 
186s Calculating upgrade...
187s The following packages will be upgraded:
187s   libc-bin libc-dev-bin libc6 libc6-dev locales
187s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
187s Need to get 9530 kB of archives.
187s After this operation, 0 B of additional disk space will be used.
187s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB]
189s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB]
189s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB]
192s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB]
193s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB]
198s Preconfiguring packages ...
198s Fetched 9530 kB in 11s (869 kB/s)
198s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
198s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ...
198s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ...
198s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
198s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ...
199s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
199s Setting up libc6:arm64 (2.41-1ubuntu2) ...
199s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
199s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ...
199s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
199s Setting up libc-bin (2.41-1ubuntu2) ...
199s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81647 files and directories currently installed.)
199s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
199s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
199s Setting up locales (2.41-1ubuntu2) ...
200s Generating locales (this might take a while)...
202s   en_US.UTF-8... done
202s Generation complete.
202s Setting up libc-dev-bin (2.41-1ubuntu2) ...
202s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ...
202s Processing triggers for man-db (2.13.0-1) ...
203s Processing triggers for systemd (257.3-1ubuntu3) ...
204s Reading package lists...
204s Building dependency tree...
204s Reading state information...
204s Starting pkgProblemResolver with broken count: 0
204s Starting 2 pkgProblemResolver with broken count: 0
204s Done
205s Solving dependencies...
205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
206s autopkgtest [15:12:02]: rebooting testbed after setup commands that affected boot
230s autopkgtest [15:12:26]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025
232s autopkgtest [15:12:28]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-multtest
236s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-multtest 2.62.0-2 (dsc) [2165 B]
236s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-multtest 2.62.0-2 (tar) [1296 kB]
236s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-multtest 2.62.0-2 (diff) [3780 B]
236s gpgv: Signature made Sun Jan 12 02:47:26 2025 UTC
236s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
236s gpgv:                issuer "crusoe@debian.org"
236s gpgv: Can't check signature: No public key
236s dpkg-source: warning: cannot verify inline signature for ./r-bioc-multtest_2.62.0-2.dsc: no acceptable signature found
236s autopkgtest [15:12:32]: testing package r-bioc-multtest version 2.62.0-2
237s autopkgtest [15:12:33]: build not needed
242s autopkgtest [15:12:38]: test pkg-r-autopkgtest: preparing testbed
242s Reading package lists...
242s Building dependency tree...
242s Reading state information...
243s Starting pkgProblemResolver with broken count: 0
243s Starting 2 pkgProblemResolver with broken count: 0
243s Done
244s The following NEW packages will be installed:
244s   build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu
244s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
244s   g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
244s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14
244s   gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
244s   libasan8 libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1
244s   libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev
244s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
244s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
244s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
244s   liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
244s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
244s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
244s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
244s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1
244s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
244s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase
244s   r-bioc-biocgenerics r-bioc-multtest r-cran-lattice r-cran-mass r-cran-matrix
244s   r-cran-snow r-cran-survival unzip x11-common xdg-utils zip zlib1g-dev
244s 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded.
244s Need to get 150 MB of archives.
244s After this operation, 441 MB of additional disk space will be used.
244s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
245s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
245s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB]
254s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B]
254s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B]
254s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB]
254s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB]
254s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB]
255s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB]
255s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB]
257s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB]
258s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB]
261s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB]
262s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB]
263s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB]
265s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB]
284s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB]
284s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B]
284s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B]
284s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB]
286s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB]
296s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB]
296s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B]
296s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B]
296s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
296s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB]
296s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
297s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
297s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB]
297s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB]
298s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB]
298s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB]
298s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB]
299s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB]
308s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB]
308s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B]
308s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B]
308s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB]
309s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB]
309s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB]
309s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB]
309s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB]
309s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB]
309s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B]
309s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB]
309s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB]
310s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB]
310s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB]
310s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB]
310s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB]
310s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB]
310s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
310s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB]
310s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB]
320s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB]
321s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB]
321s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
321s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
321s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
321s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB]
323s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB]
327s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB]
327s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB]
327s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB]
327s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB]
327s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB]
328s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB]
328s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB]
328s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB]
328s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB]
328s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB]
328s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB]
329s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B]
329s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB]
329s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB]
329s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB]
330s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB]
330s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB]
330s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB]
330s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB]
330s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB]
331s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB]
331s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB]
331s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB]
331s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB]
331s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B]
331s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB]
332s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB]
332s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB]
332s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB]
332s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
332s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB]
350s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB]
350s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB]
350s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB]
350s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB]
350s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B]
350s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
350s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB]
351s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB]
352s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB]
353s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB]
356s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB]
363s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB]
369s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-multtest arm64 2.62.0-2 [842 kB]
369s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
369s Preconfiguring packages ...
369s Fetched 150 MB in 2min 1s (1238 kB/s)
369s Selecting previously unselected package libisl23:arm64.
369s (Reading database ... 
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(Reading database ... 81647 files and directories currently installed.)
369s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ...
369s Unpacking libisl23:arm64 (0.27-1) ...
369s Selecting previously unselected package libmpc3:arm64.
369s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ...
369s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
369s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
369s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
369s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
369s Selecting previously unselected package cpp-14.
369s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ...
369s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
369s Selecting previously unselected package cpp-aarch64-linux-gnu.
369s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
369s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
369s Selecting previously unselected package cpp.
369s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ...
369s Unpacking cpp (4:14.2.0-1ubuntu1) ...
369s Selecting previously unselected package libcc1-0:arm64.
369s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package libgomp1:arm64.
369s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package libitm1:arm64.
369s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package libasan8:arm64.
369s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package liblsan0:arm64.
369s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package libtsan2:arm64.
369s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package libubsan1:arm64.
369s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ...
369s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ...
369s Selecting previously unselected package libhwasan0:arm64.
369s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ...
370s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ...
370s Selecting previously unselected package libgcc-14-dev:arm64.
370s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
370s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package gcc-14.
370s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package gcc-aarch64-linux-gnu.
370s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
370s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
370s Selecting previously unselected package gcc.
370s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ...
370s Unpacking gcc (4:14.2.0-1ubuntu1) ...
370s Selecting previously unselected package libstdc++-14-dev:arm64.
370s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package g++-14-aarch64-linux-gnu.
370s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package g++-14.
370s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking g++-14 (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package g++-aarch64-linux-gnu.
370s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
370s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
370s Selecting previously unselected package g++.
370s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ...
370s Unpacking g++ (4:14.2.0-1ubuntu1) ...
370s Selecting previously unselected package build-essential.
370s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ...
370s Unpacking build-essential (12.10ubuntu1) ...
370s Selecting previously unselected package dctrl-tools.
370s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ...
370s Unpacking dctrl-tools (2.24-3build3) ...
370s Selecting previously unselected package fonts-dejavu-mono.
370s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ...
370s Unpacking fonts-dejavu-mono (2.37-8) ...
370s Selecting previously unselected package fonts-dejavu-core.
370s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ...
370s Unpacking fonts-dejavu-core (2.37-8) ...
370s Selecting previously unselected package fontconfig-config.
370s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ...
370s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
370s Selecting previously unselected package libfontconfig1:arm64.
370s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ...
370s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
370s Selecting previously unselected package fontconfig.
370s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ...
370s Unpacking fontconfig (2.15.0-2ubuntu1) ...
370s Selecting previously unselected package libgfortran5:arm64.
370s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ...
370s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ...
370s Selecting previously unselected package libgfortran-14-dev:arm64.
370s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package gfortran-14-aarch64-linux-gnu.
370s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package gfortran-14.
370s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ...
370s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
370s Selecting previously unselected package gfortran-aarch64-linux-gnu.
370s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ...
370s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
370s Selecting previously unselected package gfortran.
370s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ...
370s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
370s Selecting previously unselected package icu-devtools.
370s Preparing to unpack .../037-icu-devtools_76.1-1ubuntu2_arm64.deb ...
370s Unpacking icu-devtools (76.1-1ubuntu2) ...
370s Selecting previously unselected package libblas3:arm64.
370s Preparing to unpack .../038-libblas3_3.12.1-2_arm64.deb ...
370s Unpacking libblas3:arm64 (3.12.1-2) ...
370s Selecting previously unselected package libblas-dev:arm64.
370s Preparing to unpack .../039-libblas-dev_3.12.1-2_arm64.deb ...
370s Unpacking libblas-dev:arm64 (3.12.1-2) ...
370s Selecting previously unselected package libbz2-dev:arm64.
370s Preparing to unpack .../040-libbz2-dev_1.0.8-6_arm64.deb ...
370s Unpacking libbz2-dev:arm64 (1.0.8-6) ...
371s Selecting previously unselected package libpixman-1-0:arm64.
371s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_arm64.deb ...
371s Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
371s Selecting previously unselected package libxcb-render0:arm64.
371s Preparing to unpack .../042-libxcb-render0_1.17.0-2_arm64.deb ...
371s Unpacking libxcb-render0:arm64 (1.17.0-2) ...
371s Selecting previously unselected package libxcb-shm0:arm64.
371s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_arm64.deb ...
371s Unpacking libxcb-shm0:arm64 (1.17.0-2) ...
371s Selecting previously unselected package libxrender1:arm64.
371s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ...
371s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ...
371s Selecting previously unselected package libcairo2:arm64.
371s Preparing to unpack .../045-libcairo2_1.18.2-2_arm64.deb ...
371s Unpacking libcairo2:arm64 (1.18.2-2) ...
371s Selecting previously unselected package libdatrie1:arm64.
371s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_arm64.deb ...
371s Unpacking libdatrie1:arm64 (0.2.13-3build1) ...
371s Selecting previously unselected package libdeflate0:arm64.
371s Preparing to unpack .../047-libdeflate0_1.23-1_arm64.deb ...
371s Unpacking libdeflate0:arm64 (1.23-1) ...
371s Selecting previously unselected package libdeflate-dev:arm64.
371s Preparing to unpack .../048-libdeflate-dev_1.23-1_arm64.deb ...
371s Unpacking libdeflate-dev:arm64 (1.23-1) ...
371s Selecting previously unselected package libgraphite2-3:arm64.
371s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ...
371s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
371s Selecting previously unselected package libharfbuzz0b:arm64.
371s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_arm64.deb ...
371s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
371s Selecting previously unselected package x11-common.
371s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu3_all.deb ...
371s Unpacking x11-common (1:7.7+23ubuntu3) ...
371s Selecting previously unselected package libice6:arm64.
371s Preparing to unpack .../052-libice6_2%3a1.1.1-1_arm64.deb ...
371s Unpacking libice6:arm64 (2:1.1.1-1) ...
371s Selecting previously unselected package libicu-dev:arm64.
371s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_arm64.deb ...
371s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ...
372s Selecting previously unselected package libjpeg-turbo8:arm64.
374s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ...
374s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
375s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
375s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ...
375s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
375s Selecting previously unselected package libjpeg8:arm64.
375s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_arm64.deb ...
375s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
375s Selecting previously unselected package libjpeg8-dev:arm64.
375s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
375s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
375s Selecting previously unselected package libjpeg-dev:arm64.
375s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
375s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
375s Selecting previously unselected package liblapack3:arm64.
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376s Selecting previously unselected package r-cran-lattice.
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376s Unpacking r-cran-lattice (0.22-6-1) ...
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376s Unpacking r-cran-survival (3.8-3-1) ...
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376s Unpacking r-cran-mass (7.3-64-1) ...
376s Selecting previously unselected package r-bioc-multtest.
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376s Unpacking r-bioc-multtest (2.62.0-2) ...
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376s Preparing to unpack .../105-r-cran-snow_1%3a0.4.4-2_all.deb ...
376s Unpacking r-cran-snow (1:0.4.4-2) ...
376s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ...
376s Setting up libpixman-1-0:arm64 (0.44.0-3) ...
376s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
376s Setting up libncurses-dev:arm64 (6.5+20250216-2) ...
376s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ...
376s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ...
376s Setting up libdatrie1:arm64 (0.2.13-3build1) ...
376s Setting up libxcb-render0:arm64 (1.17.0-2) ...
376s Setting up unzip (6.0-28ubuntu6) ...
376s Setting up x11-common (1:7.7+23ubuntu3) ...
377s Setting up libdeflate0:arm64 (1.23-1) ...
377s Setting up libxcb-shm0:arm64 (1.17.0-2) ...
377s Setting up libreadline-dev:arm64 (8.2-6) ...
377s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ...
377s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ...
377s Setting up libpcre2-16-0:arm64 (10.45-1) ...
377s Setting up zip (3.0-14ubuntu2) ...
377s Setting up libpcre2-32-0:arm64 (10.45-1) ...
377s Setting up libblas3:arm64 (3.12.1-2) ...
377s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
377s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ...
377s Setting up libpkgconf3:arm64 (1.8.1-4) ...
377s Setting up fonts-dejavu-mono (2.37-8) ...
377s Setting up libmpc3:arm64 (1.3.1-1build2) ...
377s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ...
377s Setting up icu-devtools (76.1-1ubuntu2) ...
377s Setting up fonts-dejavu-core (2.37-8) ...
377s Setting up pkgconf-bin (1.8.1-4) ...
379s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ...
379s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ...
379s Setting up libwebp7:arm64 (1.5.0-0.1) ...
379s Setting up liblzma-dev:arm64 (5.6.4-1) ...
379s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ...
379s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
379s Setting up libpcre2-posix3:arm64 (10.45-1) ...
379s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ...
379s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ...
379s Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
379s Setting up libthai-data (0.1.29-2build1) ...
379s Setting up libxss1:arm64 (1:1.2.3-1build3) ...
379s Setting up libpaper2:arm64 (2.2.5-0.3) ...
379s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ...
379s Setting up libisl23:arm64 (0.27-1) ...
379s Setting up libdeflate-dev:arm64 (1.23-1) ...
379s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ...
379s Setting up xdg-utils (1.2.1-2ubuntu1) ...
379s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
379s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ...
379s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ...
379s Setting up libblas-dev:arm64 (3.12.1-2) ...
379s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
379s Setting up dctrl-tools (2.24-3build3) ...
379s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ...
379s Setting up libbz2-dev:arm64 (1.0.8-6) ...
379s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
379s Setting up libice6:arm64 (2:1.1.1-1) ...
379s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ...
379s Setting up liblapack3:arm64 (3.12.1-2) ...
379s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
379s Setting up libpcre2-dev:arm64 (10.45-1) ...
379s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
379s Setting up libpng-dev:arm64 (1.6.47-1) ...
379s Setting up libpaper-utils (2.2.5-0.3) ...
379s Setting up pkgconf:arm64 (1.8.1-4) ...
379s Setting up libthai0:arm64 (0.1.29-2build1) ...
379s Setting up liblapack-dev:arm64 (3.12.1-2) ...
379s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
379s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
379s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ...
379s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ...
379s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ...
379s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
379s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ...
379s Setting up libsm6:arm64 (2:1.2.4-1) ...
379s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ...
379s Setting up fontconfig (2.15.0-2ubuntu1) ...
380s Regenerating fonts cache... done.
380s Setting up libxft2:arm64 (2.3.6-1build1) ...
380s Setting up libtk8.6:arm64 (8.6.16-1) ...
380s Setting up libpango-1.0-0:arm64 (1.56.2-1) ...
380s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
380s Setting up libcairo2:arm64 (1.18.2-2) ...
380s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
380s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ...
380s Setting up cpp-14 (14.2.0-17ubuntu3) ...
380s Setting up cpp (4:14.2.0-1ubuntu1) ...
380s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
380s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ...
380s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ...
380s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
380s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
380s Setting up gcc-14 (14.2.0-17ubuntu3) ...
380s Setting up r-base-core (4.4.3-1) ...
380s Creating config file /etc/R/Renviron with new version
381s Setting up r-cran-lattice (0.22-6-1) ...
381s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ...
381s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
381s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ...
381s Setting up g++-14 (14.2.0-17ubuntu3) ...
381s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
381s Setting up r-bioc-biocgenerics (0.52.0-2) ...
381s Setting up r-cran-mass (7.3-64-1) ...
381s Setting up r-cran-snow (1:0.4.4-2) ...
381s Setting up gcc (4:14.2.0-1ubuntu1) ...
381s Setting up r-bioc-biobase (2.66.0-2) ...
381s Setting up r-cran-matrix (1.7-3-1) ...
381s Setting up g++ (4:14.2.0-1ubuntu1) ...
381s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
381s Setting up build-essential (12.10ubuntu1) ...
381s Setting up r-cran-survival (3.8-3-1) ...
381s Setting up gfortran (4:14.2.0-1ubuntu1) ...
381s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
381s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
381s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
381s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
381s Setting up r-bioc-multtest (2.62.0-2) ...
381s Setting up r-base-dev (4.4.3-1) ...
381s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
381s Processing triggers for libc-bin (2.41-1ubuntu2) ...
381s Processing triggers for man-db (2.13.0-1) ...
383s Processing triggers for install-info (7.1.1-1) ...
632s autopkgtest [15:19:08]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
632s autopkgtest [15:19:08]: test pkg-r-autopkgtest: [-----------------------
690s Test: Try to load the R library multtest
691s 
691s R version 4.4.3 (2025-02-28) -- "Trophy Case"
691s Copyright (C) 2025 The R Foundation for Statistical Computing
691s Platform: aarch64-unknown-linux-gnu
691s 
691s R is free software and comes with ABSOLUTELY NO WARRANTY.
691s You are welcome to redistribute it under certain conditions.
691s Type 'license()' or 'licence()' for distribution details.
691s 
691s R is a collaborative project with many contributors.
691s Type 'contributors()' for more information and
691s 'citation()' on how to cite R or R packages in publications.
691s 
691s Type 'demo()' for some demos, 'help()' for on-line help, or
691s 'help.start()' for an HTML browser interface to help.
691s Type 'q()' to quit R.
691s 
691s > library('multtest')
691s Loading required package: BiocGenerics
691s 
691s Attaching package: ‘BiocGenerics’
691s 
691s The following objects are masked from ‘package:stats’:
691s 
691s     IQR, mad, sd, var, xtabs
691s 
691s The following objects are masked from ‘package:base’:
691s 
691s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
691s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
691s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
691s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
691s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
691s     table, tapply, union, unique, unsplit, which.max, which.min
691s 
691s Loading required package: Biobase
691s Welcome to Bioconductor
691s 
691s     Vignettes contain introductory material; view with
691s     'browseVignettes()'. To cite Bioconductor, see
691s     'citation("Biobase")', and for packages 'citation("pkgname")'.
691s 
691s > 
691s > 
692s Other tests are currently unsupported!
692s They will be progressively added.
693s autopkgtest [15:20:09]: test pkg-r-autopkgtest: -----------------------]
782s autopkgtest [15:21:38]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
782s pkg-r-autopkgtest    PASS
788s autopkgtest [15:21:44]: @@@@@@@@@@@@@@@@@@@@ summary
788s pkg-r-autopkgtest    PASS
901s nova [W] Using flock in prodstack6-arm64
901s flock: timeout while waiting to get lock
901s Creating nova instance adt-plucky-arm64-r-bioc-multtest-20250315-150836-juju-7f2275-prod-proposed-migration-environment-15-e8a447d1-8ea2-47ba-9e35-79e731412987 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)...
901s nova [W] Timed out waiting for 198af69a-5bfd-4de9-9547-56c17b8d3d12 to get deleted.