0s autopkgtest [15:07:40]: starting date and time: 2025-03-15 15:07:40+0000 0s autopkgtest [15:07:40]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:07:40]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.asfxtwhv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-hdf5array --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-6.secgroup --name adt-plucky-arm64-r-bioc-hdf5array-20250315-150740-juju-7f2275-prod-proposed-migration-environment-2-289aad02-2706-441f-aa44-fa20c7ed581a --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 197s autopkgtest [15:10:57]: testbed dpkg architecture: arm64 198s autopkgtest [15:10:58]: testbed apt version: 2.9.33 198s autopkgtest [15:10:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 198s autopkgtest [15:10:58]: testbed release detected to be: None 199s autopkgtest [15:10:59]: updating testbed package index (apt update) 199s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 200s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 200s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 200s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 200s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 200s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 200s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 201s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 201s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 201s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 201s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 201s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 201s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 201s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 202s Fetched 1094 kB in 2s (597 kB/s) 203s Reading package lists... 203s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Calculating upgrade... 205s Calculating upgrade... 205s The following packages will be upgraded: 205s python3-jinja2 strace 206s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 608 kB of archives. 206s After this operation, 11.3 kB of additional disk space will be used. 206s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 206s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 207s Fetched 608 kB in 1s (619 kB/s) 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 208s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 208s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 208s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 208s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 208s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 208s Setting up strace (6.13+ds-1ubuntu1) ... 208s Processing triggers for man-db (2.13.0-1) ... 209s Reading package lists... 210s Building dependency tree... 210s Reading state information... 211s Solving dependencies... 212s The following packages will be REMOVED: 212s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 212s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 212s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 212s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 213s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 213s After this operation, 267 MB disk space will be freed. 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 213s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 213s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 213s Removing libpython3.12t64:arm64 (3.12.9-1) ... 213s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 213s Removing libnsl2:arm64 (1.3.0-3build3) ... 213s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 213s Removing libunwind8:arm64 (1.6.2-3.1) ... 213s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 214s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 216s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 216s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 216s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 216s /etc/kernel/postrm.d/initramfs-tools: 216s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 216s /etc/kernel/postrm.d/zz-flash-kernel: 216s flash-kernel: Kernel 6.11.0-8-generic has been removed. 216s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 217s /etc/kernel/postrm.d/zz-update-grub: 217s Sourcing file `/etc/default/grub' 217s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 217s Generating grub configuration file ... 217s Found linux image: /boot/vmlinuz-6.14.0-10-generic 217s Found initrd image: /boot/initrd.img-6.14.0-10-generic 218s Warning: os-prober will not be executed to detect other bootable partitions. 218s Systems on them will not be added to the GRUB boot configuration. 218s Check GRUB_DISABLE_OS_PROBER documentation entry. 218s Adding boot menu entry for UEFI Firmware Settings ... 218s done 218s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 218s Processing triggers for libc-bin (2.41-1ubuntu1) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 218s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 219s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 219s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 219s autopkgtest [15:11:19]: upgrading testbed (apt dist-upgrade and autopurge) 219s Reading package lists... 220s Building dependency tree... 220s Reading state information... 221s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 221s Starting 2 pkgProblemResolver with broken count: 0 221s Done 223s Entering ResolveByKeep 224s 224s Calculating upgrade... 225s The following packages will be upgraded: 225s libc-bin libc-dev-bin libc6 libc6-dev locales 225s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 9530 kB of archives. 225s After this operation, 0 B of additional disk space will be used. 225s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 227s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 227s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 231s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 232s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 237s Preconfiguring packages ... 237s Fetched 9530 kB in 11s (852 kB/s) 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 237s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 237s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 238s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 238s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 238s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 238s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 238s Setting up libc6:arm64 (2.41-1ubuntu2) ... 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 239s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 239s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 239s Setting up libc-bin (2.41-1ubuntu2) ... 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 239s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 239s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 239s Setting up locales (2.41-1ubuntu2) ... 241s Generating locales (this might take a while)... 243s en_US.UTF-8... done 243s Generation complete. 243s Setting up libc-dev-bin (2.41-1ubuntu2) ... 243s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 243s Processing triggers for man-db (2.13.0-1) ... 244s Processing triggers for systemd (257.3-1ubuntu3) ... 245s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s Solving dependencies... 249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 249s autopkgtest [15:11:49]: rebooting testbed after setup commands that affected boot 272s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 279s autopkgtest [15:12:19]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 282s autopkgtest [15:12:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-hdf5array 291s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hdf5array 1.34.0-2build1 (dsc) [2379 B] 291s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hdf5array 1.34.0-2build1 (tar) [8107 kB] 291s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-hdf5array 1.34.0-2build1 (diff) [6648 B] 291s gpgv: Signature made Tue Jan 28 09:40:27 2025 UTC 291s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 291s gpgv: Can't check signature: No public key 291s dpkg-source: warning: cannot verify inline signature for ./r-bioc-hdf5array_1.34.0-2build1.dsc: no acceptable signature found 292s autopkgtest [15:12:32]: testing package r-bioc-hdf5array version 1.34.0-2build1 293s autopkgtest [15:12:33]: build not needed 296s autopkgtest [15:12:36]: test pkg-r-autopkgtest: preparing testbed 296s Reading package lists... 297s Building dependency tree... 297s Reading state information... 298s Starting pkgProblemResolver with broken count: 0 298s Starting 2 pkgProblemResolver with broken count: 0 298s Done 300s The following NEW packages will be installed: 300s build-essential comerr-dev cpp cpp-14 cpp-14-aarch64-linux-gnu 300s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 300s fonts-dejavu-core fonts-dejavu-mono g++ g++-14 g++-14-aarch64-linux-gnu 300s g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu 300s gcc-aarch64-linux-gnu gfortran gfortran-14 gfortran-14-aarch64-linux-gnu 300s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools krb5-multidev 300s libaec-dev libaec0 libasan8 libblas-dev libblas3 libblosc1 libboost-dev 300s libboost1.83-dev libbrotli-dev libbz2-dev libcairo2 libcc1-0 300s libcurl4-openssl-dev libdatrie1 libdeflate-dev libdeflate0 libevent-2.1-7t64 300s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgmp-dev 300s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 300s libgomp1 libgraphite2-3 libgssrpc4t64 libharfbuzz0b libhdf5-310 300s libhdf5-cpp-310 libhdf5-dev libhdf5-fortran-310 libhdf5-hl-310 300s libhdf5-hl-cpp-310 libhdf5-hl-fortran-310 libhwasan0 libice6 libicu-dev 300s libidn2-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 300s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libkadm5clnt-mit12 300s libkadm5srv-mit12 libkdb5-10t64 libkrb5-dev liblapack-dev liblapack3 300s libldap-dev liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev 300s libnghttp2-dev libp11-kit-dev libpango-1.0-0 libpangocairo-1.0-0 300s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 300s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpsl-dev 300s libreadline-dev librtmp-dev libsharpyuv0 libsm6 libsnappy1v5 libssh2-1-dev 300s libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev libtcl8.6 libthai-data 300s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libunbound8 300s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 300s libzstd-dev littler nettle-dev pkg-r-autopkgtest pkgconf pkgconf-bin 300s r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 300s r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 300s r-bioc-biocio r-bioc-biocparallel r-bioc-biocversion r-bioc-biostrings 300s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-experimenthub 300s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 300s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 300s r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 300s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib 300s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 300s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 300s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 300s r-cran-abind r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-bit 300s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli 300s r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 300s r-cran-dbplyr r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock 300s r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics 300s r-cran-glue r-cran-httr r-cran-jsonlite r-cran-lambda.r r-cran-lattice 300s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 300s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 300s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-purrr 300s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 300s r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow 300s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 300s r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr 300s r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils zip 300s zlib1g-dev 301s 0 upgraded, 245 newly installed, 0 to remove and 0 not upgraded. 301s Need to get 278 MB of archives. 301s After this operation, 832 MB of additional disk space will be used. 301s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 301s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 301s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 311s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 311s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 311s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 311s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 311s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 311s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 311s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 314s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 315s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 317s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 318s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 320s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 322s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 340s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 341s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 341s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 341s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 343s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 353s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 353s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 353s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 353s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 353s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 353s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 354s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 355s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 355s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 355s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 355s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 355s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 356s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 366s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 366s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 366s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 366s Get:38 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-helpers arm64 1.14.5+repack-3 [17.0 kB] 366s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 366s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 comerr-dev arm64 2.1-1.47.2-1ubuntu1 [45.1 kB] 366s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libgssrpc4t64 arm64 1.21.3-4ubuntu2 [58.5 kB] 366s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4ubuntu2 [40.3 kB] 366s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 libkdb5-10t64 arm64 1.21.3-4ubuntu2 [40.9 kB] 366s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libkadm5srv-mit12 arm64 1.21.3-4ubuntu2 [53.8 kB] 366s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 krb5-multidev arm64 1.21.3-4ubuntu2 [125 kB] 366s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 366s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 366s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 366s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 366s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 366s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 376s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 376s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build4 [359 kB] 376s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 376s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 376s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 376s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 376s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 376s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 377s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 377s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libkrb5-dev arm64 1.21.3-4ubuntu2 [11.9 kB] 377s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libldap-dev arm64 2.6.9+dfsg-1~exp2ubuntu1 [318 kB] 377s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 377s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 377s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 377s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 377s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 377s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3ubuntu1 [10.1 kB] 377s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3ubuntu1 [335 kB] 378s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 378s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.22.0-1ubuntu1 [437 kB] 378s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.9-2ubuntu2 [24.4 kB] 378s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.9-2ubuntu2 [24.4 kB] 378s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu3 [23.5 kB] 378s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [91.1 kB] 378s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10.1-1 [1190 kB] 379s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.9-2ubuntu2 [1143 kB] 380s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 381s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 381s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.4.1-1ubuntu1 [3287 kB] 384s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 385s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [353 kB] 385s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.12.1-3ubuntu1 [506 kB] 385s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 385s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 385s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 385s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 386s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 386s Get:89 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 386s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-310 arm64 1.14.5+repack-3 [1331 kB] 387s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [117 kB] 387s Get:92 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [109 kB] 387s Get:93 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [59.8 kB] 387s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [31.8 kB] 387s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [11.6 kB] 387s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 387s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 388s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 388s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 388s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 388s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 388s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-dev arm64 1.14.5+repack-3 [3581 kB] 391s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 391s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 391s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 401s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 403s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 406s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 407s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 407s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 407s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 407s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 407s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 408s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 408s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 408s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 408s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 408s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 408s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 408s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 409s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 409s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 409s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 410s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 410s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 411s Get:126 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 411s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 411s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 411s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 411s Get:130 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 411s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 412s Get:132 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 412s Get:133 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 413s Get:134 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 413s Get:135 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 413s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 437s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 437s Get:138 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 437s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 437s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 437s Get:141 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 438s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 438s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 438s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 441s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 443s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 446s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 446s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 447s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 448s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 449s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 451s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 451s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 451s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 452s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 452s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 453s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 453s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 453s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 453s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 453s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 453s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 454s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 455s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 455s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 455s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 455s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 455s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 456s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 456s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 456s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 456s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 456s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 457s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 457s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 467s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 471s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 471s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 485s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 485s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 490s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 491s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 492s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 493s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 494s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 494s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 494s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 494s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 495s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-3 [420 kB] 495s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 496s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyselect arm64 1.2.1+dfsg-1 [222 kB] 496s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dplyr arm64 1.1.4-4 [1534 kB] 497s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-purrr arm64 1.0.4-1 [552 kB] 498s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringi arm64 1.8.4-1build1 [902 kB] 498s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 499s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 500s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 501s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 501s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 501s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 502s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 502s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 502s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 502s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB] 502s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 503s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 503s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 503s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 503s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 504s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 504s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 504s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 504s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 505s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 506s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 509s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 509s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 510s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 510s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 510s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 512s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 513s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 513s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 515s Get:224 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsematrixstats arm64 1.18.0+dfsg-2 [853 kB] 516s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedmatrixstats all 1.28.1+ds-1 [502 kB] 516s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-experimenthub all 2.14.0+ds-2 [84.6 kB] 516s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-survival arm64 3.8-3-1 [8213 kB] 522s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genefilter arm64 1.88.0-2 [1241 kB] 523s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 524s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 525s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 525s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 526s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 529s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 530s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 531s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 531s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 531s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 535s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 535s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhdf5lib arm64 1.28.0+dfsg-2build1 [97.4 kB] 535s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhdf5filters arm64 1.18.0+dfsg-2 [135 kB] 535s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhdf5 arm64 2.50.2+dfsg-1build1 [819 kB] 536s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-hdf5array arm64 1.34.0-2build1 [8783 kB] 542s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-singlecellexperiment all 1.28.1+ds-2 [829 kB] 543s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 544s Preconfiguring packages ... 545s Fetched 278 MB in 4min 3s (1144 kB/s) 545s Selecting previously unselected package libisl23:arm64. 545s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 545s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 545s Unpacking libisl23:arm64 (0.27-1) ... 545s Selecting previously unselected package libmpc3:arm64. 545s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 545s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 545s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 545s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 545s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 545s Selecting previously unselected package cpp-14. 545s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 545s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 545s Selecting previously unselected package cpp-aarch64-linux-gnu. 545s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 545s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 546s Selecting previously unselected package cpp. 546s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 546s Unpacking cpp (4:14.2.0-1ubuntu1) ... 546s Selecting previously unselected package libcc1-0:arm64. 546s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libgomp1:arm64. 546s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libitm1:arm64. 546s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libasan8:arm64. 546s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package liblsan0:arm64. 546s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libtsan2:arm64. 546s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libubsan1:arm64. 546s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libhwasan0:arm64. 546s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 546s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 546s Selecting previously unselected package libgcc-14-dev:arm64. 546s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 546s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 547s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 547s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 547s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 547s Selecting previously unselected package gcc-14. 547s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 547s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 547s Selecting previously unselected package gcc-aarch64-linux-gnu. 547s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 547s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 547s Selecting previously unselected package gcc. 547s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 547s Unpacking gcc (4:14.2.0-1ubuntu1) ... 547s Selecting previously unselected package libstdc++-14-dev:arm64. 547s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 547s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 548s Selecting previously unselected package g++-14-aarch64-linux-gnu. 548s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 548s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 548s Selecting previously unselected package g++-14. 548s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 548s Unpacking g++-14 (14.2.0-17ubuntu3) ... 548s Selecting previously unselected package g++-aarch64-linux-gnu. 548s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 548s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 548s Selecting previously unselected package g++. 548s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 548s Unpacking g++ (4:14.2.0-1ubuntu1) ... 548s Selecting previously unselected package build-essential. 548s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 548s Unpacking build-essential (12.10ubuntu1) ... 548s Selecting previously unselected package dctrl-tools. 548s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 548s Unpacking dctrl-tools (2.24-3build3) ... 548s Selecting previously unselected package fonts-dejavu-mono. 548s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 548s Unpacking fonts-dejavu-mono (2.37-8) ... 549s Selecting previously unselected package fonts-dejavu-core. 549s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 549s Unpacking fonts-dejavu-core (2.37-8) ... 549s Selecting previously unselected package fontconfig-config. 549s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 549s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 549s Selecting previously unselected package libfontconfig1:arm64. 549s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 549s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 549s Selecting previously unselected package fontconfig. 549s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 549s Unpacking fontconfig (2.15.0-2ubuntu1) ... 549s Selecting previously unselected package libgfortran5:arm64. 549s Preparing to unpack .../031-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 549s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 549s Selecting previously unselected package libgfortran-14-dev:arm64. 550s Preparing to unpack .../032-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 550s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 550s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 550s Preparing to unpack .../033-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 550s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 550s Selecting previously unselected package gfortran-14. 550s Preparing to unpack .../034-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 550s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 550s Selecting previously unselected package gfortran-aarch64-linux-gnu. 550s Preparing to unpack .../035-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 550s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 550s Selecting previously unselected package gfortran. 550s Preparing to unpack .../036-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 550s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 550s Selecting previously unselected package hdf5-helpers. 550s Preparing to unpack .../037-hdf5-helpers_1.14.5+repack-3_arm64.deb ... 550s Unpacking hdf5-helpers (1.14.5+repack-3) ... 550s Selecting previously unselected package icu-devtools. 550s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_arm64.deb ... 550s Unpacking icu-devtools (76.1-1ubuntu2) ... 550s Selecting previously unselected package comerr-dev:arm64. 550s Preparing to unpack .../039-comerr-dev_2.1-1.47.2-1ubuntu1_arm64.deb ... 550s Unpacking comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ... 550s Selecting previously unselected package libgssrpc4t64:arm64. 550s Preparing to unpack .../040-libgssrpc4t64_1.21.3-4ubuntu2_arm64.deb ... 550s Unpacking libgssrpc4t64:arm64 (1.21.3-4ubuntu2) ... 550s Selecting previously unselected package libkadm5clnt-mit12:arm64. 551s Preparing to unpack .../041-libkadm5clnt-mit12_1.21.3-4ubuntu2_arm64.deb ... 551s Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu2) ... 551s Selecting previously unselected package libkdb5-10t64:arm64. 551s Preparing to unpack .../042-libkdb5-10t64_1.21.3-4ubuntu2_arm64.deb ... 551s Unpacking libkdb5-10t64:arm64 (1.21.3-4ubuntu2) ... 551s Selecting previously unselected package libkadm5srv-mit12:arm64. 551s Preparing to unpack .../043-libkadm5srv-mit12_1.21.3-4ubuntu2_arm64.deb ... 551s Unpacking libkadm5srv-mit12:arm64 (1.21.3-4ubuntu2) ... 551s Selecting previously unselected package krb5-multidev:arm64. 551s Preparing to unpack .../044-krb5-multidev_1.21.3-4ubuntu2_arm64.deb ... 551s Unpacking krb5-multidev:arm64 (1.21.3-4ubuntu2) ... 551s Selecting previously unselected package libaec0:arm64. 551s Preparing to unpack .../045-libaec0_1.1.3-1_arm64.deb ... 551s Unpacking libaec0:arm64 (1.1.3-1) ... 551s Selecting previously unselected package libblas3:arm64. 551s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 551s Unpacking libblas3:arm64 (3.12.1-2) ... 551s Selecting previously unselected package libblas-dev:arm64. 551s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 551s Unpacking libblas-dev:arm64 (3.12.1-2) ... 551s Selecting previously unselected package libsnappy1v5:arm64. 551s Preparing to unpack .../048-libsnappy1v5_1.2.1-1_arm64.deb ... 551s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 551s Selecting previously unselected package libblosc1:arm64. 551s Preparing to unpack .../049-libblosc1_1.21.5+ds-1build1_arm64.deb ... 551s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 551s Selecting previously unselected package libboost1.83-dev:arm64. 551s Preparing to unpack .../050-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 551s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 553s Selecting previously unselected package libboost-dev:arm64. 553s Preparing to unpack .../051-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 553s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 553s Selecting previously unselected package libbrotli-dev:arm64. 553s Preparing to unpack .../052-libbrotli-dev_1.1.0-2build4_arm64.deb ... 553s Unpacking libbrotli-dev:arm64 (1.1.0-2build4) ... 553s Selecting previously unselected package libbz2-dev:arm64. 554s Preparing to unpack .../053-libbz2-dev_1.0.8-6_arm64.deb ... 554s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 554s Selecting previously unselected package libpixman-1-0:arm64. 554s Preparing to unpack .../054-libpixman-1-0_0.44.0-3_arm64.deb ... 554s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 554s Selecting previously unselected package libxcb-render0:arm64. 554s Preparing to unpack .../055-libxcb-render0_1.17.0-2_arm64.deb ... 554s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 554s Selecting previously unselected package libxcb-shm0:arm64. 554s Preparing to unpack .../056-libxcb-shm0_1.17.0-2_arm64.deb ... 554s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 554s Selecting previously unselected package libxrender1:arm64. 554s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 554s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 554s Selecting previously unselected package libcairo2:arm64. 554s Preparing to unpack .../058-libcairo2_1.18.2-2_arm64.deb ... 554s Unpacking libcairo2:arm64 (1.18.2-2) ... 554s Selecting previously unselected package libidn2-dev:arm64. 554s Preparing to unpack .../059-libidn2-dev_2.3.7-2build2_arm64.deb ... 554s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 554s Selecting previously unselected package libkrb5-dev:arm64. 554s Preparing to unpack .../060-libkrb5-dev_1.21.3-4ubuntu2_arm64.deb ... 554s Unpacking libkrb5-dev:arm64 (1.21.3-4ubuntu2) ... 554s Selecting previously unselected package libldap-dev:arm64. 554s Preparing to unpack .../061-libldap-dev_2.6.9+dfsg-1~exp2ubuntu1_arm64.deb ... 554s Unpacking libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ... 554s Selecting previously unselected package libpkgconf3:arm64. 554s Preparing to unpack .../062-libpkgconf3_1.8.1-4_arm64.deb ... 554s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 554s Selecting previously unselected package pkgconf-bin. 554s Preparing to unpack .../063-pkgconf-bin_1.8.1-4_arm64.deb ... 554s Unpacking pkgconf-bin (1.8.1-4) ... 554s Selecting previously unselected package pkgconf:arm64. 554s Preparing to unpack .../064-pkgconf_1.8.1-4_arm64.deb ... 554s Unpacking pkgconf:arm64 (1.8.1-4) ... 554s Selecting previously unselected package libnghttp2-dev:arm64. 554s Preparing to unpack .../065-libnghttp2-dev_1.64.0-1_arm64.deb ... 554s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... 554s Selecting previously unselected package libpsl-dev:arm64. 554s Preparing to unpack .../066-libpsl-dev_0.21.2-1.1build1_arm64.deb ... 554s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ... 554s Selecting previously unselected package libgmpxx4ldbl:arm64. 554s Preparing to unpack .../067-libgmpxx4ldbl_2%3a6.3.0+dfsg-3ubuntu1_arm64.deb ... 554s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 554s Selecting previously unselected package libgmp-dev:arm64. 555s Preparing to unpack .../068-libgmp-dev_2%3a6.3.0+dfsg-3ubuntu1_arm64.deb ... 555s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 555s Selecting previously unselected package libevent-2.1-7t64:arm64. 555s Preparing to unpack .../069-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 555s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 555s Selecting previously unselected package libunbound8:arm64. 555s Preparing to unpack .../070-libunbound8_1.22.0-1ubuntu1_arm64.deb ... 555s Unpacking libunbound8:arm64 (1.22.0-1ubuntu1) ... 555s Selecting previously unselected package libgnutls-dane0t64:arm64. 555s Preparing to unpack .../071-libgnutls-dane0t64_3.8.9-2ubuntu2_arm64.deb ... 555s Unpacking libgnutls-dane0t64:arm64 (3.8.9-2ubuntu2) ... 555s Selecting previously unselected package libgnutls-openssl27t64:arm64. 555s Preparing to unpack .../072-libgnutls-openssl27t64_3.8.9-2ubuntu2_arm64.deb ... 555s Unpacking libgnutls-openssl27t64:arm64 (3.8.9-2ubuntu2) ... 555s Selecting previously unselected package libp11-kit-dev:arm64. 555s Preparing to unpack .../073-libp11-kit-dev_0.25.5-2ubuntu3_arm64.deb ... 555s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu3) ... 555s Selecting previously unselected package libtasn1-6-dev:arm64. 555s Preparing to unpack .../074-libtasn1-6-dev_4.20.0-2_arm64.deb ... 555s Unpacking libtasn1-6-dev:arm64 (4.20.0-2) ... 555s Selecting previously unselected package nettle-dev:arm64. 555s Preparing to unpack .../075-nettle-dev_3.10.1-1_arm64.deb ... 555s Unpacking nettle-dev:arm64 (3.10.1-1) ... 555s Selecting previously unselected package libgnutls28-dev:arm64. 555s Preparing to unpack .../076-libgnutls28-dev_3.8.9-2ubuntu2_arm64.deb ... 555s Unpacking libgnutls28-dev:arm64 (3.8.9-2ubuntu2) ... 555s Selecting previously unselected package zlib1g-dev:arm64. 555s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 555s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 555s Selecting previously unselected package librtmp-dev:arm64. 555s Preparing to unpack .../078-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ... 555s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 555s Selecting previously unselected package libssl-dev:arm64. 555s Preparing to unpack .../079-libssl-dev_3.4.1-1ubuntu1_arm64.deb ... 555s Unpacking libssl-dev:arm64 (3.4.1-1ubuntu1) ... 556s Selecting previously unselected package libssh2-1-dev:arm64. 556s Preparing to unpack .../080-libssh2-1-dev_1.11.1-1_arm64.deb ... 556s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... 556s Selecting previously unselected package libzstd-dev:arm64. 556s Preparing to unpack .../081-libzstd-dev_1.5.6+dfsg-2_arm64.deb ... 556s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ... 556s Selecting previously unselected package libcurl4-openssl-dev:arm64. 556s Preparing to unpack .../082-libcurl4-openssl-dev_8.12.1-3ubuntu1_arm64.deb ... 556s Unpacking libcurl4-openssl-dev:arm64 (8.12.1-3ubuntu1) ... 556s Selecting previously unselected package libdatrie1:arm64. 556s Preparing to unpack .../083-libdatrie1_0.2.13-3build1_arm64.deb ... 556s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 556s Selecting previously unselected package libdeflate0:arm64. 556s Preparing to unpack .../084-libdeflate0_1.23-1_arm64.deb ... 556s Unpacking libdeflate0:arm64 (1.23-1) ... 556s Selecting previously unselected package libdeflate-dev:arm64. 556s Preparing to unpack .../085-libdeflate-dev_1.23-1_arm64.deb ... 556s Unpacking libdeflate-dev:arm64 (1.23-1) ... 556s Selecting previously unselected package libgraphite2-3:arm64. 556s Preparing to unpack .../086-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 556s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 556s Selecting previously unselected package libharfbuzz0b:arm64. 556s Preparing to unpack .../087-libharfbuzz0b_10.2.0-1_arm64.deb ... 556s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 556s Selecting previously unselected package libsz2:arm64. 556s Preparing to unpack .../088-libsz2_1.1.3-1_arm64.deb ... 556s Unpacking libsz2:arm64 (1.1.3-1) ... 556s Selecting previously unselected package libhdf5-310:arm64. 556s Preparing to unpack .../089-libhdf5-310_1.14.5+repack-3_arm64.deb ... 556s Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... 556s Selecting previously unselected package libhdf5-cpp-310:arm64. 556s Preparing to unpack .../090-libhdf5-cpp-310_1.14.5+repack-3_arm64.deb ... 556s Unpacking libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... 557s Selecting previously unselected package libhdf5-fortran-310:arm64. 557s Preparing to unpack .../091-libhdf5-fortran-310_1.14.5+repack-3_arm64.deb ... 557s Unpacking libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... 557s Selecting previously unselected package libhdf5-hl-310:arm64. 557s Preparing to unpack .../092-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... 557s Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 557s Selecting previously unselected package libhdf5-hl-fortran-310:arm64. 557s Preparing to unpack .../093-libhdf5-hl-fortran-310_1.14.5+repack-3_arm64.deb ... 557s Unpacking libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... 557s Selecting previously unselected package libhdf5-hl-cpp-310:arm64. 557s Preparing to unpack .../094-libhdf5-hl-cpp-310_1.14.5+repack-3_arm64.deb ... 557s Unpacking libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... 557s Selecting previously unselected package libjpeg-turbo8:arm64. 557s Preparing to unpack .../095-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 557s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 557s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 557s Preparing to unpack .../096-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 557s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 557s Selecting previously unselected package libjpeg8:arm64. 557s Preparing to unpack .../097-libjpeg8_8c-2ubuntu11_arm64.deb ... 557s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 557s Selecting previously unselected package libjpeg8-dev:arm64. 557s Preparing to unpack .../098-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 557s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 557s Selecting previously unselected package libjpeg-dev:arm64. 557s Preparing to unpack .../099-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 557s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 557s Selecting previously unselected package libaec-dev:arm64. 557s Preparing to unpack .../100-libaec-dev_1.1.3-1_arm64.deb ... 557s Unpacking libaec-dev:arm64 (1.1.3-1) ... 557s Selecting previously unselected package libhdf5-dev. 557s Preparing to unpack .../101-libhdf5-dev_1.14.5+repack-3_arm64.deb ... 557s Unpacking libhdf5-dev (1.14.5+repack-3) ... 557s Selecting previously unselected package x11-common. 557s Preparing to unpack .../102-x11-common_1%3a7.7+23ubuntu3_all.deb ... 557s Unpacking x11-common (1:7.7+23ubuntu3) ... 558s Selecting previously unselected package libice6:arm64. 558s Preparing to unpack .../103-libice6_2%3a1.1.1-1_arm64.deb ... 558s Unpacking libice6:arm64 (2:1.1.1-1) ... 558s Selecting previously unselected package libicu-dev:arm64. 558s Preparing to unpack .../104-libicu-dev_76.1-1ubuntu2_arm64.deb ... 558s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 558s Selecting previously unselected package liblapack3:arm64. 558s Preparing to unpack .../105-liblapack3_3.12.1-2_arm64.deb ... 558s Unpacking liblapack3:arm64 (3.12.1-2) ... 558s Selecting previously unselected package liblapack-dev:arm64. 558s Preparing to unpack .../106-liblapack-dev_3.12.1-2_arm64.deb ... 558s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 558s Selecting previously unselected package liblerc4:arm64. 558s Preparing to unpack .../107-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 558s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 558s Selecting previously unselected package libncurses-dev:arm64. 558s Preparing to unpack .../108-libncurses-dev_6.5+20250216-2_arm64.deb ... 558s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 559s Selecting previously unselected package libthai-data. 559s Preparing to unpack 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559s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 559s Selecting previously unselected package libpaper-utils. 559s Preparing to unpack .../115-libpaper-utils_2.2.5-0.3_arm64.deb ... 559s Unpacking libpaper-utils (2.2.5-0.3) ... 559s Selecting previously unselected package libpcre2-16-0:arm64. 559s Preparing to unpack .../116-libpcre2-16-0_10.45-1_arm64.deb ... 559s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 559s Selecting previously unselected package libpcre2-32-0:arm64. 559s Preparing to unpack .../117-libpcre2-32-0_10.45-1_arm64.deb ... 559s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 559s Selecting previously unselected package libpcre2-posix3:arm64. 559s Preparing to unpack .../118-libpcre2-posix3_10.45-1_arm64.deb ... 559s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 559s Selecting previously unselected package libpcre2-dev:arm64. 559s Preparing to unpack .../119-libpcre2-dev_10.45-1_arm64.deb ... 559s Unpacking libpcre2-dev:arm64 (10.45-1) ... 559s Selecting previously unselected package libpng-dev:arm64. 559s Preparing to unpack .../120-libpng-dev_1.6.47-1_arm64.deb ... 559s Unpacking libpng-dev:arm64 (1.6.47-1) ... 559s Selecting previously unselected package libreadline-dev:arm64. 559s Preparing to unpack .../121-libreadline-dev_8.2-6_arm64.deb ... 559s Unpacking libreadline-dev:arm64 (8.2-6) ... 559s Selecting previously unselected package libsharpyuv0:arm64. 560s Preparing to unpack .../122-libsharpyuv0_1.5.0-0.1_arm64.deb ... 560s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 560s Selecting previously unselected package libsm6:arm64. 560s Preparing to unpack .../123-libsm6_2%3a1.2.4-1_arm64.deb ... 560s Unpacking libsm6:arm64 (2:1.2.4-1) ... 560s Selecting previously unselected package libtcl8.6:arm64. 560s Preparing to unpack .../124-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 560s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 560s Selecting previously unselected package libjbig0:arm64. 560s Preparing to unpack .../125-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 560s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 560s Selecting previously unselected package libwebp7:arm64. 560s Preparing to unpack .../126-libwebp7_1.5.0-0.1_arm64.deb ... 560s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 560s Selecting previously unselected package libtiff6:arm64. 560s Preparing to unpack .../127-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 560s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 560s Selecting previously unselected package libxft2:arm64. 560s Preparing to unpack .../128-libxft2_2.3.6-1build1_arm64.deb ... 560s Unpacking libxft2:arm64 (2.3.6-1build1) ... 560s Selecting previously unselected package libxss1:arm64. 560s Preparing to unpack .../129-libxss1_1%3a1.2.3-1build3_arm64.deb ... 560s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 560s Selecting previously unselected package libtk8.6:arm64. 560s Preparing to unpack .../130-libtk8.6_8.6.16-1_arm64.deb ... 560s Unpacking libtk8.6:arm64 (8.6.16-1) ... 560s Selecting previously unselected package libxt6t64:arm64. 560s Preparing to unpack .../131-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 560s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 560s Selecting previously unselected package zip. 560s Preparing to unpack .../132-zip_3.0-14ubuntu2_arm64.deb ... 560s Unpacking zip (3.0-14ubuntu2) ... 560s Selecting previously unselected package unzip. 560s Preparing to unpack .../133-unzip_6.0-28ubuntu6_arm64.deb ... 560s Unpacking unzip (6.0-28ubuntu6) ... 560s Selecting previously unselected package xdg-utils. 560s Preparing to unpack .../134-xdg-utils_1.2.1-2ubuntu1_all.deb ... 560s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 560s Selecting previously unselected package r-base-core. 560s Preparing to unpack .../135-r-base-core_4.4.3-1_arm64.deb ... 560s Unpacking r-base-core (4.4.3-1) ... 561s Selecting previously unselected package r-cran-littler. 561s Preparing to unpack .../136-r-cran-littler_0.3.20-2_arm64.deb ... 561s Unpacking r-cran-littler (0.3.20-2) ... 561s Selecting previously unselected package littler. 561s Preparing to unpack .../137-littler_0.3.20-2_all.deb ... 561s Unpacking littler (0.3.20-2) ... 561s Selecting previously unselected package liblzma-dev:arm64. 561s Preparing to unpack .../138-liblzma-dev_5.6.4-1_arm64.deb ... 561s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 561s Selecting previously unselected package libtirpc-dev:arm64. 561s Preparing to unpack .../139-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 561s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 561s Selecting previously unselected package r-base-dev. 561s Preparing to unpack .../140-r-base-dev_4.4.3-1_all.deb ... 561s Unpacking r-base-dev (4.4.3-1) ... 561s Selecting previously unselected package pkg-r-autopkgtest. 562s Preparing to unpack .../141-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 562s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 562s Selecting previously unselected package r-bioc-biocgenerics. 562s Preparing to unpack .../142-r-bioc-biocgenerics_0.52.0-2_all.deb ... 562s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 562s Selecting previously unselected package r-bioc-biobase. 562s Preparing to unpack .../143-r-bioc-biobase_2.66.0-2_arm64.deb ... 562s Unpacking r-bioc-biobase (2.66.0-2) ... 562s Selecting previously unselected package r-bioc-s4vectors. 562s Preparing to unpack .../144-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 562s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 562s Selecting previously unselected package r-bioc-iranges. 562s Preparing to unpack .../145-r-bioc-iranges_2.40.1-2_arm64.deb ... 562s Unpacking r-bioc-iranges (2.40.1-2) ... 562s Selecting previously unselected package r-cran-dbi. 562s Preparing to unpack .../146-r-cran-dbi_1.2.3-1_all.deb ... 562s Unpacking r-cran-dbi (1.2.3-1) ... 562s Selecting previously unselected package r-cran-bit. 562s Preparing to unpack .../147-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 562s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 562s Selecting previously unselected package r-cran-bit64. 562s Preparing to unpack .../148-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 562s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 562s Selecting previously unselected package r-cran-rlang. 562s Preparing to unpack .../149-r-cran-rlang_1.1.5-1_arm64.deb ... 562s Unpacking r-cran-rlang (1.1.5-1) ... 562s Selecting previously unselected package r-cran-cli. 562s Preparing to unpack .../150-r-cran-cli_3.6.4-1_arm64.deb ... 562s Unpacking r-cran-cli (3.6.4-1) ... 562s Selecting previously unselected package r-cran-glue. 562s Preparing to unpack .../151-r-cran-glue_1.8.0-1_arm64.deb ... 562s Unpacking r-cran-glue (1.8.0-1) ... 562s Selecting previously unselected package r-cran-lifecycle. 562s Preparing to unpack .../152-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 562s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 563s Selecting previously unselected package r-cran-vctrs. 563s Preparing to unpack .../153-r-cran-vctrs_0.6.5-1_arm64.deb ... 563s Unpacking r-cran-vctrs (0.6.5-1) ... 563s Selecting previously unselected package r-cran-blob. 563s Preparing to unpack .../154-r-cran-blob_1.2.4-1_all.deb ... 563s Unpacking r-cran-blob (1.2.4-1) ... 563s Selecting previously unselected package r-cran-fastmap. 563s Preparing to unpack .../155-r-cran-fastmap_1.2.0-1_arm64.deb ... 563s Unpacking r-cran-fastmap (1.2.0-1) ... 563s Selecting previously unselected package r-cran-cachem. 563s Preparing to unpack .../156-r-cran-cachem_1.1.0-1_arm64.deb ... 563s Unpacking r-cran-cachem (1.1.0-1) ... 563s Selecting previously unselected package r-cran-memoise. 563s Preparing to unpack .../157-r-cran-memoise_2.0.1-1_all.deb ... 563s Unpacking r-cran-memoise (2.0.1-1) ... 563s Selecting previously unselected package r-cran-pkgconfig. 563s Preparing to unpack .../158-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 563s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 563s Selecting previously unselected package r-cran-plogr. 563s Preparing to unpack .../159-r-cran-plogr_0.2.0-3build1_all.deb ... 563s Unpacking r-cran-plogr (0.2.0-3build1) ... 563s Selecting previously unselected package r-cran-cpp11. 563s Preparing to unpack .../160-r-cran-cpp11_0.5.2-1_all.deb ... 563s Unpacking r-cran-cpp11 (0.5.2-1) ... 563s Selecting previously unselected package r-cran-rsqlite. 563s Preparing to unpack .../161-r-cran-rsqlite_2.3.9-1_arm64.deb ... 563s Unpacking r-cran-rsqlite (2.3.9-1) ... 563s Selecting previously unselected package r-cran-curl. 563s Preparing to unpack .../162-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 563s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 563s Selecting previously unselected package r-cran-jsonlite. 563s Preparing to unpack .../163-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 563s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 563s Selecting previously unselected package r-cran-mime. 563s Preparing to unpack .../164-r-cran-mime_0.12-2_arm64.deb ... 563s Unpacking r-cran-mime (0.12-2) ... 563s Selecting previously unselected package r-cran-sys. 563s Preparing to unpack .../165-r-cran-sys_3.4.3-1_arm64.deb ... 563s Unpacking r-cran-sys (3.4.3-1) ... 564s Selecting previously unselected package r-cran-askpass. 564s Preparing to unpack .../166-r-cran-askpass_1.2.1-1_arm64.deb ... 564s Unpacking r-cran-askpass (1.2.1-1) ... 564s Selecting previously unselected package r-cran-openssl. 564s Preparing to unpack .../167-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 564s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 564s Selecting previously unselected package r-cran-r6. 564s Preparing to unpack .../168-r-cran-r6_2.6.1-1_all.deb ... 564s Unpacking r-cran-r6 (2.6.1-1) ... 564s Selecting previously unselected package r-cran-httr. 564s Preparing to unpack .../169-r-cran-httr_1.4.7+dfsg-1_all.deb ... 564s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 564s Selecting previously unselected package r-cran-png. 564s Preparing to unpack .../170-r-cran-png_0.1-8-1build2_arm64.deb ... 564s Unpacking r-cran-png (0.1-8-1build2) ... 564s Selecting previously unselected package r-bioc-zlibbioc. 564s Preparing to unpack .../171-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 564s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 564s Selecting previously unselected package r-bioc-xvector. 564s Preparing to unpack .../172-r-bioc-xvector_0.46.0-2_arm64.deb ... 564s Unpacking r-bioc-xvector (0.46.0-2) ... 564s Selecting previously unselected package r-bioc-ucsc.utils. 564s Preparing to unpack .../173-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 564s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 564s Selecting previously unselected package r-bioc-genomeinfodbdata. 564s Preparing to unpack .../174-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 564s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 564s Selecting previously unselected package r-bioc-genomeinfodb. 564s Preparing to unpack .../175-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 564s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 565s Selecting previously unselected package r-cran-crayon. 565s Preparing to unpack .../176-r-cran-crayon_1.5.3-1_all.deb ... 565s Unpacking r-cran-crayon (1.5.3-1) ... 565s Selecting previously unselected package r-bioc-biostrings. 565s Preparing to unpack .../177-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 565s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 565s Selecting previously unselected package r-bioc-keggrest. 565s Preparing to unpack .../178-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 565s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 565s Selecting previously unselected package r-bioc-annotationdbi. 565s Preparing to unpack .../179-r-bioc-annotationdbi_1.68.0-2_all.deb ... 565s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 565s Selecting previously unselected package r-cran-xml. 565s Preparing to unpack .../180-r-cran-xml_3.99-0.18-1_arm64.deb ... 565s Unpacking r-cran-xml (3.99-0.18-1) ... 565s Selecting previously unselected package r-cran-xtable. 565s Preparing to unpack .../181-r-cran-xtable_1%3a1.8-4-2_all.deb ... 565s Unpacking r-cran-xtable (1:1.8-4-2) ... 565s Selecting previously unselected package r-bioc-annotate. 565s Preparing to unpack .../182-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 565s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 565s Selecting previously unselected package r-cran-generics. 565s Preparing to unpack .../183-r-cran-generics_0.1.3-1_all.deb ... 565s Unpacking r-cran-generics (0.1.3-1) ... 565s Selecting previously unselected package r-cran-magrittr. 565s Preparing to unpack .../184-r-cran-magrittr_2.0.3-1_arm64.deb ... 565s Unpacking r-cran-magrittr (2.0.3-1) ... 566s Selecting previously unselected package r-cran-utf8. 566s Preparing to unpack .../185-r-cran-utf8_1.2.4-1_arm64.deb ... 566s Unpacking r-cran-utf8 (1.2.4-1) ... 566s Selecting previously unselected package r-cran-pillar. 566s Preparing to unpack .../186-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 566s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 566s Selecting previously unselected package r-cran-fansi. 566s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_arm64.deb ... 566s Unpacking r-cran-fansi (1.0.5-1) ... 566s Selecting previously unselected package r-cran-tibble. 566s Preparing to unpack .../188-r-cran-tibble_3.2.1+dfsg-3_arm64.deb ... 566s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 566s Selecting previously unselected package r-cran-withr. 566s Preparing to unpack .../189-r-cran-withr_3.0.2+dfsg-1_all.deb ... 566s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 566s Selecting previously unselected package r-cran-tidyselect. 566s Preparing to unpack .../190-r-cran-tidyselect_1.2.1+dfsg-1_arm64.deb ... 566s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 566s Selecting previously unselected package r-cran-dplyr. 566s Preparing to unpack .../191-r-cran-dplyr_1.1.4-4_arm64.deb ... 566s Unpacking r-cran-dplyr (1.1.4-4) ... 566s Selecting previously unselected package r-cran-purrr. 566s Preparing to unpack .../192-r-cran-purrr_1.0.4-1_arm64.deb ... 566s Unpacking r-cran-purrr (1.0.4-1) ... 566s Selecting previously unselected package r-cran-stringi. 566s Preparing to unpack .../193-r-cran-stringi_1.8.4-1build1_arm64.deb ... 566s Unpacking r-cran-stringi (1.8.4-1build1) ... 566s Selecting previously unselected package r-cran-stringr. 566s Preparing to unpack .../194-r-cran-stringr_1.5.1-1_all.deb ... 566s Unpacking r-cran-stringr (1.5.1-1) ... 566s Selecting previously unselected package r-cran-tidyr. 566s Preparing to unpack .../195-r-cran-tidyr_1.3.1-1_arm64.deb ... 566s Unpacking r-cran-tidyr (1.3.1-1) ... 567s Selecting previously unselected package r-cran-dbplyr. 567s Preparing to unpack .../196-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 567s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 567s Selecting previously unselected package r-cran-filelock. 567s Preparing to unpack .../197-r-cran-filelock_1.0.3-1_arm64.deb ... 567s Unpacking r-cran-filelock (1.0.3-1) ... 567s Selecting previously unselected package r-bioc-biocfilecache. 567s Preparing to unpack .../198-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 567s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 567s Selecting previously unselected package r-cran-biocmanager. 567s Preparing to unpack .../199-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 567s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 567s Selecting previously unselected package r-bioc-biocversion. 567s Preparing to unpack .../200-r-bioc-biocversion_3.20.0-2_all.deb ... 567s Unpacking r-bioc-biocversion (3.20.0-2) ... 567s Selecting previously unselected package r-cran-rappdirs. 567s Preparing to unpack .../201-r-cran-rappdirs_0.3.3-1_arm64.deb ... 567s Unpacking r-cran-rappdirs (0.3.3-1) ... 567s Selecting previously unselected package r-cran-yaml. 567s Preparing to unpack .../202-r-cran-yaml_2.3.10-1_arm64.deb ... 567s Unpacking r-cran-yaml (2.3.10-1) ... 567s Selecting previously unselected package r-bioc-annotationhub. 567s Preparing to unpack .../203-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ... 567s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ... 567s Selecting previously unselected package r-bioc-biocio. 567s Preparing to unpack .../204-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 567s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 567s Selecting previously unselected package r-cran-formatr. 567s Preparing to unpack .../205-r-cran-formatr_1.14-2_all.deb ... 567s Unpacking r-cran-formatr (1.14-2) ... 567s Selecting previously unselected package r-cran-lambda.r. 567s Preparing to unpack .../206-r-cran-lambda.r_1.2.4-2build1_all.deb ... 567s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 567s Selecting previously unselected package r-cran-futile.options. 567s Preparing to unpack .../207-r-cran-futile.options_1.0.1-3build1_all.deb ... 567s Unpacking r-cran-futile.options (1.0.1-3build1) ... 567s Selecting previously unselected package r-cran-futile.logger. 568s Preparing to unpack .../208-r-cran-futile.logger_1.4.3-4build1_all.deb ... 568s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 568s Selecting previously unselected package r-cran-snow. 568s Preparing to unpack .../209-r-cran-snow_1%3a0.4.4-2_all.deb ... 568s Unpacking r-cran-snow (1:0.4.4-2) ... 568s Selecting previously unselected package r-cran-codetools. 568s Preparing to unpack .../210-r-cran-codetools_0.2-20-1_all.deb ... 568s Unpacking r-cran-codetools (0.2-20-1) ... 568s Selecting previously unselected package r-cran-bh. 568s Preparing to unpack .../211-r-cran-bh_1.84.0-1_all.deb ... 568s Unpacking r-cran-bh (1.84.0-1) ... 568s Selecting previously unselected package r-bioc-biocparallel. 568s Preparing to unpack .../212-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 568s Unpacking r-bioc-biocparallel (1.40.0-2) ... 568s Selecting previously unselected package r-cran-lattice. 568s Preparing to unpack .../213-r-cran-lattice_0.22-6-1_arm64.deb ... 568s Unpacking r-cran-lattice (0.22-6-1) ... 568s Selecting previously unselected package r-cran-matrix. 568s Preparing to unpack .../214-r-cran-matrix_1.7-3-1_arm64.deb ... 568s Unpacking r-cran-matrix (1.7-3-1) ... 568s Selecting previously unselected package r-cran-matrixstats. 568s Preparing to unpack .../215-r-cran-matrixstats_1.5.0-1_arm64.deb ... 568s Unpacking r-cran-matrixstats (1.5.0-1) ... 568s Selecting previously unselected package r-bioc-matrixgenerics. 568s Preparing to unpack .../216-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 568s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 568s Selecting previously unselected package r-cran-abind. 568s Preparing to unpack .../217-r-cran-abind_1.4-8-1_all.deb ... 568s Unpacking r-cran-abind (1.4-8-1) ... 568s Selecting previously unselected package r-bioc-s4arrays. 568s Preparing to unpack .../218-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 568s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 568s Selecting previously unselected package r-bioc-sparsearray. 569s Preparing to unpack .../219-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 569s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 569s Selecting previously unselected package r-bioc-delayedarray. 569s Preparing to unpack .../220-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 569s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 569s Selecting previously unselected package r-cran-pkgkitten. 569s Preparing to unpack .../221-r-cran-pkgkitten_0.2.4-1_all.deb ... 569s Unpacking r-cran-pkgkitten (0.2.4-1) ... 569s Selecting previously unselected package r-cran-rcpp. 569s Preparing to unpack .../222-r-cran-rcpp_1.0.14-1_arm64.deb ... 569s Unpacking r-cran-rcpp (1.0.14-1) ... 569s Selecting previously unselected package r-bioc-sparsematrixstats. 569s Preparing to unpack .../223-r-bioc-sparsematrixstats_1.18.0+dfsg-2_arm64.deb ... 569s Unpacking r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 569s Selecting previously unselected package r-bioc-delayedmatrixstats. 569s Preparing to unpack .../224-r-bioc-delayedmatrixstats_1.28.1+ds-1_all.deb ... 569s Unpacking r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 569s Selecting previously unselected package r-bioc-experimenthub. 569s Preparing to unpack .../225-r-bioc-experimenthub_2.14.0+ds-2_all.deb ... 569s Unpacking r-bioc-experimenthub (2.14.0+ds-2) ... 569s Selecting previously unselected package r-cran-survival. 569s Preparing to unpack .../226-r-cran-survival_3.8-3-1_arm64.deb ... 569s Unpacking r-cran-survival (3.8-3-1) ... 569s Selecting previously unselected package r-bioc-genefilter. 569s Preparing to unpack .../227-r-bioc-genefilter_1.88.0-2_arm64.deb ... 569s Unpacking r-bioc-genefilter (1.88.0-2) ... 569s Selecting previously unselected package r-bioc-genomicranges. 569s Preparing to unpack .../228-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 569s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 570s Selecting previously unselected package r-bioc-summarizedexperiment. 570s Preparing to unpack .../229-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 570s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 570s Selecting previously unselected package r-cran-bitops. 570s Preparing to unpack .../230-r-cran-bitops_1.0-9-1_arm64.deb ... 570s Unpacking r-cran-bitops (1.0-9-1) ... 570s Selecting previously unselected package r-bioc-rhtslib. 570s Preparing to unpack .../231-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 570s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 570s Selecting previously unselected package r-bioc-rsamtools. 570s Preparing to unpack .../232-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 570s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 570s Selecting previously unselected package r-bioc-genomicalignments. 570s Preparing to unpack .../233-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 570s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 570s Selecting previously unselected package r-cran-rcurl. 570s Preparing to unpack .../234-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 570s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 570s Selecting previously unselected package r-cran-rjson. 570s Preparing to unpack .../235-r-cran-rjson_0.2.23-1_arm64.deb ... 570s Unpacking r-cran-rjson (0.2.23-1) ... 570s Selecting previously unselected package r-cran-restfulr. 570s Preparing to unpack .../236-r-cran-restfulr_0.0.15-1_arm64.deb ... 570s Unpacking r-cran-restfulr (0.0.15-1) ... 570s Selecting previously unselected package r-bioc-rtracklayer. 570s Preparing to unpack .../237-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 570s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 570s Selecting previously unselected package r-bioc-genomicfeatures. 570s Preparing to unpack .../238-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 570s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 571s Selecting previously unselected package r-bioc-rhdf5lib. 571s Preparing to unpack .../239-r-bioc-rhdf5lib_1.28.0+dfsg-2build1_arm64.deb ... 571s Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 571s Selecting previously unselected package r-bioc-rhdf5filters. 571s Preparing to unpack .../240-r-bioc-rhdf5filters_1.18.0+dfsg-2_arm64.deb ... 571s Unpacking r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 571s Selecting previously unselected package r-bioc-rhdf5. 571s Preparing to unpack .../241-r-bioc-rhdf5_2.50.2+dfsg-1build1_arm64.deb ... 571s Unpacking r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 571s Selecting previously unselected package r-bioc-hdf5array. 571s Preparing to unpack .../242-r-bioc-hdf5array_1.34.0-2build1_arm64.deb ... 571s Unpacking r-bioc-hdf5array (1.34.0-2build1) ... 571s Selecting previously unselected package r-bioc-singlecellexperiment. 571s Preparing to unpack .../243-r-bioc-singlecellexperiment_1.28.1+ds-2_all.deb ... 571s Unpacking r-bioc-singlecellexperiment (1.28.1+ds-2) ... 571s Selecting previously unselected package r-cran-runit. 571s Preparing to unpack .../244-r-cran-runit_0.4.33-1_all.deb ... 571s Unpacking r-cran-runit (0.4.33-1) ... 571s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 571s Setting up libgnutls-openssl27t64:arm64 (3.8.9-2ubuntu2) ... 571s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 571s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 571s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 571s Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... 571s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 571s Setting up hdf5-helpers (1.14.5+repack-3) ... 571s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 571s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 571s Setting up libxcb-render0:arm64 (1.17.0-2) ... 571s Setting up unzip (6.0-28ubuntu6) ... 571s Setting up x11-common (1:7.7+23ubuntu3) ... 572s Setting up libdeflate0:arm64 (1.23-1) ... 572s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 572s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 572s Setting up libreadline-dev:arm64 (8.2-6) ... 572s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 572s Setting up libpcre2-16-0:arm64 (10.45-1) ... 572s Setting up libaec0:arm64 (1.1.3-1) ... 572s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ... 572s Setting up libsnappy1v5:arm64 (1.2.1-1) ... 572s Setting up zip (3.0-14ubuntu2) ... 572s Setting up libpcre2-32-0:arm64 (10.45-1) ... 572s Setting up libblas3:arm64 (3.12.1-2) ... 572s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 572s Setting up libunbound8:arm64 (1.22.0-1ubuntu1) ... 572s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 572s Setting up libpkgconf3:arm64 (1.8.1-4) ... 572s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 572s Setting up libgnutls-dane0t64:arm64 (3.8.9-2ubuntu2) ... 572s Setting up libgssrpc4t64:arm64 (1.21.3-4ubuntu2) ... 572s Setting up libldap-dev:arm64 (2.6.9+dfsg-1~exp2ubuntu1) ... 572s Setting up comerr-dev:arm64 (2.1-1.47.2-1ubuntu1) ... 572s Setting up fonts-dejavu-mono (2.37-8) ... 572s Setting up libssl-dev:arm64 (3.4.1-1ubuntu1) ... 572s Setting up libmpc3:arm64 (1.3.1-1build2) ... 572s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 572s Setting up icu-devtools (76.1-1ubuntu2) ... 572s Setting up fonts-dejavu-core (2.37-8) ... 572s Setting up pkgconf-bin (1.8.1-4) ... 572s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 572s Setting up libidn2-dev:arm64 (2.3.7-2build2) ... 572s Setting up libgfortran5:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libwebp7:arm64 (1.5.0-0.1) ... 572s Setting up liblzma-dev:arm64 (5.6.4-1) ... 572s Setting up libubsan1:arm64 (15-20250222-0ubuntu1) ... 572s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 572s Setting up libpcre2-posix3:arm64 (10.45-1) ... 572s Setting up libhwasan0:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libasan8:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libblosc1:arm64 (1.21.5+ds-1build1) ... 572s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 572s Setting up libthai-data (0.1.29-2build1) ... 572s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 572s Setting up libpaper2:arm64 (2.2.5-0.3) ... 572s Setting up libtsan2:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libisl23:arm64 (0.27-1) ... 572s Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... 572s Setting up libdeflate-dev:arm64 (1.23-1) ... 572s Setting up libicu-dev:arm64 (76.1-1ubuntu2) ... 572s Setting up xdg-utils (1.2.1-2ubuntu1) ... 572s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 572s Setting up libcc1-0:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libbrotli-dev:arm64 (1.1.0-2build4) ... 572s Setting up liblsan0:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu3) ... 572s Setting up libblas-dev:arm64 (3.12.1-2) ... 572s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 572s Setting up libsz2:arm64 (1.1.3-1) ... 572s Setting up dctrl-tools (2.24-3build3) ... 572s Setting up libitm1:arm64 (15-20250222-0ubuntu1) ... 572s Setting up libkadm5clnt-mit12:arm64 (1.21.3-4ubuntu2) ... 572s Setting up libbz2-dev:arm64 (1.0.8-6) ... 572s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 572s Setting up libice6:arm64 (2:1.1.1-1) ... 572s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 572s Setting up liblapack3:arm64 (3.12.1-2) ... 572s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 572s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3ubuntu1) ... 572s Setting up libpcre2-dev:arm64 (10.45-1) ... 572s Setting up nettle-dev:arm64 (3.10.1-1) ... 572s Setting up libkdb5-10t64:arm64 (1.21.3-4ubuntu2) ... 572s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 572s Setting up libpng-dev:arm64 (1.6.47-1) ... 572s Setting up libaec-dev:arm64 (1.1.3-1) ... 572s Setting up libpaper-utils (2.2.5-0.3) ... 572s Setting up pkgconf:arm64 (1.8.1-4) ... 572s Setting up libthai0:arm64 (0.1.29-2build1) ... 572s Setting up liblapack-dev:arm64 (3.12.1-2) ... 572s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 572s Setting up libssh2-1-dev:arm64 (1.11.1-1) ... 572s Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... 572s Setting up cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 572s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 572s Setting up libkadm5srv-mit12:arm64 (1.21.3-4ubuntu2) ... 572s Setting up libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 572s Setting up libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 572s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 572s Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... 572s Setting up libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 572s Setting up libsm6:arm64 (2:1.2.4-1) ... 572s Setting up krb5-multidev:arm64 (1.21.3-4ubuntu2) ... 573s Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... 573s Setting up libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 573s Setting up libgnutls28-dev:arm64 (3.8.9-2ubuntu2) ... 573s Setting up libnghttp2-dev:arm64 (1.64.0-1) ... 573s Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... 573s Setting up fontconfig (2.15.0-2ubuntu1) ... 575s Regenerating fonts cache... done. 575s Setting up libxft2:arm64 (2.3.6-1build1) ... 575s Setting up libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 575s Setting up libtk8.6:arm64 (8.6.16-1) ... 575s Setting up libpango-1.0-0:arm64 (1.56.2-1) ... 575s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 575s Setting up libcairo2:arm64 (1.18.2-2) ... 575s Setting up libkrb5-dev:arm64 (1.21.3-4ubuntu2) ... 575s Setting up cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 575s Setting up libxt6t64:arm64 (1:1.2.1-1.2build1) ... 575s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 575s Setting up cpp-14 (14.2.0-17ubuntu3) ... 575s Setting up cpp (4:14.2.0-1ubuntu1) ... 575s Setting up libboost-dev:arm64 (1.83.0.2ubuntu1) ... 575s Setting up gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 575s Setting up libpangoft2-1.0-0:arm64 (1.56.2-1) ... 575s Setting up libpangocairo-1.0-0:arm64 (1.56.2-1) ... 575s Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... 575s Setting up gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 575s Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... 575s Setting up g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 575s Setting up gcc-14 (14.2.0-17ubuntu3) ... 575s Setting up libcurl4-openssl-dev:arm64 (8.12.1-3ubuntu1) ... 575s Setting up r-base-core (4.4.3-1) ... 575s Creating config file /etc/R/Renviron with new version 575s Setting up r-cran-crayon (1.5.3-1) ... 575s Setting up libhdf5-dev (1.14.5+repack-3) ... 575s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 575s Setting up r-cran-futile.options (1.0.1-3build1) ... 575s Setting up r-cran-lattice (0.22-6-1) ... 575s Setting up r-cran-formatr (1.14-2) ... 575s Setting up r-cran-xml (3.99-0.18-1) ... 575s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 575s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 575s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 575s Setting up g++-14 (14.2.0-17ubuntu3) ... 575s Setting up r-cran-rjson (0.2.23-1) ... 575s Setting up r-cran-r6 (2.6.1-1) ... 575s Setting up r-cran-pkgkitten (0.2.4-1) ... 575s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 575s Setting up r-cran-magrittr (2.0.3-1) ... 575s Setting up r-cran-rappdirs (0.3.3-1) ... 575s Setting up r-cran-filelock (1.0.3-1) ... 575s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 575s Setting up r-cran-littler (0.3.20-2) ... 575s Setting up r-cran-bh (1.84.0-1) ... 575s Setting up r-cran-rcpp (1.0.14-1) ... 575s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 575s Setting up r-cran-codetools (0.2-20-1) ... 575s Setting up r-bioc-biocgenerics (0.52.0-2) ... 575s Setting up r-cran-rlang (1.1.5-1) ... 575s Setting up r-cran-matrixstats (1.5.0-1) ... 575s Setting up littler (0.3.20-2) ... 575s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 575s Setting up r-cran-sys (3.4.3-1) ... 575s Setting up r-cran-plogr (0.2.0-3build1) ... 575s Setting up r-cran-withr (3.0.2+dfsg-1) ... 575s Setting up r-cran-mime (0.12-2) ... 575s Setting up r-cran-generics (0.1.3-1) ... 575s Setting up r-cran-abind (1.4-8-1) ... 575s Setting up r-cran-yaml (2.3.10-1) ... 575s Setting up r-cran-lambda.r (1.2.4-2build1) ... 575s Setting up r-cran-dbi (1.2.3-1) ... 575s Setting up r-cran-fansi (1.0.5-1) ... 575s Setting up r-bioc-rhdf5lib (1.28.0+dfsg-2build1) ... 575s Setting up r-cran-snow (1:0.4.4-2) ... 575s Setting up r-cran-glue (1.8.0-1) ... 575s Setting up r-bioc-rhdf5filters (1.18.0+dfsg-2) ... 575s Setting up r-cran-bit (4.6.0+dfsg-1) ... 575s Setting up r-cran-xtable (1:1.8-4-2) ... 575s Setting up r-cran-cli (3.6.4-1) ... 575s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 575s Setting up r-cran-bitops (1.0-9-1) ... 575s Setting up r-bioc-biocversion (3.20.0-2) ... 575s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 575s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 575s Setting up gcc (4:14.2.0-1ubuntu1) ... 575s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 575s Setting up r-cran-askpass (1.2.1-1) ... 575s Setting up r-cran-fastmap (1.2.0-1) ... 575s Setting up r-cran-png (0.1-8-1build2) ... 575s Setting up r-bioc-biobase (2.66.0-2) ... 575s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 575s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 575s Setting up r-cran-utf8 (1.2.4-1) ... 575s Setting up r-cran-stringi (1.8.4-1build1) ... 575s Setting up r-cran-cpp11 (0.5.2-1) ... 575s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 575s Setting up r-cran-runit (0.4.33-1) ... 575s Setting up r-cran-futile.logger (1.4.3-4build1) ... 575s Setting up r-cran-matrix (1.7-3-1) ... 575s Setting up g++ (4:14.2.0-1ubuntu1) ... 575s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 575s Setting up r-cran-cachem (1.1.0-1) ... 575s Setting up build-essential (12.10ubuntu1) ... 575s Setting up r-bioc-iranges (2.40.1-2) ... 575s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 575s Setting up r-cran-restfulr (0.0.15-1) ... 575s Setting up r-bioc-sparsematrixstats (1.18.0+dfsg-2) ... 575s Setting up r-cran-vctrs (0.6.5-1) ... 575s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 575s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 575s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 575s Setting up r-cran-stringr (1.5.1-1) ... 575s Setting up r-bioc-biocparallel (1.40.0-2) ... 575s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 575s Setting up r-bioc-rhdf5 (2.50.2+dfsg-1build1) ... 575s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 575s Setting up r-cran-survival (3.8-3-1) ... 575s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 575s Setting up gfortran (4:14.2.0-1ubuntu1) ... 575s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 575s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 575s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 575s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 575s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 575s Setting up r-cran-httr (1.4.7+dfsg-1) ... 575s Setting up r-cran-memoise (2.0.1-1) ... 575s Setting up r-cran-purrr (1.0.4-1) ... 575s Setting up r-cran-blob (1.2.4-1) ... 575s Setting up r-bioc-xvector (0.46.0-2) ... 575s Setting up r-cran-dplyr (1.1.4-4) ... 575s Setting up r-cran-rsqlite (2.3.9-1) ... 575s Setting up r-base-dev (4.4.3-1) ... 575s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 575s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 575s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 575s Setting up r-cran-tidyr (1.3.1-1) ... 575s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 575s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ... 575s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 575s Setting up r-bioc-hdf5array (1.34.0-2build1) ... 575s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ... 575s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 575s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 575s Setting up r-bioc-delayedmatrixstats (1.28.1+ds-1) ... 575s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 575s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 575s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 575s Setting up r-bioc-annotationdbi (1.68.0-2) ... 575s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ... 575s Setting up r-bioc-annotate (1.84.0+dfsg-2) ... 575s Setting up r-bioc-genefilter (1.88.0-2) ... 575s Setting up r-bioc-genomicalignments (1.42.0-2) ... 575s Setting up r-bioc-rtracklayer (1.66.0-2) ... 575s Setting up r-bioc-singlecellexperiment (1.28.1+ds-2) ... 575s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 575s Setting up r-bioc-experimenthub (2.14.0+ds-2) ... 575s Processing triggers for man-db (2.13.0-1) ... 577s Processing triggers for install-info (7.1.1-1) ... 578s Processing triggers for libc-bin (2.41-1ubuntu2) ... 579s autopkgtest [15:17:19]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 579s autopkgtest [15:17:19]: test pkg-r-autopkgtest: [----------------------- 579s Test: Try to load the R library HDF5Array 580s 580s R version 4.4.3 (2025-02-28) -- "Trophy Case" 580s Copyright (C) 2025 The R Foundation for Statistical Computing 580s Platform: aarch64-unknown-linux-gnu 580s 580s R is free software and comes with ABSOLUTELY NO WARRANTY. 580s You are welcome to redistribute it under certain conditions. 580s Type 'license()' or 'licence()' for distribution details. 580s 580s R is a collaborative project with many contributors. 580s Type 'contributors()' for more information and 580s 'citation()' on how to cite R or R packages in publications. 580s 580s Type 'demo()' for some demos, 'help()' for on-line help, or 580s 'help.start()' for an HTML browser interface to help. 580s Type 'q()' to quit R. 580s 580s > library('HDF5Array') 580s Loading required package: SparseArray 580s Loading required package: Matrix 581s Loading required package: BiocGenerics 582s 582s Attaching package: ‘BiocGenerics’ 582s 582s The following objects are masked from ‘package:stats’: 582s 582s IQR, mad, sd, var, xtabs 582s 582s The following objects are masked from ‘package:base’: 582s 582s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 582s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 582s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 582s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 582s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 582s table, tapply, union, unique, unsplit, which.max, which.min 582s 582s Loading required package: MatrixGenerics 582s Loading required package: matrixStats 582s 582s Attaching package: ‘MatrixGenerics’ 582s 582s The following objects are masked from ‘package:matrixStats’: 582s 582s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 582s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 582s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 582s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 582s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 582s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 582s colWeightedMeans, colWeightedMedians, colWeightedSds, 582s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 582s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 582s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 582s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 582s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 582s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 582s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 582s rowWeightedSds, rowWeightedVars 582s 582s Loading required package: S4Vectors 582s Loading required package: stats4 583s 583s Attaching package: ‘S4Vectors’ 583s 583s The following objects are masked from ‘package:Matrix’: 583s 583s expand, unname 583s 583s The following object is masked from ‘package:utils’: 583s 583s findMatches 583s 583s The following objects are masked from ‘package:base’: 583s 583s expand.grid, I, unname 583s 583s Loading required package: S4Arrays 583s Loading required package: abind 583s Loading required package: IRanges 584s 584s Attaching package: ‘S4Arrays’ 584s 584s The following object is masked from ‘package:abind’: 584s 584s abind 584s 584s The following object is masked from ‘package:base’: 584s 584s rowsum 584s 585s Loading required package: DelayedArray 587s 587s Attaching package: ‘DelayedArray’ 587s 587s The following objects are masked from ‘package:base’: 587s 587s apply, scale, sweep 587s 587s Loading required package: rhdf5 588s > 588s > 588s 588s Attaching package: ‘HDF5Array’ 588s 588s The following object is masked from ‘package:rhdf5’: 588s 588s h5ls 588s 588s Other tests are currently unsupported! 588s They will be progressively added. 588s autopkgtest [15:17:28]: test pkg-r-autopkgtest: -----------------------] 588s autopkgtest [15:17:28]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 588s pkg-r-autopkgtest PASS 589s autopkgtest [15:17:29]: @@@@@@@@@@@@@@@@@@@@ summary 589s pkg-r-autopkgtest PASS 607s nova [W] Using flock in prodstack6-arm64 607s Creating nova instance adt-plucky-arm64-r-bioc-hdf5array-20250315-150740-juju-7f2275-prod-proposed-migration-environment-2-289aad02-2706-441f-aa44-fa20c7ed581a from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 607s nova [W] Timed out waiting for a4490ca4-0860-4b1b-a501-a94bc203ea1c to get deleted.