0s autopkgtest [15:07:36]: starting date and time: 2025-03-15 15:07:36+0000 0s autopkgtest [15:07:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:07:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ljzyk229/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-grohmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-23.secgroup --name adt-plucky-arm64-r-bioc-grohmm-20250315-150736-juju-7f2275-prod-proposed-migration-environment-2-4b64351b-50d3-4ce8-8dc5-dea3ce37c325 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 149s autopkgtest [15:10:05]: testbed dpkg architecture: arm64 149s autopkgtest [15:10:05]: testbed apt version: 2.9.33 150s autopkgtest [15:10:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 150s autopkgtest [15:10:06]: testbed release detected to be: None 151s autopkgtest [15:10:07]: updating testbed package index (apt update) 151s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 151s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 152s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 152s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 152s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 152s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 152s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 152s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 152s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 152s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 153s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 153s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 153s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 153s Fetched 1094 kB in 2s (654 kB/s) 154s Reading package lists... 154s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Calculating upgrade... 155s Calculating upgrade... 156s The following packages will be upgraded: 156s python3-jinja2 strace 156s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s Need to get 608 kB of archives. 156s After this operation, 11.3 kB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 157s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 158s Fetched 608 kB in 1s (526 kB/s) 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 158s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 158s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 158s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 158s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 158s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 158s Setting up strace (6.13+ds-1ubuntu1) ... 158s Processing triggers for man-db (2.13.0-1) ... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s Solving dependencies... 160s The following packages will be REMOVED: 160s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 160s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 160s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 160s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 160s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 160s After this operation, 267 MB disk space will be freed. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 160s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 160s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 160s Removing libpython3.12t64:arm64 (3.12.9-1) ... 160s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 161s Removing libnsl2:arm64 (1.3.0-3build3) ... 161s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 161s Removing libunwind8:arm64 (1.6.2-3.1) ... 161s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 161s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 163s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 163s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 163s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 163s /etc/kernel/postrm.d/initramfs-tools: 163s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 163s /etc/kernel/postrm.d/zz-flash-kernel: 163s flash-kernel: Kernel 6.11.0-8-generic has been removed. 163s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 163s /etc/kernel/postrm.d/zz-update-grub: 163s Sourcing file `/etc/default/grub' 163s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 163s Generating grub configuration file ... 163s Found linux image: /boot/vmlinuz-6.14.0-10-generic 163s Found initrd image: /boot/initrd.img-6.14.0-10-generic 164s Warning: os-prober will not be executed to detect other bootable partitions. 164s Systems on them will not be added to the GRUB boot configuration. 164s Check GRUB_DISABLE_OS_PROBER documentation entry. 164s Adding boot menu entry for UEFI Firmware Settings ... 164s done 164s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 164s Processing triggers for libc-bin (2.41-1ubuntu1) ... 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 164s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 164s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 164s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 165s autopkgtest [15:10:21]: upgrading testbed (apt dist-upgrade and autopurge) 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 166s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 167s Entering ResolveByKeep 167s 167s Calculating upgrade... 167s The following packages will be upgraded: 167s libc-bin libc-dev-bin libc6 libc6-dev locales 168s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Need to get 9530 kB of archives. 168s After this operation, 0 B of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 172s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 173s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 178s Preconfiguring packages ... 178s Fetched 9530 kB in 10s (956 kB/s) 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 178s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 178s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 179s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 179s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 179s Setting up libc6:arm64 (2.41-1ubuntu2) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 180s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 180s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 180s Setting up libc-bin (2.41-1ubuntu2) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 180s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 180s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 180s Setting up locales (2.41-1ubuntu2) ... 181s Generating locales (this might take a while)... 183s en_US.UTF-8... done 183s Generation complete. 183s Setting up libc-dev-bin (2.41-1ubuntu2) ... 183s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 183s Processing triggers for man-db (2.13.0-1) ... 184s Processing triggers for systemd (257.3-1ubuntu3) ... 185s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Starting pkgProblemResolver with broken count: 0 185s Starting 2 pkgProblemResolver with broken count: 0 186s Done 186s Solving dependencies... 186s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s autopkgtest [15:10:43]: rebooting testbed after setup commands that affected boot 210s autopkgtest [15:11:06]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 212s autopkgtest [15:11:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-grohmm 221s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-grohmm 1.40.3-2 (dsc) [2214 B] 221s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-grohmm 1.40.3-2 (tar) [4365 kB] 221s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-grohmm 1.40.3-2 (diff) [3640 B] 222s gpgv: Signature made Mon Jan 13 20:23:01 2025 UTC 222s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 222s gpgv: issuer "crusoe@debian.org" 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./r-bioc-grohmm_1.40.3-2.dsc: no acceptable signature found 222s autopkgtest [15:11:18]: testing package r-bioc-grohmm version 1.40.3-2 222s autopkgtest [15:11:18]: build not needed 224s autopkgtest [15:11:20]: test pkg-r-autopkgtest: preparing testbed 224s Reading package lists... 225s Building dependency tree... 225s Reading state information... 225s Starting pkgProblemResolver with broken count: 0 225s Starting 2 pkgProblemResolver with broken count: 0 225s Done 226s The following NEW packages will be installed: 226s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 226s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 226s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 226s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 226s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 226s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 226s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 226s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 226s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 226s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 226s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 226s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 226s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 226s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 226s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 226s libjs-popper.js libjs-prettify libjs-sifter.js 226s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 226s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 226s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 226s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 226s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 226s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 226s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 226s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 226s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 226s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 226s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 226s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 226s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings 226s r-bioc-delayedarray r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 226s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 226s r-bioc-grohmm r-bioc-iranges r-bioc-keggrest r-bioc-limma 226s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 226s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 226s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 226s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 226s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 226s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 226s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest 226s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 226s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 226s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 226s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 226s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix 226s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 226s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises 226s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 226s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass 226s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-sys 226s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 226s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 226s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 226s xdg-utils zip zlib1g-dev 226s 0 upgraded, 257 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 477 MB of archives. 226s After this operation, 1702 MB of additional disk space will be used. 226s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 227s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 227s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 239s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 239s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 239s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 239s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 239s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 239s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 240s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 243s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 244s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 248s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 249s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 251s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 254s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 273s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 274s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 274s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 274s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 276s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 288s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 288s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 288s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 288s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 288s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 288s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 288s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 289s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 289s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 289s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 289s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 289s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 290s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 293s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 296s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 296s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 296s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 306s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 306s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 306s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 306s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 306s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 306s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 306s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 306s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 306s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 306s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 307s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 316s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 316s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 316s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 316s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 316s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 316s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 316s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 317s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 317s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 317s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 317s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 317s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 318s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 318s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 318s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 329s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 329s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 329s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 329s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 329s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 329s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 329s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 329s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 330s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 330s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 330s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 330s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 330s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 330s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 330s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 330s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 330s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 331s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 331s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 331s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 331s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 331s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 332s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 336s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 336s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 336s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 336s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 337s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 337s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 337s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 337s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 337s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 337s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 337s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 337s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 338s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 338s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 338s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 339s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 339s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 340s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 340s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 340s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 340s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 340s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 340s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 340s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 340s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 341s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 342s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 342s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 342s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 342s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 342s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 342s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 342s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 343s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 343s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 343s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 343s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 343s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 343s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 343s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 343s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 343s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 343s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 368s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 368s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 368s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 368s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 368s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 368s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 368s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 392s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 392s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 392s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 392s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 393s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 393s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 393s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 393s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biobase arm64 2.66.0-2 [2331 kB] 395s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4vectors arm64 0.44.0+dfsg-2 [2054 kB] 397s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-iranges arm64 2.40.1-2 [2303 kB] 399s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-dbi all 1.2.3-1 [853 kB] 400s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit arm64 4.6.0+dfsg-1 [450 kB] 400s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bit64 arm64 4.6.0-1-1ubuntu2 [497 kB] 401s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 402s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 403s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 403s Get:154 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 403s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 404s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 404s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 404s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 404s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 404s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 404s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 404s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cpp11 all 0.5.2-1 [233 kB] 405s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rsqlite arm64 2.3.9-1 [1247 kB] 406s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-curl arm64 6.2.1+dfsg-1ubuntu1 [196 kB] 406s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 406s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 406s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sys arm64 3.4.3-1 [45.2 kB] 406s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-askpass arm64 1.2.1-1 [24.8 kB] 406s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-openssl arm64 2.3.2+dfsg-1 [406 kB] 406s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 406s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 407s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-png arm64 0.1-8-1build2 [40.1 kB] 407s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 407s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-xvector arm64 0.46.0-2 [618 kB] 407s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 407s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 417s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 421s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 421s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biostrings arm64 2.74.1+dfsg-2 [13.3 MB] 432s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 432s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 436s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 437s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-formatr all 1.14-2 [152 kB] 437s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 437s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 437s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 437s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 437s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-codetools all 0.2-20-1 [90.5 kB] 438s Get:189 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 438s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocparallel arm64 1.40.0-2 [1333 kB] 439s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 439s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 439s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 440s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 440s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 441s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 441s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 441s Get:198 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 447s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 448s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 448s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 448s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 448s Get:203 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 449s Get:204 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 454s Get:205 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 455s Get:206 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 455s Get:207 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 455s Get:208 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 456s Get:209 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 457s Get:210 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 457s Get:211 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 458s Get:212 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 458s Get:213 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 458s Get:214 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 459s Get:215 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 459s Get:216 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 459s Get:217 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 459s Get:218 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 460s Get:219 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 462s Get:220 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 463s Get:221 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 464s Get:222 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 465s Get:223 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 465s Get:224 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 465s Get:225 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 472s Get:226 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 494s Get:227 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 495s Get:228 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 550s Get:229 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 550s Get:230 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 551s Get:231 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lattice arm64 0.22-6-1 [1363 kB] 552s Get:232 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrix arm64 1.7-3-1 [4045 kB] 554s Get:233 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-matrixstats arm64 1.5.0-1 [496 kB] 555s Get:234 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 555s Get:235 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-abind all 1.4-8-1 [66.9 kB] 555s Get:236 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-s4arrays arm64 1.6.0+dfsg-2 [698 kB] 556s Get:237 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-sparsearray arm64 1.6.2+dfsg-1 [1369 kB] 557s Get:238 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-delayedarray arm64 0.32.0+dfsg-2 [2064 kB] 558s Get:239 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 559s Get:240 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-limma arm64 3.62.2+dfsg-1 [1968 kB] 560s Get:241 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-locfit arm64 1.5-9.12-1 [514 kB] 560s Get:242 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-edger arm64 4.4.2+dfsg-1 [1114 kB] 561s Get:243 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicranges arm64 1.58.0+dfsg-2 [2083 kB] 562s Get:244 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 563s Get:245 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bitops arm64 1.0-9-1 [30.2 kB] 563s Get:246 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rhtslib arm64 3.2.0+dfsg-2 [1429 kB] 564s Get:247 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rsamtools arm64 2.22.0+dfsg-2 [3668 kB] 567s Get:248 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicalignments arm64 1.42.0-2 [2164 kB] 568s Get:249 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 570s Get:250 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [806 kB] 570s Get:251 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rjson arm64 0.2.23-1 [104 kB] 571s Get:252 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 571s Get:253 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rtracklayer arm64 1.66.0-2 [5218 kB] 575s Get:254 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 576s Get:255 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mass arm64 7.3-64-1 [1110 kB] 577s Get:256 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-grohmm arm64 1.40.3-2 [4455 kB] 580s Get:257 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB] 614s Preconfiguring packages ... 614s Fetched 477 MB in 6min 27s (1232 kB/s) 614s Selecting previously unselected package libisl23:arm64. 614s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 614s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 614s Unpacking libisl23:arm64 (0.27-1) ... 614s Selecting previously unselected package libmpc3:arm64. 614s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 614s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 614s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 614s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 614s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 615s Selecting previously unselected package cpp-14. 615s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 615s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 615s Selecting previously unselected package cpp-aarch64-linux-gnu. 615s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 615s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 615s Selecting previously unselected package cpp. 615s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 615s Unpacking cpp (4:14.2.0-1ubuntu1) ... 615s Selecting previously unselected package libcc1-0:arm64. 615s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libgomp1:arm64. 615s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libgomp1:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libitm1:arm64. 615s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libitm1:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libasan8:arm64. 615s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libasan8:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package liblsan0:arm64. 615s Preparing to unpack .../010-liblsan0_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking liblsan0:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libtsan2:arm64. 615s Preparing to unpack .../011-libtsan2_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libtsan2:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libubsan1:arm64. 615s Preparing to unpack .../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libhwasan0:arm64. 615s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 615s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 615s Selecting previously unselected package libgcc-14-dev:arm64. 615s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 615s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 615s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 615s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 615s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 616s Selecting previously unselected package gcc-14. 616s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 616s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 616s Selecting previously unselected package gcc-aarch64-linux-gnu. 616s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 616s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 616s Selecting previously unselected package gcc. 616s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 616s Unpacking gcc (4:14.2.0-1ubuntu1) ... 616s Selecting previously unselected package libstdc++-14-dev:arm64. 616s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 616s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 616s Selecting previously unselected package g++-14-aarch64-linux-gnu. 616s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 616s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 616s Selecting previously unselected package g++-14. 616s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 616s Unpacking g++-14 (14.2.0-17ubuntu3) ... 616s Selecting previously unselected package g++-aarch64-linux-gnu. 616s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 616s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 616s Selecting previously unselected package g++. 616s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 616s Unpacking g++ (4:14.2.0-1ubuntu1) ... 616s Selecting previously unselected package build-essential. 616s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 616s Unpacking build-essential (12.10ubuntu1) ... 616s Selecting previously unselected package dctrl-tools. 616s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 616s Unpacking dctrl-tools (2.24-3build3) ... 617s Selecting previously unselected package fonts-dejavu-mono. 617s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 617s Unpacking fonts-dejavu-mono (2.37-8) ... 617s Selecting previously unselected package fonts-dejavu-core. 617s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 617s Unpacking fonts-dejavu-core (2.37-8) ... 617s Selecting previously unselected package fontconfig-config. 617s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 617s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 617s Selecting previously unselected package libfontconfig1:arm64. 617s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 617s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 617s Selecting previously unselected package fontconfig. 617s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 617s Unpacking fontconfig (2.15.0-2ubuntu1) ... 617s Selecting previously unselected package fonts-font-awesome. 617s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 617s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 617s Selecting previously unselected package fonts-glyphicons-halflings. 617s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 617s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 617s Selecting previously unselected package fonts-lmodern. 617s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 617s Unpacking fonts-lmodern (2.005-1) ... 617s Selecting previously unselected package fonts-mathjax. 617s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 617s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 617s Selecting previously unselected package libgfortran5:arm64. 617s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 617s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 617s Selecting previously unselected package libgfortran-14-dev:arm64. 617s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 617s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 617s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 617s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 617s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 618s Selecting previously unselected package gfortran-14. 618s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 618s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 618s Selecting previously unselected package gfortran-aarch64-linux-gnu. 618s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 618s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 618s Selecting previously unselected package gfortran. 618s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 618s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 618s Selecting previously unselected package icu-devtools. 618s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 618s Unpacking icu-devtools (76.1-1ubuntu2) ... 618s Selecting previously unselected package javascript-common. 618s Preparing to unpack .../042-javascript-common_12_all.deb ... 618s Unpacking javascript-common (12) ... 618s Selecting previously unselected package libio-string-perl. 618s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 618s Unpacking libio-string-perl (1.08-4) ... 618s Selecting previously unselected package liblatex-tounicode-perl. 618s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 618s Unpacking liblatex-tounicode-perl (0.55-1) ... 618s Selecting previously unselected package libbibtex-parser-perl. 618s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 618s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 618s Selecting previously unselected package libblas3:arm64. 618s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 618s Unpacking libblas3:arm64 (3.12.1-2) ... 618s Selecting previously unselected package libblas-dev:arm64. 618s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 618s Unpacking libblas-dev:arm64 (3.12.1-2) ... 618s Selecting previously unselected package libboost1.83-dev:arm64. 618s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 618s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 620s Selecting previously unselected package libboost-dev:arm64. 620s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 620s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 620s Selecting previously unselected package libbz2-dev:arm64. 620s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 620s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 620s Selecting previously unselected package libpixman-1-0:arm64. 620s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 620s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 620s Selecting previously unselected package libxcb-render0:arm64. 620s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 620s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 620s Selecting previously unselected package libxcb-shm0:arm64. 620s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 620s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 620s Selecting previously unselected package libxrender1:arm64. 620s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 620s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 620s Selecting previously unselected package libcairo2:arm64. 620s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 620s Unpacking libcairo2:arm64 (1.18.2-2) ... 620s Selecting previously unselected package libdatrie1:arm64. 620s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 620s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 620s Selecting previously unselected package libdeflate0:arm64. 620s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 620s Unpacking libdeflate0:arm64 (1.23-1) ... 620s Selecting previously unselected package libdeflate-dev:arm64. 620s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 620s Unpacking libdeflate-dev:arm64 (1.23-1) ... 620s Selecting previously unselected package libgraphite2-3:arm64. 620s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 620s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 620s Selecting previously unselected package libharfbuzz0b:arm64. 620s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 620s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 620s Selecting previously unselected package x11-common. 620s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 620s Unpacking x11-common (1:7.7+23ubuntu3) ... 620s Selecting previously unselected package libice6:arm64. 620s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 620s Unpacking libice6:arm64 (2:1.1.1-1) ... 620s Selecting previously unselected package libicu-dev:arm64. 620s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 620s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 621s Selecting previously unselected package libjpeg-turbo8:arm64. 621s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 621s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 621s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 621s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 621s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 621s Selecting previously unselected package libjpeg8:arm64. 621s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 621s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 621s Selecting previously unselected package libjpeg8-dev:arm64. 621s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 621s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 621s Selecting previously unselected package libjpeg-dev:arm64. 621s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 621s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 621s Selecting previously unselected package libjs-bootstrap. 621s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 621s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 621s Selecting previously unselected package libjs-popper.js. 621s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 621s Unpacking libjs-popper.js (1.16.1+ds-6) ... 621s Selecting previously unselected package libjs-bootstrap4. 621s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 621s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 621s Selecting previously unselected package libjs-d3. 621s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 621s Unpacking libjs-d3 (3.5.17-4) ... 621s Selecting previously unselected package libjs-es5-shim. 621s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 621s Unpacking libjs-es5-shim (4.6.7-2) ... 621s Selecting previously unselected package libjs-highlight.js. 621s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 621s 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(2024.20240313.70630+ds-5build2) ... 622s Selecting previously unselected package liblapack3:arm64. 622s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 622s Unpacking liblapack3:arm64 (3.12.1-2) ... 622s Selecting previously unselected package liblapack-dev:arm64. 622s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 622s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 622s Selecting previously unselected package liblerc4:arm64. 622s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 622s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 622s Selecting previously unselected package liblua5.4-0:arm64. 622s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 622s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 622s Selecting previously unselected package libmpfi0:arm64. 622s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 622s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 622s Selecting previously unselected package libncurses-dev:arm64. 622s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 622s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 622s Selecting previously unselected package libthai-data. 622s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 622s Unpacking libthai-data (0.1.29-2build1) ... 622s Selecting previously unselected package libthai0:arm64. 622s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 622s Unpacking libthai0:arm64 (0.1.29-2build1) ... 622s Selecting previously unselected package libpango-1.0-0:arm64. 622s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 622s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 622s Selecting previously unselected package libpangoft2-1.0-0:arm64. 622s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 622s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 622s Selecting previously unselected package libpangocairo-1.0-0:arm64. 622s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 622s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 622s Selecting previously unselected package libpaper2:arm64. 622s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 622s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 622s Selecting previously unselected package libpaper-utils. 623s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 623s Unpacking libpaper-utils (2.2.5-0.3) ... 623s Selecting previously unselected package libpcre2-16-0:arm64. 623s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 623s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 623s Selecting previously unselected package libpcre2-32-0:arm64. 623s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 623s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 623s Selecting previously unselected package libpcre2-posix3:arm64. 623s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 623s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 623s Selecting previously unselected package libpcre2-dev:arm64. 623s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 623s Unpacking libpcre2-dev:arm64 (10.45-1) ... 623s Selecting previously unselected package libpkgconf3:arm64. 623s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 623s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 623s Selecting previously unselected package zlib1g-dev:arm64. 623s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 623s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 623s Selecting previously unselected package libpng-dev:arm64. 623s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 623s Unpacking libpng-dev:arm64 (1.6.47-1) ... 623s Selecting previously unselected package libpotrace0:arm64. 623s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 623s Unpacking libpotrace0:arm64 (1.16-2build1) ... 623s Selecting previously unselected package libptexenc1:arm64. 623s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 623s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 623s Selecting previously unselected package libreadline-dev:arm64. 623s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 623s Unpacking libreadline-dev:arm64 (8.2-6) ... 623s Selecting previously unselected package libsharpyuv0:arm64. 623s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 623s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 623s Selecting previously unselected package libsm6:arm64. 623s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 623s Unpacking libsm6:arm64 (2:1.2.4-1) ... 623s Selecting previously unselected package libsynctex2:arm64. 623s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 623s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 623s Selecting previously unselected package libtcl8.6:arm64. 623s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 623s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 623s Selecting previously unselected package libteckit0:arm64. 623s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 623s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 623s Selecting previously unselected package libtexlua53-5:arm64. 623s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 623s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 623s Selecting previously unselected package libjbig0:arm64. 623s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 623s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 623s Selecting previously unselected package libwebp7:arm64. 623s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 623s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 623s Selecting previously unselected package libtiff6:arm64. 623s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 623s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 623s Selecting previously unselected package libxft2:arm64. 624s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 624s Unpacking libxft2:arm64 (2.3.6-1build1) ... 624s Selecting previously unselected package libxss1:arm64. 624s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 624s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 624s Selecting previously unselected package libtk8.6:arm64. 624s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 624s Unpacking libtk8.6:arm64 (8.6.16-1) ... 624s Selecting previously unselected package libxt6t64:arm64. 624s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 624s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 624s Selecting previously unselected package libxmu6:arm64. 624s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 624s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 624s Selecting previously unselected package libxpm4:arm64. 624s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 624s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 624s Selecting previously unselected package libxaw7:arm64. 624s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 624s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 624s Selecting previously unselected package libxi6:arm64. 624s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 624s Unpacking libxi6:arm64 (2:1.8.2-1) ... 624s Selecting previously unselected package libzzip-0-13t64:arm64. 624s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 624s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 624s Selecting previously unselected package zip. 624s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 624s Unpacking zip (3.0-14ubuntu2) ... 624s Selecting previously unselected package unzip. 624s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 624s Unpacking unzip (6.0-28ubuntu6) ... 624s Selecting previously unselected package xdg-utils. 624s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 624s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 624s Selecting previously unselected package r-base-core. 624s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 624s Unpacking r-base-core (4.4.3-1) ... 624s Selecting previously unselected package r-cran-littler. 624s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 624s Unpacking r-cran-littler (0.3.20-2) ... 624s Selecting previously unselected package littler. 624s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 624s Unpacking littler (0.3.20-2) ... 624s Selecting previously unselected package node-bootstrap-sass. 625s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 625s Unpacking node-bootstrap-sass (3.4.3-2) ... 625s Selecting previously unselected package node-html5shiv. 625s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 625s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 625s Selecting previously unselected package node-normalize.css. 625s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 625s Unpacking node-normalize.css (8.0.1-5) ... 625s Selecting previously unselected package pandoc-data. 625s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 625s Unpacking pandoc-data (3.1.11.1-3build1) ... 625s Selecting previously unselected package pandoc. 625s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 625s Unpacking pandoc (3.1.11.1+ds-2) ... 626s Selecting previously unselected package liblzma-dev:arm64. 626s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 626s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 626s Selecting previously unselected package pkgconf-bin. 626s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 626s 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r-bioc-biobase. 626s Preparing to unpack .../144-r-bioc-biobase_2.66.0-2_arm64.deb ... 626s Unpacking r-bioc-biobase (2.66.0-2) ... 626s Selecting previously unselected package r-bioc-s4vectors. 626s Preparing to unpack .../145-r-bioc-s4vectors_0.44.0+dfsg-2_arm64.deb ... 626s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 626s Selecting previously unselected package r-bioc-iranges. 626s Preparing to unpack .../146-r-bioc-iranges_2.40.1-2_arm64.deb ... 626s Unpacking r-bioc-iranges (2.40.1-2) ... 626s Selecting previously unselected package r-cran-dbi. 626s Preparing to unpack .../147-r-cran-dbi_1.2.3-1_all.deb ... 626s Unpacking r-cran-dbi (1.2.3-1) ... 626s Selecting previously unselected package r-cran-bit. 626s Preparing to unpack .../148-r-cran-bit_4.6.0+dfsg-1_arm64.deb ... 626s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 626s Selecting previously unselected package r-cran-bit64. 626s Preparing to unpack .../149-r-cran-bit64_4.6.0-1-1ubuntu2_arm64.deb ... 626s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 626s Selecting previously unselected package r-cran-rlang. 626s Preparing to unpack .../150-r-cran-rlang_1.1.5-1_arm64.deb ... 626s Unpacking r-cran-rlang (1.1.5-1) ... 626s Selecting previously unselected package r-cran-cli. 626s Preparing to unpack .../151-r-cran-cli_3.6.4-1_arm64.deb ... 626s Unpacking r-cran-cli (3.6.4-1) ... 626s Selecting previously unselected package r-cran-glue. 626s Preparing to unpack .../152-r-cran-glue_1.8.0-1_arm64.deb ... 626s Unpacking r-cran-glue (1.8.0-1) ... 626s Selecting previously unselected package r-cran-lifecycle. 626s Preparing to unpack .../153-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 626s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 626s Selecting previously unselected package r-cran-vctrs. 627s Preparing to unpack .../154-r-cran-vctrs_0.6.5-1_arm64.deb ... 627s Unpacking r-cran-vctrs (0.6.5-1) ... 627s Selecting previously unselected package r-cran-blob. 627s Preparing to unpack .../155-r-cran-blob_1.2.4-1_all.deb ... 627s Unpacking r-cran-blob (1.2.4-1) ... 627s Selecting previously unselected package r-cran-fastmap. 627s Preparing to unpack .../156-r-cran-fastmap_1.2.0-1_arm64.deb ... 627s Unpacking r-cran-fastmap (1.2.0-1) ... 627s Selecting previously unselected package r-cran-cachem. 627s Preparing to unpack .../157-r-cran-cachem_1.1.0-1_arm64.deb ... 627s Unpacking r-cran-cachem (1.1.0-1) ... 627s Selecting previously unselected package r-cran-memoise. 627s Preparing to unpack .../158-r-cran-memoise_2.0.1-1_all.deb ... 627s Unpacking r-cran-memoise (2.0.1-1) ... 627s Selecting previously unselected package r-cran-pkgconfig. 627s Preparing to unpack .../159-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 627s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 627s Selecting previously unselected package r-cran-plogr. 627s Preparing to unpack .../160-r-cran-plogr_0.2.0-3build1_all.deb ... 627s Unpacking r-cran-plogr (0.2.0-3build1) ... 627s Selecting previously unselected package r-cran-cpp11. 627s Preparing to unpack .../161-r-cran-cpp11_0.5.2-1_all.deb ... 627s Unpacking r-cran-cpp11 (0.5.2-1) ... 627s Selecting previously unselected package r-cran-rsqlite. 627s Preparing to unpack .../162-r-cran-rsqlite_2.3.9-1_arm64.deb ... 627s Unpacking r-cran-rsqlite (2.3.9-1) ... 627s Selecting previously unselected package r-cran-curl. 627s Preparing to unpack .../163-r-cran-curl_6.2.1+dfsg-1ubuntu1_arm64.deb ... 627s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 627s Selecting previously unselected package r-cran-jsonlite. 627s Preparing to unpack .../164-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 627s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 627s Selecting previously unselected package r-cran-mime. 627s Preparing to unpack .../165-r-cran-mime_0.12-2_arm64.deb ... 627s Unpacking r-cran-mime (0.12-2) ... 627s Selecting previously unselected package r-cran-sys. 627s Preparing to unpack .../166-r-cran-sys_3.4.3-1_arm64.deb ... 627s Unpacking r-cran-sys (3.4.3-1) ... 627s Selecting previously unselected package r-cran-askpass. 627s Preparing to unpack .../167-r-cran-askpass_1.2.1-1_arm64.deb ... 627s Unpacking r-cran-askpass (1.2.1-1) ... 627s Selecting previously unselected package r-cran-openssl. 627s Preparing to unpack .../168-r-cran-openssl_2.3.2+dfsg-1_arm64.deb ... 627s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 627s Selecting previously unselected package r-cran-r6. 627s Preparing to unpack .../169-r-cran-r6_2.6.1-1_all.deb ... 627s Unpacking r-cran-r6 (2.6.1-1) ... 627s Selecting previously unselected package r-cran-httr. 627s Preparing to unpack .../170-r-cran-httr_1.4.7+dfsg-1_all.deb ... 627s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 627s Selecting previously unselected package r-cran-png. 627s Preparing to unpack .../171-r-cran-png_0.1-8-1build2_arm64.deb ... 627s Unpacking r-cran-png (0.1-8-1build2) ... 627s Selecting previously unselected package r-bioc-zlibbioc. 627s Preparing to unpack .../172-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 627s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 627s Selecting previously unselected package r-bioc-xvector. 627s Preparing to unpack .../173-r-bioc-xvector_0.46.0-2_arm64.deb ... 627s Unpacking r-bioc-xvector (0.46.0-2) ... 627s Selecting previously unselected package r-bioc-ucsc.utils. 627s Preparing to unpack .../174-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 627s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 627s Selecting previously unselected package r-bioc-genomeinfodbdata. 627s Preparing to unpack .../175-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 627s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 628s Selecting previously unselected package r-bioc-genomeinfodb. 628s Preparing to unpack .../176-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 628s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 628s Selecting previously unselected package r-cran-crayon. 628s Preparing to unpack .../177-r-cran-crayon_1.5.3-1_all.deb ... 628s Unpacking r-cran-crayon (1.5.3-1) ... 628s Selecting previously unselected package r-bioc-biostrings. 628s Preparing to unpack .../178-r-bioc-biostrings_2.74.1+dfsg-2_arm64.deb ... 628s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 628s Selecting previously unselected package r-bioc-keggrest. 628s Preparing to unpack .../179-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 628s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 628s Selecting previously unselected package r-bioc-annotationdbi. 628s Preparing to unpack .../180-r-bioc-annotationdbi_1.68.0-2_all.deb ... 628s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 628s Selecting previously unselected package r-bioc-biocio. 628s Preparing to unpack .../181-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 628s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 628s Selecting previously unselected package r-cran-formatr. 628s Preparing to unpack .../182-r-cran-formatr_1.14-2_all.deb ... 628s Unpacking r-cran-formatr (1.14-2) ... 628s Selecting previously unselected package r-cran-lambda.r. 628s Preparing to unpack .../183-r-cran-lambda.r_1.2.4-2build1_all.deb ... 628s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 628s Selecting previously unselected package r-cran-futile.options. 628s Preparing to unpack .../184-r-cran-futile.options_1.0.1-3build1_all.deb ... 628s Unpacking r-cran-futile.options (1.0.1-3build1) ... 628s Selecting previously unselected package r-cran-futile.logger. 628s Preparing to unpack .../185-r-cran-futile.logger_1.4.3-4build1_all.deb ... 628s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 628s Selecting previously unselected package r-cran-snow. 628s Preparing to unpack .../186-r-cran-snow_1%3a0.4.4-2_all.deb ... 628s Unpacking r-cran-snow (1:0.4.4-2) ... 628s Selecting previously unselected package r-cran-codetools. 628s Preparing to unpack .../187-r-cran-codetools_0.2-20-1_all.deb ... 628s Unpacking r-cran-codetools (0.2-20-1) ... 628s Selecting previously unselected package r-cran-bh. 628s Preparing to unpack .../188-r-cran-bh_1.84.0-1_all.deb ... 628s Unpacking r-cran-bh (1.84.0-1) ... 628s Selecting previously unselected package r-bioc-biocparallel. 628s Preparing to unpack .../189-r-bioc-biocparallel_1.40.0-2_arm64.deb ... 628s Unpacking r-bioc-biocparallel (1.40.0-2) ... 628s Selecting previously unselected package r-cran-base64enc. 628s Preparing to unpack .../190-r-cran-base64enc_0.1-3-3_arm64.deb ... 628s Unpacking r-cran-base64enc (0.1-3-3) ... 628s Selecting previously unselected package r-cran-digest. 628s Preparing to unpack .../191-r-cran-digest_0.6.37-1_arm64.deb ... 628s Unpacking r-cran-digest (0.6.37-1) ... 628s Selecting previously unselected package r-cran-htmltools. 629s Preparing to unpack .../192-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 629s Unpacking r-cran-htmltools (0.5.8.1-1) ... 629s Selecting previously unselected package r-cran-evaluate. 629s Preparing to unpack .../193-r-cran-evaluate_1.0.3-1_all.deb ... 629s Unpacking r-cran-evaluate (1.0.3-1) ... 629s Selecting previously unselected package r-cran-xfun. 629s Preparing to unpack .../194-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 629s Unpacking r-cran-xfun (0.51+dfsg-1) ... 629s Selecting previously unselected package r-cran-highr. 629s Preparing to unpack .../195-r-cran-highr_0.11+dfsg-1_all.deb ... 629s Unpacking r-cran-highr (0.11+dfsg-1) ... 629s Selecting previously unselected package r-cran-yaml. 629s Preparing to unpack .../196-r-cran-yaml_2.3.10-1_arm64.deb ... 629s Unpacking r-cran-yaml (2.3.10-1) ... 629s Selecting previously unselected package libjs-mathjax. 629s Preparing to unpack .../197-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 629s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 629s Selecting previously unselected package r-cran-knitr. 629s Preparing to unpack .../198-r-cran-knitr_1.49+dfsg-1_all.deb ... 629s Unpacking r-cran-knitr (1.49+dfsg-1) ... 629s Selecting previously unselected package r-cran-jquerylib. 629s Preparing to unpack .../199-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 629s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 629s Selecting previously unselected package r-cran-fs. 629s Preparing to unpack .../200-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 629s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 630s Selecting previously unselected package r-cran-rappdirs. 630s Preparing to unpack .../201-r-cran-rappdirs_0.3.3-1_arm64.deb ... 630s Unpacking r-cran-rappdirs (0.3.3-1) ... 630s Selecting previously unselected package r-cran-sass. 630s Preparing to unpack .../202-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 630s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 630s Selecting previously unselected package r-cran-bslib. 630s Preparing to unpack .../203-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 630s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 630s Selecting previously unselected package r-cran-fontawesome. 630s Preparing to unpack .../204-r-cran-fontawesome_0.5.3-1_all.deb ... 630s Unpacking r-cran-fontawesome (0.5.3-1) ... 630s Selecting previously unselected package r-cran-tinytex. 630s Preparing to unpack .../205-r-cran-tinytex_0.56-1_all.deb ... 630s Unpacking r-cran-tinytex (0.56-1) ... 630s Selecting previously unselected package libjs-modernizr. 630s Preparing to unpack .../206-libjs-modernizr_3.13.0-0.1_all.deb ... 630s Unpacking libjs-modernizr (3.13.0-0.1) ... 630s Selecting previously unselected package r-cran-pkgkitten. 630s Preparing to unpack .../207-r-cran-pkgkitten_0.2.4-1_all.deb ... 630s Unpacking r-cran-pkgkitten (0.2.4-1) ... 630s Selecting previously unselected package r-cran-rcpp. 630s Preparing to unpack .../208-r-cran-rcpp_1.0.14-1_arm64.deb ... 630s Unpacking r-cran-rcpp (1.0.14-1) ... 630s Selecting previously unselected package r-cran-later. 630s Preparing to unpack .../209-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 630s Unpacking r-cran-later (1.4.1+dfsg-1) ... 630s Selecting previously unselected package r-cran-magrittr. 630s Preparing to unpack .../210-r-cran-magrittr_2.0.3-1_arm64.deb ... 630s Unpacking r-cran-magrittr (2.0.3-1) ... 630s Selecting previously unselected package r-cran-promises. 630s Preparing to unpack .../211-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 630s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 630s Selecting previously unselected package r-cran-httpuv. 630s Preparing to unpack .../212-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 630s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 630s Selecting previously unselected package r-cran-xtable. 630s Preparing to unpack .../213-r-cran-xtable_1%3a1.8-4-2_all.deb ... 630s Unpacking r-cran-xtable (1:1.8-4-2) ... 630s Selecting previously unselected package r-cran-sourcetools. 630s Preparing to unpack .../214-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 630s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 630s Selecting previously unselected package r-cran-withr. 630s Preparing to unpack .../215-r-cran-withr_3.0.2+dfsg-1_all.deb ... 630s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 631s Selecting previously unselected package r-cran-commonmark. 631s Preparing to unpack .../216-r-cran-commonmark_1.9.2-2_arm64.deb ... 631s Unpacking r-cran-commonmark (1.9.2-2) ... 631s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 631s Preparing to unpack .../217-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 631s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 631s Selecting previously unselected package r-cran-shiny. 631s Preparing to unpack .../218-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 631s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 631s Selecting previously unselected package r-cran-rmarkdown. 631s Preparing to unpack .../219-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 631s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 631s Selecting previously unselected package r-cran-bookdown. 631s Preparing to unpack .../220-r-cran-bookdown_0.42+dfsg-1_all.deb ... 631s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 631s Selecting previously unselected package r-cran-biocmanager. 631s Preparing to unpack .../221-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 631s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 631s Selecting previously unselected package tex-common. 631s Preparing to unpack .../222-tex-common_6.19_all.deb ... 631s Unpacking tex-common (6.19) ... 631s Selecting previously unselected package t1utils. 631s Preparing to unpack .../223-t1utils_1.41-4build3_arm64.deb ... 631s Unpacking t1utils (1.41-4build3) ... 631s Selecting previously unselected package texlive-binaries. 631s Preparing to unpack .../224-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 631s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 631s Selecting previously unselected package texlive-base. 631s Preparing to unpack .../225-texlive-base_2024.20250114-1_all.deb ... 631s Unpacking texlive-base (2024.20250114-1) ... 632s Selecting previously unselected package texlive-latex-base. 632s Preparing to unpack .../226-texlive-latex-base_2024.20250114-1_all.deb ... 632s Unpacking texlive-latex-base (2024.20250114-1) ... 633s Selecting previously unselected package texlive-bibtex-extra. 633s Preparing to unpack .../227-texlive-bibtex-extra_2024.20250114-1_all.deb ... 633s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 635s Selecting previously unselected package r-bioc-biocversion. 635s Preparing to unpack .../228-r-bioc-biocversion_3.20.0-2_all.deb ... 635s Unpacking r-bioc-biocversion (3.20.0-2) ... 635s Selecting previously unselected package r-bioc-biocstyle. 635s Preparing to unpack .../229-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 635s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 635s Selecting previously unselected package r-cran-lattice. 635s Preparing to unpack .../230-r-cran-lattice_0.22-6-1_arm64.deb ... 635s Unpacking r-cran-lattice (0.22-6-1) ... 635s Selecting previously unselected package r-cran-matrix. 635s Preparing to unpack .../231-r-cran-matrix_1.7-3-1_arm64.deb ... 635s Unpacking r-cran-matrix (1.7-3-1) ... 636s Selecting previously unselected package r-cran-matrixstats. 636s Preparing to unpack .../232-r-cran-matrixstats_1.5.0-1_arm64.deb ... 636s Unpacking r-cran-matrixstats (1.5.0-1) ... 636s Selecting previously unselected package r-bioc-matrixgenerics. 636s Preparing to unpack .../233-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 636s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 636s Selecting previously unselected package r-cran-abind. 636s Preparing to unpack .../234-r-cran-abind_1.4-8-1_all.deb ... 636s Unpacking r-cran-abind (1.4-8-1) ... 636s Selecting previously unselected package r-bioc-s4arrays. 636s Preparing to unpack .../235-r-bioc-s4arrays_1.6.0+dfsg-2_arm64.deb ... 636s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 636s Selecting previously unselected package r-bioc-sparsearray. 636s Preparing to unpack .../236-r-bioc-sparsearray_1.6.2+dfsg-1_arm64.deb ... 636s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 636s Selecting previously unselected package r-bioc-delayedarray. 636s Preparing to unpack .../237-r-bioc-delayedarray_0.32.0+dfsg-2_arm64.deb ... 636s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 636s Selecting previously unselected package r-cran-statmod. 636s Preparing to unpack .../238-r-cran-statmod_1.5.0-1_arm64.deb ... 636s Unpacking r-cran-statmod (1.5.0-1) ... 636s Selecting previously unselected package r-bioc-limma. 636s Preparing to unpack .../239-r-bioc-limma_3.62.2+dfsg-1_arm64.deb ... 636s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 636s Selecting previously unselected package r-cran-locfit. 636s Preparing to unpack .../240-r-cran-locfit_1.5-9.12-1_arm64.deb ... 636s Unpacking r-cran-locfit (1.5-9.12-1) ... 636s Selecting previously unselected package r-bioc-edger. 636s Preparing to unpack .../241-r-bioc-edger_4.4.2+dfsg-1_arm64.deb ... 636s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 636s Selecting previously unselected package r-bioc-genomicranges. 636s Preparing to unpack .../242-r-bioc-genomicranges_1.58.0+dfsg-2_arm64.deb ... 636s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 636s Selecting previously unselected package r-bioc-summarizedexperiment. 636s Preparing to unpack .../243-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 636s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 636s Selecting previously unselected package r-cran-bitops. 636s Preparing to unpack .../244-r-cran-bitops_1.0-9-1_arm64.deb ... 636s Unpacking r-cran-bitops (1.0-9-1) ... 636s Selecting previously unselected package r-bioc-rhtslib. 636s Preparing to unpack .../245-r-bioc-rhtslib_3.2.0+dfsg-2_arm64.deb ... 636s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 636s Selecting previously unselected package r-bioc-rsamtools. 636s Preparing to unpack .../246-r-bioc-rsamtools_2.22.0+dfsg-2_arm64.deb ... 636s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 637s Selecting previously unselected package r-bioc-genomicalignments. 637s Preparing to unpack .../247-r-bioc-genomicalignments_1.42.0-2_arm64.deb ... 637s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 637s Selecting previously unselected package r-cran-xml. 637s Preparing to unpack .../248-r-cran-xml_3.99-0.18-1_arm64.deb ... 637s Unpacking r-cran-xml (3.99-0.18-1) ... 637s Selecting previously unselected package r-cran-rcurl. 637s Preparing to unpack .../249-r-cran-rcurl_1.98-1.16+dfsg-1_arm64.deb ... 637s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 637s Selecting previously unselected package r-cran-rjson. 637s Preparing to unpack .../250-r-cran-rjson_0.2.23-1_arm64.deb ... 637s Unpacking r-cran-rjson (0.2.23-1) ... 637s Selecting previously unselected package r-cran-restfulr. 637s Preparing to unpack .../251-r-cran-restfulr_0.0.15-1_arm64.deb ... 637s Unpacking r-cran-restfulr (0.0.15-1) ... 637s Selecting previously unselected package r-bioc-rtracklayer. 637s Preparing to unpack .../252-r-bioc-rtracklayer_1.66.0-2_arm64.deb ... 637s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 637s Selecting previously unselected package 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642s Setting up texlive-base (2024.20250114-1) ... 643s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 643s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 643s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 644s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 644s Setting up r-cran-magrittr (2.0.3-1) ... 644s Setting up r-cran-rappdirs (0.3.3-1) ... 644s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 644s Setting up r-cran-littler (0.3.20-2) ... 644s Setting up r-cran-bh (1.84.0-1) ... 644s Setting up r-cran-fs (1.6.5+dfsg-1) ... 644s Setting up r-cran-rcpp (1.0.14-1) ... 644s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 644s Setting up r-cran-codetools (0.2-20-1) ... 644s Setting up r-bioc-biocgenerics (0.52.0-2) ... 644s Setting up r-cran-rlang (1.1.5-1) ... 644s Setting up r-cran-matrixstats (1.5.0-1) ... 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... 644s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 644s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 644s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 644s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 644s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 644s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 644s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 644s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 644s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 644s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 644s Setting up r-cran-bookdown (0.42+dfsg-1) ... 644s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 644s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 644s Setting up r-bioc-annotationdbi (1.68.0-2) ... 644s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 644s Setting up r-bioc-genomicalignments (1.42.0-2) ... 644s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ... 644s Setting up r-bioc-rtracklayer (1.66.0-2) ... 644s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 644s Setting up r-bioc-grohmm (1.40.3-2) ... 644s Processing triggers for libc-bin (2.41-1ubuntu2) ... 644s Processing triggers for man-db (2.13.0-1) ... 646s Processing triggers for install-info (7.1.1-1) ... 646s Processing triggers for tex-common (6.19) ... 647s Running updmap-sys. This may take some time... done. 647s Running mktexlsr /var/lib/texmf ... done. 647s Building format(s) --all. 685s This may take some time... done. 687s autopkgtest [15:19:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 687s autopkgtest [15:19:03]: test pkg-r-autopkgtest: [----------------------- 687s Test: Try to load the R library groHMM 687s 687s R version 4.4.3 (2025-02-28) -- "Trophy Case" 687s Copyright (C) 2025 The R Foundation for Statistical Computing 687s Platform: aarch64-unknown-linux-gnu 687s 687s R is free software and comes with ABSOLUTELY NO WARRANTY. 687s You are welcome to redistribute it under certain conditions. 687s Type 'license()' or 'licence()' for distribution details. 687s 687s R is a collaborative project with many contributors. 687s Type 'contributors()' for more information and 687s 'citation()' on how to cite R or R packages in publications. 687s 687s Type 'demo()' for some demos, 'help()' for on-line help, or 687s 'help.start()' for an HTML browser interface to help. 687s Type 'q()' to quit R. 687s 687s > library('groHMM') 687s Loading required package: MASS 687s Loading required package: parallel 687s Loading required package: S4Vectors 687s Loading required package: stats4 687s Loading required package: BiocGenerics 687s 687s Attaching package: ‘BiocGenerics’ 687s 687s The following objects are masked from ‘package:stats’: 687s 687s IQR, mad, sd, var, xtabs 687s 687s The following objects are masked from ‘package:base’: 687s 687s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 687s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 687s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 687s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 687s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 687s table, tapply, union, unique, unsplit, which.max, which.min 687s 688s 688s Attaching package: ‘S4Vectors’ 688s 688s The following object is masked from ‘package:utils’: 688s 688s findMatches 688s 688s The following objects are masked from ‘package:base’: 688s 688s expand.grid, I, unname 688s 688s Loading required package: IRanges 689s Loading required package: GenomeInfoDb 689s Loading required package: GenomicRanges 689s Loading required package: GenomicAlignments 689s Loading required package: SummarizedExperiment 689s Loading required package: MatrixGenerics 689s Loading required package: matrixStats 689s 689s Attaching package: ‘MatrixGenerics’ 689s 689s The following objects are masked from ‘package:matrixStats’: 689s 689s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 689s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 689s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 689s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 689s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 689s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 689s colWeightedMeans, colWeightedMedians, colWeightedSds, 689s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 689s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 689s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 689s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 689s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 689s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 689s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 689s rowWeightedSds, rowWeightedVars 689s 689s Loading required package: Biobase 690s Welcome to Bioconductor 690s 690s Vignettes contain introductory material; view with 690s 'browseVignettes()'. To cite Bioconductor, see 690s 'citation("Biobase")', and for packages 'citation("pkgname")'. 690s 690s 690s Attaching package: ‘Biobase’ 690s 690s The following object is masked from ‘package:MatrixGenerics’: 690s 690s rowMedians 690s 690s The following objects are masked from ‘package:matrixStats’: 690s 690s anyMissing, rowMedians 690s 692s Loading required package: Biostrings 692s Loading required package: XVector 693s 693s Attaching package: ‘Biostrings’ 693s 693s The following object is masked from ‘package:base’: 693s 693s strsplit 693s 693s Loading required package: Rsamtools 694s Loading required package: rtracklayer 695s > 695s > 695s Other tests are currently unsupported! 695s They will be progressively added. 695s autopkgtest [15:19:11]: test pkg-r-autopkgtest: -----------------------] 696s autopkgtest [15:19:12]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 696s pkg-r-autopkgtest PASS 697s autopkgtest [15:19:13]: @@@@@@@@@@@@@@@@@@@@ summary 697s pkg-r-autopkgtest PASS 718s nova [W] Using flock in prodstack6-arm64 718s Creating nova instance adt-plucky-arm64-r-bioc-grohmm-20250315-150736-juju-7f2275-prod-proposed-migration-environment-2-4b64351b-50d3-4ce8-8dc5-dea3ce37c325 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 718s nova [W] Timed out waiting for 99ac71af-5325-4d0a-a665-7ef144c83d8c to get deleted.