0s autopkgtest [15:21:42]: starting date and time: 2025-03-15 15:21:42+0000 0s autopkgtest [15:21:42]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:21:42]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5cuqo7si/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-graph --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-26.secgroup --name adt-plucky-arm64-r-bioc-graph-20250315-150725-juju-7f2275-prod-proposed-migration-environment-20-cd1014c2-aade-4cee-b7f7-3f11cc264916 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 115s autopkgtest [15:23:37]: testbed dpkg architecture: arm64 116s autopkgtest [15:23:38]: testbed apt version: 2.9.33 116s autopkgtest [15:23:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 116s autopkgtest [15:23:38]: testbed release detected to be: None 117s autopkgtest [15:23:39]: updating testbed package index (apt update) 117s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 118s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 118s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 118s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 118s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [78.2 kB] 118s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1976 B] 118s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 118s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [346 kB] 118s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [15.8 kB] 118s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 118s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [572 B] 118s Fetched 1094 kB in 1s (1136 kB/s) 119s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s Calculating upgrade... 121s Calculating upgrade... 121s The following packages will be upgraded: 121s python3-jinja2 strace 121s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Need to get 608 kB of archives. 121s After this operation, 11.3 kB of additional disk space will be used. 121s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 122s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 123s Fetched 608 kB in 1s (967 kB/s) 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 123s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 123s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 123s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 123s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 123s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 124s Setting up strace (6.13+ds-1ubuntu1) ... 124s Processing triggers for man-db (2.13.0-1) ... 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Solving dependencies... 125s The following packages will be REMOVED: 125s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 125s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 125s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 125s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 126s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 126s After this operation, 267 MB disk space will be freed. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 126s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 126s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 126s Removing libpython3.12t64:arm64 (3.12.9-1) ... 126s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 126s Removing libnsl2:arm64 (1.3.0-3build3) ... 126s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 126s Removing libunwind8:arm64 (1.6.2-3.1) ... 126s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 127s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 129s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 129s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 129s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 129s /etc/kernel/postrm.d/initramfs-tools: 129s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 129s /etc/kernel/postrm.d/zz-flash-kernel: 129s flash-kernel: Kernel 6.11.0-8-generic has been removed. 129s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 129s /etc/kernel/postrm.d/zz-update-grub: 129s Sourcing file `/etc/default/grub' 129s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 129s Generating grub configuration file ... 129s Found linux image: /boot/vmlinuz-6.14.0-10-generic 129s Found initrd image: /boot/initrd.img-6.14.0-10-generic 130s Warning: os-prober will not be executed to detect other bootable partitions. 130s Systems on them will not be added to the GRUB boot configuration. 130s Check GRUB_DISABLE_OS_PROBER documentation entry. 130s Adding boot menu entry for UEFI Firmware Settings ... 130s done 130s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 130s Processing triggers for libc-bin (2.41-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 130s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 130s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 131s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 131s autopkgtest [15:23:53]: upgrading testbed (apt dist-upgrade and autopurge) 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 134s Entering ResolveByKeep 134s 134s Calculating upgrade... 135s The following packages will be upgraded: 135s libc-bin libc-dev-bin libc6 libc6-dev locales 135s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Need to get 9530 kB of archives. 135s After this operation, 0 B of additional disk space will be used. 135s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 136s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 136s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 137s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 137s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 138s Preconfiguring packages ... 138s Fetched 9530 kB in 3s (3767 kB/s) 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 138s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 138s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 138s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 138s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 139s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Setting up libc6:arm64 (2.41-1ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 139s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 139s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 139s Setting up libc-bin (2.41-1ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 139s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 139s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 140s Setting up locales (2.41-1ubuntu2) ... 141s Generating locales (this might take a while)... 143s en_US.UTF-8... done 143s Generation complete. 143s Setting up libc-dev-bin (2.41-1ubuntu2) ... 143s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 143s Processing triggers for man-db (2.13.0-1) ... 144s Processing triggers for systemd (257.3-1ubuntu3) ... 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 146s Starting pkgProblemResolver with broken count: 0 146s Starting 2 pkgProblemResolver with broken count: 0 146s Done 146s Solving dependencies... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s autopkgtest [15:24:09]: rebooting testbed after setup commands that affected boot 169s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 177s autopkgtest [15:24:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 179s autopkgtest [15:24:41]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-graph 183s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (dsc) [2083 B] 183s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (tar) [1505 kB] 183s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-graph 1.84.1-1 (diff) [5492 B] 183s gpgv: Signature made Sun Jan 12 11:14:21 2025 UTC 183s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 183s gpgv: issuer "crusoe@debian.org" 183s gpgv: Can't check signature: No public key 183s dpkg-source: warning: cannot verify inline signature for ./r-bioc-graph_1.84.1-1.dsc: no acceptable signature found 183s autopkgtest [15:24:45]: testing package r-bioc-graph version 1.84.1-1 184s autopkgtest [15:24:46]: build not needed 186s autopkgtest [15:24:48]: test pkg-r-autopkgtest: preparing testbed 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 187s Starting pkgProblemResolver with broken count: 0 187s Starting 2 pkgProblemResolver with broken count: 0 187s Done 188s The following NEW packages will be installed: 188s build-essential cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu 188s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 188s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 188s g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 188s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-14 188s gfortran-14-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 188s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 188s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 188s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 188s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 188s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 188s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 188s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 188s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 188s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 188s libjs-popper.js libjs-prettify libjs-sifter.js 188s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 188s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 188s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 188s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 188s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 188s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 188s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 188s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 188s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 188s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 188s pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 188s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biocversion r-bioc-graph 188s r-bioc-rbgl r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown 188s r-cran-bslib r-cran-cachem r-cran-cli r-cran-cluster r-cran-commonmark 188s r-cran-crayon r-cran-digest r-cran-evaluate r-cran-fastmap 188s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 188s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 188s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime 188s r-cran-pkgkitten r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcpp 188s r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass r-cran-shiny 188s r-cran-sourcetools r-cran-sparsem r-cran-tinytex r-cran-withr r-cran-xfun 188s r-cran-xml r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 188s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 188s xdg-utils zip zlib1g-dev 188s 0 upgraded, 202 newly installed, 0 to remove and 0 not upgraded. 188s Need to get 329 MB of archives. 188s After this operation, 1193 MB of additional disk space will be used. 188s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 189s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 189s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [10.6 MB] 194s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-17ubuntu3 [1028 B] 194s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [5558 B] 194s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.2.0-1ubuntu1 [22.4 kB] 194s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 15-20250222-0ubuntu1 [44.2 kB] 194s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 15-20250222-0ubuntu1 [146 kB] 194s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 15-20250222-0ubuntu1 [28.0 kB] 194s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 15-20250222-0ubuntu1 [2924 kB] 196s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 15-20250222-0ubuntu1 [1319 kB] 196s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 15-20250222-0ubuntu1 [2694 kB] 197s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 15-20250222-0ubuntu1 [1178 kB] 198s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 15-20250222-0ubuntu1 [1642 kB] 199s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-17ubuntu3 [2593 kB] 200s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [20.9 MB] 210s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-17ubuntu3 [526 kB] 210s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1200 B] 210s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.2.0-1ubuntu1 [4998 B] 210s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-17ubuntu3 [2499 kB] 211s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [12.1 MB] 217s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-17ubuntu3 [21.8 kB] 217s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [956 B] 217s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.2.0-1ubuntu1 [1080 B] 217s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 217s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 dctrl-tools arm64 2.24-3build3 [103 kB] 217s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 217s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 217s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig-config arm64 2.15.0-2ubuntu1 [37.5 kB] 217s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 libfontconfig1 arm64 2.15.0-2ubuntu1 [144 kB] 217s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 fontconfig arm64 2.15.0-2ubuntu1 [191 kB] 217s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 218s Get:33 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 218s Get:34 http://ftpmaster.internal/ubuntu plucky/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 220s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 221s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 15-20250222-0ubuntu1 [444 kB] 221s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran-14-dev arm64 14.2.0-17ubuntu3 [498 kB] 222s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-17ubuntu3 [11.4 MB] 226s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-14 arm64 14.2.0-17ubuntu3 [13.6 kB] 226s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1ubuntu1 [1022 B] 226s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gfortran arm64 4:14.2.0-1ubuntu1 [1166 B] 226s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 icu-devtools arm64 76.1-1ubuntu2 [213 kB] 226s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 javascript-common all 12 [5216 B] 226s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 226s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 226s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 226s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 226s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas-dev arm64 3.12.1-2 [126 kB] 226s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost1.83-dev arm64 1.83.0-4.1ubuntu2 [10.7 MB] 231s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libboost-dev arm64 1.83.0.2ubuntu1 [4468 B] 231s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libbz2-dev arm64 1.0.8-6 [36.1 kB] 231s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 231s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 231s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 231s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 231s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libcairo2 arm64 1.18.2-2 [560 kB] 231s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libdatrie1 arm64 0.2.13-3build1 [19.2 kB] 231s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 231s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libdeflate-dev arm64 1.23-1 [53.7 kB] 231s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 231s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 232s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 232s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libice6 arm64 2:1.1.1-1 [42.3 kB] 232s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libicu-dev arm64 76.1-1ubuntu2 [12.2 MB] 237s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 237s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-3ubuntu2 [306 kB] 237s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 237s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 237s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 237s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 237s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 237s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 237s Get:73 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 237s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 237s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 237s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 237s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 237s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 237s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 237s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 238s Get:81 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 238s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 238s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 238s Get:84 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 238s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-5build2 [64.3 kB] 238s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 239s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack-dev arm64 3.12.1-2 [4439 kB] 241s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 241s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 liblua5.4-0 arm64 5.4.7-1 [158 kB] 241s Get:90 http://ftpmaster.internal/ubuntu plucky/universe arm64 libmpfi0 arm64 1.5.4+ds-4 [35.3 kB] 241s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 libncurses-dev arm64 6.5+20250216-2 [389 kB] 241s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai-data all 0.1.29-2build1 [158 kB] 241s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 libthai0 arm64 0.1.29-2build1 [18.2 kB] 241s Get:94 http://ftpmaster.internal/ubuntu plucky/main arm64 libpango-1.0-0 arm64 1.56.2-1 [237 kB] 241s Get:95 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangoft2-1.0-0 arm64 1.56.2-1 [49.5 kB] 241s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpangocairo-1.0-0 arm64 1.56.2-1 [27.6 kB] 241s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper2 arm64 2.2.5-0.3 [17.3 kB] 241s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpaper-utils arm64 2.2.5-0.3 [15.4 kB] 241s Get:99 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-16-0 arm64 10.45-1 [222 kB] 241s Get:100 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-32-0 arm64 10.45-1 [210 kB] 241s Get:101 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-posix3 arm64 10.45-1 [7084 B] 242s Get:102 http://ftpmaster.internal/ubuntu plucky/main arm64 libpcre2-dev arm64 10.45-1 [768 kB] 242s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 243s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 243s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 libpng-dev arm64 1.6.47-1 [269 kB] 244s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 libpotrace0 arm64 1.16-2build1 [16.0 kB] 244s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-5build2 [41.7 kB] 244s Get:108 http://ftpmaster.internal/ubuntu plucky/main arm64 libreadline-dev arm64 8.2-6 [179 kB] 244s Get:109 http://ftpmaster.internal/ubuntu plucky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 244s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 libsm6 arm64 2:1.2.4-1 [16.4 kB] 244s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-5build2 [60.3 kB] 244s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 245s Get:113 http://ftpmaster.internal/ubuntu plucky/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 245s Get:114 http://ftpmaster.internal/ubuntu plucky/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-5build2 [122 kB] 245s Get:115 http://ftpmaster.internal/ubuntu plucky/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 245s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 246s Get:117 http://ftpmaster.internal/ubuntu plucky/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 246s Get:118 http://ftpmaster.internal/ubuntu plucky/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 246s Get:119 http://ftpmaster.internal/ubuntu plucky/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 246s Get:120 http://ftpmaster.internal/ubuntu plucky/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 247s Get:121 http://ftpmaster.internal/ubuntu plucky/main arm64 libxt6t64 arm64 1:1.2.1-1.2build1 [168 kB] 247s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 libxmu6 arm64 2:1.1.3-3build2 [47.5 kB] 247s Get:123 http://ftpmaster.internal/ubuntu plucky/main arm64 libxpm4 arm64 1:3.5.17-1build2 [35.1 kB] 247s Get:124 http://ftpmaster.internal/ubuntu plucky/main arm64 libxaw7 arm64 2:1.0.16-1 [184 kB] 247s Get:125 http://ftpmaster.internal/ubuntu plucky/main arm64 libxi6 arm64 2:1.8.2-1 [32.4 kB] 247s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 libzzip-0-13t64 arm64 0.13.78+dfsg.1-0.1 [30.8 kB] 247s Get:127 http://ftpmaster.internal/ubuntu plucky/main arm64 zip arm64 3.0-14ubuntu2 [173 kB] 247s Get:128 http://ftpmaster.internal/ubuntu plucky/main arm64 unzip arm64 6.0-28ubuntu6 [178 kB] 247s Get:129 http://ftpmaster.internal/ubuntu plucky/main arm64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 247s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-core arm64 4.4.3-1 [28.4 MB] 278s Get:131 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-littler arm64 0.3.20-2 [96.1 kB] 278s Get:132 http://ftpmaster.internal/ubuntu plucky/universe arm64 littler all 0.3.20-2 [2554 B] 278s Get:133 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 278s Get:134 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 278s Get:135 http://ftpmaster.internal/ubuntu plucky/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 278s Get:136 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 278s Get:137 http://ftpmaster.internal/ubuntu plucky/universe arm64 pandoc arm64 3.1.11.1+ds-2 [28.1 MB] 305s Get:138 http://ftpmaster.internal/ubuntu plucky/main arm64 liblzma-dev arm64 5.6.4-1 [180 kB] 305s Get:139 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 305s Get:140 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 305s Get:141 http://ftpmaster.internal/ubuntu plucky/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3 [201 kB] 305s Get:142 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-base-dev all 4.4.3-1 [4176 B] 305s Get:143 http://ftpmaster.internal/ubuntu plucky/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 305s Get:144 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 306s Get:145 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 306s Get:146 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-digest arm64 0.6.37-1 [200 kB] 306s Get:147 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fastmap arm64 1.2.0-1 [70.6 kB] 306s Get:148 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rlang arm64 1.1.5-1 [1707 kB] 307s Get:149 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-htmltools arm64 0.5.8.1-1 [373 kB] 308s Get:150 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-evaluate all 1.0.3-1 [114 kB] 308s Get:151 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xfun arm64 0.51+dfsg-1 [573 kB] 308s Get:152 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 308s Get:153 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-yaml arm64 2.3.10-1 [108 kB] 308s Get:154 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 313s Get:155 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 314s Get:156 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cachem arm64 1.1.0-1 [74.1 kB] 314s Get:157 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 314s Get:158 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-jsonlite arm64 1.9.1+dfsg-1 [445 kB] 314s Get:159 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cli arm64 3.6.4-1 [1374 kB] 315s Get:160 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-glue arm64 1.8.0-1 [163 kB] 315s Get:161 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 316s Get:162 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 316s Get:163 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-mime arm64 0.12-2 [35.8 kB] 316s Get:164 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fs arm64 1.6.5+dfsg-1 [244 kB] 316s Get:165 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-r6 all 2.6.1-1 [101 kB] 316s Get:166 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 316s Get:167 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sass arm64 0.4.9+dfsg-1 [957 kB] 317s Get:168 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 320s Get:169 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 321s Get:170 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-tinytex all 0.56-1 [148 kB] 321s Get:171 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-modernizr all 3.13.0-0.1 [101 kB] 321s Get:172 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 321s Get:173 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rcpp arm64 1.0.14-1 [1978 kB] 322s Get:174 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-later arm64 1.4.1+dfsg-1 [141 kB] 323s Get:175 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 323s Get:176 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-promises arm64 1.3.2+dfsg-1 [290 kB] 323s Get:177 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-httpuv arm64 1.6.15+dfsg-1 [489 kB] 323s Get:178 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 324s Get:179 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 324s Get:180 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-crayon all 1.5.3-1 [165 kB] 324s Get:181 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 324s Get:182 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-commonmark arm64 1.9.2-2 [129 kB] 324s Get:183 http://ftpmaster.internal/ubuntu plucky/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 324s Get:184 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 326s Get:185 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 327s Get:186 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 328s Get:187 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 328s Get:188 http://ftpmaster.internal/ubuntu plucky/universe arm64 tex-common all 6.19 [29.8 kB] 328s Get:189 http://ftpmaster.internal/ubuntu plucky/main arm64 t1utils arm64 1.41-4build3 [61.0 kB] 328s Get:190 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-binaries arm64 2024.20240313.70630+ds-5build2 [8328 kB] 334s Get:191 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-base all 2024.20250114-1 [22.5 MB] 350s Get:192 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-latex-base all 2024.20250114-1 [1264 kB] 350s Get:193 http://ftpmaster.internal/ubuntu plucky/universe arm64 texlive-bibtex-extra all 2024.20250114-1 [79.5 MB] 419s Get:194 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 419s Get:195 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 420s Get:196 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-graph arm64 1.84.1-1 [1297 kB] 421s Get:197 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 422s Get:198 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-bioc-rbgl arm64 1.82.0+dfsg-2 [562 kB] 423s Get:199 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-cluster arm64 2.1.8-1 [568 kB] 423s Get:200 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 424s Get:201 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-sparsem arm64 1.84-2-1 [812 kB] 425s Get:202 http://ftpmaster.internal/ubuntu plucky/universe arm64 r-cran-xml arm64 3.99-0.18-1 [1745 kB] 427s Preconfiguring packages ... 427s Fetched 329 MB in 3min 59s (1380 kB/s) 428s Selecting previously unselected package libisl23:arm64. 428s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 428s Preparing to unpack .../000-libisl23_0.27-1_arm64.deb ... 428s Unpacking libisl23:arm64 (0.27-1) ... 428s Selecting previously unselected package libmpc3:arm64. 428s Preparing to unpack .../001-libmpc3_1.3.1-1build2_arm64.deb ... 428s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 428s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 428s Preparing to unpack .../002-cpp-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 428s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 428s Selecting previously unselected package cpp-14. 428s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_arm64.deb ... 428s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 428s Selecting previously unselected package cpp-aarch64-linux-gnu. 428s Preparing to unpack .../004-cpp-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 428s Unpacking cpp-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 428s Selecting previously unselected package cpp. 428s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_arm64.deb ... 428s Unpacking cpp (4:14.2.0-1ubuntu1) ... 429s Selecting previously unselected package libcc1-0:arm64. 429s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_arm64.deb ... 429s Unpacking libcc1-0:arm64 (15-20250222-0ubuntu1) ... 429s Selecting previously unselected package libgomp1:arm64. 429s Preparing to unpack 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.../012-libubsan1_15-20250222-0ubuntu1_arm64.deb ... 429s Unpacking libubsan1:arm64 (15-20250222-0ubuntu1) ... 429s Selecting previously unselected package libhwasan0:arm64. 429s Preparing to unpack .../013-libhwasan0_15-20250222-0ubuntu1_arm64.deb ... 429s Unpacking libhwasan0:arm64 (15-20250222-0ubuntu1) ... 429s Selecting previously unselected package libgcc-14-dev:arm64. 429s Preparing to unpack .../014-libgcc-14-dev_14.2.0-17ubuntu3_arm64.deb ... 429s Unpacking libgcc-14-dev:arm64 (14.2.0-17ubuntu3) ... 429s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 429s Preparing to unpack .../015-gcc-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 429s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 430s Selecting previously unselected package gcc-14. 430s Preparing to unpack .../016-gcc-14_14.2.0-17ubuntu3_arm64.deb ... 430s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 430s Selecting previously unselected package gcc-aarch64-linux-gnu. 430s Preparing to unpack .../017-gcc-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 430s Unpacking gcc-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 430s Selecting previously unselected package gcc. 430s Preparing to unpack .../018-gcc_4%3a14.2.0-1ubuntu1_arm64.deb ... 430s Unpacking gcc (4:14.2.0-1ubuntu1) ... 430s Selecting previously unselected package libstdc++-14-dev:arm64. 430s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_arm64.deb ... 430s Unpacking libstdc++-14-dev:arm64 (14.2.0-17ubuntu3) ... 431s Selecting previously unselected package g++-14-aarch64-linux-gnu. 431s Preparing to unpack .../020-g++-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 431s Unpacking g++-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 431s Selecting previously unselected package g++-14. 431s Preparing to unpack .../021-g++-14_14.2.0-17ubuntu3_arm64.deb ... 431s Unpacking g++-14 (14.2.0-17ubuntu3) ... 431s Selecting previously unselected package g++-aarch64-linux-gnu. 431s Preparing to unpack .../022-g++-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 431s Unpacking g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 431s Selecting previously unselected package g++. 431s Preparing to unpack .../023-g++_4%3a14.2.0-1ubuntu1_arm64.deb ... 431s Unpacking g++ (4:14.2.0-1ubuntu1) ... 431s Selecting previously unselected package build-essential. 431s Preparing to unpack .../024-build-essential_12.10ubuntu1_arm64.deb ... 431s Unpacking build-essential (12.10ubuntu1) ... 431s Selecting previously unselected package dctrl-tools. 431s Preparing to unpack .../025-dctrl-tools_2.24-3build3_arm64.deb ... 431s Unpacking dctrl-tools (2.24-3build3) ... 432s Selecting previously unselected package fonts-dejavu-mono. 432s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 432s Unpacking fonts-dejavu-mono (2.37-8) ... 432s Selecting previously unselected package fonts-dejavu-core. 432s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 432s Unpacking fonts-dejavu-core (2.37-8) ... 432s Selecting previously unselected package fontconfig-config. 432s Preparing to unpack .../028-fontconfig-config_2.15.0-2ubuntu1_arm64.deb ... 432s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 432s Selecting previously unselected package libfontconfig1:arm64. 432s Preparing to unpack .../029-libfontconfig1_2.15.0-2ubuntu1_arm64.deb ... 432s Unpacking libfontconfig1:arm64 (2.15.0-2ubuntu1) ... 432s Selecting previously unselected package fontconfig. 432s Preparing to unpack .../030-fontconfig_2.15.0-2ubuntu1_arm64.deb ... 432s Unpacking fontconfig (2.15.0-2ubuntu1) ... 432s Selecting previously unselected package fonts-font-awesome. 432s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 432s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 433s Selecting previously unselected package fonts-glyphicons-halflings. 433s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 433s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 433s Selecting previously unselected package fonts-lmodern. 433s Preparing to unpack .../033-fonts-lmodern_2.005-1_all.deb ... 433s Unpacking fonts-lmodern (2.005-1) ... 433s Selecting previously unselected package fonts-mathjax. 433s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 433s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 433s Selecting previously unselected package libgfortran5:arm64. 433s Preparing to unpack .../035-libgfortran5_15-20250222-0ubuntu1_arm64.deb ... 433s Unpacking libgfortran5:arm64 (15-20250222-0ubuntu1) ... 433s Selecting previously unselected package libgfortran-14-dev:arm64. 433s Preparing to unpack .../036-libgfortran-14-dev_14.2.0-17ubuntu3_arm64.deb ... 433s Unpacking libgfortran-14-dev:arm64 (14.2.0-17ubuntu3) ... 433s Selecting previously unselected package gfortran-14-aarch64-linux-gnu. 433s Preparing to unpack .../037-gfortran-14-aarch64-linux-gnu_14.2.0-17ubuntu3_arm64.deb ... 433s Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 434s Selecting previously unselected package gfortran-14. 434s Preparing to unpack .../038-gfortran-14_14.2.0-17ubuntu3_arm64.deb ... 434s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 434s Selecting previously unselected package gfortran-aarch64-linux-gnu. 434s Preparing to unpack .../039-gfortran-aarch64-linux-gnu_4%3a14.2.0-1ubuntu1_arm64.deb ... 434s Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 434s Selecting previously unselected package gfortran. 434s Preparing to unpack .../040-gfortran_4%3a14.2.0-1ubuntu1_arm64.deb ... 434s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 434s Selecting previously unselected package icu-devtools. 434s Preparing to unpack .../041-icu-devtools_76.1-1ubuntu2_arm64.deb ... 434s Unpacking icu-devtools (76.1-1ubuntu2) ... 434s Selecting previously unselected package javascript-common. 434s Preparing to unpack .../042-javascript-common_12_all.deb ... 434s Unpacking javascript-common (12) ... 434s Selecting previously unselected package libio-string-perl. 434s Preparing to unpack .../043-libio-string-perl_1.08-4_all.deb ... 434s Unpacking libio-string-perl (1.08-4) ... 434s Selecting previously unselected package liblatex-tounicode-perl. 434s Preparing to unpack .../044-liblatex-tounicode-perl_0.55-1_all.deb ... 434s Unpacking liblatex-tounicode-perl (0.55-1) ... 434s Selecting previously unselected package libbibtex-parser-perl. 434s Preparing to unpack .../045-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 434s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 434s Selecting previously unselected package libblas3:arm64. 434s Preparing to unpack .../046-libblas3_3.12.1-2_arm64.deb ... 434s Unpacking libblas3:arm64 (3.12.1-2) ... 434s Selecting previously unselected package libblas-dev:arm64. 434s Preparing to unpack .../047-libblas-dev_3.12.1-2_arm64.deb ... 434s Unpacking libblas-dev:arm64 (3.12.1-2) ... 434s Selecting previously unselected package libboost1.83-dev:arm64. 434s Preparing to unpack .../048-libboost1.83-dev_1.83.0-4.1ubuntu2_arm64.deb ... 434s Unpacking libboost1.83-dev:arm64 (1.83.0-4.1ubuntu2) ... 437s Selecting previously unselected package libboost-dev:arm64. 437s Preparing to unpack .../049-libboost-dev_1.83.0.2ubuntu1_arm64.deb ... 437s Unpacking libboost-dev:arm64 (1.83.0.2ubuntu1) ... 437s Selecting previously unselected package libbz2-dev:arm64. 437s Preparing to unpack .../050-libbz2-dev_1.0.8-6_arm64.deb ... 437s Unpacking libbz2-dev:arm64 (1.0.8-6) ... 437s Selecting previously unselected package libpixman-1-0:arm64. 437s Preparing to unpack .../051-libpixman-1-0_0.44.0-3_arm64.deb ... 437s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 437s Selecting previously unselected package libxcb-render0:arm64. 437s Preparing to unpack .../052-libxcb-render0_1.17.0-2_arm64.deb ... 437s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 437s Selecting previously unselected package libxcb-shm0:arm64. 437s Preparing to unpack .../053-libxcb-shm0_1.17.0-2_arm64.deb ... 437s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 437s Selecting previously unselected package libxrender1:arm64. 437s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 437s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 437s Selecting previously unselected package libcairo2:arm64. 437s Preparing to unpack .../055-libcairo2_1.18.2-2_arm64.deb ... 437s Unpacking libcairo2:arm64 (1.18.2-2) ... 437s Selecting previously unselected package libdatrie1:arm64. 437s Preparing to unpack .../056-libdatrie1_0.2.13-3build1_arm64.deb ... 437s Unpacking libdatrie1:arm64 (0.2.13-3build1) ... 437s Selecting previously unselected package libdeflate0:arm64. 437s Preparing to unpack .../057-libdeflate0_1.23-1_arm64.deb ... 437s Unpacking libdeflate0:arm64 (1.23-1) ... 437s Selecting previously unselected package libdeflate-dev:arm64. 437s Preparing to unpack .../058-libdeflate-dev_1.23-1_arm64.deb ... 437s Unpacking libdeflate-dev:arm64 (1.23-1) ... 437s Selecting previously unselected package libgraphite2-3:arm64. 437s Preparing to unpack .../059-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 437s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 437s Selecting previously unselected package libharfbuzz0b:arm64. 437s Preparing to unpack .../060-libharfbuzz0b_10.2.0-1_arm64.deb ... 437s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 438s Selecting previously unselected package x11-common. 438s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu3_all.deb ... 438s Unpacking x11-common (1:7.7+23ubuntu3) ... 438s Selecting previously unselected package libice6:arm64. 438s Preparing to unpack .../062-libice6_2%3a1.1.1-1_arm64.deb ... 438s Unpacking libice6:arm64 (2:1.1.1-1) ... 438s Selecting previously unselected package libicu-dev:arm64. 438s Preparing to unpack .../063-libicu-dev_76.1-1ubuntu2_arm64.deb ... 438s Unpacking libicu-dev:arm64 (76.1-1ubuntu2) ... 438s Selecting previously unselected package libjpeg-turbo8:arm64. 438s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 438s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 438s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 438s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-3ubuntu2_arm64.deb ... 438s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-3ubuntu2) ... 438s Selecting previously unselected package libjpeg8:arm64. 438s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 438s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 438s Selecting previously unselected package libjpeg8-dev:arm64. 438s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 438s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 438s Selecting previously unselected package libjpeg-dev:arm64. 438s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 438s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 439s Selecting previously unselected package libjs-bootstrap. 439s Preparing to unpack .../069-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 439s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 439s Selecting previously unselected package libjs-popper.js. 439s Preparing to unpack .../070-libjs-popper.js_1.16.1+ds-6_all.deb ... 439s Unpacking libjs-popper.js (1.16.1+ds-6) ... 439s Selecting previously unselected package libjs-bootstrap4. 439s Preparing to unpack .../071-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 439s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 439s Selecting previously unselected package libjs-d3. 439s Preparing to unpack .../072-libjs-d3_3.5.17-4_all.deb ... 439s Unpacking libjs-d3 (3.5.17-4) ... 439s Selecting previously unselected package libjs-es5-shim. 439s Preparing to unpack .../073-libjs-es5-shim_4.6.7-2_all.deb ... 439s Unpacking libjs-es5-shim (4.6.7-2) ... 439s Selecting previously unselected package libjs-highlight.js. 439s Preparing to unpack .../074-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 439s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 439s Selecting previously unselected package libjs-jquery. 439s Preparing to unpack .../075-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 439s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 439s Selecting previously unselected package libjs-jquery-datatables. 439s Preparing to unpack .../076-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 439s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 439s Selecting previously unselected package libjs-sifter.js. 439s Preparing to unpack .../077-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 439s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 439s Selecting previously unselected package libjs-microplugin.js. 439s Preparing to unpack .../078-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 439s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 439s Selecting previously unselected package libjs-jquery-selectize.js. 439s Preparing to unpack .../079-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2024.20240313.70630+ds-5build2) ... 440s Selecting previously unselected package liblapack3:arm64. 440s Preparing to unpack .../085-liblapack3_3.12.1-2_arm64.deb ... 440s Unpacking liblapack3:arm64 (3.12.1-2) ... 440s Selecting previously unselected package liblapack-dev:arm64. 440s Preparing to unpack .../086-liblapack-dev_3.12.1-2_arm64.deb ... 440s Unpacking liblapack-dev:arm64 (3.12.1-2) ... 440s Selecting previously unselected package liblerc4:arm64. 440s Preparing to unpack .../087-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 440s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 440s Selecting previously unselected package liblua5.4-0:arm64. 440s Preparing to unpack .../088-liblua5.4-0_5.4.7-1_arm64.deb ... 440s Unpacking liblua5.4-0:arm64 (5.4.7-1) ... 440s Selecting previously unselected package libmpfi0:arm64. 440s Preparing to unpack .../089-libmpfi0_1.5.4+ds-4_arm64.deb ... 440s Unpacking libmpfi0:arm64 (1.5.4+ds-4) ... 441s Selecting previously unselected package libncurses-dev:arm64. 441s Preparing to unpack .../090-libncurses-dev_6.5+20250216-2_arm64.deb ... 441s Unpacking libncurses-dev:arm64 (6.5+20250216-2) ... 441s Selecting previously unselected package libthai-data. 441s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 441s Unpacking libthai-data (0.1.29-2build1) ... 441s Selecting previously unselected package libthai0:arm64. 441s Preparing to unpack .../092-libthai0_0.1.29-2build1_arm64.deb ... 441s Unpacking libthai0:arm64 (0.1.29-2build1) ... 441s Selecting previously unselected package libpango-1.0-0:arm64. 441s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_arm64.deb ... 441s Unpacking libpango-1.0-0:arm64 (1.56.2-1) ... 441s Selecting previously unselected package libpangoft2-1.0-0:arm64. 441s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_arm64.deb ... 441s Unpacking libpangoft2-1.0-0:arm64 (1.56.2-1) ... 441s Selecting previously unselected package libpangocairo-1.0-0:arm64. 441s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_arm64.deb ... 441s Unpacking libpangocairo-1.0-0:arm64 (1.56.2-1) ... 441s Selecting previously unselected package libpaper2:arm64. 441s Preparing to unpack .../096-libpaper2_2.2.5-0.3_arm64.deb ... 441s Unpacking libpaper2:arm64 (2.2.5-0.3) ... 441s Selecting previously unselected package libpaper-utils. 441s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_arm64.deb ... 441s Unpacking libpaper-utils (2.2.5-0.3) ... 441s Selecting previously unselected package libpcre2-16-0:arm64. 441s Preparing to unpack .../098-libpcre2-16-0_10.45-1_arm64.deb ... 441s Unpacking libpcre2-16-0:arm64 (10.45-1) ... 441s Selecting previously unselected package libpcre2-32-0:arm64. 441s Preparing to unpack .../099-libpcre2-32-0_10.45-1_arm64.deb ... 441s Unpacking libpcre2-32-0:arm64 (10.45-1) ... 441s Selecting previously unselected package libpcre2-posix3:arm64. 441s Preparing to unpack .../100-libpcre2-posix3_10.45-1_arm64.deb ... 441s Unpacking libpcre2-posix3:arm64 (10.45-1) ... 441s Selecting previously unselected package libpcre2-dev:arm64. 441s Preparing to unpack .../101-libpcre2-dev_10.45-1_arm64.deb ... 441s Unpacking libpcre2-dev:arm64 (10.45-1) ... 442s Selecting previously unselected package libpkgconf3:arm64. 442s Preparing to unpack .../102-libpkgconf3_1.8.1-4_arm64.deb ... 442s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 442s Selecting previously unselected package zlib1g-dev:arm64. 442s Preparing to unpack .../103-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 442s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 442s Selecting previously unselected package libpng-dev:arm64. 442s Preparing to unpack .../104-libpng-dev_1.6.47-1_arm64.deb ... 442s Unpacking libpng-dev:arm64 (1.6.47-1) ... 442s Selecting previously unselected package libpotrace0:arm64. 442s Preparing to unpack .../105-libpotrace0_1.16-2build1_arm64.deb ... 442s Unpacking libpotrace0:arm64 (1.16-2build1) ... 442s Selecting previously unselected package libptexenc1:arm64. 442s Preparing to unpack .../106-libptexenc1_2024.20240313.70630+ds-5build2_arm64.deb ... 442s Unpacking libptexenc1:arm64 (2024.20240313.70630+ds-5build2) ... 442s Selecting previously unselected package libreadline-dev:arm64. 442s Preparing to unpack .../107-libreadline-dev_8.2-6_arm64.deb ... 442s Unpacking libreadline-dev:arm64 (8.2-6) ... 442s Selecting previously unselected package libsharpyuv0:arm64. 442s Preparing to unpack .../108-libsharpyuv0_1.5.0-0.1_arm64.deb ... 442s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 442s Selecting previously unselected package libsm6:arm64. 442s Preparing to unpack .../109-libsm6_2%3a1.2.4-1_arm64.deb ... 442s Unpacking libsm6:arm64 (2:1.2.4-1) ... 442s Selecting previously unselected package libsynctex2:arm64. 442s Preparing to unpack .../110-libsynctex2_2024.20240313.70630+ds-5build2_arm64.deb ... 442s Unpacking libsynctex2:arm64 (2024.20240313.70630+ds-5build2) ... 442s Selecting previously unselected package libtcl8.6:arm64. 442s Preparing to unpack .../111-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 442s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 442s Selecting previously unselected package libteckit0:arm64. 442s Preparing to unpack .../112-libteckit0_2.5.12+ds1-1_arm64.deb ... 442s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 442s Selecting previously unselected package libtexlua53-5:arm64. 442s Preparing to unpack .../113-libtexlua53-5_2024.20240313.70630+ds-5build2_arm64.deb ... 442s Unpacking libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 442s Selecting previously unselected package libjbig0:arm64. 443s Preparing to unpack .../114-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 443s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 443s Selecting previously unselected package libwebp7:arm64. 443s Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ... 443s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 443s Selecting previously unselected package libtiff6:arm64. 443s Preparing to unpack .../116-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 443s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 443s Selecting previously unselected package libxft2:arm64. 443s Preparing to unpack .../117-libxft2_2.3.6-1build1_arm64.deb ... 443s Unpacking libxft2:arm64 (2.3.6-1build1) ... 443s Selecting previously unselected package libxss1:arm64. 443s Preparing to unpack .../118-libxss1_1%3a1.2.3-1build3_arm64.deb ... 443s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 443s Selecting previously unselected package libtk8.6:arm64. 443s Preparing to unpack .../119-libtk8.6_8.6.16-1_arm64.deb ... 443s Unpacking libtk8.6:arm64 (8.6.16-1) ... 443s Selecting previously unselected package libxt6t64:arm64. 443s Preparing to unpack .../120-libxt6t64_1%3a1.2.1-1.2build1_arm64.deb ... 443s Unpacking libxt6t64:arm64 (1:1.2.1-1.2build1) ... 443s Selecting previously unselected package libxmu6:arm64. 443s Preparing to unpack .../121-libxmu6_2%3a1.1.3-3build2_arm64.deb ... 443s Unpacking libxmu6:arm64 (2:1.1.3-3build2) ... 443s Selecting previously unselected package libxpm4:arm64. 443s Preparing to unpack .../122-libxpm4_1%3a3.5.17-1build2_arm64.deb ... 443s Unpacking libxpm4:arm64 (1:3.5.17-1build2) ... 443s Selecting previously unselected package libxaw7:arm64. 443s Preparing to unpack .../123-libxaw7_2%3a1.0.16-1_arm64.deb ... 443s Unpacking libxaw7:arm64 (2:1.0.16-1) ... 443s Selecting previously unselected package libxi6:arm64. 443s Preparing to unpack .../124-libxi6_2%3a1.8.2-1_arm64.deb ... 443s Unpacking libxi6:arm64 (2:1.8.2-1) ... 443s Selecting previously unselected package libzzip-0-13t64:arm64. 443s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_arm64.deb ... 443s Unpacking libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 443s Selecting previously unselected package zip. 443s Preparing to unpack .../126-zip_3.0-14ubuntu2_arm64.deb ... 443s Unpacking zip (3.0-14ubuntu2) ... 443s Selecting previously unselected package unzip. 443s Preparing to unpack .../127-unzip_6.0-28ubuntu6_arm64.deb ... 443s Unpacking unzip (6.0-28ubuntu6) ... 444s Selecting previously unselected package xdg-utils. 444s Preparing to unpack .../128-xdg-utils_1.2.1-2ubuntu1_all.deb ... 444s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 444s Selecting previously unselected package r-base-core. 444s Preparing to unpack .../129-r-base-core_4.4.3-1_arm64.deb ... 444s Unpacking r-base-core (4.4.3-1) ... 444s Selecting previously unselected package r-cran-littler. 444s Preparing to unpack .../130-r-cran-littler_0.3.20-2_arm64.deb ... 444s Unpacking r-cran-littler (0.3.20-2) ... 444s Selecting previously unselected package littler. 445s Preparing to unpack .../131-littler_0.3.20-2_all.deb ... 445s Unpacking littler (0.3.20-2) ... 445s Selecting previously unselected package node-bootstrap-sass. 445s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 445s Unpacking node-bootstrap-sass (3.4.3-2) ... 445s Selecting previously unselected package node-html5shiv. 445s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 445s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 445s Selecting previously unselected package node-normalize.css. 445s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 445s Unpacking node-normalize.css (8.0.1-5) ... 445s Selecting previously unselected package pandoc-data. 445s Preparing to unpack .../135-pandoc-data_3.1.11.1-3build1_all.deb ... 445s Unpacking pandoc-data (3.1.11.1-3build1) ... 445s Selecting previously unselected package pandoc. 445s Preparing to unpack .../136-pandoc_3.1.11.1+ds-2_arm64.deb ... 445s Unpacking pandoc (3.1.11.1+ds-2) ... 446s Selecting previously unselected package liblzma-dev:arm64. 446s Preparing to unpack .../137-liblzma-dev_5.6.4-1_arm64.deb ... 446s Unpacking liblzma-dev:arm64 (5.6.4-1) ... 446s Selecting previously unselected package pkgconf-bin. 446s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_arm64.deb ... 446s Unpacking pkgconf-bin (1.8.1-4) ... 447s Selecting previously unselected package pkgconf:arm64. 447s Preparing to unpack .../139-pkgconf_1.8.1-4_arm64.deb ... 447s Unpacking pkgconf:arm64 (1.8.1-4) ... 447s Selecting previously unselected package libtirpc-dev:arm64. 447s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_arm64.deb ... 447s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 447s Selecting previously unselected package r-base-dev. 447s Preparing to unpack .../141-r-base-dev_4.4.3-1_all.deb ... 447s Unpacking r-base-dev (4.4.3-1) ... 447s Selecting previously unselected package pkg-r-autopkgtest. 447s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 447s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 447s Selecting previously unselected package r-bioc-biocgenerics. 447s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 447s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 447s Selecting previously unselected package r-cran-base64enc. 447s Preparing to unpack .../144-r-cran-base64enc_0.1-3-3_arm64.deb ... 447s Unpacking r-cran-base64enc (0.1-3-3) ... 447s Selecting previously unselected package r-cran-digest. 447s Preparing to unpack .../145-r-cran-digest_0.6.37-1_arm64.deb ... 447s Unpacking r-cran-digest (0.6.37-1) ... 447s Selecting previously unselected package r-cran-fastmap. 447s Preparing to unpack .../146-r-cran-fastmap_1.2.0-1_arm64.deb ... 447s Unpacking r-cran-fastmap (1.2.0-1) ... 447s Selecting previously unselected package r-cran-rlang. 447s Preparing to unpack .../147-r-cran-rlang_1.1.5-1_arm64.deb ... 447s Unpacking r-cran-rlang (1.1.5-1) ... 447s Selecting previously unselected package r-cran-htmltools. 447s Preparing to unpack .../148-r-cran-htmltools_0.5.8.1-1_arm64.deb ... 447s Unpacking r-cran-htmltools (0.5.8.1-1) ... 447s Selecting previously unselected package r-cran-evaluate. 447s Preparing to unpack .../149-r-cran-evaluate_1.0.3-1_all.deb ... 447s Unpacking r-cran-evaluate (1.0.3-1) ... 448s Selecting previously unselected package r-cran-xfun. 448s Preparing to unpack .../150-r-cran-xfun_0.51+dfsg-1_arm64.deb ... 448s Unpacking r-cran-xfun (0.51+dfsg-1) ... 448s Selecting previously unselected package r-cran-highr. 448s Preparing to unpack .../151-r-cran-highr_0.11+dfsg-1_all.deb ... 448s Unpacking r-cran-highr (0.11+dfsg-1) ... 448s Selecting previously unselected package r-cran-yaml. 448s Preparing to unpack .../152-r-cran-yaml_2.3.10-1_arm64.deb ... 448s Unpacking r-cran-yaml (2.3.10-1) ... 448s Selecting previously unselected package libjs-mathjax. 448s Preparing to unpack .../153-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 448s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 449s Selecting previously unselected package r-cran-knitr. 449s Preparing to unpack .../154-r-cran-knitr_1.49+dfsg-1_all.deb ... 449s Unpacking r-cran-knitr (1.49+dfsg-1) ... 449s Selecting previously unselected package r-cran-cachem. 449s Preparing to unpack .../155-r-cran-cachem_1.1.0-1_arm64.deb ... 449s Unpacking r-cran-cachem (1.1.0-1) ... 449s Selecting previously unselected package r-cran-jquerylib. 449s Preparing to unpack .../156-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 449s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 449s Selecting previously unselected package r-cran-jsonlite. 449s Preparing to unpack .../157-r-cran-jsonlite_1.9.1+dfsg-1_arm64.deb ... 449s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 449s Selecting previously unselected package r-cran-cli. 449s Preparing to unpack .../158-r-cran-cli_3.6.4-1_arm64.deb ... 449s Unpacking r-cran-cli (3.6.4-1) ... 449s Selecting previously unselected package r-cran-glue. 450s Preparing to unpack .../159-r-cran-glue_1.8.0-1_arm64.deb ... 450s Unpacking r-cran-glue (1.8.0-1) ... 450s Selecting previously unselected package r-cran-lifecycle. 450s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 450s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 450s Selecting previously unselected package r-cran-memoise. 450s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 450s Unpacking r-cran-memoise (2.0.1-1) ... 450s Selecting previously unselected package r-cran-mime. 450s Preparing to unpack .../162-r-cran-mime_0.12-2_arm64.deb ... 450s Unpacking r-cran-mime (0.12-2) ... 450s Selecting previously unselected package r-cran-fs. 450s Preparing to unpack .../163-r-cran-fs_1.6.5+dfsg-1_arm64.deb ... 450s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 450s Selecting previously unselected package r-cran-r6. 450s Preparing to unpack .../164-r-cran-r6_2.6.1-1_all.deb ... 450s Unpacking r-cran-r6 (2.6.1-1) ... 450s Selecting previously unselected package r-cran-rappdirs. 450s Preparing to unpack .../165-r-cran-rappdirs_0.3.3-1_arm64.deb ... 450s Unpacking r-cran-rappdirs (0.3.3-1) ... 450s Selecting previously unselected package r-cran-sass. 450s Preparing to unpack .../166-r-cran-sass_0.4.9+dfsg-1_arm64.deb ... 450s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 450s Selecting previously unselected package r-cran-bslib. 450s Preparing to unpack .../167-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 450s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 450s Selecting previously unselected package r-cran-fontawesome. 450s Preparing to unpack .../168-r-cran-fontawesome_0.5.3-1_all.deb ... 450s Unpacking r-cran-fontawesome (0.5.3-1) ... 451s Selecting previously unselected package r-cran-tinytex. 451s Preparing to unpack .../169-r-cran-tinytex_0.56-1_all.deb ... 451s Unpacking r-cran-tinytex (0.56-1) ... 451s Selecting previously unselected package libjs-modernizr. 451s Preparing to unpack .../170-libjs-modernizr_3.13.0-0.1_all.deb ... 451s Unpacking libjs-modernizr (3.13.0-0.1) ... 451s Selecting previously unselected package r-cran-pkgkitten. 451s Preparing to unpack .../171-r-cran-pkgkitten_0.2.4-1_all.deb ... 451s Unpacking r-cran-pkgkitten (0.2.4-1) ... 451s Selecting previously unselected package r-cran-rcpp. 451s Preparing to unpack .../172-r-cran-rcpp_1.0.14-1_arm64.deb ... 451s Unpacking r-cran-rcpp (1.0.14-1) ... 451s Selecting previously unselected package r-cran-later. 451s Preparing to unpack .../173-r-cran-later_1.4.1+dfsg-1_arm64.deb ... 451s Unpacking r-cran-later (1.4.1+dfsg-1) ... 451s Selecting previously unselected package r-cran-magrittr. 451s Preparing to unpack .../174-r-cran-magrittr_2.0.3-1_arm64.deb ... 451s Unpacking r-cran-magrittr (2.0.3-1) ... 451s Selecting previously unselected package r-cran-promises. 451s Preparing to unpack .../175-r-cran-promises_1.3.2+dfsg-1_arm64.deb ... 451s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 451s Selecting previously unselected package r-cran-httpuv. 451s Preparing to unpack .../176-r-cran-httpuv_1.6.15+dfsg-1_arm64.deb ... 451s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 451s Selecting previously unselected package r-cran-xtable. 451s Preparing to unpack .../177-r-cran-xtable_1%3a1.8-4-2_all.deb ... 451s Unpacking r-cran-xtable (1:1.8-4-2) ... 452s Selecting previously unselected package r-cran-sourcetools. 452s Preparing to unpack .../178-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 452s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 452s Selecting previously unselected package r-cran-crayon. 452s Preparing to unpack .../179-r-cran-crayon_1.5.3-1_all.deb ... 452s Unpacking r-cran-crayon (1.5.3-1) ... 452s Selecting previously unselected package r-cran-withr. 452s Preparing to unpack .../180-r-cran-withr_3.0.2+dfsg-1_all.deb ... 452s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 452s Selecting previously unselected package r-cran-commonmark. 452s Preparing to unpack .../181-r-cran-commonmark_1.9.2-2_arm64.deb ... 452s Unpacking r-cran-commonmark (1.9.2-2) ... 452s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 452s Preparing to unpack .../182-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 452s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 452s Selecting previously unselected package r-cran-shiny. 452s Preparing to unpack .../183-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 452s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 452s Selecting previously unselected package r-cran-rmarkdown. 452s Preparing to unpack .../184-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 452s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 453s Selecting previously unselected package r-cran-bookdown. 453s Preparing to unpack .../185-r-cran-bookdown_0.42+dfsg-1_all.deb ... 453s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 453s Selecting previously unselected package r-cran-biocmanager. 453s Preparing to unpack .../186-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 453s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 453s Selecting previously unselected package tex-common. 453s Preparing to unpack .../187-tex-common_6.19_all.deb ... 453s Unpacking tex-common (6.19) ... 453s Selecting previously unselected package t1utils. 453s Preparing to unpack .../188-t1utils_1.41-4build3_arm64.deb ... 453s Unpacking t1utils (1.41-4build3) ... 453s Selecting previously unselected package texlive-binaries. 453s Preparing to unpack .../189-texlive-binaries_2024.20240313.70630+ds-5build2_arm64.deb ... 453s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ... 453s Selecting previously unselected package texlive-base. 453s Preparing to unpack .../190-texlive-base_2024.20250114-1_all.deb ... 453s Unpacking texlive-base (2024.20250114-1) ... 455s Selecting previously unselected package texlive-latex-base. 455s Preparing to unpack .../191-texlive-latex-base_2024.20250114-1_all.deb ... 455s Unpacking texlive-latex-base (2024.20250114-1) ... 455s Selecting previously unselected package texlive-bibtex-extra. 455s Preparing to unpack .../192-texlive-bibtex-extra_2024.20250114-1_all.deb ... 455s Unpacking texlive-bibtex-extra (2024.20250114-1) ... 458s Selecting previously unselected package r-bioc-biocversion. 458s Preparing to unpack .../193-r-bioc-biocversion_3.20.0-2_all.deb ... 458s Unpacking r-bioc-biocversion (3.20.0-2) ... 458s Selecting previously unselected package r-bioc-biocstyle. 458s Preparing to unpack .../194-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 458s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 458s Selecting previously unselected package r-bioc-graph. 459s Preparing to unpack .../195-r-bioc-graph_1.84.1-1_arm64.deb ... 459s Unpacking r-bioc-graph (1.84.1-1) ... 459s Selecting previously unselected package r-cran-bh. 459s Preparing to unpack .../196-r-cran-bh_1.84.0-1_all.deb ... 459s Unpacking r-cran-bh (1.84.0-1) ... 459s Selecting previously unselected package r-bioc-rbgl. 459s Preparing to unpack .../197-r-bioc-rbgl_1.82.0+dfsg-2_arm64.deb ... 459s Unpacking r-bioc-rbgl (1.82.0+dfsg-2) ... 459s Selecting previously unselected package r-cran-cluster. 459s Preparing to unpack .../198-r-cran-cluster_2.1.8-1_arm64.deb ... 459s Unpacking r-cran-cluster (2.1.8-1) ... 459s Selecting previously unselected package r-cran-runit. 459s Preparing to unpack .../199-r-cran-runit_0.4.33-1_all.deb ... 459s Unpacking r-cran-runit (0.4.33-1) ... 459s Selecting previously unselected package r-cran-sparsem. 459s Preparing to unpack .../200-r-cran-sparsem_1.84-2-1_arm64.deb ... 459s Unpacking r-cran-sparsem (1.84-2-1) ... 459s Selecting previously unselected package r-cran-xml. 459s Preparing to unpack .../201-r-cran-xml_3.99-0.18-1_arm64.deb ... 459s Unpacking r-cran-xml (3.99-0.18-1) ... 459s Setting up libjs-json (0~20221030+~1.0.8-1) ... 459s Setting up javascript-common (12) ... 459s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 459s Setting up libpixman-1-0:arm64 (0.44.0-3) ... 459s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 459s Setting up libncurses-dev:arm64 (6.5+20250216-2) ... 459s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 459s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 459s Setting up libxpm4:arm64 (1:3.5.17-1build2) ... 459s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 459s Setting up libxi6:arm64 (2:1.8.2-1) ... 459s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 459s Setting up libdatrie1:arm64 (0.2.13-3build1) ... 459s Setting up libjs-popper.js (1.16.1+ds-6) ... 459s Setting up libxcb-render0:arm64 (1.17.0-2) ... 459s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 459s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 459s Setting up libjs-lunr (2.3.9~dfsg-2) ... 459s Setting up unzip (6.0-28ubuntu6) ... 459s Setting up liblatex-tounicode-perl (0.55-1) ... 459s Setting up x11-common (1:7.7+23ubuntu3) ... 460s Setting up node-html5shiv (3.7.3+dfsg-5) ... 460s Setting up libdeflate0:arm64 (1.23-1) ... 460s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 460s Setting up libxcb-shm0:arm64 (1.17.0-2) ... 460s Setting up libreadline-dev:arm64 (8.2-6) ... 460s Setting up libgomp1:arm64 (15-20250222-0ubuntu1) ... 460s Setting up libjs-modernizr (3.13.0-0.1) ... 460s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 460s Setting up libpcre2-16-0:arm64 (10.45-1) ... 460s Setting up libjs-es5-shim (4.6.7-2) ... 460s Setting up tex-common (6.19) ... 460s update-language: texlive-base not installed and configured, doing nothing! 460s Setting up libio-string-perl (1.08-4) ... 460s Setting up zip (3.0-14ubuntu2) ... 460s Setting up libpcre2-32-0:arm64 (10.45-1) ... 460s Setting up libblas3:arm64 (3.12.1-2) ... 460s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 460s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3) ... 460s Setting up libpkgconf3:arm64 (1.8.1-4) ... 460s Setting up libzzip-0-13t64:arm64 (0.13.78+dfsg.1-0.1) ... 460s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 460s Setting up t1utils (1.41-4build3) ... 460s Setting up libtexlua53-5:arm64 (2024.20240313.70630+ds-5build2) ... 460s Setting up libjs-d3 (3.5.17-4) ... 460s Setting up fonts-dejavu-mono (2.37-8) ... 460s Setting up libmpc3:arm64 (1.3.1-1build2) ... 460s 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to provide /usr/bin/bibtex (bibtex) in auto mode 464s Setting up r-cran-cluster (2.1.8-1) ... 464s Setting up gfortran-14-aarch64-linux-gnu (14.2.0-17ubuntu3) ... 464s Setting up r-cran-sparsem (1.84-2-1) ... 464s Setting up g++-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 464s Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1ubuntu1) ... 464s Setting up r-cran-commonmark (1.9.2-2) ... 464s Setting up g++-14 (14.2.0-17ubuntu3) ... 464s Setting up r-cran-r6 (2.6.1-1) ... 464s Setting up r-cran-pkgkitten (0.2.4-1) ... 464s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 464s Setting up texlive-base (2024.20250114-1) ... 465s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 465s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 465s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 466s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 466s Setting up r-cran-magrittr (2.0.3-1) ... 466s Setting up r-cran-rappdirs (0.3.3-1) ... 466s Setting up r-cran-littler (0.3.20-2) ... 466s Setting up r-cran-bh (1.84.0-1) ... 466s Setting up r-cran-fs (1.6.5+dfsg-1) ... 466s Setting up r-cran-rcpp (1.0.14-1) ... 466s Setting up r-bioc-biocgenerics (0.52.0-2) ... 466s Setting up r-cran-rlang (1.1.5-1) ... 466s Setting up littler (0.3.20-2) ... 466s Setting up r-cran-xfun (0.51+dfsg-1) ... 466s Setting up r-cran-withr (3.0.2+dfsg-1) ... 466s Setting up r-cran-mime (0.12-2) ... 466s Setting up r-cran-base64enc (0.1-3-3) ... 466s Setting up r-cran-digest (0.6.37-1) ... 466s Setting up r-cran-yaml (2.3.10-1) ... 466s Setting up r-cran-evaluate (1.0.3-1) ... 466s Setting up r-cran-highr (0.11+dfsg-1) ... 466s Setting up r-cran-glue (1.8.0-1) ... 466s Setting up r-cran-xtable (1:1.8-4-2) ... 466s Setting up r-cran-cli (3.6.4-1) ... 466s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 466s Setting up r-bioc-biocversion (3.20.0-2) ... 466s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 466s Setting up gcc (4:14.2.0-1ubuntu1) ... 466s Setting up r-cran-fastmap (1.2.0-1) ... 466s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 466s Setting up texlive-latex-base (2024.20250114-1) ... 466s Setting up r-cran-runit (0.4.33-1) ... 466s Setting up r-cran-later (1.4.1+dfsg-1) ... 466s Setting up r-cran-htmltools (0.5.8.1-1) ... 466s Setting up r-cran-tinytex (0.56-1) ... 466s Setting up r-cran-knitr (1.49+dfsg-1) ... 466s Setting up g++ (4:14.2.0-1ubuntu1) ... 466s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 466s Setting up r-cran-cachem (1.1.0-1) ... 466s Setting up r-cran-sass (0.4.9+dfsg-1) ... 466s Setting up build-essential (12.10ubuntu1) ... 466s Setting up r-bioc-graph (1.84.1-1) ... 466s Setting up r-bioc-rbgl (1.82.0+dfsg-2) ... 466s Setting up r-cran-fontawesome (0.5.3-1) ... 466s Setting up gfortran (4:14.2.0-1ubuntu1) ... 466s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 466s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 466s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 466s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 466s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 466s Setting up texlive-bibtex-extra (2024.20250114-1) ... 466s Setting up r-cran-memoise (2.0.1-1) ... 466s Setting up r-cran-promises (1.3.2+dfsg-1) ... 466s Setting up r-base-dev (4.4.3-1) ... 466s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 466s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 466s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 466s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 466s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 466s Setting up r-cran-bookdown (0.42+dfsg-1) ... 466s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 466s Processing triggers for libc-bin (2.41-1ubuntu2) ... 466s Processing triggers for man-db (2.13.0-1) ... 469s Processing triggers for install-info (7.1.1-1) ... 469s Processing triggers for tex-common (6.19) ... 470s Running updmap-sys. This may take some time... done. 470s Running mktexlsr /var/lib/texmf ... done. 470s Building format(s) --all. 510s This may take some time... done. 511s autopkgtest [15:30:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 511s autopkgtest [15:30:13]: test pkg-r-autopkgtest: [----------------------- 512s Test: Try to load the R library graph 512s 512s R version 4.4.3 (2025-02-28) -- "Trophy Case" 512s Copyright (C) 2025 The R Foundation for Statistical Computing 512s Platform: aarch64-unknown-linux-gnu 512s 512s R is free software and comes with ABSOLUTELY NO WARRANTY. 512s You are welcome to redistribute it under certain conditions. 512s Type 'license()' or 'licence()' for distribution details. 512s 512s R is a collaborative project with many contributors. 512s Type 'contributors()' for more information and 512s 'citation()' on how to cite R or R packages in publications. 512s 512s Type 'demo()' for some demos, 'help()' for on-line help, or 512s 'help.start()' for an HTML browser interface to help. 512s Type 'q()' to quit R. 512s 512s > library('graph') 512s Loading required package: BiocGenerics 512s 512s Attaching package: ‘BiocGenerics’ 512s 512s The following objects are masked from ‘package:stats’: 512s 512s IQR, mad, sd, var, xtabs 512s 512s The following objects are masked from ‘package:base’: 512s 512s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 512s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 512s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 512s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 512s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 512s table, tapply, union, unique, unsplit, which.max, which.min 512s 512s > 512s > 512s Other tests are currently unsupported! 512s They will be progressively added. 513s autopkgtest [15:30:15]: test pkg-r-autopkgtest: -----------------------] 513s pkg-r-autopkgtest PASS 513s autopkgtest [15:30:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 514s autopkgtest [15:30:16]: @@@@@@@@@@@@@@@@@@@@ summary 514s pkg-r-autopkgtest PASS 531s nova [W] Using flock in prodstack6-arm64 531s Creating nova instance adt-plucky-arm64-r-bioc-graph-20250315-150725-juju-7f2275-prod-proposed-migration-environment-20-cd1014c2-aade-4cee-b7f7-3f11cc264916 from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 531s nova [W] Timed out waiting for 0304d97a-55a5-4e87-a270-bc85fa30729e to get deleted.